BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012834
         (455 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LPI|A Chain A, Nmr Structure Of A Monomeric Mutant (A72r) Of Major
           Ampullate Spidroin 1 N-Terminal Domain
 pdb|4FBS|A Chain A, Structure Of Monomeric Nt From Euprosthenops Australis
           Major Ampullate Spidroin 1 (Masp1)
          Length = 137

 Score = 28.9 bits (63), Expect = 6.7,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 287 SNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQ---SGGKYVSVHLRFETDMVAF 343
           S +QGL  +  F A +  + +  +A+ MV  +   ++Q   S  K  ++++RF + M   
Sbjct: 22  SFMQGLSSMPGFTASQLDD-MSTIAQSMVQSIQSLAAQGRTSPNKLQALNMRFASSMAEI 80

Query: 344 SCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRV 384
           +  E  GG    +   IA   S     +  G V +P  N +
Sbjct: 81  AASEEGGGSLSTKTSSIASAMS-NAFLQTTGVVNQPFINEI 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,871,523
Number of Sequences: 62578
Number of extensions: 458088
Number of successful extensions: 812
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 1
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)