Query 012833
Match_columns 455
No_of_seqs 246 out of 311
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a01_A Apolipoprotein A-I; fou 99.2 2E-11 6.8E-16 118.5 10.1 117 235-366 121-237 (243)
2 3s84_A Apolipoprotein A-IV; fo 99.1 2E-09 6.7E-14 106.3 16.0 66 261-330 92-157 (273)
3 3s84_A Apolipoprotein A-IV; fo 98.9 3.6E-07 1.2E-11 90.0 23.9 15 235-249 121-135 (273)
4 2a01_A Apolipoprotein A-I; fou 98.9 2.5E-09 8.5E-14 103.7 7.1 117 235-366 99-226 (243)
5 2lem_A Apolipoprotein A-I; lip 98.9 2.9E-09 1E-13 101.4 7.3 113 234-363 97-209 (216)
6 1nfn_A Apolipoprotein E3; lipi 98.8 3.7E-08 1.2E-12 92.4 12.2 83 259-345 108-190 (191)
7 1nfn_A Apolipoprotein E3; lipi 98.7 3.7E-08 1.3E-12 92.3 10.3 113 250-366 77-189 (191)
8 3r2p_A Apolipoprotein A-I; amp 98.7 4.9E-08 1.7E-12 90.8 9.0 85 277-361 83-167 (185)
9 3r2p_A Apolipoprotein A-I; amp 98.7 3.9E-08 1.3E-12 91.5 7.7 114 235-363 67-180 (185)
10 1c1g_A Tropomyosin; contractIl 98.6 2.2E-05 7.4E-10 73.2 25.1 57 44-100 5-61 (284)
11 1c1g_A Tropomyosin; contractIl 98.6 2.6E-05 8.9E-10 72.6 25.0 55 45-99 13-67 (284)
12 3na7_A HP0958; flagellar bioge 98.6 2.1E-05 7.2E-10 76.4 24.5 98 43-140 23-121 (256)
13 2l7b_A Apolipoprotein E, APO-E 98.5 2.8E-07 9.7E-12 92.2 9.3 115 235-364 147-290 (307)
14 1gs9_A Apolipoprotein E, APOE4 98.4 8.7E-08 3E-12 87.9 3.7 89 259-351 75-163 (165)
15 3na7_A HP0958; flagellar bioge 98.4 3.8E-05 1.3E-09 74.6 22.0 50 125-174 92-141 (256)
16 2lem_A Apolipoprotein A-I; lip 98.4 1.8E-07 6.1E-12 89.1 5.3 81 277-357 92-172 (216)
17 2l7b_A Apolipoprotein E, APO-E 98.4 3.8E-07 1.3E-11 91.3 7.5 104 255-362 112-230 (307)
18 1i84_S Smooth muscle myosin he 98.0 1.9E-05 6.5E-10 91.6 10.5 41 43-83 862-902 (1184)
19 1i84_S Smooth muscle myosin he 97.9 2.2E-05 7.4E-10 91.2 10.4 57 44-100 856-912 (1184)
20 1gs9_A Apolipoprotein E, APOE4 97.9 1.8E-05 6.2E-10 72.5 6.8 78 283-360 73-150 (165)
21 2dfs_A Myosin-5A; myosin-V, in 97.9 0.00026 9E-09 81.5 17.6 125 54-186 923-1051(1080)
22 2v71_A Nuclear distribution pr 97.7 0.0046 1.6E-07 57.6 20.0 120 79-198 48-173 (189)
23 2efr_A General control protein 97.7 0.02 6.8E-07 51.8 23.2 66 123-188 70-135 (155)
24 3oja_B Anopheles plasmodium-re 97.6 0.0011 3.9E-08 70.4 16.0 32 67-98 457-488 (597)
25 2efr_A General control protein 97.4 0.022 7.5E-07 51.5 20.0 91 43-134 26-116 (155)
26 2dfs_A Myosin-5A; myosin-V, in 97.4 0.0036 1.2E-07 72.1 18.5 124 48-179 924-1051(1080)
27 3o0z_A RHO-associated protein 97.4 0.045 1.5E-06 50.0 21.4 48 52-99 6-53 (168)
28 2fxo_A Myosin heavy chain, car 97.3 0.03 1E-06 48.9 19.0 16 79-94 40-55 (129)
29 3o0z_A RHO-associated protein 97.3 0.064 2.2E-06 48.9 21.4 122 42-164 10-138 (168)
30 2v71_A Nuclear distribution pr 97.3 0.12 4E-06 48.2 24.1 35 45-79 10-44 (189)
31 3oja_B Anopheles plasmodium-re 97.2 0.0057 2E-07 64.9 16.4 34 158-191 544-577 (597)
32 3u1c_A Tropomyosin alpha-1 cha 97.2 0.019 6.3E-07 48.3 15.7 53 47-99 4-56 (101)
33 3vkg_A Dynein heavy chain, cyt 97.2 0.02 7E-07 72.1 22.5 39 59-97 1927-1965(3245)
34 3vkg_A Dynein heavy chain, cyt 97.1 0.049 1.7E-06 68.8 24.3 60 126-185 2017-2076(3245)
35 2fxo_A Myosin heavy chain, car 97.0 0.092 3.1E-06 45.7 19.0 9 75-83 22-30 (129)
36 3u59_A Tropomyosin beta chain; 97.0 0.029 1E-06 46.9 15.2 53 47-99 4-56 (101)
37 4gkw_A Spindle assembly abnorm 96.2 0.61 2.1E-05 40.9 22.0 128 74-202 26-156 (167)
38 3tnu_B Keratin, type II cytosk 96.0 0.11 3.9E-06 45.1 13.0 14 85-98 41-54 (129)
39 2eqb_B RAB guanine nucleotide 95.9 0.27 9.2E-06 41.0 14.0 87 43-136 3-89 (97)
40 3tnu_A Keratin, type I cytoske 95.9 0.11 3.8E-06 45.3 12.4 22 78-99 36-57 (131)
41 3tnu_B Keratin, type II cytosk 95.8 0.19 6.6E-06 43.6 13.6 45 109-153 29-73 (129)
42 3tnu_A Keratin, type I cytoske 95.6 0.18 6.2E-06 43.9 12.7 45 108-152 30-74 (131)
43 3ghg_A Fibrinogen alpha chain; 95.5 0.38 1.3E-05 50.8 16.5 48 114-161 107-155 (562)
44 2ocy_A RAB guanine nucleotide 95.5 1.3 4.6E-05 39.8 20.0 30 167-196 110-139 (154)
45 1deq_A Fibrinogen (alpha chain 95.4 0.32 1.1E-05 49.5 15.0 41 119-159 116-156 (390)
46 3hnw_A Uncharacterized protein 95.1 0.58 2E-05 41.3 14.2 41 110-150 69-109 (138)
47 1ic2_A Tropomyosin alpha chain 95.1 0.38 1.3E-05 38.5 11.8 36 157-192 33-68 (81)
48 1ic2_A Tropomyosin alpha chain 94.9 0.4 1.4E-05 38.4 11.6 57 120-176 10-66 (81)
49 2b9c_A Striated-muscle alpha t 94.8 0.36 1.2E-05 43.1 12.1 36 62-97 27-62 (147)
50 3ghg_A Fibrinogen alpha chain; 94.8 0.27 9.3E-06 51.9 12.9 41 141-181 114-154 (562)
51 2v4h_A NF-kappa-B essential mo 94.6 0.38 1.3E-05 40.8 11.1 43 117-159 63-105 (110)
52 1l8d_A DNA double-strand break 94.6 0.71 2.4E-05 38.5 13.0 22 78-99 22-43 (112)
53 2b9c_A Striated-muscle alpha t 94.6 1.3 4.3E-05 39.6 15.2 10 117-126 53-62 (147)
54 2xzr_A Immunoglobulin-binding 94.5 1.8 6.1E-05 36.0 17.1 87 50-144 4-90 (114)
55 2ocy_A RAB guanine nucleotide 94.5 2.6 9.1E-05 37.8 20.5 28 164-191 114-141 (154)
56 1deq_A Fibrinogen (alpha chain 94.2 1.8 6.2E-05 44.0 17.0 36 111-146 122-157 (390)
57 3nmd_A CGMP dependent protein 94.1 0.13 4.4E-06 40.7 6.7 47 54-100 21-67 (72)
58 2e7s_A RAB guanine nucleotide 94.1 0.22 7.4E-06 44.0 8.8 51 43-97 6-56 (135)
59 2oto_A M protein; helical coil 93.7 3.5 0.00012 36.6 20.1 16 50-65 27-42 (155)
60 3oja_A Leucine-rich immune mol 93.5 1.6 5.4E-05 45.1 15.7 48 152-199 436-483 (487)
61 2eqb_B RAB guanine nucleotide 93.4 3 0.0001 34.7 14.6 37 121-157 24-60 (97)
62 3oja_A Leucine-rich immune mol 93.4 3.8 0.00013 42.2 18.4 20 78-97 372-391 (487)
63 2zqm_A Prefoldin beta subunit 93.4 1.3 4.4E-05 37.0 12.2 41 43-83 4-44 (117)
64 1m1j_B Fibrinogen beta chain; 93.3 1.4 4.6E-05 46.3 14.7 17 166-182 176-192 (464)
65 3ol1_A Vimentin; structural ge 93.2 2.6 9E-05 36.0 14.1 62 122-183 40-101 (119)
66 3a7p_A Autophagy protein 16; c 92.8 1.5 5.3E-05 39.2 12.3 41 60-100 69-109 (152)
67 1l8d_A DNA double-strand break 92.8 2.2 7.5E-05 35.5 12.9 6 123-128 31-36 (112)
68 2v66_B Nuclear distribution pr 92.8 4.1 0.00014 34.6 17.6 49 117-165 36-84 (111)
69 3q8t_A Beclin-1; autophagy, AT 92.7 3.7 0.00013 33.9 15.0 21 169-189 71-91 (96)
70 3a7p_A Autophagy protein 16; c 92.6 1.1 3.7E-05 40.2 10.9 63 43-105 59-121 (152)
71 1fxk_A Prefoldin; archaeal pro 92.5 1.3 4.5E-05 36.4 11.0 37 46-82 2-38 (107)
72 2v66_B Nuclear distribution pr 92.4 4.6 0.00016 34.4 15.8 21 120-140 32-52 (111)
73 3swk_A Vimentin; cytoskeleton, 92.3 1.8 6.1E-05 35.1 11.1 24 47-70 2-25 (86)
74 2jee_A YIIU; FTSZ, septum, coi 92.0 2.5 8.5E-05 34.1 11.3 22 78-99 11-32 (81)
75 3qh9_A Liprin-beta-2; coiled-c 91.8 0.81 2.8E-05 36.8 8.2 55 42-96 23-77 (81)
76 3jsv_C NF-kappa-B essential mo 91.7 1.3 4.3E-05 36.7 9.6 49 116-164 40-88 (94)
77 3mq9_A Bone marrow stromal ant 91.3 4.8 0.00017 41.2 16.0 31 163-193 434-464 (471)
78 1m1j_B Fibrinogen beta chain; 91.3 7.7 0.00026 40.6 17.4 13 173-185 176-188 (464)
79 3swk_A Vimentin; cytoskeleton, 91.3 2.8 9.4E-05 34.0 11.1 62 120-181 18-79 (86)
80 3s4r_A Vimentin; alpha-helix, 91.2 4.1 0.00014 33.4 12.3 24 44-67 8-31 (93)
81 3nmd_A CGMP dependent protein 91.1 0.53 1.8E-05 37.1 6.4 41 61-101 21-61 (72)
82 2w83_C C-JUN-amino-terminal ki 90.9 2.8 9.5E-05 33.3 10.3 70 121-190 7-76 (77)
83 1m1j_C Fibrinogen gamma chain; 90.8 2.7 9.2E-05 43.4 13.3 12 117-128 85-96 (409)
84 3efg_A Protein SLYX homolog; x 90.8 0.69 2.4E-05 37.0 7.0 52 141-192 11-62 (78)
85 2no2_A HIP-I, huntingtin-inter 90.8 6.7 0.00023 33.0 16.4 31 59-89 8-38 (107)
86 2oto_A M protein; helical coil 90.7 8.4 0.00029 34.1 20.1 14 57-70 27-40 (155)
87 3ol1_A Vimentin; structural ge 90.6 7.4 0.00025 33.2 16.4 29 121-149 67-95 (119)
88 3i00_A HIP-I, huntingtin-inter 89.8 1.7 5.9E-05 37.4 9.2 20 80-99 15-34 (120)
89 2xnx_M M protein, M1-BC1; cell 89.6 0.6 2.1E-05 41.5 6.2 49 117-165 60-108 (146)
90 1fxk_C Protein (prefoldin); ar 89.5 6.2 0.00021 33.7 12.7 41 108-148 87-127 (133)
91 3mq9_A Bone marrow stromal ant 88.8 17 0.00058 37.1 17.6 36 156-191 434-469 (471)
92 3iox_A AGI/II, PA; alpha helix 88.7 12 0.00041 39.4 16.1 42 150-191 65-106 (497)
93 2i1j_A Moesin; FERM, coiled-co 87.9 0.64 2.2E-05 50.0 6.3 54 143-196 404-457 (575)
94 2pms_C Pneumococcal surface pr 87.5 4.7 0.00016 34.9 10.3 25 49-73 10-34 (125)
95 2pms_C Pneumococcal surface pr 87.1 4.8 0.00017 34.9 10.1 17 177-193 101-117 (125)
96 2i1j_A Moesin; FERM, coiled-co 86.8 0.98 3.3E-05 48.5 6.9 10 90-99 338-347 (575)
97 1m1j_A Fibrinogen alpha subuni 86.5 19 0.00065 37.5 15.8 49 49-97 62-110 (491)
98 1x8y_A Lamin A/C; structural p 86.5 4.2 0.00014 32.8 9.0 46 114-159 33-78 (86)
99 1m1j_A Fibrinogen alpha subuni 86.4 21 0.00072 37.2 16.1 36 147-182 121-156 (491)
100 1gk4_A Vimentin; intermediate 86.1 12 0.00039 30.0 11.6 48 112-159 29-76 (84)
101 3a7o_A Autophagy protein 16; c 86.1 3.4 0.00012 32.3 7.7 43 60-102 19-61 (75)
102 3iv1_A Tumor susceptibility ge 85.3 13 0.00043 29.7 11.5 58 113-170 15-72 (78)
103 2xzr_A Immunoglobulin-binding 84.9 15 0.00053 30.4 17.2 28 143-170 61-88 (114)
104 3l4q_C Phosphatidylinositol 3- 84.3 24 0.00083 32.1 15.2 49 48-96 20-68 (170)
105 3i00_A HIP-I, huntingtin-inter 83.7 16 0.00053 31.4 11.7 11 89-99 17-27 (120)
106 3a7o_A Autophagy protein 16; c 83.2 7.5 0.00026 30.4 8.5 59 48-106 14-72 (75)
107 1d7m_A Cortexillin I; coiled-c 83.2 18 0.0006 29.6 15.7 68 123-190 25-92 (101)
108 1x79_B RAB GTPase binding effe 83.1 21 0.00071 30.4 12.7 59 120-181 10-68 (112)
109 3ghg_C Fibrinogen gamma chain; 83.0 22 0.00075 36.6 14.6 27 113-139 81-107 (411)
110 1m1j_C Fibrinogen gamma chain; 83.0 19 0.00064 37.1 14.1 28 158-185 105-132 (409)
111 3hhm_B NISH2 P85alpha; PI3KCA, 82.1 42 0.0014 34.0 16.3 54 43-96 124-177 (373)
112 3c9i_A Tail needle protein GP2 82.0 22 0.00075 33.3 12.7 63 113-175 81-143 (242)
113 2qyw_A Vesicle transport throu 82.0 12 0.00043 30.9 10.2 57 69-132 45-101 (102)
114 2lw1_A ABC transporter ATP-bin 81.7 11 0.00036 30.4 9.5 23 75-97 24-46 (89)
115 4gkw_A Spindle assembly abnorm 81.3 27 0.00093 30.5 22.5 44 141-184 102-145 (167)
116 2nrj_A HBL B protein; enteroto 81.1 38 0.0013 33.8 15.4 63 42-104 120-193 (346)
117 1cii_A Colicin IA; bacteriocin 81.0 58 0.002 34.1 17.6 12 410-421 566-577 (602)
118 1jcd_A Major outer membrane li 80.8 7.9 0.00027 28.6 7.5 6 118-123 41-46 (52)
119 3cvf_A Homer-3, homer protein 80.8 5.9 0.0002 31.7 7.4 46 151-196 6-51 (79)
120 3jsv_C NF-kappa-B essential mo 80.8 14 0.00047 30.5 9.7 11 123-133 23-33 (94)
121 2yko_A LINE-1 ORF1P; RNA-bindi 80.4 2.5 8.5E-05 40.4 6.0 50 48-97 2-51 (233)
122 3trt_A Vimentin; cytoskeleton, 79.9 13 0.00044 28.8 9.2 29 108-136 48-76 (77)
123 3htk_A Structural maintenance 79.8 9.5 0.00033 28.1 8.0 7 51-57 11-17 (60)
124 1ses_A Seryl-tRNA synthetase; 79.6 15 0.00052 37.7 12.1 53 50-104 7-59 (421)
125 3iox_A AGI/II, PA; alpha helix 79.6 61 0.0021 34.1 16.5 68 128-198 39-106 (497)
126 3mov_A Lamin-B1; LMNB1, B-type 79.1 9.1 0.00031 31.5 8.3 11 121-131 49-59 (95)
127 1d7m_A Cortexillin I; coiled-c 78.8 25 0.00087 28.7 15.6 24 141-164 71-94 (101)
128 3mq7_A Bone marrow stromal ant 78.8 30 0.001 29.5 13.9 29 168-196 74-102 (121)
129 2ke4_A CDC42-interacting prote 78.5 25 0.00086 29.0 10.9 28 150-177 61-88 (98)
130 1go4_E MAD1 (mitotic arrest de 78.5 11 0.00038 31.4 8.6 29 117-145 13-41 (100)
131 4hpq_C ATG17, KLTH0D15642P; au 78.4 65 0.0022 33.1 24.5 153 45-212 235-390 (413)
132 1lwu_C Fibrinogen gamma chain; 78.3 4 0.00014 40.8 7.0 47 53-99 6-52 (323)
133 3efg_A Protein SLYX homolog; x 77.5 6.3 0.00022 31.3 6.6 43 149-191 12-54 (78)
134 3ghg_C Fibrinogen gamma chain; 77.3 31 0.0011 35.5 13.5 8 173-180 120-127 (411)
135 1vcs_A Vesicle transport throu 75.4 17 0.00057 30.1 9.0 83 44-135 11-93 (102)
136 1wle_A Seryl-tRNA synthetase; 75.2 38 0.0013 35.7 13.8 56 47-102 43-99 (501)
137 3s4r_A Vimentin; alpha-helix, 74.4 34 0.0011 27.9 11.9 25 152-176 57-81 (93)
138 3mq7_A Bone marrow stromal ant 74.1 41 0.0014 28.7 14.6 19 115-133 45-63 (121)
139 3uux_B Mitochondrial division 73.8 30 0.001 33.1 11.4 66 127-192 153-218 (242)
140 1zxa_A CGMP-dependent protein 73.6 4.2 0.00014 31.6 4.5 38 63-100 15-52 (67)
141 3qh9_A Liprin-beta-2; coiled-c 73.5 33 0.0011 27.4 10.9 31 130-160 26-56 (81)
142 3vp9_A General transcriptional 73.5 6.2 0.00021 32.5 5.7 76 120-198 11-87 (92)
143 1ik9_A DNA repair protein XRCC 72.6 62 0.0021 30.2 13.3 24 120-143 150-173 (213)
144 2no2_A HIP-I, huntingtin-inter 72.4 42 0.0014 28.1 15.1 12 74-85 30-41 (107)
145 2oqq_A Transcription factor HY 71.4 15 0.00051 25.9 6.4 32 140-171 6-37 (42)
146 4etp_A Kinesin-like protein KA 71.0 7.7 0.00026 39.7 7.2 54 46-99 4-57 (403)
147 3ghg_B Fibrinogen beta chain; 70.9 50 0.0017 34.5 13.1 22 159-180 164-185 (461)
148 3ghg_B Fibrinogen beta chain; 70.8 36 0.0012 35.5 12.1 27 152-178 164-190 (461)
149 3ajw_A Flagellar FLIJ protein; 70.8 48 0.0016 28.1 17.5 52 118-169 69-120 (150)
150 3uux_B Mitochondrial division 70.7 45 0.0015 31.9 11.8 75 119-193 152-226 (242)
151 2l5g_B Putative uncharacterize 70.1 8.9 0.0003 27.0 5.0 26 75-100 11-36 (42)
152 1cii_A Colicin IA; bacteriocin 69.8 1.1E+02 0.0039 32.0 17.1 22 408-429 569-590 (602)
153 4emc_A Monopolin complex subun 68.8 31 0.0011 31.8 9.9 21 119-139 16-36 (190)
154 1go4_E MAD1 (mitotic arrest de 68.5 25 0.00087 29.2 8.5 30 110-139 13-42 (100)
155 2zdi_C Prefoldin subunit alpha 68.2 14 0.00049 32.3 7.5 31 110-140 99-129 (151)
156 1oef_A Apolipoprotein E; glyco 67.4 4.4 0.00015 25.4 2.8 21 346-366 2-22 (26)
157 2dq0_A Seryl-tRNA synthetase; 67.2 28 0.00097 36.1 10.6 23 75-97 33-55 (455)
158 4ad8_A DNA repair protein RECN 67.2 1.2E+02 0.0041 31.3 19.9 50 52-101 186-241 (517)
159 4emc_A Monopolin complex subun 66.1 32 0.0011 31.8 9.4 17 47-63 15-31 (190)
160 3hhm_B NISH2 P85alpha; PI3KCA, 66.0 1E+02 0.0034 31.2 14.1 39 157-195 211-249 (373)
161 2qih_A Protein USPA1; trimeric 64.7 74 0.0025 28.0 21.9 25 75-99 42-66 (157)
162 2w83_C C-JUN-amino-terminal ki 64.5 51 0.0018 26.1 10.3 57 131-187 10-66 (77)
163 1deb_A APC protein, adenomatou 63.5 33 0.0011 25.1 7.1 46 112-157 6-51 (54)
164 2zdi_C Prefoldin subunit alpha 63.4 24 0.00083 30.8 8.0 45 114-158 96-140 (151)
165 3cvf_A Homer-3, homer protein 63.4 55 0.0019 26.0 9.4 32 110-141 14-45 (79)
166 1wle_A Seryl-tRNA synthetase; 62.8 56 0.0019 34.4 11.9 30 170-199 121-150 (501)
167 3qne_A Seryl-tRNA synthetase, 62.7 29 0.00099 36.5 9.6 6 393-398 396-401 (485)
168 4fla_A Regulation of nuclear P 62.4 84 0.0029 27.8 11.5 77 101-177 71-147 (152)
169 2b5u_A Colicin E3; high resolu 62.3 1.6E+02 0.0055 31.1 18.7 20 78-97 326-345 (551)
170 1lwu_C Fibrinogen gamma chain; 62.2 15 0.00052 36.6 7.1 27 73-99 12-38 (323)
171 3onj_A T-snare VTI1; helix, HA 61.1 65 0.0022 26.1 12.3 62 69-135 30-92 (97)
172 3hd7_B Syntaxin-1A; membrane p 60.9 71 0.0024 26.5 10.7 54 143-196 20-73 (109)
173 1g6u_A Domain swapped dimer; d 60.7 39 0.0013 23.5 6.8 20 141-160 24-43 (48)
174 2yko_A LINE-1 ORF1P; RNA-bindi 59.3 15 0.00052 35.0 6.1 9 316-324 195-203 (233)
175 4etp_A Kinesin-like protein KA 59.3 27 0.00092 35.7 8.5 13 417-429 326-338 (403)
176 2avr_X Adhesion A; antiparalle 59.2 85 0.0029 26.9 13.2 22 42-63 6-27 (119)
177 2l5g_B Putative uncharacterize 58.6 14 0.00047 26.1 4.2 19 46-64 10-28 (42)
178 1gd2_E Transcription factor PA 58.6 36 0.0012 26.4 7.2 33 145-177 30-62 (70)
179 1oef_A Apolipoprotein E; glyco 58.5 7.9 0.00027 24.2 2.8 22 281-302 3-24 (26)
180 3cve_A Homer protein homolog 1 58.5 64 0.0022 25.2 11.0 52 110-164 8-59 (72)
181 2c5k_T Syntaxin TLG1, T-snare 58.5 28 0.00097 28.5 6.9 28 73-100 36-63 (95)
182 3uun_A Dystrophin; triple heli 58.4 67 0.0023 25.4 15.7 25 148-172 82-106 (119)
183 2ke4_A CDC42-interacting prote 57.8 73 0.0025 26.2 9.4 29 115-143 61-89 (98)
184 3m91_A Proteasome-associated A 57.7 37 0.0013 24.8 6.7 9 91-99 13-21 (51)
185 3k29_A Putative uncharacterize 57.5 1.1E+02 0.0038 27.6 23.1 56 108-163 70-125 (169)
186 2oqq_A Transcription factor HY 57.0 48 0.0016 23.3 6.7 27 146-172 5-31 (42)
187 1fxk_C Protein (prefoldin); ar 56.9 88 0.003 26.3 14.5 26 75-100 3-28 (133)
188 2lf0_A Uncharacterized protein 56.4 16 0.00055 31.3 5.2 23 43-65 8-30 (123)
189 2nrj_A HBL B protein; enteroto 56.3 53 0.0018 32.8 10.0 14 270-283 316-329 (346)
190 2p22_A Suppressor protein STP2 56.2 70 0.0024 29.1 9.8 13 315-327 146-158 (174)
191 3cl3_D NF-kappa-B essential mo 56.1 65 0.0022 27.9 9.0 22 78-99 28-49 (130)
192 4dk0_A Putative MACA; alpha-ha 56.0 54 0.0018 31.9 9.9 27 168-194 125-151 (369)
193 3qne_A Seryl-tRNA synthetase, 55.7 60 0.0021 34.1 10.6 30 171-200 77-106 (485)
194 2dq0_A Seryl-tRNA synthetase; 55.6 53 0.0018 34.0 10.2 32 169-200 73-104 (455)
195 3fpp_A Macrolide-specific effl 55.5 56 0.0019 31.4 9.9 16 181-196 130-145 (341)
196 3etw_A Adhesin A; antiparallel 55.4 99 0.0034 26.4 15.7 22 163-184 80-101 (119)
197 3iyk_A VP5; icosahedral virus; 54.8 2.1E+02 0.0073 30.1 18.6 16 383-398 365-380 (526)
198 3m9b_A Proteasome-associated A 54.8 11 0.00039 36.2 4.5 38 153-190 56-93 (251)
199 3plt_A Sphingolipid long chain 54.7 1.5E+02 0.005 28.2 14.9 59 45-103 62-120 (234)
200 3fpp_A Macrolide-specific effl 54.1 33 0.0011 33.1 7.9 33 164-196 120-152 (341)
201 2yy0_A C-MYC-binding protein; 53.5 7.3 0.00025 28.7 2.3 28 41-68 22-49 (53)
202 4fm3_A Uncharacterized hypothe 53.4 95 0.0032 25.7 10.8 63 111-180 31-93 (98)
203 1ik9_A DNA repair protein XRCC 53.0 1.5E+02 0.005 27.7 13.5 59 117-181 140-198 (213)
204 3tul_A Cell invasion protein S 53.0 81 0.0028 28.0 9.2 18 112-129 23-40 (158)
205 4dk0_A Putative MACA; alpha-ha 52.7 40 0.0014 32.9 8.3 6 207-212 173-178 (369)
206 1ses_A Seryl-tRNA synthetase; 52.2 33 0.0011 35.2 7.9 11 170-180 83-93 (421)
207 3ibp_A Chromosome partition pr 51.2 1.9E+02 0.0065 28.5 13.8 29 201-240 101-129 (302)
208 2ou1_A Apolipoprotein A-II; hi 50.6 10 0.00035 29.7 2.8 53 312-364 9-66 (77)
209 4b6x_A AVRRPS4, avirulence pro 50.4 96 0.0033 24.8 8.7 59 40-100 24-82 (90)
210 2ynz_A General control protein 50.2 49 0.0017 29.5 7.4 52 49-100 3-54 (154)
211 3m0d_C TNF receptor-associated 49.9 80 0.0028 23.8 8.4 13 50-62 11-23 (65)
212 3tul_A Cell invasion protein S 48.9 1.4E+02 0.0049 26.4 10.5 25 47-71 22-46 (158)
213 4dyl_A Tyrosine-protein kinase 48.7 1.9E+02 0.0064 29.1 12.8 43 170-212 357-399 (406)
214 2yy0_A C-MYC-binding protein; 48.0 18 0.0006 26.6 3.6 32 44-75 18-49 (53)
215 3u06_A Protein claret segregat 47.7 39 0.0013 34.7 7.5 53 48-100 6-58 (412)
216 2yo3_A General control protein 47.5 82 0.0028 30.6 9.2 43 58-100 215-257 (268)
217 1gd2_E Transcription factor PA 47.3 97 0.0033 24.0 8.2 19 151-169 29-47 (70)
218 4fi5_A Nucleoprotein; structur 47.1 1.3E+02 0.0045 25.4 10.4 14 127-140 26-39 (113)
219 3s9g_A Protein hexim1; cyclin 47.0 1.2E+02 0.0042 25.1 9.2 47 152-198 38-84 (104)
220 3l4q_C Phosphatidylinositol 3- 46.8 1.7E+02 0.0057 26.5 16.6 9 117-125 60-68 (170)
221 1hjb_A Ccaat/enhancer binding 46.2 95 0.0032 25.0 8.1 13 170-182 55-67 (87)
222 3mtu_A Tropomyosin alpha-1 cha 45.6 38 0.0013 26.5 5.5 41 47-87 4-51 (75)
223 1t3j_A Mitofusin 1; coiled coi 45.5 1E+02 0.0035 25.4 8.2 7 89-95 56-62 (96)
224 3trt_A Vimentin; cytoskeleton, 45.4 1E+02 0.0034 23.6 10.4 10 45-54 9-18 (77)
225 1j1d_C Troponin I, TNI; THIN f 45.4 52 0.0018 28.7 6.8 33 68-100 74-106 (133)
226 3r6n_A Desmoplakin; spectrin r 45.3 2.7E+02 0.0093 28.6 20.4 88 111-198 167-268 (450)
227 4e61_A Protein BIM1; EB1-like 44.3 1.4E+02 0.0048 25.0 10.0 17 160-176 34-50 (106)
228 2wq1_A General control protein 44.0 43 0.0015 22.3 4.5 23 77-99 4-26 (33)
229 4dzn_A Coiled-coil peptide CC- 43.7 35 0.0012 22.1 4.0 15 49-63 6-20 (33)
230 2lf0_A Uncharacterized protein 43.6 58 0.002 27.9 6.6 47 80-129 10-56 (123)
231 3m9b_A Proteasome-associated A 43.2 22 0.00076 34.2 4.5 42 158-199 54-95 (251)
232 2dq3_A Seryl-tRNA synthetase; 43.1 33 0.0011 35.2 6.2 28 75-102 32-59 (425)
233 2z5i_A TM, general control pro 42.8 94 0.0032 22.6 7.4 18 148-165 9-26 (52)
234 1g6u_A Domain swapped dimer; d 42.5 84 0.0029 21.9 6.9 26 73-98 20-45 (48)
235 1zxa_A CGMP-dependent protein 42.5 32 0.0011 26.6 4.5 36 49-84 15-50 (67)
236 3lss_A Seryl-tRNA synthetase; 42.4 1.3E+02 0.0043 31.6 10.5 27 174-200 113-139 (484)
237 1j1d_B Troponin T, TNT; THIN f 42.2 51 0.0017 27.6 6.1 43 57-99 47-89 (106)
238 3ajw_A Flagellar FLIJ protein; 42.2 1.5E+02 0.0052 24.8 17.0 41 116-156 74-114 (150)
239 3faj_A ORF131, putative unchar 41.2 31 0.0011 29.8 4.6 63 284-346 67-132 (151)
240 1sjj_A Actinin; 3-helix bundle 41.1 3.8E+02 0.013 29.1 23.8 27 351-377 573-599 (863)
241 4fm3_A Uncharacterized hypothe 41.0 1.5E+02 0.0052 24.4 9.0 31 144-174 64-94 (98)
242 1jth_B Syntaxin 1A; coiled-coi 40.1 1.2E+02 0.0043 23.2 10.7 56 141-196 7-62 (77)
243 1n7s_B Syntaxin 1A; neuronal s 40.0 1.2E+02 0.004 22.8 10.2 57 140-196 8-64 (68)
244 4dnd_A Syntaxin-10, SYN10; str 39.7 1.8E+02 0.0062 24.9 11.6 29 72-100 66-94 (130)
245 3uul_A Utrophin; spectrin repe 39.6 1.4E+02 0.0048 23.6 14.7 20 149-168 83-102 (118)
246 3iyk_A VP5; icosahedral virus; 39.5 3.6E+02 0.012 28.4 19.6 12 354-365 425-436 (526)
247 3ni0_A Bone marrow stromal ant 38.9 1.6E+02 0.0056 24.2 10.6 12 174-185 69-80 (99)
248 2wt7_B Transcription factor MA 38.0 1.6E+02 0.0055 23.9 10.9 24 123-146 21-44 (90)
249 2xv5_A Lamin-A/C; structural p 37.5 1.3E+02 0.0044 23.5 7.4 27 44-70 4-30 (74)
250 3uun_A Dystrophin; triple heli 37.5 1.5E+02 0.0051 23.3 12.8 20 156-175 83-102 (119)
251 1ytz_T Troponin T; muscle, THI 37.0 65 0.0022 27.0 5.9 28 72-99 62-89 (107)
252 1gl2_B Syntaxin 7; membrane pr 36.8 1.3E+02 0.0044 22.4 8.9 54 143-196 8-61 (65)
253 4e61_A Protein BIM1; EB1-like 36.5 1.9E+02 0.0065 24.2 10.9 45 113-157 15-59 (106)
254 3he5_B Synzip2; heterodimeric 36.4 1.1E+02 0.0038 21.6 6.9 10 121-130 8-17 (52)
255 3b5n_B Protein SSO1; snare com 35.8 1.4E+02 0.0048 22.5 10.7 56 141-196 7-62 (69)
256 2xv5_A Lamin-A/C; structural p 35.7 1.6E+02 0.0053 23.0 8.2 13 120-132 16-28 (74)
257 2wps_A Trimeric autotransporte 35.5 1.9E+02 0.0066 24.0 13.4 19 117-135 59-77 (107)
258 1lrz_A FEMA, factor essential 35.2 63 0.0022 32.6 6.8 57 71-136 245-301 (426)
259 2q6q_A Spindle POLE BODY compo 34.7 1.6E+02 0.0054 22.8 9.5 12 123-134 10-21 (74)
260 2f1m_A Acriflavine resistance 34.0 2.3E+02 0.0079 26.1 10.1 15 108-122 97-111 (277)
261 1vcs_A Vesicle transport throu 33.4 1.9E+02 0.0067 23.4 8.9 8 92-99 21-28 (102)
262 1j1e_C Troponin I, TNI; THIN f 33.4 95 0.0032 28.4 6.8 33 68-100 74-106 (180)
263 1lrz_A FEMA, factor essential 33.2 98 0.0034 31.2 7.8 26 108-133 246-271 (426)
264 2w6a_A ARF GTPase-activating p 33.1 1.3E+02 0.0045 22.7 6.3 23 42-64 10-32 (63)
265 3zx6_A HAMP, methyl-accepting 33.0 3.5E+02 0.012 26.3 25.1 9 234-242 315-323 (341)
266 2ic9_A Nucleocapsid protein; h 32.9 2.1E+02 0.007 23.6 10.4 11 114-124 24-34 (96)
267 3ljm_A Coil Ser L9C; de novo d 32.9 79 0.0027 20.2 4.3 11 151-161 8-18 (31)
268 1gl2_B Syntaxin 7; membrane pr 32.7 1.5E+02 0.0052 22.0 8.8 57 68-132 4-60 (65)
269 2ic6_A Nucleocapsid protein; h 32.3 1.9E+02 0.0064 22.9 10.5 17 110-126 20-36 (78)
270 3gp4_A Transcriptional regulat 32.3 2E+02 0.0068 24.6 8.6 33 157-189 87-119 (142)
271 3hd7_B Syntaxin-1A; membrane p 32.2 2.1E+02 0.0072 23.5 12.1 53 141-193 25-77 (109)
272 2z5i_A TM, general control pro 32.1 1.4E+02 0.0049 21.6 6.9 23 113-135 9-31 (52)
273 2nps_D Syntaxin-6; vesicle fus 32.0 1.8E+02 0.0061 22.6 7.9 27 163-189 38-64 (82)
274 2wt7_B Transcription factor MA 32.0 2E+02 0.007 23.3 10.9 30 148-177 52-81 (90)
275 3lay_A Zinc resistance-associa 32.0 2.8E+02 0.0097 24.9 10.0 26 50-75 76-101 (175)
276 1fzc_C Fibrin; blood coagulati 32.0 47 0.0016 33.0 4.9 32 68-99 13-44 (319)
277 1dh3_A Transcription factor CR 31.3 81 0.0028 23.1 5.0 30 72-101 21-50 (55)
278 4abx_A DNA repair protein RECN 31.2 2.7E+02 0.0093 24.4 12.2 41 137-177 122-162 (175)
279 1jnm_A Proto-oncogene C-JUN; B 30.9 62 0.0021 24.0 4.4 10 162-171 33-42 (62)
280 1gk6_A Vimentin; intermediate 30.9 1.6E+02 0.0055 21.7 8.5 43 115-157 6-48 (59)
281 4dzn_A Coiled-coil peptide CC- 30.8 1.1E+02 0.0037 19.8 4.8 16 124-139 10-25 (33)
282 1u00_A HSC66, chaperone protei 30.7 3.2E+02 0.011 25.1 10.7 29 72-100 135-163 (227)
283 2nps_B Syntaxin 13, vesicle-as 29.6 1.8E+02 0.0062 21.9 10.0 54 143-196 5-58 (71)
284 2w6a_A ARF GTPase-activating p 29.5 1.8E+02 0.0062 21.9 6.8 21 80-100 27-47 (63)
285 2dq3_A Seryl-tRNA synthetase; 29.4 92 0.0031 31.8 6.8 26 72-97 36-61 (425)
286 3n1e_A Vacuolar protein sortin 29.2 1.8E+02 0.0063 25.4 7.8 73 258-332 20-99 (141)
287 1f5n_A Interferon-induced guan 28.8 5.5E+02 0.019 27.3 17.7 12 182-193 570-581 (592)
288 1nkp_B MAX protein, MYC proto- 28.8 97 0.0033 24.1 5.4 34 113-146 44-77 (83)
289 1hs7_A Syntaxin VAM3; UP-and-D 28.7 2.4E+02 0.0083 23.1 10.1 17 80-96 10-26 (97)
290 1f5n_A Interferon-induced guan 28.6 5.6E+02 0.019 27.3 19.3 34 131-164 488-521 (592)
291 1x4t_A Hypothetical protein LO 28.2 2E+02 0.0067 23.5 7.2 18 87-104 32-49 (92)
292 3d5a_X RF1, peptide chain rele 28.1 4E+02 0.014 26.7 11.0 15 54-68 5-19 (354)
293 1ytz_T Troponin T; muscle, THI 27.1 1.2E+02 0.0042 25.3 6.0 45 41-85 45-89 (107)
294 3swf_A CGMP-gated cation chann 26.9 2.3E+02 0.0078 22.2 8.1 23 78-100 5-27 (74)
295 2gtv_X CM, chorismate mutase; 26.8 47 0.0016 27.6 3.3 30 211-241 24-57 (104)
296 3gwk_C SAG1039, putative uncha 26.8 2.2E+02 0.0075 21.9 13.3 40 149-188 53-92 (98)
297 2c5k_T Syntaxin TLG1, T-snare 26.5 1.5E+02 0.0052 24.0 6.3 16 84-99 40-55 (95)
298 2p22_C Protein SRN2; endosome, 26.5 3.7E+02 0.013 24.5 15.3 15 220-234 175-189 (192)
299 1z56_A Ligase interacting fact 26.3 50 0.0017 31.5 3.8 64 40-103 159-230 (246)
300 3ok8_A Brain-specific angiogen 26.1 1.8E+02 0.006 27.4 7.5 95 283-389 5-106 (222)
301 3viq_B Mating-type switching p 26.0 63 0.0022 26.1 3.8 11 51-61 14-24 (85)
302 1buu_A Protein (mannose-bindin 25.7 54 0.0018 28.4 3.8 20 42-61 20-39 (168)
303 2bsg_A Fibritin; viral protein 25.4 1.9E+02 0.0065 30.3 8.2 62 40-101 49-115 (487)
304 2wps_A Trimeric autotransporte 25.3 2.9E+02 0.01 22.9 13.4 7 153-159 78-84 (107)
305 1sfc_B Protein (syntaxin 1A), 25.0 2.4E+02 0.0083 21.9 10.7 56 141-196 18-73 (83)
306 2yo3_A General control protein 24.8 1.9E+02 0.0063 28.1 7.5 40 64-103 214-253 (268)
307 3onj_A T-snare VTI1; helix, HA 24.4 2.8E+02 0.0095 22.3 13.5 9 91-99 16-24 (97)
308 3d2f_A Heat shock protein homo 23.8 4E+02 0.014 28.7 10.9 27 72-98 543-569 (675)
309 2l5g_A GPS2 protein, G protein 23.2 1.3E+02 0.0045 20.6 4.3 12 124-135 16-27 (38)
310 1gk6_A Vimentin; intermediate 23.1 1.6E+02 0.0055 21.7 5.4 19 50-68 5-23 (59)
311 3vp9_A General transcriptional 23.1 2.2E+02 0.0075 23.2 6.6 14 121-134 73-86 (92)
312 2wt7_A Proto-oncogene protein 23.0 2.3E+02 0.008 20.9 10.5 30 155-184 27-56 (63)
313 1nkp_A C-MYC, MYC proto-oncoge 22.5 2.6E+02 0.0088 22.2 6.9 32 113-144 49-80 (88)
314 3d5a_X RF1, peptide chain rele 22.3 2.4E+02 0.0083 28.3 8.2 19 171-189 75-93 (354)
315 1pl5_A Regulatory protein SIR4 22.3 3.5E+02 0.012 22.7 9.6 45 54-98 62-106 (142)
316 2r2v_A GCN4 leucine zipper; co 22.2 1.4E+02 0.0048 20.0 4.2 14 150-163 7-20 (34)
317 1nlw_A MAD protein, MAX dimeri 21.6 1.8E+02 0.0063 22.7 5.8 32 113-144 44-75 (80)
318 2f1m_A Acriflavine resistance 21.5 4.7E+02 0.016 23.9 9.8 6 207-212 149-154 (277)
319 1lq7_A Alpha3W; three helix bu 21.5 1.6E+02 0.0055 21.7 4.9 13 162-174 29-41 (67)
320 3i2w_A Syndapin, LD46328P; EFC 21.4 4.5E+02 0.015 24.4 9.7 30 155-184 192-221 (290)
321 2ynz_A General control protein 21.4 2.6E+02 0.0088 24.9 7.1 44 56-99 3-46 (154)
322 2kho_A Heat shock protein 70; 21.2 3.1E+02 0.01 29.0 9.3 30 73-102 527-556 (605)
323 4etp_B Spindle POLE BODY-assoc 21.2 3E+02 0.01 27.4 8.4 31 125-155 5-35 (333)
324 3q0x_A Centriole protein; cent 20.9 5.1E+02 0.017 24.3 9.7 40 148-187 175-214 (228)
325 1zbt_A RF-1, peptide chain rel 20.9 1.9E+02 0.0066 29.2 7.1 11 175-185 97-107 (371)
326 2bni_A General control protein 20.8 1.1E+02 0.0037 20.5 3.5 9 151-159 8-16 (34)
327 2y3a_B Phosphatidylinositol 3- 20.7 5.9E+02 0.02 24.7 10.9 11 86-96 59-69 (302)
328 3zbh_A ESXA; unknown function, 20.7 2.8E+02 0.0097 21.0 13.8 37 151-187 56-92 (99)
329 2js5_A Uncharacterized protein 20.6 3E+02 0.01 21.4 6.6 28 68-95 5-32 (71)
330 1gl2_D Syntaxin 8, vesicle tra 20.6 2.6E+02 0.0088 20.5 8.2 19 167-185 32-50 (65)
331 3kqg_A Langerin, C-type lectin 20.3 1.3E+02 0.0045 25.9 5.3 12 122-133 5-16 (182)
332 1nyh_A Regulatory protein SIR4 20.3 4.1E+02 0.014 22.8 10.0 40 58-97 90-129 (166)
333 3csx_A Putative uncharacterize 20.3 3.3E+02 0.011 21.7 7.4 30 67-96 16-45 (81)
334 2nps_D Syntaxin-6; vesicle fus 20.2 3E+02 0.01 21.2 8.7 41 47-87 21-61 (82)
335 1cxz_B Protein (PKN); protein- 20.2 3.4E+02 0.012 21.8 9.0 24 113-136 60-83 (86)
336 2aze_B Transcription factor E2 20.2 1.1E+02 0.0039 25.3 4.5 16 47-62 8-23 (106)
337 1avy_A Fibritin, gpwac M; bact 20.2 1.4E+02 0.0047 23.3 4.5 14 87-100 29-42 (74)
338 2ap3_A Conserved hypothetical 20.1 5.1E+02 0.018 23.8 15.1 25 45-69 33-57 (199)
No 1
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=99.24 E-value=2e-11 Score=118.46 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=108.6
Q ss_pred chHHHHHHHHHHHHHHcCccccchHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhh
Q 012833 235 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVV 314 (455)
Q Consensus 235 P~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~ 314 (455)
|+++++..+..+.++ .++.++.|++.+ ++.++..||+++++++.|+.+.+|+.+..|++.+++.+
T Consensus 121 P~~eel~~~~~~~~e-----------el~~~L~p~~ee----lr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l 185 (243)
T 2a01_A 121 PLRAELQEGARQKLH-----------ELQEKLSPLGEE----MRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENG 185 (243)
T ss_dssp HHHHHHHHHHHHHHH-----------HHCCSCCSSTHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHH-----------HHHHHHHhHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 566777777777777 888999999988 99999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhhhHHHHHHhhccchhHhHHHhhcchHHHHHHHHHHHHHHHH
Q 012833 315 DPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKFLKSAT 366 (455)
Q Consensus 315 ~Py~~e~k~~~~py~~qa~~~~~p~~~~~~~~~~P~~~~v~~~~~~~~~~a~ 366 (455)
.||++++++.+.|++++++....||.+.++..+.||++.++..+..++++..
T Consensus 186 ~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~~e~~~ 237 (243)
T 2a01_A 186 GARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYT 237 (243)
T ss_dssp HHTTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877654
No 2
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=99.08 E-value=2e-09 Score=106.26 Aligned_cols=66 Identities=15% Similarity=0.340 Sum_probs=44.9
Q ss_pred HHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHHH
Q 012833 261 TIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYID 330 (455)
Q Consensus 261 ~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~~ 330 (455)
.++.++.|+..+ ++.++..||++++..+.|+.+.+|+.++.|++.+++.+.||+++++..+..+++
T Consensus 92 eLr~~L~p~~ee----lr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l~P~ae~~~~kl~~~~e 157 (273)
T 3s84_A 92 SLQASLRPHADE----LKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLE 157 (273)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 666677777666 677777777777777777777777777777777777777776666665444433
No 3
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=98.89 E-value=3.6e-07 Score=90.03 Aligned_cols=15 Identities=20% Similarity=0.005 Sum_probs=7.8
Q ss_pred chHHHHHHHHHHHHH
Q 012833 235 PAMDVAIQKALEKKA 249 (455)
Q Consensus 235 P~~~~~~~k~~~~~~ 249 (455)
|.++++..+..+.++
T Consensus 121 Py~eelr~k~~~~le 135 (273)
T 3s84_A 121 PYADEFKVKIDQTVE 135 (273)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 445555555555444
No 4
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=98.86 E-value=2.5e-09 Score=103.68 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHHHHcCccccchHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhh
Q 012833 235 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVV 314 (455)
Q Consensus 235 P~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~ 314 (455)
|..+++..+....++ .++.++.|++.+ +++.+..|++++++++.|+.+.+|+.+..+|+.+++.+
T Consensus 99 Py~~el~~~~~~~~e-----------elr~~L~P~~ee----l~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l 163 (243)
T 2a01_A 99 PYLDDFQKKWQEEME-----------LYRQKVEPLRAE----LQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHL 163 (243)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHTTHHHHHHH----HHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHH-----------HHHHHHHHHHHH----HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 556678778777777 666666666665 56666666666666666666666666666666666666
Q ss_pred chhHHHHhhhhhhHHHHHHhhccch-----------hHhHHHhhcchHHHHHHHHHHHHHHHH
Q 012833 315 DPYFQEAKKFSKPYIDQVATVAKPH-----------VDNVRVALKPYTKKVVRAYGKFLKSAT 366 (455)
Q Consensus 315 ~Py~~e~k~~~~py~~qa~~~~~p~-----------~~~~~~~~~P~~~~v~~~~~~~~~~a~ 366 (455)
.||+++++..+.-.+++.+....|| ++.++..+.||++.++..+.++++...
T Consensus 164 ~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~ 226 (243)
T 2a01_A 164 APYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFK 226 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Confidence 6666666666666666666655555 666666677777776666666655443
No 5
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=98.86 E-value=2.9e-09 Score=101.44 Aligned_cols=113 Identities=14% Similarity=0.177 Sum_probs=82.0
Q ss_pred cchHHHHHHHHHHHHHHcCccccchHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhh
Q 012833 234 KPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEV 313 (455)
Q Consensus 234 ~P~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~ 313 (455)
.|..+++..+..+.++ .++.++.|++.+ +++.+..|+++++.++.|+.+.+|+.+..|++.+++.
T Consensus 97 ~py~~el~~~~~~~~e-----------~lr~~L~Py~~e----l~~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~ 161 (216)
T 2lem_A 97 QPYLDEFQKKWKEDVE-----------LYRQKASPQGAE----LQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQ 161 (216)
T ss_dssp TTTCCHHHHHHHHHHH-----------HHHHHTSCHHHH----HHHHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHH-----------HHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777666666 777777777777 7777777777888888888888888888888888888
Q ss_pred hchhHHHHhhhhhhHHHHHHhhccchhHhHHHhhcchHHHHHHHHHHHHH
Q 012833 314 VDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKFLK 363 (455)
Q Consensus 314 ~~Py~~e~k~~~~py~~qa~~~~~p~~~~~~~~~~P~~~~v~~~~~~~~~ 363 (455)
+.||+++++..+...+++.+.. ||++.+++.+.|+++.++..+.||++
T Consensus 162 l~P~~ee~~~kl~~~leeL~~~--p~~~e~~~ki~~~~e~Lr~~l~P~~e 209 (216)
T 2lem_A 162 LAPHSEQMRESLAQRLAELKSN--PTLNEYHSSAKSHLKSLGEKARPALE 209 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCSSSHHHHHHHTSCTTTH
T ss_pred hHhhHHHHHHHHHHHHHHHhCC--cchHHHHHHHHHHHHHHHHHhhhhHH
Confidence 8888888888888888877775 66666666666666555555555543
No 6
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=98.79 E-value=3.7e-08 Score=92.38 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=48.4
Q ss_pred HHHHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHHHHHHhhccc
Q 012833 259 VETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKP 338 (455)
Q Consensus 259 ~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~~qa~~~~~p 338 (455)
|+.++.++.|+..+ ++..+.+|+++++.++.|+.+.+|+.+..+++.++..+.||++++++.+.+.++.++....|
T Consensus 108 lEelr~kL~P~~eE----L~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~eelk~~l~~~veel~~~L~P 183 (191)
T 1nfn_A 108 MEDVCGRLVQYRGE----VQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGP 183 (191)
T ss_dssp HHHHHHHHHHHHHH----HHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------
T ss_pred HHHHHHHhhHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 34888888888888 88888888888888888888888888888888888888888888888888777766666666
Q ss_pred hhHhHHH
Q 012833 339 HVDNVRV 345 (455)
Q Consensus 339 ~~~~~~~ 345 (455)
|++.+++
T Consensus 184 ~~e~~r~ 190 (191)
T 1nfn_A 184 LVEQGRV 190 (191)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 6665543
No 7
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=98.73 E-value=3.7e-08 Score=92.31 Aligned_cols=113 Identities=6% Similarity=0.068 Sum_probs=69.2
Q ss_pred HcCccccchHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHH
Q 012833 250 QAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYI 329 (455)
Q Consensus 250 ~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~ 329 (455)
....=+.|+.+.+..+|.|.+.. ++..+.-++|++++++.|+.+.+++.+.+|++.++..+.||+.++++.+...+
T Consensus 77 ~l~~qL~P~~~e~~~~l~~~~e~----lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~ 152 (191)
T 1nfn_A 77 ELEEQLTPVAEETRARLSKELQA----AQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDA 152 (191)
T ss_dssp HHTTC----------CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33444778888888888888877 77777889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccchhHhHHHhhcchHHHHHHHHHHHHHHHH
Q 012833 330 DQVATVAKPHVDNVRVALKPYTKKVVRAYGKFLKSAT 366 (455)
Q Consensus 330 ~qa~~~~~p~~~~~~~~~~P~~~~v~~~~~~~~~~a~ 366 (455)
++.+....||++.+++.+..+++.++..+.||++...
T Consensus 153 eeLr~~l~P~~eelk~~l~~~veel~~~L~P~~e~~r 189 (191)
T 1nfn_A 153 DDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGR 189 (191)
T ss_dssp HHHHHHHHHHTC-------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHh
Confidence 9999999999999999999999999999999887643
No 8
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=98.67 E-value=4.9e-08 Score=90.76 Aligned_cols=85 Identities=8% Similarity=0.138 Sum_probs=39.9
Q ss_pred hhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHHHHHHhhccchhHhHHHhhcchHHHHHH
Q 012833 277 FTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVR 356 (455)
Q Consensus 277 ~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~~qa~~~~~p~~~~~~~~~~P~~~~v~~ 356 (455)
+++.+..++++++.++.|+...++..+..|++.++..+.||+.++++.+..-+++.+....||++.+++.+..+++.++.
T Consensus 83 Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~ 162 (185)
T 3r2p_A 83 LRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRT 162 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHH
Q 012833 357 AYGKF 361 (455)
Q Consensus 357 ~~~~~ 361 (455)
.+.||
T Consensus 163 ~l~Py 167 (185)
T 3r2p_A 163 HLAPY 167 (185)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 44444
No 9
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=98.65 E-value=3.9e-08 Score=91.47 Aligned_cols=114 Identities=19% Similarity=0.294 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHHHHHcCccccchHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhh
Q 012833 235 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVV 314 (455)
Q Consensus 235 P~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~ 314 (455)
|..+++..+-....+ .++.++..-+++ ++..+.||++++++++-+-++.+|..+.||+..+++.+
T Consensus 67 p~~~e~~~~l~~~~~-----------~Lr~~l~kdlee----~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~ 131 (185)
T 3r2p_A 67 PVTQEFWDNLEKETE-----------GLRQEMSKDLEE----VKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGA 131 (185)
T ss_dssp SCCHHHHHHHHHHHH-----------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH-----------HHHHHHhccHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 555555554444443 455555555555 66777777777777777777777777777777777777
Q ss_pred chhHHHHhhhhhhHHHHHHhhccchhHhHHHhhcchHHHHHHHHHHHHH
Q 012833 315 DPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKFLK 363 (455)
Q Consensus 315 ~Py~~e~k~~~~py~~qa~~~~~p~~~~~~~~~~P~~~~v~~~~~~~~~ 363 (455)
...+++-+..+.||.++.++....++|.+++.+.||++.++..+..-++
T Consensus 132 ~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py~ee~k~kl~~~le 180 (185)
T 3r2p_A 132 RQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLE 180 (185)
T ss_dssp HHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7777777777777777777777777788888888888888777665543
No 10
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.60 E-value=2.2e-05 Score=73.18 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
+..+..++.++..+...+.++..++......+...+..+......+..+...+..+.
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444443
No 11
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.58 E-value=2.6e-05 Score=72.62 Aligned_cols=55 Identities=7% Similarity=0.166 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
.+++.+...+..+..++..+...+......+..+...+......+..+...+..+
T Consensus 13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (284)
T 1c1g_A 13 LDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDA 67 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444333
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.56 E-value=2.1e-05 Score=76.43 Aligned_cols=98 Identities=12% Similarity=0.176 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA-EQVDKAHARADEL 121 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~-eei~~Ae~~i~eL 121 (455)
+..++..+..++..++..+..++..+.....++.+++..+..++..|.++...|...+++...+++ +++..+..+|..+
T Consensus 23 l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~ 102 (256)
T 3na7_A 23 LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIA 102 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 345555566666666777777777777777777777777777777777777777666666554422 2333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 122 EKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 122 e~qIe~LkkeLE~~~~e~e 140 (455)
..++..+++++......++
T Consensus 103 ~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 103 KERSNQANREIENLQNEIK 121 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 13
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=98.49 E-value=2.8e-07 Score=92.24 Aligned_cols=115 Identities=8% Similarity=0.101 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHHHHHcCccccchHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhh-------------
Q 012833 235 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKT------------- 301 (455)
Q Consensus 235 P~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~------------- 301 (455)
|..+++..+....++ .++.++.|++.+ ++.++..||++++..+.|+.+.+++
T Consensus 147 Py~~EL~~~~~~~~e-----------eLr~~L~py~ee----Lr~kl~~~veelr~~L~Py~e~~~~~~~~v~~~k~~~L 211 (307)
T 2l7b_A 147 SHLRKLRKRLLRDAD-----------DLQKRLAVYQAG----AREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPL 211 (307)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHTSC----CSSHHHHHHHHHHHHCSSSCTTTTTHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhhHH-----------HHHHHHhhHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHH
Confidence 566677777777777 888899999888 8888888888888888888776544
Q ss_pred --hcchhHHHHHhhhchhH--------------HHHhhhhhhHHHHHHhhccchhHhHHHhhcchHHHHHHHHHHHHHH
Q 012833 302 --AVTPHIIRVQEVVDPYF--------------QEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKFLKS 364 (455)
Q Consensus 302 --~~~p~~~~~~~~~~Py~--------------~e~k~~~~py~~qa~~~~~p~~~~~~~~~~P~~~~v~~~~~~~~~~ 364 (455)
++.|+++.+++.+.||. ++++..++--.++++....|+++.++..+.||++.++..+.++++.
T Consensus 212 ~~ki~~~~e~Lr~~L~p~~~~~~~~l~~l~~q~ee~~~ql~~~aeel~~kl~~~~eeLr~~l~P~~e~lk~~l~~l~E~ 290 (307)
T 2l7b_A 212 QERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAAQARLKSRFEPLAEDMQRQWAGQVEK 290 (307)
T ss_dssp SSCSCCHHHHHHHHHHHHHHTCSCSSCCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHTTSSCC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44788888887777765 6678888888888888899999999999999999988888776543
No 14
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=98.44 E-value=8.7e-08 Score=87.91 Aligned_cols=89 Identities=11% Similarity=0.131 Sum_probs=56.5
Q ss_pred HHHHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHHHHHHhhccc
Q 012833 259 VETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKP 338 (455)
Q Consensus 259 ~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~~qa~~~~~p 338 (455)
++.++.++.|+..+ ++..+.-.++.++.++.|..+.+|+.+.||+..++..+.||+.+++..+.||+++.++-...
T Consensus 75 ~~~l~~~L~P~t~e----l~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~ 150 (165)
T 1gs9_A 75 KSELEEQLTPVAEE----TRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLR 150 (165)
T ss_dssp HHHHTTSCCCCCSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666555 44444445566666666666666666666666666666666666666666666666666666
Q ss_pred hhHhHHHhhcchH
Q 012833 339 HVDNVRVALKPYT 351 (455)
Q Consensus 339 ~~~~~~~~~~P~~ 351 (455)
+++.++..+.||+
T Consensus 151 ~~eeLr~kL~p~~ 163 (165)
T 1gs9_A 151 DADDLQKRLAVYQ 163 (165)
T ss_dssp HHHHHHHHHHHSS
T ss_pred hHHHHHHHhhhhc
Confidence 6666666666664
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.41 E-value=3.8e-05 Score=74.57 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI 174 (455)
.+.|.++++.+...+..++.+..++..+++.++..++.++..+++.+..+
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444433343444433333333333333333333333333333
No 16
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=98.41 E-value=1.8e-07 Score=89.08 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=37.7
Q ss_pred hhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHHHHHHhhccchhHhHHHhhcchHHHHHH
Q 012833 277 FTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVR 356 (455)
Q Consensus 277 ~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~~qa~~~~~p~~~~~~~~~~P~~~~v~~ 356 (455)
++..+.||.+++++++-+-.+.+|..+.||+..+++.+...+++.+..+.||.++.+.....+++.+++.+.||++.++.
T Consensus 92 ~r~~l~py~~el~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~~ 171 (216)
T 2lem_A 92 VKQKVQPYLDEFQKKWKEDVELYRQKASPQGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMRE 171 (216)
T ss_dssp HHHHTTTTCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444433
Q ss_pred H
Q 012833 357 A 357 (455)
Q Consensus 357 ~ 357 (455)
.
T Consensus 172 k 172 (216)
T 2lem_A 172 S 172 (216)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=98.39 E-value=3.8e-07 Score=91.28 Aligned_cols=104 Identities=10% Similarity=0.131 Sum_probs=74.9
Q ss_pred ccchHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHHHHHHh
Q 012833 255 VQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVAT 334 (455)
Q Consensus 255 ~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~~qa~~ 334 (455)
+.+.++.++.++.|...+ +.+.+.-|++.++.++.|+.+.+|+.+..+++.|+..+.||..+.++.+..-++..+.
T Consensus 112 L~~dlEelR~~L~Py~~e----l~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~ 187 (307)
T 2l7b_A 112 LGADMEDVCGRLVQYRGE----VQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRE 187 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 336666777777777777 7777777777777777777777777777777777777777777777777777777777
Q ss_pred hccchhHhHHHhh---------------cchHHHHHHHHHHHH
Q 012833 335 VAKPHVDNVRVAL---------------KPYTKKVVRAYGKFL 362 (455)
Q Consensus 335 ~~~p~~~~~~~~~---------------~P~~~~v~~~~~~~~ 362 (455)
...||.+.++..+ .||++.++..+.++.
T Consensus 188 ~L~Py~e~~~~~~~~v~~~k~~~L~~ki~~~~e~Lr~~L~p~~ 230 (307)
T 2l7b_A 188 RLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMG 230 (307)
T ss_dssp HCSSSCTTTTTHHHHHHHHHCCCCSSCSCCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 7777776666554 777777777777764
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.96 E-value=1.9e-05 Score=91.65 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ 83 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~ 83 (455)
+..++..++.++..++..+.+++.++..+..++..+...+.
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443333
No 19
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.94 E-value=2.2e-05 Score=91.18 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
..++..++.++..++..+..++..+.+.+..+..++..+.+....+......+..++
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e 912 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777776666666666666666666666555555544444443
No 20
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=97.88 E-value=1.8e-05 Score=72.46 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=50.1
Q ss_pred hhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHHHHHHhhccchhHhHHHhhcchHHHHHHHHHH
Q 012833 283 PHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGK 360 (455)
Q Consensus 283 p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~~qa~~~~~p~~~~~~~~~~P~~~~v~~~~~~ 360 (455)
.|++.+..++.|+.+.+++.++..++.+++.+.|+++++|..+.||.++.+....||++.++..+.||+++.+.....
T Consensus 73 ~~~~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~ 150 (165)
T 1gs9_A 73 AYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLR 150 (165)
T ss_dssp HHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666666666666666666666666666666666666666666666666554433
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.86 E-value=0.00026 Score=81.47 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 54 IRSLESHIDEKTQELKGKDEVVAQKEKAI----QDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (455)
Q Consensus 54 I~~Leski~ele~eI~~k~~eIk~~e~~I----~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~Lk 129 (455)
..+|+.++.+++..+++.+++..++...+ ...+.++.+|+.+++.++. .+.+...+++++..|+++++.++
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~-----~~~e~~~~~~~v~~L~~e~~~l~ 997 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM-----SEEEAKNATNRVLSLQEEIAKLR 997 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444444333 3445566666666665543 13444566677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (455)
Q Consensus 130 keLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEe 186 (455)
++++...++...++.+...+. .+++.++..|++++..+++++++++..+...++
T Consensus 998 ~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 998 KELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776665555 355566666666666666666666655555544
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.71 E-value=0.0046 Score=57.59 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 79 EKAIQDKSERIVSLQKELSSLQKKETLNAAE---QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISD 155 (455)
Q Consensus 79 e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~e---ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~E 155 (455)
+..|...++.+.+|++++..+.......+++ ....+...++.|+.++..|....+.+...+-.+|....++|...--
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 127 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444455555555544444443333221 2223444566666666666666666666666666666666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh
Q 012833 156 LSAKLEKLQKINDEQKSKIRKTERALK---VAEEEMMRAKFEATSR 198 (455)
Q Consensus 156 leskveeLek~~eEqekkI~elE~~Lq---~lEeeL~kaq~E~~~~ 198 (455)
....+++++...+..-.++.=++..+. .+..++++++-+...+
T Consensus 128 ~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDL 173 (189)
T 2v71_A 128 TIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDL 173 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544333333333333 2223333444444433
No 23
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.68 E-value=0.02 Score=51.79 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (455)
Q Consensus 123 ~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL 188 (455)
.+-+.++.+|..+...+...+.++...+..+..++..++.++..+...+.....+...+..+-.++
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el 135 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555555555555555555555444444444444443333
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.58 E-value=0.0011 Score=70.39 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=14.3
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 67 ELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (455)
Q Consensus 67 eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~s 98 (455)
++.+++.++..++..+...+..++.+..+|+.
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~ 488 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT 488 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444444444444444444444443
No 25
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.44 E-value=0.022 Score=51.48 Aligned_cols=91 Identities=23% Similarity=0.239 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe 122 (455)
+..+|+.........++++.+++.++......++.++..-.+.+..-..+..+|..|+.+.... +.....++..+..|+
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA-E~RAE~AERsv~kLE 104 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA-ETRAEFAERSVTKLE 104 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666666666666666666666666666665443331 333333444444444
Q ss_pred HHHHHHHHHHHH
Q 012833 123 KQIDNLKKESEK 134 (455)
Q Consensus 123 ~qIe~LkkeLE~ 134 (455)
..|++|+.++..
T Consensus 105 k~id~lEd~L~~ 116 (155)
T 2efr_A 105 KSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444433333
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.42 E-value=0.0036 Score=72.07 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 012833 48 DQLKSKIRSLESHIDEKTQELKGKDEVVA----QKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~k~~eIk----~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~ 123 (455)
..+..+|..|+.++.+.+.+..++.+.+. .++.++.++..++.+++....... . .++++..+++++.++++
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~----~-~~~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK----N-ATNRVLSLQEEIAKLRK 998 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHH
Confidence 34444454454444444444333333322 233344444444444444322221 1 13445555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (455)
Q Consensus 124 qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~ 179 (455)
+++++.++.+.+++....+.. +++.+++.+++....|+..+++++..+.+.++
T Consensus 999 ~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 999 ELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665554443332 33344555555555555555555544444443
No 27
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.38 E-value=0.045 Score=49.98 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 52 ~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
.++..|+.++.+++..++.=.+.-..+.+...+....++.+...+..|
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rEL 53 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNREL 53 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333333344444444444433333
No 28
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.32 E-value=0.03 Score=48.90 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 79 EKAIQDKSERIVSLQK 94 (455)
Q Consensus 79 e~~I~e~e~~I~eLq~ 94 (455)
+.....+..+..+|+.
T Consensus 40 e~~~~~l~~Ek~~L~~ 55 (129)
T 2fxo_A 40 EEKMVSLLQEKNDLQL 55 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 29
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.29 E-value=0.064 Score=48.94 Aligned_cols=122 Identities=14% Similarity=0.194 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHHHHH-------HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRS-------LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA 114 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~-------Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~A 114 (455)
.+..+|++++.++.. +.....++...+...+....++...+..+...-..|+.++..||.....- .......
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE-r~~r~q~ 88 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE-RRDRGHD 88 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 466777777666643 23333344444444444444444444444444455555555555433221 1233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (455)
Q Consensus 115 e~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLe 164 (455)
.+.+.+++.+|..|..+++...........+...+-.++..+++....++
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666777777777766666666666666665555555555555554444
No 30
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.28 E-value=0.12 Score=48.19 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e 79 (455)
.++.--+....+...+..+++.++++..+.-++++
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE 44 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEGSRELE 44 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333333
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.25 E-value=0.0057 Score=64.91 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 158 AKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (455)
Q Consensus 158 skveeLek~~eEqekkI~elE~~Lq~lEeeL~ka 191 (455)
.+++.++...++.++++.++.++.+.+..++..+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.20 E-value=0.019 Score=48.27 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
++.++.++..|..+.+......+.....++..+..-.+.+.+|.+|+.+|..+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l 56 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56677777777777777666666666666666655555555555555544433
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.19 E-value=0.02 Score=72.12 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 59 ski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~ 97 (455)
+++.+...++++...++..++..+.+++.+-.++-.+|.
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~ 1965 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMV 1965 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666566555555555555544443
No 34
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.08 E-value=0.049 Score=68.82 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 126 e~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lE 185 (455)
..++++++..+.++.+.++++.+++.+++.++.+.+....+.+.++.+++..+.+++.++
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444444444444444444443333
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.01 E-value=0.092 Score=45.75 Aligned_cols=9 Identities=11% Similarity=0.350 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 012833 75 VAQKEKAIQ 83 (455)
Q Consensus 75 Ik~~e~~I~ 83 (455)
+..+...+.
T Consensus 22 l~~lke~l~ 30 (129)
T 2fxo_A 22 FTRLKEALE 30 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 36
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=97.01 E-value=0.029 Score=46.91 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
++.++.++..|..+.+......+.....++..+..-.+.+..|.+|+.+|..+
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l 56 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677777777777777766666666666666666555555555555555444
No 37
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=96.16 E-value=0.61 Score=40.88 Aligned_cols=128 Identities=9% Similarity=0.207 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHH
Q 012833 74 VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE--ALE-ARAIEAE 150 (455)
Q Consensus 74 eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e--eLE-ae~~elE 150 (455)
++.+....+.-.-+-+.+-+.+++.+|+.+... +.++..+.++.+-+....+.....+.....+.. .+. -++.++|
T Consensus 26 eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~H-QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELE 104 (167)
T 4gkw_A 26 QLEENQEELEIVGNMLREEQGKVDQLQKRNVAH-QKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELE 104 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHH
Confidence 333344444444556667777888887665543 445555555555544444444433333222211 121 2256667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 012833 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (455)
Q Consensus 151 kkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei 202 (455)
.-+.+-.+-++.|...+.-+.+.+..-.-+.+..-.-..+++-|.......+
T Consensus 105 ADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl 156 (167)
T 4gkw_A 105 ADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKI 156 (167)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 7777777777777777777777666655555555555555655555443333
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.01 E-value=0.11 Score=45.07 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 012833 85 KSERIVSLQKELSS 98 (455)
Q Consensus 85 ~e~~I~eLq~eI~s 98 (455)
....|+.|+.+|++
T Consensus 41 lrr~iq~L~~el~~ 54 (129)
T 3tnu_B 41 MNRMIQRLRAEIDN 54 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 39
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.91 E-value=0.27 Score=40.98 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe 122 (455)
+..+++.++.+|.+++++....+.++..+..++..-...-...+.....++.+|++|.. .-.+.||+=+...+
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa-------sLFeEAN~MVa~ar 75 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA-------SLFDEANNMVADAR 75 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 44567777888888877777777766666666666666666666666666666665542 22334444444444
Q ss_pred HHHHHHHHHHHHHH
Q 012833 123 KQIDNLKKESEKQQ 136 (455)
Q Consensus 123 ~qIe~LkkeLE~~~ 136 (455)
.+-..++...+.+.
T Consensus 76 ~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 76 KEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444433333
No 40
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.90 E-value=0.11 Score=45.27 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sL 99 (455)
....|.+....|+.|+.+|+++
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333
No 41
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.81 E-value=0.19 Score=43.59 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKI 153 (455)
Q Consensus 109 eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl 153 (455)
+.+..++.++.+++..|++|+.+++.+......|+..+.+++...
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445567778888889999999999888888888888888777643
No 42
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.63 E-value=0.18 Score=43.92 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (455)
Q Consensus 108 ~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkk 152 (455)
.+.+..++.+|.+++..|++|+.+++.+......|+..+.+++..
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345566778888888999999988888888888888888877764
No 43
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=95.50 E-value=0.38 Score=50.79 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=31.6
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARAD-ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (455)
Q Consensus 114 Ae~~i~-eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Eleskve 161 (455)
...++. +|+.+|+.|+.+++.+-..+..|+..+.++..+++.|+..|+
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455 777777777777777777777666666666666666666554
No 44
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.50 E-value=1.3 Score=39.76 Aligned_cols=30 Identities=3% Similarity=0.004 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 167 NDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 167 ~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
....+.+.+.++.++...+..+..++.++.
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=95.38 E-value=0.32 Score=49.50 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (455)
Q Consensus 119 ~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Elesk 159 (455)
.+|+.+|.-|+..++.+-..+..|+.-+.++..+++.++..
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444444444444333333333333333
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.11 E-value=0.58 Score=41.32 Aligned_cols=41 Identities=29% Similarity=0.217 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elE 150 (455)
+..++..++..|+.+++.+.+++.+++.++..+.-+..+++
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555444444444444443333333333
No 47
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=95.05 E-value=0.38 Score=38.51 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 157 eskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq 192 (455)
+......+..+..++.+++.++..+..+++.+..+.
T Consensus 33 e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 33 EERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444443333333
No 48
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.91 E-value=0.4 Score=38.36 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~e 176 (455)
.+..+.+......+..+.++...+.+...++..+..++.++..++..++..+..+..
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344344444444444443333333333333
No 49
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.80 E-value=0.36 Score=43.12 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=14.9
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 62 ~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~ 97 (455)
.+.++..++-+...+.+++.-..-+..|..|..++.
T Consensus 27 eeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLk 62 (147)
T 2b9c_A 27 EEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLK 62 (147)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 333333333333344444444444444444444443
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.79 E-value=0.27 Score=51.89 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~L 181 (455)
+|+.+...|+.+++..-+.+..|+..+++|-.+|+.||-+|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555555555555555555555544
No 51
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=94.64 E-value=0.38 Score=40.83 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Elesk 159 (455)
+|..|+.|++-.+.+...-....+.+..++.++..++..+...
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 4555566666666665555555555555555555544444433
No 52
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=94.63 E-value=0.71 Score=38.54 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sL 99 (455)
+...+.....+|..+...+..+
T Consensus 22 L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 22 ITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444
No 53
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.62 E-value=1.3 Score=39.56 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 012833 117 RADELEKQID 126 (455)
Q Consensus 117 ~i~eLe~qIe 126 (455)
++..|+.++.
T Consensus 53 r~~~lE~qLk 62 (147)
T 2b9c_A 53 KMEIQEIQLK 62 (147)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 54
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=94.48 E-value=1.8 Score=35.96 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~Lk 129 (455)
+..+|..+-+.+-.++.++...+.-|-.++..|..+.+-|..-+.-|+.. ++...+.+++++....||.+.-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaan--------Tr~lQqh~aRlnsqQrQI~ENh 75 (114)
T 2xzr_A 4 IEDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAAN--------TRTLQQHSARLDSQQRQINENH 75 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHh--------HHHHHHHHHHHHhHHHHHHHHH
Confidence 33444555555555555555555555555555555555554444444322 3344445555555555555544
Q ss_pred HHHHHHHHHHHHHHH
Q 012833 130 KESEKQQKEKEALEA 144 (455)
Q Consensus 130 keLE~~~~e~eeLEa 144 (455)
++......+.++|-+
T Consensus 76 kEMKq~aaqsaaLls 90 (114)
T 2xzr_A 76 KEMKQIEDKIEEILS 90 (114)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444333333333
No 55
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.45 E-value=2.6 Score=37.82 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 164 QKINDEQKSKIRKTERALKVAEEEMMRA 191 (455)
Q Consensus 164 ek~~eEqekkI~elE~~Lq~lEeeL~ka 191 (455)
+..++.++.++.+.+..+..++.++..+
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 56
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=94.25 E-value=1.8 Score=44.04 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~ 146 (455)
+..++.+|..-=..|..|+..|+++..++..||...
T Consensus 122 i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 122 IEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332344444555555544444444444
No 57
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.14 E-value=0.13 Score=40.68 Aligned_cols=47 Identities=32% Similarity=0.519 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 54 I~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
|.+|+.-+.....+|..+++-|.+++..|.+++..|.+|+++++.++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666666666677777777777777777777777777776554
No 58
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.10 E-value=0.22 Score=43.96 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~ 97 (455)
+..+|..++..|.....++++++. ...+++.+...+.....++..|..++.
T Consensus 6 LEd~L~~~r~~l~~~~~~~~~le~----l~~~l~~l~~~l~~~~~e~~~L~~~l~ 56 (135)
T 2e7s_A 6 LEEQLNKSLKTIASQKAAIENYNQ----LKEDYNTLKRELSDRDDEVKRLREDIA 56 (135)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTTHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555555554443 222333344444444444444444443
No 59
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=93.73 E-value=3.5 Score=36.58 Aligned_cols=16 Identities=13% Similarity=0.426 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKT 65 (455)
Q Consensus 50 lr~kI~~Leski~ele 65 (455)
++.+-..|.+...++.
T Consensus 27 l~~eN~~Lk~e~e~l~ 42 (155)
T 2oto_A 27 LRHENKDLKARLENAM 42 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.47 E-value=1.6 Score=45.10 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 152 kl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a 199 (455)
..+....+++.+.++.+.++..++++..++..+.+.+..+..+...++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 333334444444445555555555555555555555554444444333
No 61
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.39 E-value=3 Score=34.70 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (455)
Q Consensus 121 Le~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Ele 157 (455)
.+.++..|..++..-.......+..+..++.+++++.
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.37 E-value=3.8 Score=42.18 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~ 97 (455)
++..+.+......+...++.
T Consensus 372 le~~~~~~~~~~~~~~~~~~ 391 (487)
T 3oja_A 372 LDEQVSNGRRAHAELDGTLQ 391 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHH
Confidence 33333333333333333333
No 63
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=93.36 E-value=1.3 Score=37.00 Aligned_cols=41 Identities=10% Similarity=0.209 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ 83 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~ 83 (455)
+.+++.++-.++..++.++..+..++..++.++...+..+.
T Consensus 4 ~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~ 44 (117)
T 2zqm_A 4 IPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALD 44 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777777777666666665555544444333
No 64
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=93.30 E-value=1.4 Score=46.33 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012833 166 INDEQKSKIRKTERALK 182 (455)
Q Consensus 166 ~~eEqekkI~elE~~Lq 182 (455)
.++.+..+|+.++..+.
T Consensus 176 ~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 176 VIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 65
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.20 E-value=2.6 Score=36.00 Aligned_cols=62 Identities=13% Similarity=0.197 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (455)
Q Consensus 122 e~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~ 183 (455)
..+++.++..+++.+..-+.--.....+|..+..+.+.+++..-...+++.+++.+.++|.-
T Consensus 40 ~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 40 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333332223334444444444555544444444555555555544433
No 66
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.84 E-value=1.5 Score=39.21 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=23.0
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 60 ki~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
.|..+++++..+...|.+++..+.++++.++.+++++.+|+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555566666666666666666666665
No 67
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=92.83 E-value=2.2 Score=35.46 Aligned_cols=6 Identities=33% Similarity=0.700 Sum_probs=2.1
Q ss_pred HHHHHH
Q 012833 123 KQIDNL 128 (455)
Q Consensus 123 ~qIe~L 128 (455)
.++..+
T Consensus 31 ~~i~~l 36 (112)
T 1l8d_A 31 NKIGDL 36 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 68
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.77 E-value=4.1 Score=34.65 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek 165 (455)
.++.|+.++..|....+.+...+..+|..-.++|..---...-+++++.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~ 84 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQ 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHH
Confidence 4444444444444444444444444444444444433333333333333
No 69
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=92.71 E-value=3.7 Score=33.91 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 169 EQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 169 EqekkI~elE~~Lq~lEeeL~ 189 (455)
+.+...+.++.++......+.
T Consensus 71 e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 71 ELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 70
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.61 E-value=1.1 Score=40.23 Aligned_cols=63 Identities=25% Similarity=0.269 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~ 105 (455)
+....++....|..|++.+..++.+|.+++.++..+.+.++....++..|+-++..++.+...
T Consensus 59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~k 121 (152)
T 3a7p_A 59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSD 121 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667778888888888888888888888888888888888888888888777654443
No 71
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=92.52 E-value=1.3 Score=36.35 Aligned_cols=37 Identities=8% Similarity=0.215 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I 82 (455)
++.+.-.++..++.++..+..++..++.++...+..+
T Consensus 2 ~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~ 38 (107)
T 1fxk_A 2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKAL 38 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666555555444444444333
No 72
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.43 E-value=4.6 Score=34.36 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~e 140 (455)
+.+..+..|++++..+.....
T Consensus 32 e~~~~~~~Lq~El~~lr~~~~ 52 (111)
T 2v66_B 32 QSYKQVSVLEDDLSQTRAIKE 52 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 73
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.26 E-value=1.8 Score=35.08 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKG 70 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~ 70 (455)
|.+||.+|..+......+..+++.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn 25 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDN 25 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444444444443333
No 74
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.97 E-value=2.5 Score=34.07 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sL 99 (455)
++..|++.=..|+-|+-+|+.|
T Consensus 11 LE~KIq~avdtI~lLqmEieEL 32 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEEL 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 75
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=91.76 E-value=0.81 Score=36.76 Aligned_cols=55 Identities=31% Similarity=0.355 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI 96 (455)
.+..+++.++.++..++++....+..++.-.++|..+...+..++.+|.-|++++
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4677777777777777777777777777777777777777777777766666655
No 76
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=91.75 E-value=1.3 Score=36.67 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLe 164 (455)
+++..|+.|++-.+.+...-+.+.+.+..++.++...+..+...+..|+
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4666666777777766666666666666666666665555555544443
No 77
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=91.29 E-value=4.8 Score=41.22 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 163 LQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 163 Lek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
|++++...+++|++++.++..++.+++.+..
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444333
No 78
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=91.27 E-value=7.7 Score=40.64 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 012833 173 KIRKTERALKVAE 185 (455)
Q Consensus 173 kI~elE~~Lq~lE 185 (455)
.++.+..+|+.++
T Consensus 176 ~~~~l~~ki~~l~ 188 (464)
T 1m1j_B 176 VIDSLHKKIQKLE 188 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 79
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.25 E-value=2.8 Score=33.96 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~L 181 (455)
.+..+++.++..+++.+..-+.=-.....+|..+..+.+.++.+.-...+++.+++.+.++|
T Consensus 18 ~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 18 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554444444333333333444444444444444444444444444444444443
No 80
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=91.20 E-value=4.1 Score=33.43 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQE 67 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~e 67 (455)
+.+|..|+.+++..-.++..++++
T Consensus 8 Ke~mq~LNdRlAsyIdKVR~LEqq 31 (93)
T 3s4r_A 8 KVELQELNDRFANLIDKVRFLEQQ 31 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677766666665555443
No 81
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=91.12 E-value=0.53 Score=37.14 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=24.1
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 61 i~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
+.+++..+..++++|..++..|+++++.|.+..+.|..|+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666666555555543
No 82
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=90.85 E-value=2.8 Score=33.33 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 121 Le~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
+-.+++.|-.+...+-.-+.+++--..++=.++.++..+.+.++.++...+.-...++.++..+|+++.+
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777777777777777777777777777888888888888888877777777777777777776654
No 83
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=90.84 E-value=2.7 Score=43.40 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 012833 117 RADELEKQIDNL 128 (455)
Q Consensus 117 ~i~eLe~qIe~L 128 (455)
...++..++.++
T Consensus 85 ~skkml~~~~~~ 96 (409)
T 1m1j_C 85 KSKKIIEEIIRY 96 (409)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 84
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.82 E-value=0.69 Score=36.98 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq 192 (455)
.+++++.++|.++.-.+.-+++|+..+.+++..|+.+...+..+.+.+..+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677778888888888888888888888888888888887777766555444
No 85
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=90.77 E-value=6.7 Score=33.01 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 012833 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERI 89 (455)
Q Consensus 59 ski~ele~eI~~k~~eIk~~e~~I~e~e~~I 89 (455)
.+-.+..+++..-...-.+++..+.+++..|
T Consensus 8 RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~ 38 (107)
T 2no2_A 8 RKNAEVTKQVSMARQAQVDLEREKKELEDSL 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333333333333333
No 86
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=90.74 E-value=8.4 Score=34.07 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhhhc
Q 012833 57 LESHIDEKTQELKG 70 (455)
Q Consensus 57 Leski~ele~eI~~ 70 (455)
+..+...+..+.+.
T Consensus 27 l~~eN~~Lk~e~e~ 40 (155)
T 2oto_A 27 LRHENKDLKARLEN 40 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 87
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.57 E-value=7.4 Score=33.16 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESEKQQKEKEALEARAIEA 149 (455)
Q Consensus 121 Le~qIe~LkkeLE~~~~e~eeLEae~~el 149 (455)
+++.+..|++.++...-.+..|+.+...+
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333333333
No 88
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.82 E-value=1.7 Score=37.45 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 80 KAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 80 ~~I~e~e~~I~eLq~eI~sL 99 (455)
..|..+..+|..|..+++.+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 89
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=89.65 E-value=0.6 Score=41.47 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek 165 (455)
+.+.|++.+..+..+++..+..+..+++++..++....+++.....|..
T Consensus 60 ~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeE 108 (146)
T 2xnx_M 60 RANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEE 108 (146)
T ss_dssp THHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445666667777777777766666666666666655555554444433
No 90
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=89.54 E-value=6.2 Score=33.73 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (455)
Q Consensus 108 ~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~e 148 (455)
++-+..++.++..++.+++.+++.++.++.++..+...+.+
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666665555555555555444444433
No 91
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=88.82 E-value=17 Score=37.09 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (455)
Q Consensus 156 leskveeLek~~eEqekkI~elE~~Lq~lEeeL~ka 191 (455)
+++++...++.+++++.+|.+++.+|+.++.++.++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555556666666666666665554
No 92
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=88.74 E-value=12 Score=39.39 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 150 EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (455)
Q Consensus 150 Ekkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ka 191 (455)
+..+...+..++..++...+.+.++...++.+..++.++..+
T Consensus 65 e~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 65 EAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555554444444443
No 93
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=87.90 E-value=0.64 Score=49.97 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 143 Eae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
..+...++.++.+.+..+..+....+.....-.+++.++..+++...+++.++.
T Consensus 404 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 404 AAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555666666666666666666666666666666555555554
No 94
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=87.52 E-value=4.7 Score=34.94 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHH
Q 012833 49 QLKSKIRSLESHIDEKTQELKGKDE 73 (455)
Q Consensus 49 ~lr~kI~~Leski~ele~eI~~k~~ 73 (455)
.+..+++.++.++.++++.+++.+.
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e 34 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDE 34 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3455555555555555555555443
No 95
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=87.10 E-value=4.8 Score=34.89 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012833 177 TERALKVAEEEMMRAKF 193 (455)
Q Consensus 177 lE~~Lq~lEeeL~kaq~ 193 (455)
++..+..-+.++.+.+.
T Consensus 101 le~~la~KkAEleKtqa 117 (125)
T 2pms_C 101 LEKTIAAKKAELEKTEA 117 (125)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334333344444333
No 96
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=86.77 E-value=0.98 Score=48.54 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 012833 90 VSLQKELSSL 99 (455)
Q Consensus 90 ~eLq~eI~sL 99 (455)
.+|+..+..+
T Consensus 338 ~~~~~~~~~~ 347 (575)
T 2i1j_A 338 QEYQDRLRQM 347 (575)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 97
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=86.50 E-value=19 Score=37.51 Aligned_cols=49 Identities=10% Similarity=0.266 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 49 ~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~ 97 (455)
.++..|+.|...+.+..+.-.+....+..+-+.+.+...++.+.++.+.
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~ 110 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYG 110 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 3556666666666666666566555555555555555555555554443
No 98
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=86.48 E-value=4.2 Score=32.79 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (455)
Q Consensus 114 Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Elesk 159 (455)
++..|..++.++..++.+++.+..+-..|=+-+-.++.++..+.+.
T Consensus 33 ~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkL 78 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3334444445555555444444444333333334444444444333
No 99
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=86.44 E-value=21 Score=37.21 Aligned_cols=36 Identities=14% Similarity=0.322 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 147 IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (455)
Q Consensus 147 ~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq 182 (455)
..+..+++.--..+..|+..++.+..+|+.||..|.
T Consensus 121 ~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 121 VTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444455555555555554443
No 100
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=86.11 E-value=12 Score=29.96 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (455)
Q Consensus 112 ~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Elesk 159 (455)
..++..|..++.++..++.+++.+..+-..|=+-+-.++.++..+.+.
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344445555555555555555555444444444444444444444433
No 101
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=86.07 E-value=3.4 Score=32.35 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=28.1
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012833 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (455)
Q Consensus 60 ki~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK 102 (455)
.+..+.+++.+++.+|..++..|.=+++....|.++|-++.-+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIE 61 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIE 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHH
Confidence 4444455555666677777777777777777777777666533
No 102
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=85.34 E-value=13 Score=29.72 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQ 170 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEq 170 (455)
...+.++....+++.|++.-+.++.-...++.....++.+..+++..++.+..+.+++
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555544443
No 103
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=84.94 E-value=15 Score=30.37 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 143 EARAIEAEKKISDLSAKLEKLQKINDEQ 170 (455)
Q Consensus 143 Eae~~elEkkl~EleskveeLek~~eEq 170 (455)
+++++....++.+-.+++..+..+.+++
T Consensus 61 ~aRlnsqQrQI~ENhkEMKq~aaqsaaL 88 (114)
T 2xzr_A 61 SARLDSQQRQINENHKEMKQIEDKIEEI 88 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 104
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=84.27 E-value=24 Score=32.06 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI 96 (455)
..+.++.......-+.+-.+....++||.-+...|+-.+..|.-++.++
T Consensus 20 ~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~ 68 (170)
T 3l4q_C 20 KVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQG 68 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444444444444444444444444
No 105
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=83.67 E-value=16 Score=31.42 Aligned_cols=11 Identities=45% Similarity=0.603 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 012833 89 IVSLQKELSSL 99 (455)
Q Consensus 89 I~eLq~eI~sL 99 (455)
|..|..+|+.+
T Consensus 17 Ie~Lkreie~l 27 (120)
T 3i00_A 17 IERLYREISGL 27 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 106
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=83.21 E-value=7.5 Score=30.40 Aligned_cols=59 Identities=27% Similarity=0.316 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012833 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN 106 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~ 106 (455)
+.++.-+..|++.+.+.+.+|..+.+.++-+.+..+.++.+|=++.-+=.-||.+...+
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 34555667777777777777777777777777777777777777777767776655443
No 107
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=83.16 E-value=18 Score=29.62 Aligned_cols=68 Identities=25% Similarity=0.243 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 123 ~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
+|.+.|+.-+..+..+.+.-+.++.+++.++.+.-..++.-.-..-+++..+...+..-..++-.+..
T Consensus 25 kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE 92 (101)
T 1d7m_A 25 KQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAE 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 44444444444444444444555555555555544444433333334555555555554444433333
No 108
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=83.06 E-value=21 Score=30.37 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~L 181 (455)
.|+.+...++++++....+...++.. +..+.++-..++..|......-+..+.++.+..
T Consensus 10 ~lq~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~f 68 (112)
T 1x79_B 10 KLQLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGL 68 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333333 222233333344444444444444444443333
No 109
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=83.01 E-value=22 Score=36.65 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEK 139 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~ 139 (455)
.+.+.-..+-+++.+++..+..+...+
T Consensus 81 ~~~q~Skkml~~~~~~~~~~~~~~~~i 107 (411)
T 3ghg_C 81 AATLKSRKMLEEIMKYEASILTHDSSI 107 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333333333344444444433333333
No 110
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=82.97 E-value=19 Score=37.10 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 158 AKLEKLQKINDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 158 skveeLek~~eEqekkI~elE~~Lq~lE 185 (455)
..+..|+..+..++.+|+.++..+..++
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 111
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=82.14 E-value=42 Score=33.95 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI 96 (455)
+...|.............-+.+-.+.....++|..+...|+-.+..|.-++.++
T Consensus 124 ~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~ 177 (373)
T 3hhm_B 124 VGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQC 177 (373)
T ss_dssp GGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444455555555555555555555544
No 112
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=82.01 E-value=22 Score=33.29 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR 175 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~ 175 (455)
.-+.+|..++..++.-+.++......+..++.++...|..+..+..++..++..+...+..|.
T Consensus 81 dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Is 143 (242)
T 3c9i_A 81 DHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNIS 143 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchh
Confidence 445555556666666665555555555555555555555555555554444444444333333
No 113
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=82.00 E-value=12 Score=30.87 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=37.3
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKES 132 (455)
Q Consensus 69 ~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeL 132 (455)
+++...|.+++..+.+.+..|..+.-++.++. .......+.++.....++++|+.++
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p-------~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAP-------LTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56667777788888888888887777776653 1223355666666666666665543
No 114
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=81.74 E-value=11 Score=30.37 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 75 VAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~eI~ 97 (455)
+..++..|..++..|..++.++.
T Consensus 24 le~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444445555555443
No 115
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=81.25 E-value=27 Score=30.51 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~l 184 (455)
+|++.+.+-..-+..+..-+--|.++++.-+-+.++.-...+.+
T Consensus 102 ELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~L 145 (167)
T 4gkw_A 102 ELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKL 145 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333333333333333
No 116
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=81.13 E-value=38 Score=33.82 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVA-----------QKEKAIQDKSERIVSLQKELSSLQKKET 104 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk-----------~~e~~I~e~e~~I~eLq~eI~sLQkK~s 104 (455)
.+..-|+.|+..+...+.+.+.+..+|.+....+. .+...+......|..|+.+|+.+++++.
T Consensus 120 ~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 120 TLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 34555566666666666666555555555555442 2223333333345555555555555444
No 117
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=81.01 E-value=58 Score=34.12 Aligned_cols=12 Identities=25% Similarity=0.025 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 012833 410 ASALLVLPVIIL 421 (455)
Q Consensus 410 asal~~~p~~~~ 421 (455)
-|++++.|+-++
T Consensus 566 FS~~lGtPLGIl 577 (602)
T 1cii_A 566 FSILTGSALGII 577 (602)
T ss_dssp HHHHTTCCCHHH
T ss_pred HHHHHhhHHHHH
Confidence 467777775443
No 118
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=80.83 E-value=7.9 Score=28.56 Aligned_cols=6 Identities=17% Similarity=0.207 Sum_probs=2.1
Q ss_pred HHHHHH
Q 012833 118 ADELEK 123 (455)
Q Consensus 118 i~eLe~ 123 (455)
...++.
T Consensus 41 A~RAN~ 46 (52)
T 1jcd_A 41 AARANQ 46 (52)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 119
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=80.77 E-value=5.9 Score=31.70 Aligned_cols=46 Identities=28% Similarity=0.368 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 151 kkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
...+++..+++.++....+++.++..++..++....+-.+++.|..
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555555544444444444444
No 120
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=80.76 E-value=14 Score=30.52 Aligned_cols=11 Identities=55% Similarity=0.782 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 012833 123 KQIDNLKKESE 133 (455)
Q Consensus 123 ~qIe~LkkeLE 133 (455)
.+|+.|+.++.
T Consensus 23 ~~id~lke~~~ 33 (94)
T 3jsv_C 23 ELIDKLKEEAE 33 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 121
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=80.44 E-value=2.5 Score=40.42 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~ 97 (455)
+.+++.++.++..|++++..+++..+.....+..|..++..+.+|.+.+.
T Consensus 2 e~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iR 51 (233)
T 2yko_A 2 ASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVK 51 (233)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777788888888777777777777777777777777777777663
No 122
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=79.87 E-value=13 Score=28.81 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 108 AEQVDKAHARADELEKQIDNLKKESEKQQ 136 (455)
Q Consensus 108 ~eei~~Ae~~i~eLe~qIe~LkkeLE~~~ 136 (455)
.+.+..++.+|.+++.+|+.|+-+++.++
T Consensus 48 ~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 48 NDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455667778888888888887777654
No 123
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=79.76 E-value=9.5 Score=28.12 Aligned_cols=7 Identities=14% Similarity=0.539 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 012833 51 KSKIRSL 57 (455)
Q Consensus 51 r~kI~~L 57 (455)
...+...
T Consensus 11 ~~~~~~~ 17 (60)
T 3htk_A 11 ENQVEEL 17 (60)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 124
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=79.57 E-value=15 Score=37.74 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s 104 (455)
++...+.+...+.....+++ -+++-+++..-++...++.+|+.+...+.+++.
T Consensus 7 ~r~~~~~~~~~~~~r~~~~~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 7 LRQEPEVFHRAIREKGVALD--LEALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHCHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhCHHHHHHHHHHhCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333322 355666666666666777777776666665554
No 125
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=79.57 E-value=61 Score=34.10 Aligned_cols=68 Identities=22% Similarity=0.183 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 128 LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
++.+...++.+.+++..+-... ....+++++.-++.++..++.+.+.+.++..++.++.+.+.++.+.
T Consensus 39 ~~a~n~~i~aeNeaikkrNa~a---ka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 39 NNAANAALTAENTAIKKRNADA---KADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444443333 3455667778888888888888888888888888887777666643
No 126
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=79.09 E-value=9.1 Score=31.52 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 012833 121 LEKQIDNLKKE 131 (455)
Q Consensus 121 Le~qIe~Lkke 131 (455)
++.++..++.+
T Consensus 49 lE~eL~~~r~e 59 (95)
T 3mov_A 49 KEREMAEIRDQ 59 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 127
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=78.80 E-value=25 Score=28.69 Aligned_cols=24 Identities=38% Similarity=0.349 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQ 164 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLe 164 (455)
.+|+++...|+-..=++-++.+..
T Consensus 71 dLE~RLsKtEKDkAiLELkLaE~~ 94 (101)
T 1d7m_A 71 ELEARLAKTEKDRAILELKLAEAI 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhh
Confidence 444444444444444444444333
No 128
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.78 E-value=30 Score=29.55 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 168 DEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 168 eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
.+++.+|..+.+.|++...+++++..+..
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 33333344444444444444444444433
No 129
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=78.53 E-value=25 Score=29.04 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 150 EKKISDLSAKLEKLQKINDEQKSKIRKT 177 (455)
Q Consensus 150 Ekkl~EleskveeLek~~eEqekkI~el 177 (455)
+.++.+...+++.|+..+-.++.-+.++
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 130
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=78.51 E-value=11 Score=31.44 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKESEKQQKEKEALEAR 145 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeLE~~~~e~eeLEae 145 (455)
++..+..+|+.|+.+.+.+..+++.||.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 131
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=78.38 E-value=65 Score=33.15 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~q 124 (455)
.-+.-+...-..|.+-+.++...++..+.-.......+.+++..+..+.+.+..+-+.... ..+...+-..+++.
T Consensus 235 elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~--~~e~l~i~~~i~e~--- 309 (413)
T 4hpq_C 235 NLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRK--HEEYISVFEGISAL--- 309 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---
T ss_pred HHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHH---
Confidence 3344455555556666666655555555555555555555555555555544443322110 01111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 012833 125 IDNLKKESEKQQKEKEALEARAIEAEKKI---SDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKE 201 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEae~~elEkkl---~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~e 201 (455)
+...++.+.....+++... .....-...+-.++...+.-...++.-+..+.+++.++.++-...+..
T Consensus 310 ----------l~~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e~d~~~Re~ 379 (413)
T 4hpq_C 310 ----------IQKFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLEQINTADLRERQM 379 (413)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333333333333322 222222333334444444455556666666677777776666655555
Q ss_pred hhhhccccCCh
Q 012833 202 LTEVHSAWLPP 212 (455)
Q Consensus 202 i~~~gGawl~P 212 (455)
-...+|.|||.
T Consensus 380 F~~~~G~yLP~ 390 (413)
T 4hpq_C 380 FLLENGNYLPE 390 (413)
T ss_dssp HHHHSSSSSCG
T ss_pred HHHHhcccCCh
Confidence 56678999987
No 132
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=78.26 E-value=4 Score=40.84 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 53 kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
+...+.++|..++..|...+.+|..++..+...+..|.+|+++|..+
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 133
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=77.48 E-value=6.3 Score=31.32 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (455)
Q Consensus 149 lEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ka 191 (455)
++.++.+++.++.-++..++++...+.++...|..++.++..+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333333
No 134
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=77.30 E-value=31 Score=35.53 Aligned_cols=8 Identities=25% Similarity=0.248 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 012833 173 KIRKTERA 180 (455)
Q Consensus 173 kI~elE~~ 180 (455)
+|.+|+..
T Consensus 120 ~i~~L~~~ 127 (411)
T 3ghg_C 120 KIVNLKEK 127 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 135
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=75.42 E-value=17 Score=30.06 Aligned_cols=83 Identities=14% Similarity=0.253 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~ 123 (455)
..+...+...|...-..+..+ .-+++...|.+++..+.+.+..|..|.-++.++.. ......+.++.....
T Consensus 11 E~df~~l~~~i~~kl~~i~~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~-------~~R~~~~~klr~Yk~ 81 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPP-------QSRGMYSNRMRSYKQ 81 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-------TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HhHHHHHHHHHHHHH
Confidence 344444444444443333322 33677888999999999999999998888876631 223356667777777
Q ss_pred HHHHHHHHHHHH
Q 012833 124 QIDNLKKESEKQ 135 (455)
Q Consensus 124 qIe~LkkeLE~~ 135 (455)
++++|+.++...
T Consensus 82 dL~~lk~elk~~ 93 (102)
T 1vcs_A 82 EMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776665543
No 136
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=75.15 E-value=38 Score=35.70 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012833 47 LDQLKSKIRSLESHIDEKTQELK-GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~-~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK 102 (455)
+.-++...+.+...+.....+.. +.-+++-+++..-++...++.+|+.+...+.+.
T Consensus 43 ~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~ 99 (501)
T 1wle_A 43 MESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEA 99 (501)
T ss_dssp HHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444332210 112345555555555555555555555555443
No 137
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=74.38 E-value=34 Score=27.86 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 152 KISDLSAKLEKLQKINDEQKSKIRK 176 (455)
Q Consensus 152 kl~EleskveeLek~~eEqekkI~e 176 (455)
.+.++...++.+......+..+++.
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444433333333333333
No 138
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=74.12 E-value=41 Score=28.73 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 115 HARADELEKQIDNLKKESE 133 (455)
Q Consensus 115 e~~i~eLe~qIe~LkkeLE 133 (455)
+.+..--|.-+..|..-|+
T Consensus 45 eaQAaTCNqTV~tL~~SL~ 63 (121)
T 3mq7_A 45 EAQAATANHTVMALMASLD 63 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444433333
No 139
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=73.84 E-value=30 Score=33.06 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 127 ~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq 192 (455)
.|+++.+.+..+++-++-++.-+..++.++..+++.|+....-.-.++..+++.--.++.++...+
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~ 218 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQID 218 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444444444444444555555544444444444444444444444443333
No 140
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=73.64 E-value=4.2 Score=31.61 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=23.3
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 63 ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
++...|..++.-|.+++..++++..+|++|+++|.-.+
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666667777777777777666554
No 141
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=73.48 E-value=33 Score=27.43 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 130 KESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (455)
Q Consensus 130 keLE~~~~e~eeLEae~~elEkkl~Eleskv 160 (455)
.++..++....+++++...-|+++......+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El 56 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEV 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3333444444444444444444444333333
No 142
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=73.46 E-value=6.2 Score=32.47 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 120 ELEKQIDNLKKESEKQQKEKEALEARAI-EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~eeLEae~~-elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
.+++-++.++.+.+.+..+......... +.|.++..--++++.+...+-+++..-.. -.+.+|++|.+++.++...
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~k---mKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRK---MKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHc
Confidence 3444455556666666555555554443 66666544444444444444444333333 3456788888888887644
No 143
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=72.64 E-value=62 Score=30.20 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQQKEKEALE 143 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~eeLE 143 (455)
.++..+.++..+++.....+.+.|
T Consensus 150 ~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 150 RLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 144
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=72.35 E-value=42 Score=28.07 Aligned_cols=12 Identities=8% Similarity=0.083 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 012833 74 VVAQKEKAIQDK 85 (455)
Q Consensus 74 eIk~~e~~I~e~ 85 (455)
++++++..+.+.
T Consensus 30 ~k~eL~~~~~~~ 41 (107)
T 2no2_A 30 EKKELEDSLERI 41 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333344333
No 145
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=71.45 E-value=15 Score=25.85 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQK 171 (455)
Q Consensus 140 eeLEae~~elEkkl~EleskveeLek~~eEqe 171 (455)
..||++..+++.+..+++.++..|+.+...+.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555555555555555555555555544443
No 146
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=71.02 E-value=7.7 Score=39.71 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
+|++++.++..+++++.+++.+|++...++.+++..+.+.+..-..|.++|..+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555555555555555555555555555555555555555555555555444
No 147
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=70.89 E-value=50 Score=34.50 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 159 KLEKLQKINDEQKSKIRKTERA 180 (455)
Q Consensus 159 kveeLek~~eEqekkI~elE~~ 180 (455)
.+..|+..++.+..+|+.++..
T Consensus 164 ~i~~l~~~~~~~~~~i~~l~~~ 185 (461)
T 3ghg_B 164 NLRVLRSILENLRSKIQKLESD 185 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444333
No 148
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=70.81 E-value=36 Score=35.51 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 152 KISDLSAKLEKLQKINDEQKSKIRKTE 178 (455)
Q Consensus 152 kl~EleskveeLek~~eEqekkI~elE 178 (455)
.+..+..-++.+..++..++..+..++
T Consensus 164 ~i~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 164 NLRVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333444444444444444444433
No 149
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=70.78 E-value=48 Score=28.10 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (455)
Q Consensus 118 i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eE 169 (455)
+...+.-+..|...++.+...+..++.+.......+.+...+...++.-.+.
T Consensus 69 l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er 120 (150)
T 3ajw_A 69 WINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDR 120 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555555544443
No 150
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=70.73 E-value=45 Score=31.89 Aligned_cols=75 Identities=17% Similarity=0.094 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 119 ~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
..|..+.+.+-.+++.+.-++.-..++..++..+++.+......+-+.+..+++.--.|+..|...+..+.-+++
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666666666666666666666666666666666666666666555443
No 151
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=70.10 E-value=8.9 Score=27.03 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 75 VAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
|..++.+|...+++|.+++.++..|+
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555553
No 152
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=69.80 E-value=1.1e+02 Score=31.98 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 012833 408 LQASALLVLPVIILFRIGSAIF 429 (455)
Q Consensus 408 ~~asal~~~p~~~~~~~~~~~~ 429 (455)
++++.+-++-+.+++-++++.+
T Consensus 569 ~lGtPLGIlGiALImAvVgSlI 590 (602)
T 1cii_A 569 LTGSALGIIGYGLLMAVTGALI 590 (602)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHh
Confidence 3344444444444455555554
No 153
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=68.83 E-value=31 Score=31.79 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 119 DELEKQIDNLKKESEKQQKEK 139 (455)
Q Consensus 119 ~eLe~qIe~LkkeLE~~~~e~ 139 (455)
......|..|..++..+..++
T Consensus 16 ~~ad~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 16 DSADLLVANLVNENFVLSEKL 36 (190)
T ss_dssp ----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444443333333333
No 154
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.53 E-value=25 Score=29.23 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEK 139 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~ 139 (455)
+++.+..+|..|+.+.++|.++++.++-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 155
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=68.18 E-value=14 Score=32.26 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
-+..++.++..++.+++.+++.+..++..+.
T Consensus 99 A~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~ 129 (151)
T 2zdi_C 99 AISFLEKRLKEYDEAIKKTQGALAELEKRIG 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333
No 156
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=67.43 E-value=4.4 Score=25.43 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=16.8
Q ss_pred hhcchHHHHHHHHHHHHHHHH
Q 012833 346 ALKPYTKKVVRAYGKFLKSAT 366 (455)
Q Consensus 346 ~~~P~~~~v~~~~~~~~~~a~ 366 (455)
.+.||+++++.++..++++..
T Consensus 2 ~~~P~~e~ik~q~~~i~e~i~ 22 (26)
T 1oef_A 2 WFEPLVEDMQRQWAGLVEKVQ 22 (26)
T ss_dssp CCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 367999999999988887654
No 157
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=67.22 E-value=28 Score=36.11 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 75 VAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~eI~ 97 (455)
|-+++..-++...++.+|+.+..
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n 55 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERN 55 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 158
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=67.17 E-value=1.2e+02 Score=31.29 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Q 012833 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE------RIVSLQKELSSLQK 101 (455)
Q Consensus 52 ~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~------~I~eLq~eI~sLQk 101 (455)
.++.++..+.+.+..+..+...++...+.++.+... +..+|..++..|.+
T Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~ 241 (517)
T 4ad8_A 186 AAWREAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSN 241 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 334444444444444444444455555555555554 55555555555543
No 159
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=66.07 E-value=32 Score=31.78 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDE 63 (455)
Q Consensus 47 L~~lr~kI~~Leski~e 63 (455)
+++...-|..|..+...
T Consensus 15 l~~ad~LV~~L~~En~~ 31 (190)
T 4emc_A 15 IDSADLLVANLVNENFV 31 (190)
T ss_dssp -----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 160
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=65.95 E-value=1e+02 Score=31.17 Aligned_cols=39 Identities=8% Similarity=0.197 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (455)
Q Consensus 157 eskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~ 195 (455)
++.++++......++..++........++.+++.++-++
T Consensus 211 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 211 KSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 333333333333333333333333333444444444333
No 161
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=64.73 E-value=74 Score=27.97 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 75 VAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
|.++...|......|.+|...|..|
T Consensus 42 i~en~~~iakNqadI~~L~~dI~dL 66 (157)
T 2qih_A 42 ANENKDGIAKNQADIQLHDKKITNL 66 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 162
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=64.50 E-value=51 Score=26.08 Aligned_cols=57 Identities=23% Similarity=0.172 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 131 ESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (455)
Q Consensus 131 eLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEee 187 (455)
+++.+-.+..+|-.-++.+.--.+++=+++++|..+.+-++..+..........+..
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~r 66 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444444444443333333333333333333
No 163
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=63.49 E-value=33 Score=25.07 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (455)
Q Consensus 112 ~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Ele 157 (455)
+++-.++..|..+-.-|++++++....+..||.+...+..-+..++
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 3444566666666667777777777777777777666655444443
No 164
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=63.43 E-value=24 Score=30.78 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (455)
Q Consensus 114 Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Eles 158 (455)
..+-+..++..++.++..++.+..++..+.++...++..+.++.+
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777777777666666666665555543
No 165
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=63.36 E-value=55 Score=26.05 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEA 141 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~ee 141 (455)
++..++.+...|+.+|..++.+++.-+.+...
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~ 45 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERER 45 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666777777777776666544443
No 166
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=62.77 E-value=56 Score=34.40 Aligned_cols=30 Identities=10% Similarity=0.085 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 170 QKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 170 qekkI~elE~~Lq~lEeeL~kaq~E~~~~a 199 (455)
+..+..++.++++.++.++..++.+.....
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 167
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=62.74 E-value=29 Score=36.49 Aligned_cols=6 Identities=0% Similarity=-0.191 Sum_probs=3.2
Q ss_pred cchhhh
Q 012833 393 ELEWFA 398 (455)
Q Consensus 393 el~w~~ 398 (455)
+++|.+
T Consensus 396 ~~vhtl 401 (485)
T 3qne_A 396 KYVHCL 401 (485)
T ss_dssp CBCEEE
T ss_pred eeeEEE
Confidence 456554
No 168
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=62.40 E-value=84 Score=27.82 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 101 KKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (455)
Q Consensus 101 kK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~el 177 (455)
.+....-++-...+++=++.|+.++..-+.-+..+..-...++..+.+.+..++++..+.+.+.....+++..++.+
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 169
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=62.31 E-value=1.6e+02 Score=31.05 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~ 97 (455)
...++.+.++.++..++.+.
T Consensus 326 a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 326 ARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333
No 170
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=62.24 E-value=15 Score=36.65 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 73 EVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
++|.+++..|...+..|..|+..|.++
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~ 38 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVN 38 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 171
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=61.10 E-value=65 Score=26.14 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=35.3
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 012833 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN-LKKESEKQ 135 (455)
Q Consensus 69 ~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~-LkkeLE~~ 135 (455)
+++...|.+++..+.+....|..|.-++.++.. -.......+.++.....+++. ++.++..+
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~-----p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIG-----DASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777777777777777777777766510 011223455555555555555 55554443
No 172
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=60.87 E-value=71 Score=26.46 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 143 Eae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+.+...+|+.+.++..-..++...+.+|...++..+...+.+.........++.
T Consensus 20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~ 73 (109)
T 3hd7_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 73 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666677777777777777777777777666666665554
No 173
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=60.72 E-value=39 Score=23.53 Aligned_cols=20 Identities=45% Similarity=0.554 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKL 160 (455)
Q Consensus 141 eLEae~~elEkkl~Eleskv 160 (455)
.+|++++.+|+++..+.+++
T Consensus 24 aleselqalekklaalkskl 43 (48)
T 1g6u_A 24 ALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 174
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=59.33 E-value=15 Score=35.03 Aligned_cols=9 Identities=22% Similarity=0.039 Sum_probs=3.5
Q ss_pred hhHHHHhhh
Q 012833 316 PYFQEAKKF 324 (455)
Q Consensus 316 Py~~e~k~~ 324 (455)
|-.++.++|
T Consensus 195 ~dkqkl~ef 203 (233)
T 2yko_A 195 IDKQMLRDF 203 (233)
T ss_dssp SSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 333444443
No 175
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.32 E-value=27 Score=35.66 Aligned_cols=13 Identities=15% Similarity=-0.087 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 012833 417 PVIILFRIGSAIF 429 (455)
Q Consensus 417 p~~~~~~~~~~~~ 429 (455)
-+..+-.+++++-
T Consensus 326 SL~aLg~vI~aL~ 338 (403)
T 4etp_A 326 SLSALGDVIHALG 338 (403)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 3344444555543
No 176
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=59.20 E-value=85 Score=26.86 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=13.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDE 63 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~e 63 (455)
....++++|.+++..|..+-++
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~q 27 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEA 27 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666554443
No 177
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=58.61 E-value=14 Score=26.07 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEK 64 (455)
Q Consensus 46 eL~~lr~kI~~Leski~el 64 (455)
.|+.+..+|+..+++|+++
T Consensus 10 kI~kVdrEI~Kte~kI~~l 28 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKL 28 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 178
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=58.59 E-value=36 Score=26.43 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 145 RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (455)
Q Consensus 145 e~~elEkkl~EleskveeLek~~eEqekkI~el 177 (455)
...+||.++.+++...+.+..++..+..++..+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333333333333333333333
No 179
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=58.54 E-value=7.9 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=14.2
Q ss_pred cchhHHHhhhhHHHHHHHHhhh
Q 012833 281 VEPHVQTLKTKTIEACEATKTA 302 (455)
Q Consensus 281 ~~p~ve~~k~k~~p~~e~~k~~ 302 (455)
+.|++|.+|.++..++++++..
T Consensus 3 ~~P~~e~ik~q~~~i~e~i~~a 24 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLVEKVQAA 24 (26)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHhh
Confidence 4666677777777776665543
No 180
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=58.51 E-value=64 Score=25.23 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLe 164 (455)
++..++.+...|+.+|..++.+++.-+.+...+.. ++..-.+.+..++.+|.
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~---Elk~~~e~Ld~KI~eL~ 59 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRS---NLKTLLEILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHH
Confidence 33445556666677777777666666544443332 33333334444444443
No 181
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=58.48 E-value=28 Score=28.46 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 73 EVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
...++++..+++.+..|.+|..-|.-.+
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e 63 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMK 63 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777766654
No 182
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=58.40 E-value=67 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 148 EAEKKISDLSAKLEKLQKINDEQKS 172 (455)
Q Consensus 148 elEkkl~EleskveeLek~~eEqek 172 (455)
.+..++.+++..-+.|.....+...
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~~~R~~ 106 (119)
T 3uun_A 82 EVQEQMNLLNSRWECLRVASMEKQS 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 183
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=57.76 E-value=73 Score=26.18 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 115 HARADELEKQIDNLKKESEKQQKEKEALE 143 (455)
Q Consensus 115 e~~i~eLe~qIe~LkkeLE~~~~e~eeLE 143 (455)
+.++.+....|+.|+.++-....-+.+++
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555544444443
No 184
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=57.66 E-value=37 Score=24.80 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 012833 91 SLQKELSSL 99 (455)
Q Consensus 91 eLq~eI~sL 99 (455)
+++.++..|
T Consensus 13 ~l~~~l~~L 21 (51)
T 3m91_A 13 QLEARIDSL 21 (51)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 185
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=57.46 E-value=1.1e+02 Score=27.64 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (455)
Q Consensus 108 ~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeL 163 (455)
...+...+.=|.-++.+...++..+++.....+.....+......+.......+.+
T Consensus 70 ~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 70 SDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666667777777777777766666655555555555555555555555554
No 186
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=57.03 E-value=48 Score=23.30 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 146 AIEAEKKISDLSAKLEKLQKINDEQKS 172 (455)
Q Consensus 146 ~~elEkkl~EleskveeLek~~eEqek 172 (455)
..++|.+..+++.+..+|+..+..++.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 187
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.85 E-value=88 Score=26.30 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 75 VAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
+.++...+++....+..++..+..+.
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~ 28 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVR 28 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 188
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=56.42 E-value=16 Score=31.30 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKT 65 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele 65 (455)
++.||..|+.+++.++.+.....
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~ 30 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLS 30 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555443
No 189
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=56.27 E-value=53 Score=32.77 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=7.0
Q ss_pred HHHHHHhhhcccch
Q 012833 270 VKEQWVVFTTNVEP 283 (455)
Q Consensus 270 ~~~~w~~~~~~~~p 283 (455)
+.+.|+.+++.++-
T Consensus 316 a~~~W~~l~~~a~~ 329 (346)
T 2nrj_A 316 AKDSWKTLRTDAVT 329 (346)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 34556555554443
No 190
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=56.23 E-value=70 Score=29.10 Aligned_cols=13 Identities=8% Similarity=0.595 Sum_probs=5.4
Q ss_pred chhHHHHhhhhhh
Q 012833 315 DPYFQEAKKFSKP 327 (455)
Q Consensus 315 ~Py~~e~k~~~~p 327 (455)
+.|+..++..++-
T Consensus 146 d~ylK~vR~LaRe 158 (174)
T 2p22_A 146 DTFVKQGRELARQ 158 (174)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 191
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=56.08 E-value=65 Score=27.89 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sL 99 (455)
+++.....+.....+.++++.+
T Consensus 28 Leek~~~~e~~~~~~~~Elee~ 49 (130)
T 3cl3_D 28 LEGRARAASEQARQLESEREAL 49 (130)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4444444445555555555443
No 192
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=56.03 E-value=54 Score=31.87 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 168 DEQKSKIRKTERALKVAEEEMMRAKFE 194 (455)
Q Consensus 168 eEqekkI~elE~~Lq~lEeeL~kaq~E 194 (455)
...+.+++.++.++..++.++..++..
T Consensus 125 ~~a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 125 NNAKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 193
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=55.74 E-value=60 Score=34.06 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012833 171 KSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (455)
Q Consensus 171 ekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ 200 (455)
..+..++..+++.++.++..++.+......
T Consensus 77 ~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 77 IAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555444433
No 194
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=55.65 E-value=53 Score=34.02 Aligned_cols=32 Identities=19% Similarity=0.048 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012833 169 EQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (455)
Q Consensus 169 EqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ 200 (455)
++..+..++.++++.++.++..++.+......
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555554443
No 195
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=55.47 E-value=56 Score=31.42 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 012833 181 LKVAEEEMMRAKFEAT 196 (455)
Q Consensus 181 Lq~lEeeL~kaq~E~~ 196 (455)
+..++.++..++.+..
T Consensus 130 l~~~~a~l~~a~a~l~ 145 (341)
T 3fpp_A 130 IGTIDAQIKRNQASLD 145 (341)
T ss_dssp HHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 196
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=55.36 E-value=99 Score=26.43 Aligned_cols=22 Identities=0% Similarity=0.075 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 163 LQKINDEQKSKIRKTERALKVA 184 (455)
Q Consensus 163 Lek~~eEqekkI~elE~~Lq~l 184 (455)
+.+.+.+++..|...+..+...
T Consensus 80 Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 80 YEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444333333
No 197
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=54.83 E-value=2.1e+02 Score=30.10 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=11.5
Q ss_pred cccCcccccccchhhh
Q 012833 383 HELTSPLATKELEWFA 398 (455)
Q Consensus 383 ~e~~~~~a~~el~w~~ 398 (455)
|=+|+||-++..+.|-
T Consensus 365 HiYtaPwDSD~V~ifh 380 (526)
T 3iyk_A 365 HVYSAPWDSDDVFFFH 380 (526)
T ss_pred EEecCCCCCCcEEEEE
Confidence 4567888777777665
No 198
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=54.75 E-value=11 Score=36.24 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 153 ISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 153 l~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
+.+++.+++.+...++.+...+.++.+++..+++++.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333334444444444444444433
No 199
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=54.71 E-value=1.5e+02 Score=28.22 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~ 103 (455)
+.|.++-.++.-|-.++.+.+.......++....=+.|+..|..++.....=+.++.++
T Consensus 62 ddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I 120 (234)
T 3plt_A 62 DDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEI 120 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45777888888888888888888777777777777777777777766666555554443
No 200
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=54.12 E-value=33 Score=33.10 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 164 QKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 164 ek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+......+.++..++.++..++..+..++....
T Consensus 120 ~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~ 152 (341)
T 3fpp_A 120 ATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLD 152 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344444455555555566666655554443
No 201
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.53 E-value=7.3 Score=28.75 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=14.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012833 41 SPLKIELDQLKSKIRSLESHIDEKTQEL 68 (455)
Q Consensus 41 ~~l~~eL~~lr~kI~~Leski~ele~eI 68 (455)
.+++.++++++.++..|..+++++.+++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554443
No 202
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=53.43 E-value=95 Score=25.66 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~ 180 (455)
+..+++++..++.-+. +.+......-++..++..++.+.......-+..++++++.|+.|.++
T Consensus 31 l~~A~dKl~~A~~Am~-------~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqE 93 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMT-------AESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQ 93 (98)
T ss_dssp HHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333 33333333444444444444444444444444444444444444443
No 203
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=52.96 E-value=1.5e+02 Score=27.66 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~L 181 (455)
++..|..+.++++.+.+.+..+++++-..+.+.|. ..+..--.-+++.+.+|++++++|
T Consensus 140 ~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~------~L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 140 KNEHLQKENERLLRDWNDVQGRFEKAVSAKEALET------DLYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444455666666666665555555555555543 222333344455555666665443
No 204
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=52.96 E-value=81 Score=28.00 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012833 112 DKAHARADELEKQIDNLK 129 (455)
Q Consensus 112 ~~Ae~~i~eLe~qIe~Lk 129 (455)
.++.+++...+..++.-+
T Consensus 23 ~qL~nrla~~~am~~sqq 40 (158)
T 3tul_A 23 SQLESRLAVWQAMIESQK 40 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 205
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=52.70 E-value=40 Score=32.85 Aligned_cols=6 Identities=0% Similarity=-0.108 Sum_probs=2.8
Q ss_pred cccCCh
Q 012833 207 SAWLPP 212 (455)
Q Consensus 207 Gawl~P 212 (455)
|.|+.|
T Consensus 173 G~~v~~ 178 (369)
T 4dk0_A 173 GQTVNS 178 (369)
T ss_dssp TCBCCT
T ss_pred CCCccC
Confidence 444444
No 206
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=52.24 E-value=33 Score=35.17 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 012833 170 QKSKIRKTERA 180 (455)
Q Consensus 170 qekkI~elE~~ 180 (455)
++.++.+++.+
T Consensus 83 ~~~~~~~~~~~ 93 (421)
T 1ses_A 83 LEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 207
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=51.22 E-value=1.9e+02 Score=28.46 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=16.5
Q ss_pred hhhhhccccCChHHHHHHHHHHHHHHhhhhhcCcchHHHH
Q 012833 201 ELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVA 240 (455)
Q Consensus 201 ei~~~gGawl~Pw~~~~~~~~~~~~~~~w~~~g~P~~~~~ 240 (455)
.++.-||...|. +..|++ +.+|..+-+-|
T Consensus 101 rLs~pgg~~dpr--------L~~LAe---~~GGvlLseiY 129 (302)
T 3ibp_A 101 RLSQPGGSEDQR--------LNALAE---RFGGVLLSEIY 129 (302)
T ss_dssp HHHSCCCCCCHH--------HHHHHH---HSSSEEHHHHS
T ss_pred HHcCCCCCCCHH--------HHHHHH---HhCCEehhhhh
Confidence 356667888776 444444 34566555444
No 208
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=50.63 E-value=10 Score=29.67 Aligned_cols=53 Identities=26% Similarity=0.429 Sum_probs=29.7
Q ss_pred hhhchhHHHHhhhhhhHHHHHH-----hhccchhHhHHHhhcchHHHHHHHHHHHHHH
Q 012833 312 EVVDPYFQEAKKFSKPYIDQVA-----TVAKPHVDNVRVALKPYTKKVVRAYGKFLKS 364 (455)
Q Consensus 312 ~~~~Py~~e~k~~~~py~~qa~-----~~~~p~~~~~~~~~~P~~~~v~~~~~~~~~~ 364 (455)
..++-|+|.+-+..+--++.|+ +-.+-|+++-+.-+.|.+.++.+-+-.|+.+
T Consensus 9 sl~SqYfQt~TdyGKDL~EKak~~ElQ~QakaYfektqeqltPlvkkagTdl~nFlS~ 66 (77)
T 2ou1_A 9 SLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSY 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHTTTSHHHHTHHHHTTC-CHH
T ss_pred HHHHHHHHHHHHHhHHHHHHcccHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHH
Confidence 3344555555555555544443 3455666677777777777776666555544
No 209
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=50.37 E-value=96 Score=24.82 Aligned_cols=59 Identities=14% Similarity=0.340 Sum_probs=36.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 40 ~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
++.++.+|.+-+.-|+.|..++.+...+-+- .+|.+.+..+++....+.+|+..+.-+-
T Consensus 24 ~~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNp--aeIA~~~~~L~qAraDL~~l~r~~av~g 82 (90)
T 4b6x_A 24 GAALRQEIEDKQLMVNNLTDELQDAIDEANP--AEIANTSQQLRHARADLADLQRRFAVLR 82 (90)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666666655555444332 5677777777777777777776666554
No 210
>2ynz_A General control protein GCN4, putative inner MEMB protein; membrane protein, DALL domain, DALL2, trimeric autotransport adhesin, TAA; 1.40A {Saccharomyces cerevisiae} PDB: 1uo2_A 1gcl_A 2ccn_A 1uo0_A 1unz_A 1uny_A 2bni_A* 1u9h_A*
Probab=50.22 E-value=49 Score=29.53 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 49 ~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
++..+|..+-++|--++.+|.....+|....+.+.+....|..+...|..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~~GSQL~~tn~~Va~nt~~ia~vn~~i~~l~ 54 (154)
T 2ynz_A 3 QIEDKIEEILSKIYHIENEIARIKKLIYETNQKVDQNTSAIADINTSITNLG 54 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHhccchhhhhhhhhccc
Confidence 4567788888888888888888888888888888888888888888887764
No 211
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=49.93 E-value=80 Score=23.80 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHID 62 (455)
Q Consensus 50 lr~kI~~Leski~ 62 (455)
++.++..++.-+.
T Consensus 11 le~kl~~lEnIv~ 23 (65)
T 3m0d_C 11 LEGKLRVFENIVA 23 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 212
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=48.94 E-value=1.4e+02 Score=26.42 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhch
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGK 71 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k 71 (455)
+++|+++|....+.|....+.-+.+
T Consensus 22 l~qL~nrla~~~am~~sqqq~~eql 46 (158)
T 3tul_A 22 LSQLESRLAVWQAMIESQKEMGIQV 46 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665555544433333
No 213
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=48.67 E-value=1.9e+02 Score=29.09 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccccCCh
Q 012833 170 QKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPP 212 (455)
Q Consensus 170 qekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei~~~gGawl~P 212 (455)
...-+++....++.+.-...+++.+..-+...+.+.||.=+||
T Consensus 357 ~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~p~ 399 (406)
T 4dyl_A 357 KRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEHLGPGEPPP 399 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC
T ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3344556666666666666677777667777788889888887
No 214
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.00 E-value=18 Score=26.65 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVV 75 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eI 75 (455)
..+.+.|+.+.+.|+.++.++..++++....+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888887777666655443
No 215
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.74 E-value=39 Score=34.66 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
+.|+.++..++.++.+++.+++....++..+..++.+.+..-..|.++|.++.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555555555555555555555555555555555555555555555555443
No 216
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=47.51 E-value=82 Score=30.56 Aligned_cols=43 Identities=19% Similarity=0.429 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 58 eski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
..+...+..+|...+.++.++++.+++.-..|..++.+|..+.
T Consensus 215 d~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 215 DQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIK 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777788888788888888888888888888777777663
No 217
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.31 E-value=97 Score=23.96 Aligned_cols=19 Identities=11% Similarity=0.377 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 151 KKISDLSAKLEKLQKINDE 169 (455)
Q Consensus 151 kkl~EleskveeLek~~eE 169 (455)
..+.+++.++..++...+.
T Consensus 29 ~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 218
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=47.14 E-value=1.3e+02 Score=25.42 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 012833 127 NLKKESEKQQKEKE 140 (455)
Q Consensus 127 ~LkkeLE~~~~e~e 140 (455)
+|++++...+.++.
T Consensus 26 eLq~Ei~~~E~QL~ 39 (113)
T 4fi5_A 26 ELQREINAHEGQLV 39 (113)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 219
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=46.99 E-value=1.2e+02 Score=25.08 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 152 kl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
.+-+++..++.++.....++..-...-.++..++.++.++..|...+
T Consensus 38 EYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433344445555555555555555444
No 220
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=46.83 E-value=1.7e+02 Score=26.52 Aligned_cols=9 Identities=22% Similarity=0.069 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 012833 117 RADELEKQI 125 (455)
Q Consensus 117 ~i~eLe~qI 125 (455)
-+...+.|+
T Consensus 60 ~ik~FeeQ~ 68 (170)
T 3l4q_C 60 TIKIFEEQG 68 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333433
No 221
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.16 E-value=95 Score=25.03 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 012833 170 QKSKIRKTERALK 182 (455)
Q Consensus 170 qekkI~elE~~Lq 182 (455)
+..+|..++.++.
T Consensus 55 Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 55 LQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 222
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=45.65 E-value=38 Score=26.46 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHH-------HHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDE-------VVAQKEKAIQDKSE 87 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~-------eIk~~e~~I~e~e~ 87 (455)
++.++.++..|..+++.....++..+. .+.+++...++.+.
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~ 51 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666665555555 55555555555443
No 223
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=45.49 E-value=1e+02 Score=25.40 Aligned_cols=7 Identities=57% Similarity=0.710 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 012833 89 IVSLQKE 95 (455)
Q Consensus 89 I~eLq~e 95 (455)
|..|..+
T Consensus 56 I~~L~~e 62 (96)
T 1t3j_A 56 IARLSKE 62 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 224
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=45.44 E-value=1e+02 Score=23.59 Aligned_cols=10 Identities=0% Similarity=0.272 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 012833 45 IELDQLKSKI 54 (455)
Q Consensus 45 ~eL~~lr~kI 54 (455)
.-|.+++...
T Consensus 9 ~il~eiRaQY 18 (77)
T 3trt_A 9 AAMRDVRQQY 18 (77)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 225
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=45.43 E-value=52 Score=28.69 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=17.9
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 68 I~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
|..++++-=+++..+.....+|.+|..+|.+++
T Consensus 74 I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 74 VDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 333444444455555555566666666666654
No 226
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=45.35 E-value=2.7e+02 Score=28.62 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESEKQQKEKE------ALEARAIEAEKKISDLSAKLEKL--------QKINDEQKSKIRK 176 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e------eLEae~~elEkkl~EleskveeL--------ek~~eEqekkI~e 176 (455)
....++++..|+.+=+.|+.........+. ..-..+.+++.-+.+.+..+..- ....+.+-++...
T Consensus 167 s~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~Da~EaesWL~eke~~l~s~y~~D~g~d~~~~e~LLkkh~~ 246 (450)
T 3r6n_A 167 SDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEK 246 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccccCcCCCCHHHHHHHHHHHHH
Confidence 445666666666666665554444443333 23334555555555555444332 1123456677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 012833 177 TERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 177 lE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
+++.+..++..+..+..++..+
T Consensus 247 le~~l~~~~~~I~~L~~qA~~l 268 (450)
T 3r6n_A 247 EREKILEYKRQVQNLVNKSKKI 268 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888777754
No 227
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=44.33 E-value=1.4e+02 Score=24.99 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012833 160 LEKLQKINDEQKSKIRK 176 (455)
Q Consensus 160 veeLek~~eEqekkI~e 176 (455)
++.++++.+-+-.+++.
T Consensus 34 ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 34 VSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 228
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=43.97 E-value=43 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 77 QKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 77 ~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
++|+.++++-..+.+|++++..+
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444444444444433
No 229
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=43.68 E-value=35 Score=22.10 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 012833 49 QLKSKIRSLESHIDE 63 (455)
Q Consensus 49 ~lr~kI~~Leski~e 63 (455)
.++++|..|..+|..
T Consensus 6 alkqeiaalkkeiaa 20 (33)
T 4dzn_A 6 ALKQEIAALKKEIAA 20 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 230
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=43.55 E-value=58 Score=27.89 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 80 KAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (455)
Q Consensus 80 ~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~Lk 129 (455)
.+|..++..+..++.+++.+...++. +-+.+...++..|+++|.+++
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~---~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAA---DKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCT---THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555444432 344455555555555555554
No 231
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=43.23 E-value=22 Score=34.23 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 158 AKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 158 skveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a 199 (455)
..+..++..+..+..+...+...++.+..++.+++.|...++
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666666666666666665443
No 232
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=43.14 E-value=33 Score=35.16 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012833 75 VAQKEKAIQDKSERIVSLQKELSSLQKK 102 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~eI~sLQkK 102 (455)
+-+++..-++...++.+|+.+...+.++
T Consensus 32 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~ 59 (425)
T 2dq3_A 32 VLELDKRRREIIKRLEALRSERNKLSKE 59 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 233
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=42.85 E-value=94 Score=22.57 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012833 148 EAEKKISDLSAKLEKLQK 165 (455)
Q Consensus 148 elEkkl~EleskveeLek 165 (455)
.+|..+..+++.+++|+.
T Consensus 9 fAERsV~KLek~ID~LEd 26 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLED 26 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 234
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=42.55 E-value=84 Score=21.88 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 73 EVVAQKEKAIQDKSERIVSLQKELSS 98 (455)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~eI~s 98 (455)
+++..++..++-.++.+..+.++++.
T Consensus 20 eelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555543
No 235
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=42.45 E-value=32 Score=26.59 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 012833 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (455)
Q Consensus 49 ~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e 84 (455)
.+...|..-+..|.+++..+.+++.+|.++...+.+
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666555555555555444433
No 236
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=42.40 E-value=1.3e+02 Score=31.63 Aligned_cols=27 Identities=7% Similarity=-0.061 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012833 174 IRKTERALKVAEEEMMRAKFEATSRSK 200 (455)
Q Consensus 174 I~elE~~Lq~lEeeL~kaq~E~~~~a~ 200 (455)
..++..+++.++.++..++.+......
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554443
No 237
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=42.20 E-value=51 Score=27.63 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 57 Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
|+....++=..|..++++-=+++..+.....+|.+|..++.++
T Consensus 47 L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 47 LREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 3344444444444444444445555555555555555555444
No 238
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=42.18 E-value=1.5e+02 Score=24.82 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~El 156 (455)
.=+..|+..|...+..+...+...+.......+...+.+.+
T Consensus 74 ~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~ 114 (150)
T 3ajw_A 74 QFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAW 114 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333333333333
No 239
>3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural PROT binding protein; 1.70A {Acidianus two-tailed virus}
Probab=41.18 E-value=31 Score=29.82 Aligned_cols=63 Identities=17% Similarity=0.028 Sum_probs=46.6
Q ss_pred hHHHhhhhHHHHHHHHhhhcchhHHHH---HhhhchhHHHHhhhhhhHHHHHHhhccchhHhHHHh
Q 012833 284 HVQTLKTKTIEACEATKTAVTPHIIRV---QEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVA 346 (455)
Q Consensus 284 ~ve~~k~k~~p~~e~~k~~~~p~~~~~---~~~~~Py~~e~k~~~~py~~qa~~~~~p~~~~~~~~ 346 (455)
.-|.++..+-.+++.+|++..||=-+= ++.-.|-..=++-++.|-|+||+.|...--.+|+..
T Consensus 67 G~E~~keaIHeiIK~IreA~kPyr~~g~gf~~~pip~~via~v~s~~~~~~~~~~~~~~~~~~~~~ 132 (151)
T 3faj_A 67 GDERTKEAIHAIVKMISDAMKPYRNKGSGFQSQPIPGEVIAQVTSNPEYQQAKAFLASPATQVRNI 132 (151)
T ss_dssp TCHHHHHHHHHHHHHHHHHHGGGC-------CEECCHHHHHHHHHCHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhcccccCCCCccCCCCcHHHHHHHhcChHHHHHHHHhcCcHHHhhhh
Confidence 345667777788888999999987643 455677777899999999999999877666666654
No 240
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=41.08 E-value=3.8e+02 Score=29.11 Aligned_cols=27 Identities=0% Similarity=0.026 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 351 TKKVVRAYGKFLKSATTYHHQVQASVQ 377 (455)
Q Consensus 351 ~~~v~~~~~~~~~~a~~~h~q~q~~~~ 377 (455)
.+.+...|..+.+.+..-...++..+.
T Consensus 573 ~~~L~~rw~~L~~~~~~R~~~L~~~l~ 599 (863)
T 1sjj_A 573 PQEINGKWEHVRQLVPRRDQALMEEHA 599 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665554
No 241
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=41.01 E-value=1.5e+02 Score=24.42 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (455)
Q Consensus 144 ae~~elEkkl~EleskveeLek~~eEqekkI 174 (455)
+++.+........+..++++++.+..++++|
T Consensus 64 ArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 64 ARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333334444444443333
No 242
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=40.15 E-value=1.2e+02 Score=23.19 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+-+.+...+|..+.++..-..+|...+.++...++.++..+..+.........++.
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 62 (77)
T 1jth_B 7 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777777777888888888888887777777777666654
No 243
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=39.99 E-value=1.2e+02 Score=22.81 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 140 eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
.+-+.+...++..+.++..-..+|...+.++...++.++..+..+..-......++.
T Consensus 8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 64 (68)
T 1n7s_B 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777788888888888888888887777777776666554
No 244
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=39.72 E-value=1.8e+02 Score=24.91 Aligned_cols=29 Identities=7% Similarity=0.149 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
...-+++...++..+..|.+|+.-|...+
T Consensus 66 ~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 66 DWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555443
No 245
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=39.59 E-value=1.4e+02 Score=23.58 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 149 AEKKISDLSAKLEKLQKIND 168 (455)
Q Consensus 149 lEkkl~EleskveeLek~~e 168 (455)
+..++.+++..-+.|.....
T Consensus 83 i~~~l~~l~~rw~~L~~~~~ 102 (118)
T 3uul_A 83 IQEQMTLLNARWEALRVESM 102 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333
No 246
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=39.52 E-value=3.6e+02 Score=28.37 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 012833 354 VVRAYGKFLKSA 365 (455)
Q Consensus 354 v~~~~~~~~~~a 365 (455)
.+.+|..||..|
T Consensus 425 f~~Ay~eFf~~a 436 (526)
T 3iyk_A 425 LTEAYREFLNLA 436 (526)
T ss_pred HHHHHHHHHHHH
Confidence 455566666554
No 247
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=38.89 E-value=1.6e+02 Score=24.18 Aligned_cols=12 Identities=17% Similarity=0.291 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 012833 174 IRKTERALKVAE 185 (455)
Q Consensus 174 I~elE~~Lq~lE 185 (455)
+.+++.+|..+.
T Consensus 69 v~elqgEI~~Ln 80 (99)
T 3ni0_A 69 IKELENEVTKLN 80 (99)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 248
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=38.00 E-value=1.6e+02 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 123 KQIDNLKKESEKQQKEKEALEARA 146 (455)
Q Consensus 123 ~qIe~LkkeLE~~~~e~eeLEae~ 146 (455)
+++..+++.-..+++...+..-+.
T Consensus 21 eev~~lKq~RRtlKNRgyAq~CR~ 44 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQSCRY 44 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Confidence 455555555555555555444443
No 249
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=37.49 E-value=1.3e+02 Score=23.45 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~ 70 (455)
..+.++.+..|..+++++..+..++..
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ 30 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQ 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444444
No 250
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=37.46 E-value=1.5e+02 Score=23.31 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 156 LSAKLEKLQKINDEQKSKIR 175 (455)
Q Consensus 156 leskveeLek~~eEqekkI~ 175 (455)
+..+++.++..-+.+.....
T Consensus 83 i~~~l~~l~~rw~~L~~~~~ 102 (119)
T 3uun_A 83 VQEQMNLLNSRWECLRVASM 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 251
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=37.00 E-value=65 Score=27.02 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 72 DEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
+++-=+++..+.....+|.+|..++.++
T Consensus 62 EeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 62 QTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 3344445555555556666666666665
No 252
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=36.84 E-value=1.3e+02 Score=22.41 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 143 Eae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+.....++..+.++..-..+|...+.++...++.++..+..+.........++.
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~ 61 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLS 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777888888888888887777777776666554
No 253
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=36.47 E-value=1.9e+02 Score=24.21 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Ele 157 (455)
.++.++.+|..++..|+..++.+.++++=.=.++.++|--+++..
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~ 59 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQ 59 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666665555555555666666555543
No 254
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.36 E-value=1.1e+02 Score=21.56 Aligned_cols=10 Identities=60% Similarity=0.783 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 012833 121 LEKQIDNLKK 130 (455)
Q Consensus 121 Le~qIe~Lkk 130 (455)
|++.|.+|++
T Consensus 8 lrkkiarlkk 17 (52)
T 3he5_B 8 LRKKIARLKK 17 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 3444444443
No 255
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=35.77 E-value=1.4e+02 Score=22.47 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+-+.+...+++.+.++..-..+|...+.++...++.++..+..+.........++.
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 62 (69)
T 3b5n_B 7 ARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTD 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777777777777777777777777777666666554
No 256
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=35.66 E-value=1.6e+02 Score=22.98 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKES 132 (455)
Q Consensus 120 eLe~qIe~LkkeL 132 (455)
.++.++..++.++
T Consensus 16 ~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 16 EKEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 257
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=35.51 E-value=1.9e+02 Score=24.03 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKESEKQ 135 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeLE~~ 135 (455)
.+.-|...++.|.++-|+.
T Consensus 59 NItNLtdsV~~L~dDAed~ 77 (107)
T 2wps_A 59 NINNLSDSITTLMKQIEDK 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 4444455555554444433
No 258
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=35.21 E-value=63 Score=32.60 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (455)
Q Consensus 71 k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~ 136 (455)
.++.++.++..+++++++|..+..+++.- ....+..+++.++++|++.+++.+....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIEKR---------PENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhC---------cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555655555555311 1123455677777777777777666543
No 259
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=34.70 E-value=1.6e+02 Score=22.82 Aligned_cols=12 Identities=8% Similarity=0.027 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 012833 123 KQIDNLKKESEK 134 (455)
Q Consensus 123 ~qIe~LkkeLE~ 134 (455)
.++.+-+.+++.
T Consensus 10 ~kl~~Kq~EI~r 21 (74)
T 2q6q_A 10 FKLREKQNEIFE 21 (74)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 260
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=34.02 E-value=2.3e+02 Score=26.09 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 012833 108 AEQVDKAHARADELE 122 (455)
Q Consensus 108 ~eei~~Ae~~i~eLe 122 (455)
..+++.++.++..++
T Consensus 97 ~~~~~~a~~~~~~a~ 111 (277)
T 2f1m_A 97 KQEYDQALADAQQAN 111 (277)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 261
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=33.41 E-value=1.9e+02 Score=23.45 Aligned_cols=8 Identities=0% Similarity=0.401 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 012833 92 LQKELSSL 99 (455)
Q Consensus 92 Lq~eI~sL 99 (455)
+..+|..+
T Consensus 21 i~~kl~~i 28 (102)
T 1vcs_A 21 ITSKIARV 28 (102)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHh
Confidence 33333333
No 262
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=33.38 E-value=95 Score=28.40 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=17.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 68 I~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
|..++++--+++..+.....+|.+|..+|.+++
T Consensus 74 I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 74 VDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 333344444455555555555666666665554
No 263
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=33.20 E-value=98 Score=31.16 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 108 AEQVDKAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 108 ~eei~~Ae~~i~eLe~qIe~LkkeLE 133 (455)
.+-+..+++++..+++++++++..++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIE 271 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566666666666666665553
No 264
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=33.08 E-value=1.3e+02 Score=22.67 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=12.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEK 64 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~el 64 (455)
.--.|.=+++.-+..-+.+|..+
T Consensus 10 it~qeylevK~ALaaSeAkiQQL 32 (63)
T 2w6a_A 10 VTLQEYLELKKALATSEAKVQQL 32 (63)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhHHHHHHH
Confidence 33455555666666666555544
No 265
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=33.02 E-value=3.5e+02 Score=26.26 Aligned_cols=9 Identities=0% Similarity=0.073 Sum_probs=0.0
Q ss_pred cchHHHHHH
Q 012833 234 KPAMDVAIQ 242 (455)
Q Consensus 234 ~P~~~~~~~ 242 (455)
.|+++.|..
T Consensus 315 ~~~~~~~~s 323 (341)
T 3zx6_A 315 SAVVKTVTP 323 (341)
T ss_dssp ---------
T ss_pred hHHhccCCC
Confidence 445555543
No 266
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=32.94 E-value=2.1e+02 Score=23.58 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 012833 114 AHARADELEKQ 124 (455)
Q Consensus 114 Ae~~i~eLe~q 124 (455)
+..++.+++.+
T Consensus 24 A~QKLkdA~~~ 34 (96)
T 2ic9_A 24 TRQKLKDAERA 34 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 267
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=32.89 E-value=79 Score=20.18 Aligned_cols=11 Identities=45% Similarity=0.616 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 012833 151 KKISDLSAKLE 161 (455)
Q Consensus 151 kkl~Eleskve 161 (455)
+++..++++++
T Consensus 8 kkcaalesklq 18 (31)
T 3ljm_A 8 KKCAALESKLQ 18 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 268
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=32.67 E-value=1.5e+02 Score=22.00 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=27.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKES 132 (455)
Q Consensus 68 I~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeL 132 (455)
|.++..+|.+++..|.++..-..+|..=+. .+.+.++..+.++......++.-..++
T Consensus 4 i~eR~~~i~~ie~~i~eL~~iF~dla~lV~--------eQge~id~Ie~nv~~a~~~v~~g~~eL 60 (65)
T 1gl2_B 4 MHERESSIRQLEADIMDINEIFKDLGMMIH--------EQGDVIDSIEANVESAEVHVQQANQQL 60 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655555444444332 123344444555555554444444333
No 269
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=32.31 E-value=1.9e+02 Score=22.94 Aligned_cols=17 Identities=6% Similarity=0.333 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQID 126 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe 126 (455)
++..+..++.+++.+.+
T Consensus 20 QL~~A~QKLkdA~~~~e 36 (78)
T 2ic6_A 20 RLVTTRQKLKDAERAVE 36 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33344444444444433
No 270
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=32.26 E-value=2e+02 Score=24.62 Aligned_cols=33 Identities=6% Similarity=0.122 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 157 eskveeLek~~eEqekkI~elE~~Lq~lEeeL~ 189 (455)
..+++.++..+.+++..++.++..+..++..+.
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 271
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=32.22 E-value=2.1e+02 Score=23.49 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
.++....++-.-..++...+++....++..+..++......+....++.++..
T Consensus 25 ~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (109)
T 3hd7_B 25 KLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555666666666666655543
No 272
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=32.08 E-value=1.4e+02 Score=21.56 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQ 135 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~ 135 (455)
-|+..+..|++.|++|+.++...
T Consensus 9 fAERsV~KLek~ID~LEdeL~~e 31 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQ 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555544433
No 273
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=32.04 E-value=1.8e+02 Score=22.62 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 163 LQKINDEQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 163 Lek~~eEqekkI~elE~~Lq~lEeeL~ 189 (455)
+..+++++...|+.+......+...+.
T Consensus 38 Ig~El~~Qn~lLd~l~~~~d~~~~~L~ 64 (82)
T 2nps_D 38 IGGELEEQAVMLEDFSHELESTQSRLD 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 274
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.03 E-value=2e+02 Score=23.27 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (455)
Q Consensus 148 elEkkl~EleskveeLek~~eEqekkI~el 177 (455)
++|.....+..+++.|..+.......++.+
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 275
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=32.03 E-value=2.8e+02 Score=24.92 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVV 75 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eI 75 (455)
++.-.++...+..++.+++..+..++
T Consensus 76 l~~I~~e~r~~~~~Lr~ql~akr~EL 101 (175)
T 3lay_A 76 AQKIYDDYYTQTSALRQQLISKRYEY 101 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433333
No 276
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=32.00 E-value=47 Score=33.03 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=12.8
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 68 I~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
|...+..|..+...+..++.+|+.|+++|..|
T Consensus 13 Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l 44 (319)
T 1fzc_C 13 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 44 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334334444444444444444333
No 277
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.30 E-value=81 Score=23.07 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
..++.+++..+.+++.+...|..++..|+.
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666553
No 278
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=31.17 E-value=2.7e+02 Score=24.44 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 137 KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (455)
Q Consensus 137 ~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~el 177 (455)
..+..++.|+..+......+...++++-.-.++...++..+
T Consensus 122 ~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~l 162 (175)
T 4abx_A 122 EALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGL 162 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 33445555555554444444444444444444444444443
No 279
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.93 E-value=62 Score=24.03 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 012833 162 KLQKINDEQK 171 (455)
Q Consensus 162 eLek~~eEqe 171 (455)
.|.....++.
T Consensus 33 ~L~~~n~~L~ 42 (62)
T 1jnm_A 33 TLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 280
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=30.90 E-value=1.6e+02 Score=21.69 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (455)
Q Consensus 115 e~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Ele 157 (455)
+..+..++.++..++.+.+.+..+-..|=+-+-.++.++..+.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444455555555555554444433333333334444444333
No 281
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.84 E-value=1.1e+02 Score=19.78 Aligned_cols=16 Identities=38% Similarity=0.314 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 124 QIDNLKKESEKQQKEK 139 (455)
Q Consensus 124 qIe~LkkeLE~~~~e~ 139 (455)
+|..|++++..++.++
T Consensus 10 eiaalkkeiaalkfei 25 (33)
T 4dzn_A 10 EIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 282
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=30.74 E-value=3.2e+02 Score=25.08 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
+....+.....++.+.-|-++.+.|....
T Consensus 135 D~~~~e~~e~kn~le~~i~~~~~~l~~~~ 163 (227)
T 1u00_A 135 DVKARMLAEQKVEAARVLESLHGALAADA 163 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444455556666666666666666543
No 283
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=29.57 E-value=1.8e+02 Score=21.90 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 143 Eae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+.....++..+.++..-..+|...+.++...++.++..+..+.........++.
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~ 58 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQ 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777777777777777777666666554
No 284
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=29.48 E-value=1.8e+02 Score=21.89 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 80 KAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 80 ~~I~e~e~~I~eLq~eI~sLQ 100 (455)
..|+++=+--..++++|.-+|
T Consensus 27 AkiQQLmkVN~~ls~Elr~mQ 47 (63)
T 2w6a_A 27 AKVQQLMKVNSSLSDELRKLQ 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhHHHHHHH
Confidence 333333333333333333333
No 285
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=29.36 E-value=92 Score=31.84 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 72 DEVVAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~eI~ 97 (455)
+++-.++...++++..+.+.++.+|.
T Consensus 36 ~~~~r~~~~~~~~l~~~~n~~sk~i~ 61 (425)
T 2dq3_A 36 DKRRREIIKRLEALRSERNKLSKEIG 61 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443
No 286
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=29.19 E-value=1.8e+02 Score=25.36 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=46.8
Q ss_pred hHHHHHhhhhhhHHHHHHhhhc------cc-chhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHHH
Q 012833 258 HVETIKAKWIPAVKEQWVVFTT------NV-EPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYID 330 (455)
Q Consensus 258 ~~~~~~~k~~p~~~~~w~~~~~------~~-~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~~ 330 (455)
|...+..|+..+|++.+..+-. ++ -|+++++.+-..-..+++.+.+-| ..++...+|-+..||+..+-.+.
T Consensus 20 H~~eI~~KLv~Im~~r~~~~l~~Wd~k~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~--~~v~~Im~~Vf~~fk~~l~~~~~ 97 (141)
T 3n1e_A 20 HIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSPCFRNICKQMTKMHEAIFDLLPE--EQTQMLFLRINASYKLHLKKQLS 97 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCSSSSCHHHHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888888887775433 33 477777777666655554444444 45666777777777777777776
Q ss_pred HH
Q 012833 331 QV 332 (455)
Q Consensus 331 qa 332 (455)
++
T Consensus 98 ~~ 99 (141)
T 3n1e_A 98 HL 99 (141)
T ss_dssp HT
T ss_pred Hc
Confidence 54
No 287
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.83 E-value=5.5e+02 Score=27.29 Aligned_cols=12 Identities=8% Similarity=0.282 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 012833 182 KVAEEEMMRAKF 193 (455)
Q Consensus 182 q~lEeeL~kaq~ 193 (455)
..++.+|..++.
T Consensus 570 ~~~~~ei~~l~~ 581 (592)
T 1f5n_A 570 RIMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444333
No 288
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.75 E-value=97 Score=24.11 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~ 146 (455)
.|-+=|..|..+++.++.+++.+..+...|+.++
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444444444444444333
No 289
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=28.66 E-value=2.4e+02 Score=23.06 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012833 80 KAIQDKSERIVSLQKEL 96 (455)
Q Consensus 80 ~~I~e~e~~I~eLq~eI 96 (455)
..|...+..|+.++...
T Consensus 10 ~li~t~s~niq~l~k~~ 26 (97)
T 1hs7_A 10 NLIETFAEQSRVLEKEC 26 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444333333
No 290
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.65 E-value=5.6e+02 Score=27.27 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 131 ESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (455)
Q Consensus 131 eLE~~~~e~eeLEae~~elEkkl~EleskveeLe 164 (455)
+++....+.+..+.+...++.+..+.+..++..+
T Consensus 488 ~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~ 521 (592)
T 1f5n_A 488 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQKE 521 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443333
No 291
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=28.23 E-value=2e+02 Score=23.51 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 012833 87 ERIVSLQKELSSLQKKET 104 (455)
Q Consensus 87 ~~I~eLq~eI~sLQkK~s 104 (455)
+-|.+.+.+|..+|+-+.
T Consensus 32 qvikEIs~Kv~~Iqn~~L 49 (92)
T 1x4t_A 32 QIIGEISKKVAQIQNAGL 49 (92)
T ss_dssp HHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhhCCCC
Confidence 445555666666665444
No 292
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=28.07 E-value=4e+02 Score=26.75 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhh
Q 012833 54 IRSLESHIDEKTQEL 68 (455)
Q Consensus 54 I~~Leski~ele~eI 68 (455)
+..+..+..+++..+
T Consensus 5 l~~~~~r~~el~~~~ 19 (354)
T 3d5a_X 5 LDRLEEEYRELEALL 19 (354)
T ss_dssp HHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444433
No 293
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=27.05 E-value=1.2e+02 Score=25.27 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=31.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 012833 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (455)
Q Consensus 41 ~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~ 85 (455)
..|+.-..++-..|..|+++.-+++..+...+-+|.++...+.+.
T Consensus 45 ~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 346777777888888888888888777777666666665555543
No 294
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.95 E-value=2.3e+02 Score=22.22 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
+|..++..+..+..|+.+++.|-
T Consensus 5 lEEKv~~LE~sld~LQTrfARLL 27 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARIL 27 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555444443
No 295
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=26.82 E-value=47 Score=27.60 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=23.1
Q ss_pred ChH----HHHHHHHHHHHHHhhhhhcCcchHHHHH
Q 012833 211 PPW----LAVHLLQCQSLIETHWNAHGKPAMDVAI 241 (455)
Q Consensus 211 ~Pw----~~~~~~~~~~~~~~~w~~~g~P~~~~~~ 241 (455)
||| |+.++.-++.++...|. ||.|+++.--
T Consensus 24 ~~~~~~Ll~eR~~l~~~Va~~K~~-~g~pi~dp~R 57 (104)
T 2gtv_X 24 WPWAEKLIAERNSLAKDVAEIKNQ-LGIPINDPER 57 (104)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHH-HTSCSCCHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH-CCCCCcChHH
Confidence 777 67788888888888875 6889887653
No 296
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=26.81 E-value=2.2e+02 Score=21.95 Aligned_cols=40 Identities=13% Similarity=0.363 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (455)
Q Consensus 149 lEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL 188 (455)
.....++.......+...+++....+...-...+..+.++
T Consensus 53 F~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~ 92 (98)
T 3gwk_C 53 FEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADI 92 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555544444443
No 297
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=26.51 E-value=1.5e+02 Score=24.02 Aligned_cols=16 Identities=6% Similarity=0.285 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 84 DKSERIVSLQKELSSL 99 (455)
Q Consensus 84 e~e~~I~eLq~eI~sL 99 (455)
+.+.-+++++..|.+|
T Consensus 40 El~~~l~el~e~l~DL 55 (95)
T 2c5k_T 40 EIQDILKDVEETIVDL 55 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 298
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=26.45 E-value=3.7e+02 Score=24.48 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=7.6
Q ss_pred HHHHHHHhhhhhcCc
Q 012833 220 QCQSLIETHWNAHGK 234 (455)
Q Consensus 220 ~~~~~~~~~w~~~g~ 234 (455)
+++..-..+|++-|.
T Consensus 175 H~RreK~~rw~e~~~ 189 (192)
T 2p22_C 175 HLRREKLATWDKQGN 189 (192)
T ss_dssp HHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHhccc
Confidence 344444556665553
No 299
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=26.25 E-value=50 Score=31.54 Aligned_cols=64 Identities=8% Similarity=0.066 Sum_probs=44.4
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhh
Q 012833 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI--------QDKSERIVSLQKELSSLQKKE 103 (455)
Q Consensus 40 ~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I--------~e~e~~I~eLq~eI~sLQkK~ 103 (455)
+..+..++..++.++.+++..++.+++++++.-+.-...+.-| ...-..+++...+|..+|.-+
T Consensus 159 A~~L~q~i~~ln~k~~~~E~si~~L~~qLeElv~~k~~~dqLi~~RD~~tR~~fv~LLNEKK~KIR~qqrlL 230 (246)
T 1z56_A 159 ADKLYKDICCVNDSYRNIKESDSSNRNRVEQLARERELLDKLLETRDERTRAMMVTLLNEKKKKIRELHEIL 230 (246)
T ss_dssp CTTSGGGTTHHHHHHHHTTTTTTHHHHHHHHTTTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456667777888888888888888888777777766666666 555566666666666666543
No 300
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=26.08 E-value=1.8e+02 Score=27.43 Aligned_cols=95 Identities=8% Similarity=0.230 Sum_probs=58.1
Q ss_pred hhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHHHHHHhhccchhHhHHHh-----hcchHHHHHHH
Q 012833 283 PHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVA-----LKPYTKKVVRA 357 (455)
Q Consensus 283 p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~~qa~~~~~p~~~~~~~~-----~~P~~~~v~~~ 357 (455)
|+.+.+-.-+..+|..+=+...|-++++-....-|..- +..+...++-|+|.+... -.| ...-
T Consensus 5 ~~~d~~~~~t~~~y~nimeqfnP~l~nlv~lg~~Y~kA--------l~a~~~A~~~y~dA~~Kige~A~~S~----~ske 72 (222)
T 3ok8_A 5 PEMDQFYRSTMAIYKSIMEQFNPALENLVYLGNNYLRA--------FHALSEAAEVYFSAIQKIGEQALQSS----TSQI 72 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHSS----SCHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhccCC----chhH
Confidence 45566666777778878888888888886665555442 222333334444443322 122 2245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--cccCccc
Q 012833 358 YGKFLKSATTYHHQVQASVQEMLKK--HELTSPL 389 (455)
Q Consensus 358 ~~~~~~~a~~~h~q~q~~~~~~l~~--~e~~~~~ 389 (455)
+|..+...+..|+.+++...+.++. -++.-|+
T Consensus 73 LG~vL~qis~~hR~i~~~le~~~k~f~~elI~pL 106 (222)
T 3ok8_A 73 LGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHM 106 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888999999999886665432 2455555
No 301
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=26.01 E-value=63 Score=26.09 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 012833 51 KSKIRSLESHI 61 (455)
Q Consensus 51 r~kI~~Leski 61 (455)
+.++.+|++++
T Consensus 14 ~~q~~~L~~ei 24 (85)
T 3viq_B 14 EQQKEQLESSL 24 (85)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 302
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=25.72 E-value=54 Score=28.41 Aligned_cols=20 Identities=20% Similarity=0.599 Sum_probs=8.1
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHI 61 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski 61 (455)
++..+|.+|..++.+|+.++
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l 39 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKL 39 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 303
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=25.39 E-value=1.9e+02 Score=30.33 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=33.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ-----KEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 40 ~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~-----~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
+...+.....|...+..+..++++....++..++-|.. .-++|.+....|..|+.....++.
T Consensus 49 ~v~VQ~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~~L~~~GD~~vi~qI~~n~~dI~~Lk~~~~~~~~ 115 (487)
T 2bsg_A 49 TVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIEALAQIGINKKDISDLKTLTSEHTE 115 (487)
T ss_pred hhhhhhhHHHHhhhHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHhhHHHHHHHhcchhhhhh
Confidence 34455666666666666666666666666665554433 223444444555555554444443
No 304
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=25.30 E-value=2.9e+02 Score=22.92 Aligned_cols=7 Identities=29% Similarity=0.567 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 012833 153 ISDLSAK 159 (455)
Q Consensus 153 l~Elesk 159 (455)
++++-++
T Consensus 78 ~~~~~~~ 84 (107)
T 2wps_A 78 IEEILSK 84 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 305
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=24.99 E-value=2.4e+02 Score=21.87 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+-+.+...++..+.++..-..+|...+.++...++.++..+..+.........++.
T Consensus 18 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~ 73 (83)
T 1sfc_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777777777777777777777777777777776666665554
No 306
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=24.77 E-value=1.9e+02 Score=28.07 Aligned_cols=40 Identities=8% Similarity=0.218 Sum_probs=29.8
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (455)
Q Consensus 64 le~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~ 103 (455)
.++++.++...|...++.+.+.++.|+++-++|.+|..++
T Consensus 214 Td~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~ 253 (268)
T 2yo3_A 214 TDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEI 253 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777888888888888888888888777776443
No 307
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.36 E-value=2.8e+02 Score=22.28 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 012833 91 SLQKELSSL 99 (455)
Q Consensus 91 eLq~eI~sL 99 (455)
++...|..+
T Consensus 16 ~i~~~l~~~ 24 (97)
T 3onj_A 16 QAKASLAEA 24 (97)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHHH
Confidence 333333333
No 308
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=23.81 E-value=4e+02 Score=28.66 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 72 DEVVAQKEKAIQDKSERIVSLQKELSS 98 (455)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~eI~s 98 (455)
+....+.....++.+.-|-++.+.|+.
T Consensus 543 D~~~~~~~~~~n~le~~i~~~~~~l~~ 569 (675)
T 3d2f_A 543 DKLVAETEDRKNTLEEYIYTLRGKLEE 569 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666667666643
No 309
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.18 E-value=1.3e+02 Score=20.58 Aligned_cols=12 Identities=25% Similarity=0.119 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 012833 124 QIDNLKKESEKQ 135 (455)
Q Consensus 124 qIe~LkkeLE~~ 135 (455)
||..++..++.+
T Consensus 16 Qi~~l~~kl~~L 27 (38)
T 2l5g_A 16 QILKLEEKLLAL 27 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 310
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=23.11 E-value=1.6e+02 Score=21.68 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012833 50 LKSKIRSLESHIDEKTQEL 68 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI 68 (455)
++..|..+++++..+..++
T Consensus 5 ~q~~i~~le~el~~~r~e~ 23 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEV 23 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 311
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=23.08 E-value=2.2e+02 Score=23.21 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESEK 134 (455)
Q Consensus 121 Le~qIe~LkkeLE~ 134 (455)
.+++|.+|+.+|+.
T Consensus 73 YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 73 YEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH
Confidence 44566666665554
No 312
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.99 E-value=2.3e+02 Score=20.92 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 155 DLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (455)
Q Consensus 155 EleskveeLek~~eEqekkI~elE~~Lq~l 184 (455)
+++.+++.|+.....+...+..+...+..+
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333
No 313
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.47 E-value=2.6e+02 Score=22.16 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEa 144 (455)
.|-+=|..|+.+...+..+++.+..+...|..
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333333
No 314
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=22.34 E-value=2.4e+02 Score=28.30 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 171 KSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 171 ekkI~elE~~Lq~lEeeL~ 189 (455)
+..+..++..+..++.++.
T Consensus 75 ~~e~~~l~~~~~~le~~l~ 93 (354)
T 3d5a_X 75 KAEREALLARKEALEKELE 93 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 315
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=22.29 E-value=3.5e+02 Score=22.71 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (455)
Q Consensus 54 I~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~s 98 (455)
+....+-+++.+.++.-..+-|..+.+.+-..+-.|.+|+..+.-
T Consensus 62 LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltf 106 (142)
T 1pl5_A 62 LSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTF 106 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhHHHHHhhheeeeeeccchhh
Confidence 333444445555555555555555555555555555555555543
No 316
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.15 E-value=1.4e+02 Score=19.99 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 012833 150 EKKISDLSAKLEKL 163 (455)
Q Consensus 150 Ekkl~EleskveeL 163 (455)
|.+++++-++...+
T Consensus 7 edKvEel~~~~~~l 20 (34)
T 2r2v_A 7 ADKLEEVASKLYHN 20 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 33333333333333
No 317
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.61 E-value=1.8e+02 Score=22.67 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEa 144 (455)
+|-+=|..|+.+...+..+++.+..+...|..
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333
No 318
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=21.52 E-value=4.7e+02 Score=23.91 Aligned_cols=6 Identities=17% Similarity=0.158 Sum_probs=2.7
Q ss_pred cccCCh
Q 012833 207 SAWLPP 212 (455)
Q Consensus 207 Gawl~P 212 (455)
|.|+.|
T Consensus 149 G~~v~~ 154 (277)
T 2f1m_A 149 GALVQN 154 (277)
T ss_dssp TCEECT
T ss_pred CCEEcC
Confidence 444444
No 319
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=21.47 E-value=1.6e+02 Score=21.71 Aligned_cols=13 Identities=46% Similarity=0.498 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 012833 162 KLQKINDEQKSKI 174 (455)
Q Consensus 162 eLek~~eEqekkI 174 (455)
+|.+.-++++++|
T Consensus 29 elkkkweelkkki 41 (67)
T 1lq7_A 29 ELKKKWEELKKKI 41 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 320
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=21.44 E-value=4.5e+02 Score=24.40 Aligned_cols=30 Identities=7% Similarity=0.057 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 155 DLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (455)
Q Consensus 155 EleskveeLek~~eEqekkI~elE~~Lq~l 184 (455)
++...+..++.........+-.+-+.++.+
T Consensus 192 ~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~l 221 (290)
T 3i2w_A 192 KYEQAIAEITKYNSVYIEDMTSVFEKCQTF 221 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333333333333
No 321
>2ynz_A General control protein GCN4, putative inner MEMB protein; membrane protein, DALL domain, DALL2, trimeric autotransport adhesin, TAA; 1.40A {Saccharomyces cerevisiae} PDB: 1uo2_A 1gcl_A 2ccn_A 1uo0_A 1unz_A 1uny_A 2bni_A* 1u9h_A*
Probab=21.35 E-value=2.6e+02 Score=24.88 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 56 ~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
+++.+|+++-+.|--.+.+|..+-.++-..+..|......|..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~~GSQL~~tn~~Va~nt~~ia~v 46 (154)
T 2ynz_A 3 QIEDKIEEILSKIYHIENEIARIKKLIYETNQKVDQNTSAIADI 46 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHhccchhhh
Confidence 34455555544444444444444444444444444444444333
No 322
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=21.24 E-value=3.1e+02 Score=28.98 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012833 73 EVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (455)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK 102 (455)
....++....++.+.-|.++.+.++++..+
T Consensus 527 ~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~ 556 (605)
T 2kho_A 527 RKFDELVQTRNQGDHLLHSTRKQVEEAGDK 556 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 334444555556666666666666554433
No 323
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.21 E-value=3e+02 Score=27.41 Aligned_cols=31 Identities=39% Similarity=0.376 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 125 IDNLKKESEKQQKEKEALEARAIEAEKKISD 155 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEae~~elEkkl~E 155 (455)
|..+.++++..+.+.++++.++...|+..++
T Consensus 5 ~~~~~~e~~~~~~~~~~vq~kA~~~E~~Yn~ 35 (333)
T 4etp_B 5 IAALEKEIAALEKEIAALEKEISKQEKFYND 35 (333)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556666666555554
No 324
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.89 E-value=5.1e+02 Score=24.32 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (455)
Q Consensus 148 elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEee 187 (455)
.+.+++..++.++++.+.+.+.+.+.+.+-.+++..+.+.
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444433333
No 325
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=20.89 E-value=1.9e+02 Score=29.22 Aligned_cols=11 Identities=18% Similarity=0.160 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 012833 175 RKTERALKVAE 185 (455)
Q Consensus 175 ~elE~~Lq~lE 185 (455)
..++..+..++
T Consensus 97 ~~l~~~l~~le 107 (371)
T 1zbt_A 97 KNSKVAKEEYE 107 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 326
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=20.81 E-value=1.1e+02 Score=20.54 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 012833 151 KKISDLSAK 159 (455)
Q Consensus 151 kkl~Elesk 159 (455)
.+++++-++
T Consensus 8 dKvEeLl~~ 16 (34)
T 2bni_A 8 DKLEEILSK 16 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 333333333
No 327
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=20.74 E-value=5.9e+02 Score=24.73 Aligned_cols=11 Identities=18% Similarity=0.214 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 012833 86 SERIVSLQKEL 96 (455)
Q Consensus 86 e~~I~eLq~eI 96 (455)
+..|.-+..++
T Consensus 59 ~~~~~~f~~q~ 69 (302)
T 2y3a_B 59 NETIKIFEEQG 69 (302)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 328
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=20.68 E-value=2.8e+02 Score=21.04 Aligned_cols=37 Identities=14% Similarity=0.339 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (455)
Q Consensus 151 kkl~EleskveeLek~~eEqekkI~elE~~Lq~lEee 187 (455)
....+.......+...+++....+...-...+..+.+
T Consensus 56 ~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~ 92 (99)
T 3zbh_A 56 QQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQ 92 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 329
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=20.59 E-value=3e+02 Score=21.36 Aligned_cols=28 Identities=4% Similarity=0.010 Sum_probs=13.0
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 68 LKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (455)
Q Consensus 68 I~~k~~eIk~~e~~I~e~e~~I~eLq~e 95 (455)
|+++..+|+.+...-.+.-..|.+|.+.
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEd 32 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAED 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 3333444444444444444555555554
No 330
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.58 E-value=2.6e+02 Score=20.54 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 167 NDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 167 ~eEqekkI~elE~~Lq~lE 185 (455)
++++...|+.+......+.
T Consensus 32 l~~Qn~lLd~l~~~~d~~~ 50 (65)
T 1gl2_D 32 LDEQNEIIDDLANLVENTD 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 331
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.29 E-value=1.3e+02 Score=25.86 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=1.5
Q ss_pred HHHHHHHHHHHH
Q 012833 122 EKQIDNLKKESE 133 (455)
Q Consensus 122 e~qIe~LkkeLE 133 (455)
..+++.|+.+++
T Consensus 5 ~~~~~~l~~~~~ 16 (182)
T 3kqg_A 5 NAQIPELKSDLE 16 (182)
T ss_dssp --------CHHH
T ss_pred hhhHHHHHHHHH
Confidence 344444444333
No 332
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=20.28 E-value=4.1e+02 Score=22.77 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 58 eski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~ 97 (455)
.+-+++.+.++.-..+-|..+.+.+-..+-.|.+|+..+.
T Consensus 90 ~~aldekekqlavaneiirslsdevmrneiritslqgdlt 129 (166)
T 1nyh_A 90 ASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLT 129 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhheeeeeeccchh
Confidence 3344444444444444444455555555555555555443
No 333
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=20.27 E-value=3.3e+02 Score=21.66 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=15.1
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 67 ELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (455)
Q Consensus 67 eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI 96 (455)
+|+++..+|+.+...-.+.-..|.+|.+.|
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdL 45 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGL 45 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444455555555555555666666654
No 334
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=20.25 E-value=3e+02 Score=21.24 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~ 87 (455)
|+.+...|..|..-=..+..+|+.-..-|..++..+.....
T Consensus 21 Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~ 61 (82)
T 2nps_D 21 LELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQS 61 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444444444444433333333333333333
No 335
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.22 E-value=3.4e+02 Score=21.78 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQ 136 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~ 136 (455)
..+..+...+.+++.|+.++..++
T Consensus 60 ~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 60 PVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555555555555543
No 336
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.20 E-value=1.1e+02 Score=25.28 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHID 62 (455)
Q Consensus 47 L~~lr~kI~~Leski~ 62 (455)
+..++.++..|+.+-.
T Consensus 8 ~~~Lk~El~~L~~~E~ 23 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQ 23 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 337
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=20.17 E-value=1.4e+02 Score=23.33 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 012833 87 ERIVSLQKELSSLQ 100 (455)
Q Consensus 87 ~~I~eLq~eI~sLQ 100 (455)
..|.+++.+|+.|+
T Consensus 29 ~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 29 GNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHH
Confidence 33444444444443
No 338
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=20.09 E-value=5.1e+02 Score=23.81 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELK 69 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~ 69 (455)
.-+.....+|..|+.+-.++=.+|.
T Consensus 33 k~~~~~qkkL~~LEkk~q~LY~qI~ 57 (199)
T 2ap3_A 33 EPIKTVGKKIAELDEKKKKLTEDVN 57 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777777777777666665
Done!