Query 012833
Match_columns 455
No_of_seqs 246 out of 311
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 17:07:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012833.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012833hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 98.6 3.9E-08 2.8E-12 85.6 7.5 93 265-361 38-130 (144)
2 d1gs9a_ a.24.1.1 (A:) Apolipop 98.6 1.8E-08 1.3E-12 87.8 5.1 89 258-350 53-141 (144)
3 d2ap3a1 a.24.27.1 (A:12-196) H 95.6 0.39 2.9E-05 38.5 16.8 47 145-191 131-177 (185)
4 d2ap3a1 a.24.27.1 (A:12-196) H 94.3 0.97 7E-05 36.0 15.7 19 47-65 24-42 (185)
5 d1seta1 a.2.7.1 (A:1-110) Sery 92.5 0.97 7.1E-05 35.7 12.2 32 73-104 28-59 (110)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 92.2 0.99 7.2E-05 36.6 12.2 35 55-89 4-38 (133)
7 d1fxka_ a.2.5.1 (A:) Prefoldin 91.2 1.5 0.00011 34.5 11.9 9 117-125 73-81 (107)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 88.7 4.8 0.00035 32.2 14.2 23 77-99 5-27 (133)
9 d1gqea_ e.38.1.1 (A:) Polypept 85.9 3 0.00022 39.9 12.1 11 181-191 100-110 (362)
10 d1qvra2 c.37.1.20 (A:149-535) 70.5 20 0.0015 33.9 12.6 9 207-215 366-374 (387)
11 d1ivsa1 a.2.7.3 (A:797-862) Va 70.2 5.5 0.0004 28.4 6.4 23 111-133 41-63 (66)
12 d1vcsa1 a.47.2.1 (A:8-96) Vesi 70.1 13 0.00098 28.1 9.0 59 68-133 26-84 (89)
13 d1lrza1 a.2.7.4 (A:245-309) Me 66.8 19 0.0014 25.8 9.5 24 73-96 3-26 (65)
14 d1ivsa1 a.2.7.3 (A:797-862) Va 62.8 8.9 0.00065 27.2 6.2 25 46-70 5-29 (66)
15 d1qvra2 c.37.1.20 (A:149-535) 57.0 35 0.0026 32.1 11.4 12 88-99 261-272 (387)
16 d1eq1a_ a.63.1.1 (A:) Apolipop 49.5 59 0.0043 27.1 10.3 83 42-128 8-93 (166)
17 d1f5na1 a.114.1.1 (A:284-583) 48.2 79 0.0057 27.0 17.1 10 182-191 287-296 (300)
18 d1vcsa1 a.47.2.1 (A:8-96) Vesi 46.3 46 0.0034 24.8 8.3 9 91-99 13-21 (89)
19 d1nkpa_ a.38.1.1 (A:) Myc prot 40.9 38 0.0028 24.8 6.9 30 111-140 47-76 (88)
20 d1s5qb_ a.59.1.1 (B:) Sin3A {M 38.1 14 0.001 27.8 3.9 40 339-384 16-76 (89)
21 d1jb0m_ f.23.19.1 (M:) Subunit 34.4 23 0.0017 21.5 3.5 25 405-429 6-30 (31)
22 d1siga_ a.177.1.1 (A:) Sigma70 30.9 1.6E+02 0.012 25.6 11.5 28 227-254 280-307 (334)
23 d2f05a1 a.59.1.1 (A:1-85) Sin3 29.3 29 0.0021 25.6 4.4 40 339-384 13-70 (85)
24 d1owaa_ a.7.1.1 (A:) Spectrin 28.9 1.2E+02 0.0085 23.3 14.8 55 42-97 23-77 (156)
25 d1owaa_ a.7.1.1 (A:) Spectrin 28.1 1.2E+02 0.0088 23.2 9.5 52 46-98 20-71 (156)
26 d1x4ta1 a.2.15.1 (A:7-86) Pre- 27.5 1E+02 0.0076 22.6 7.2 19 86-104 25-43 (80)
27 d2f23a1 a.2.1.1 (A:3-77) GreA 24.7 1.2E+02 0.0085 21.8 7.9 53 81-133 16-68 (75)
28 d1vp7a_ a.7.13.1 (A:) Exonucle 22.0 97 0.007 21.9 5.9 27 73-99 10-36 (68)
29 d2azeb1 e.63.1.2 (B:201-301) T 21.5 65 0.0047 24.6 5.2 8 50-57 6-13 (101)
30 d1wu9a1 a.245.1.1 (A:191-249) 21.0 1.2E+02 0.0089 20.9 6.1 37 118-154 3-39 (59)
31 d1grja1 a.2.1.1 (A:2-79) GreA 20.2 1.5E+02 0.011 21.4 8.9 45 89-133 25-69 (78)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=98.58 E-value=3.9e-08 Score=85.65 Aligned_cols=93 Identities=12% Similarity=0.157 Sum_probs=57.9
Q ss_pred hhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHHHHHHhhccchhHhHH
Q 012833 265 KWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVR 344 (455)
Q Consensus 265 k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~~qa~~~~~p~~~~~~ 344 (455)
++.|.+.+ ....+.+|++.++.++.|+++.+++.+++.++.+++.+.|++++++..+.||+++++....|+++.++
T Consensus 38 el~~~l~e----~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r 113 (144)
T d1gs9a_ 38 ELRALMDE----TMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELR 113 (144)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 34444556666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhhcchHHHHHHHHHHH
Q 012833 345 VALKPYTKKVVRAYGKF 361 (455)
Q Consensus 345 ~~~~P~~~~v~~~~~~~ 361 (455)
..+.||++.++..+.+.
T Consensus 114 ~~l~p~~eel~~~l~~~ 130 (144)
T d1gs9a_ 114 VRLASHLRKLRKRLLRD 130 (144)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665554444
No 2
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=98.57 E-value=1.8e-08 Score=87.81 Aligned_cols=89 Identities=11% Similarity=0.123 Sum_probs=56.1
Q ss_pred hHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhhHHHHHHhhcc
Q 012833 258 HVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAK 337 (455)
Q Consensus 258 ~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~py~~qa~~~~~ 337 (455)
+++.++.++.|++.+ ++..+.++++.++.++.|..+.+|+.+.||+..+++.+.|++.+++..+.||++..++-..
T Consensus 53 ~~~~l~~~l~p~~~e----~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~ 128 (144)
T d1gs9a_ 53 YKSELEEQLTPVAEE----TRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLL 128 (144)
T ss_dssp HHHHHTTSCCCCCSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666655 5555556666666666666666666666666666666666666666666666666666666
Q ss_pred chhHhHHHhhcch
Q 012833 338 PHVDNVRVALKPY 350 (455)
Q Consensus 338 p~~~~~~~~~~P~ 350 (455)
++++.++..+.||
T Consensus 129 ~~~eel~~kL~py 141 (144)
T d1gs9a_ 129 RDADDLQKRLAVY 141 (144)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCc
Confidence 6666666666665
No 3
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=95.61 E-value=0.39 Score=38.54 Aligned_cols=47 Identities=6% Similarity=0.025 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 145 RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (455)
Q Consensus 145 e~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ka 191 (455)
....+...+......+..+...+..+...+.++...+..+...+..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (185)
T d2ap3a1 131 SEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKV 177 (185)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444444333333
No 4
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=94.32 E-value=0.97 Score=36.04 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKT 65 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele 65 (455)
+.....++..++..+..+.
T Consensus 24 ~~~~~~k~~~~e~~~~~~~ 42 (185)
T d2ap3a1 24 IKTVGKKIAELDEKKKKLT 42 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=92.45 E-value=0.97 Score=35.74 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 73 EVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104 (455)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s 104 (455)
..+-+++....+...++.+|+++...+.+.+.
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~ 59 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666665555554443
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=92.15 E-value=0.99 Score=36.64 Aligned_cols=35 Identities=3% Similarity=0.004 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 012833 55 RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERI 89 (455)
Q Consensus 55 ~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I 89 (455)
.+|..+++.++++++.+.+.+..++..+.+.+..+
T Consensus 4 ~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~ 38 (133)
T d1fxkc_ 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILE 38 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 7
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=91.19 E-value=1.5 Score=34.50 Aligned_cols=9 Identities=11% Similarity=0.243 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 012833 117 RADELEKQI 125 (455)
Q Consensus 117 ~i~eLe~qI 125 (455)
++..++.+|
T Consensus 73 ~~e~l~~~i 81 (107)
T d1fxka_ 73 KLETLQLRE 81 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=88.72 E-value=4.8 Score=32.20 Aligned_cols=23 Identities=4% Similarity=0.151 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 77 QKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 77 ~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
++...++..+..|..++++|..+
T Consensus 5 eL~~~~~~l~~~l~~l~~~i~~l 27 (133)
T d1fxkc_ 5 EIVAQLNIYQSQVELIQQQMEAV 27 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 9
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=85.89 E-value=3 Score=39.86 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 012833 181 LKVAEEEMMRA 191 (455)
Q Consensus 181 Lq~lEeeL~ka 191 (455)
+..++..+.++
T Consensus 100 l~~l~~~l~~l 110 (362)
T d1gqea_ 100 LDALEEKLAQL 110 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhhhhHH
Confidence 33333333333
No 10
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=70.46 E-value=20 Score=33.93 Aligned_cols=9 Identities=0% Similarity=0.032 Sum_probs=4.4
Q ss_pred cccCChHHH
Q 012833 207 SAWLPPWLA 215 (455)
Q Consensus 207 Gawl~Pw~~ 215 (455)
..++.|+..
T Consensus 366 ~~lvr~~Vt 374 (387)
T d1qvra2 366 ARFVRLEVT 374 (387)
T ss_dssp CSSCCSEEC
T ss_pred CCCCcCccC
Confidence 345555443
No 11
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=70.21 E-value=5.5 Score=28.38 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE 133 (455)
+.....++.+++.++..++..+.
T Consensus 41 v~~~k~kl~~~~~~~~~l~~~l~ 63 (66)
T d1ivsa1 41 VEAEEARLKENLEQAERIREALS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554443
No 12
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=70.15 E-value=13 Score=28.06 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=41.4
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 68 I~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE 133 (455)
-+++...|.+++..+.+....|..|.-++.++.. ......+.++.....+++.|++++.
T Consensus 26 geerk~~l~~ie~~leEA~ell~qMelEvr~~p~-------s~R~~~~~klr~Yk~dl~~lk~elk 84 (89)
T d1vcsa1 26 PDEKKQMVANVEKQLEEARELLEQMDLEVREIPP-------QSRGMYSNRMRSYKQEMGKLETDFK 84 (89)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-------TTHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888888776642 2334556666666666666666554
No 13
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=66.80 E-value=19 Score=25.77 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 73 EVVAQKEKAIQDKSERIVSLQKEL 96 (455)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~eI 96 (455)
++|..++.....++..|..+...|
T Consensus 3 eYl~~L~~~~~~L~~~i~k~~~~l 26 (65)
T d1lrza1 3 EYIKELNEERDILNKDLNKALKDI 26 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 14
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=62.75 E-value=8.9 Score=27.19 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 012833 46 ELDQLKSKIRSLESHIDEKTQELKG 70 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~eI~~ 70 (455)
++..+..++..++..+..++..+..
T Consensus 5 E~~RL~K~l~kl~~~i~~~~~kL~N 29 (66)
T d1ivsa1 5 WRRRQEKRLKELLALAERSQRKLAS 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3333444444444444444444333
No 15
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=57.02 E-value=35 Score=32.09 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 012833 88 RIVSLQKELSSL 99 (455)
Q Consensus 88 ~I~eLq~eI~sL 99 (455)
.|..++.+...+
T Consensus 261 ~I~qLe~E~~aL 272 (387)
T d1qvra2 261 KKLQLEIEREAL 272 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 16
>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}
Probab=49.50 E-value=59 Score=27.12 Aligned_cols=83 Identities=12% Similarity=0.174 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH--hhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQ--ELKGKDEVVAQK-EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~--eI~~k~~eIk~~-e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i 118 (455)
+++.-.+-+..-...+.++.+.+.. ...+....+++. ....++.+..+.++++.+. .........+..++.++
T Consensus 8 ~~~~~~~~a~e~~~t~~eq~~~~~n~knt~~~~~a~ke~a~~v~e~~~~~~~~l~~~~~----Ea~~~a~dav~qa~~nl 83 (166)
T d1eq1a_ 8 AFEEMEKHAKEFQKTFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGAIS----DANGKAKEALEQARQNV 83 (166)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT----TCSSTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555541 122222333333 2233333333444444333 22222344555555554
Q ss_pred HHHHHHHHHH
Q 012833 119 DELEKQIDNL 128 (455)
Q Consensus 119 ~eLe~qIe~L 128 (455)
..+-.++.++
T Consensus 84 e~~Aeelrk~ 93 (166)
T d1eq1a_ 84 EKTAEELRKA 93 (166)
T ss_dssp HHHHHGGGGC
T ss_pred HHHHHHHHHh
Confidence 4444444433
No 17
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.17 E-value=79 Score=26.99 Aligned_cols=10 Identities=10% Similarity=0.361 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 012833 182 KVAEEEMMRA 191 (455)
Q Consensus 182 q~lEeeL~ka 191 (455)
...+.++..+
T Consensus 287 ~~l~~ei~~L 296 (300)
T d1f5na1 287 RIMKNEIQDL 296 (300)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 18
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.34 E-value=46 Score=24.81 Aligned_cols=9 Identities=0% Similarity=0.364 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 012833 91 SLQKELSSL 99 (455)
Q Consensus 91 eLq~eI~sL 99 (455)
++..+|..+
T Consensus 13 ~i~~kl~~i 21 (89)
T d1vcsa1 13 EITSKIARV 21 (89)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHHH
Confidence 334444444
No 19
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.90 E-value=38 Score=24.83 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
+..|-+-|..|..+++.+..+++.+..+..
T Consensus 47 L~~A~~yI~~L~~~~~~l~~~~~~l~~~~~ 76 (88)
T d1nkpa_ 47 LKKATAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555544444444433333
No 20
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.05 E-value=14 Score=27.75 Aligned_cols=40 Identities=30% Similarity=0.565 Sum_probs=32.5
Q ss_pred hhHhHHHhh--cchHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHhcc
Q 012833 339 HVDNVRVAL--KPYTKKVVRAYGKFLKSATTYHH-------------------QVQASVQEMLKKHE 384 (455)
Q Consensus 339 ~~~~~~~~~--~P~~~~v~~~~~~~~~~a~~~h~-------------------q~q~~~~~~l~~~e 384 (455)
|+++|++.. .| .+|..|++--..|++ .|..-|+++++.|+
T Consensus 16 yl~kVK~~f~d~p------~~Y~~FL~il~~f~~~~~~~~~~~~~~~~~~~~~~v~~rV~~Lf~~hp 76 (89)
T d1s5qb_ 16 YVNKIKNRFQGQP------DIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQE 76 (89)
T ss_dssp HHHHHHHHTTTCH------HHHHHHHHHHHHHHHHHHHHHHSCSCCCCSCCHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHccCh------HHHHHHHHHHHHHHHhhhccccccccccccccHHHHHHHHHHHHccCH
Confidence 666777776 44 479999999999986 58899999999887
No 21
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=34.45 E-value=23 Score=21.45 Aligned_cols=25 Identities=24% Similarity=0.626 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 405 IQLLQASALLVLPVIILFRIGSAIF 429 (455)
Q Consensus 405 ~~~~~asal~~~p~~~~~~~~~~~~ 429 (455)
-|+|.|-+.-.+|-+++||+-.+++
T Consensus 6 tqv~valvial~pg~lafrlately 30 (31)
T d1jb0m_ 6 TQVYVALVIALLPAVLAFRLSTELY 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677788888899999999987764
No 22
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Probab=30.90 E-value=1.6e+02 Score=25.64 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=16.1
Q ss_pred hhhhhcCcchHHHHHHHHHHHHHHcCcc
Q 012833 227 THWNAHGKPAMDVAIQKALEKKAQAGKW 254 (455)
Q Consensus 227 ~~w~~~g~P~~~~~~~k~~~~~~~~~~w 254 (455)
.+....|-|..+-++.=.-=+|....+|
T Consensus 280 ~~~~~~~~~~~dl~~~~~~~l~~~~~~~ 307 (334)
T d1siga_ 280 KKYTNRGLQFLDLIQEGNIGLMKAVDKF 307 (334)
T ss_dssp TTSTTSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HhccCCCCCHHHHHHhhHHHHHHHHHhc
Confidence 3445568777776665555555544444
No 23
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.33 E-value=29 Score=25.55 Aligned_cols=40 Identities=25% Similarity=0.548 Sum_probs=31.8
Q ss_pred hhHhHHHhh--cchHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHhcc
Q 012833 339 HVDNVRVAL--KPYTKKVVRAYGKFLKSATTYHHQ----------------VQASVQEMLKKHE 384 (455)
Q Consensus 339 ~~~~~~~~~--~P~~~~v~~~~~~~~~~a~~~h~q----------------~q~~~~~~l~~~e 384 (455)
|+++|+... .| ..|..|++-...|++. |..-|.++++.|+
T Consensus 13 yl~kVK~rf~~~p------~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~hp 70 (85)
T d2f05a1 13 YVNKIKTRFLDHP------EIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQE 70 (85)
T ss_dssp HHHHHHHHTTTCH------HHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHccCH------HHHHHHHHHHHHHHHhhccccccccccCCHHHHHHHHHHHHccCH
Confidence 566666665 34 4799999999999874 8899999999997
No 24
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.85 E-value=1.2e+02 Score=23.28 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~ 97 (455)
.+...++.+...-++|.....+....+++.. .+........+...-|.+....+.
T Consensus 23 ~i~~~~~~l~~rw~~L~~~~~~R~~~Le~~~-~~~~F~~~~~~l~~Wl~e~e~~~~ 77 (156)
T d1owaa_ 23 EIQERRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIMEKVNILT 77 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSCSCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3667777888888888888888887777643 345555555555555555444443
No 25
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.10 E-value=1.2e+02 Score=23.20 Aligned_cols=52 Identities=6% Similarity=0.083 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~s 98 (455)
.-+.++.++..+...-+.+.....++...+.+.- .+.+......++..=|..
T Consensus 20 ~~~~i~~~~~~l~~rw~~L~~~~~~R~~~Le~~~-~~~~F~~~~~~l~~Wl~e 71 (156)
T d1owaa_ 20 TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIME 71 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSCH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4566788888888888887777777776665543 345555666666665543
No 26
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.52 E-value=1e+02 Score=22.63 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 012833 86 SERIVSLQKELSSLQKKET 104 (455)
Q Consensus 86 e~~I~eLq~eI~sLQkK~s 104 (455)
..-|.+...+++.+|+-+.
T Consensus 25 ~~iikEI~~kvs~Iqn~~L 43 (80)
T d1x4ta1 25 RQIIGEISKKVAQIQNAGL 43 (80)
T ss_dssp HHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 3445556666666665443
No 27
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=24.65 E-value=1.2e+02 Score=21.85 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 81 AIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 81 ~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE 133 (455)
.+..+.....+....|......+..--.-+...|.++...++.+|..|+..+.
T Consensus 16 EL~~l~~~r~ei~~~I~eAr~~GDl~ENaeY~aAke~q~~~e~rI~eLe~~L~ 68 (75)
T d2f23a1 16 QLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILS 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444554444444332233666777777777777777776654
No 28
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=22.04 E-value=97 Score=21.87 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 73 EVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
+-+++++..+++.+..=-.|..-|...
T Consensus 10 e~l~~LE~IV~~LE~g~l~Leesl~~y 36 (68)
T d1vp7a_ 10 TALAELESLVSAMENGTLPLEQSLSAY 36 (68)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 334444444444444333444444444
No 29
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.46 E-value=65 Score=24.64 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 012833 50 LKSKIRSL 57 (455)
Q Consensus 50 lr~kI~~L 57 (455)
|++++..|
T Consensus 6 L~~El~~L 13 (101)
T d2azeb1 6 LTQDLRQL 13 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 30
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.05 E-value=1.2e+02 Score=20.90 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKIS 154 (455)
Q Consensus 118 i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~ 154 (455)
+.+|..++..|+-.++.++++..=.=.++.++|--++
T Consensus 3 ~~~L~~ei~elk~~v~~lEkERdFYF~KLRdIEilcQ 39 (59)
T d1wu9a1 3 AAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQ 39 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444433444444444443
No 31
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.19 E-value=1.5e+02 Score=21.40 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 89 IVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 89 I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE 133 (455)
.-+....|......+..--..+...|+++...++.+|..|+..+.
T Consensus 25 rpei~~~I~~Ar~~GDlsENaeY~aAKe~q~~~e~RI~eLe~~L~ 69 (78)
T d1grja1 25 RPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLS 69 (78)
T ss_dssp HHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444454444444433233666778888888888887777664
Done!