Query 012834
Match_columns 455
No_of_seqs 187 out of 379
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 1.3E-43 2.7E-48 348.5 4.5 250 164-439 6-293 (351)
2 KOG3849 GDP-fucose protein O-f 95.6 0.038 8.3E-07 56.4 7.5 57 155-213 27-89 (386)
3 PF00799 Gemini_AL1: Geminivir 46.4 19 0.0004 32.3 2.8 27 387-414 14-40 (114)
4 PLN02232 ubiquinone biosynthes 43.1 45 0.00098 30.3 4.9 99 295-416 48-152 (160)
5 PF10892 DUF2688: Protein of u 31.1 34 0.00074 27.7 1.8 16 386-402 42-57 (60)
6 PF04561 RNA_pol_Rpb2_2: RNA p 28.1 25 0.00055 31.7 0.7 18 395-412 54-71 (190)
7 PF03786 UxuA: D-mannonate deh 24.6 40 0.00086 35.8 1.5 107 252-369 181-311 (351)
8 smart00874 B5 tRNA synthetase 22.9 53 0.0012 25.7 1.6 24 383-407 13-36 (71)
9 PF10365 DUF2436: Domain of un 22.4 25 0.00055 33.2 -0.4 25 187-214 26-50 (161)
10 PRK15451 tRNA cmo(5)U34 methyl 21.7 2E+02 0.0043 27.9 5.6 27 385-411 204-230 (247)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=1.3e-43 Score=348.54 Aligned_cols=250 Identities=32% Similarity=0.506 Sum_probs=169.2
Q ss_pred ecCChhhHHHHHHHHHHHHHHhcCcEeecccccccccCCCCC-----CCCCCChHHHHHhccCCcEEeccCchhHHhhhc
Q 012834 164 ANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSN-----FGDIFDEDFFMHALRSNVNVVKELPEDILQQFD 238 (455)
Q Consensus 164 ~nGGLNQqR~~IcDAVaVARiLNATLVlP~l~~~S~W~D~S~-----F~DIFDvdhFI~sL~~dVrIVk~LP~~~~~~~~ 238 (455)
+.||+||||.++++||++|++||+|||||.+...+.|+|.++ |+|+||+++|+++++++|.+.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 899999999999999999999999999999999999999988 999999999999999999999999876644221
Q ss_pred ccc-------------------------cceeeccccC-CCChhhhhhhhhhhhhhc------ceEEEccCCcccccC-C
Q 012834 239 HNI-------------------------SSIVNLRVKG-WSSPTHYLQKVLPKLQHL------GAVRIAPFSNRLAQG-V 285 (455)
Q Consensus 239 ~~~-------------------------~~i~~~~v~~-~s~~~yY~~~VLP~L~k~------~VI~l~~f~~RLa~~-l 285 (455)
... .....+.... |+.+.+|.++++|.+.++ +++.|.++..++.++ .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 100 0112222333 788999999999999887 999999999999876 7
Q ss_pred CCcchhhcccccccccccchhHHHHHHHHHHHHhhcccCCCCceEEEeecchhhhhhhhcccCCCChhHHHHHHHHHHhh
Q 012834 286 PSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERS 365 (455)
Q Consensus 286 P~~iQrLRCrvnf~ALrF~p~I~~lg~~LV~Rmr~~s~~s~g~yIALHLRfE~DMlAfSgC~~~gg~~E~~eL~~~R~~~ 365 (455)
+.++|| +|+|+++|+++|++++++|+. .+++|||+|||+|+|| +++|.+++ ++.+|..+|..
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~----~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~- 227 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLA----GGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW- 227 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH--------SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH-
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhc----ccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh-
Confidence 788887 999999999999999999992 4689999999999999 99999955 67788777764
Q ss_pred cccccccCCcccCCcccccCCCCCCChhHHHHHHHHhCCCCcceeeeecccccchHHHHHHHHHhhhhhhhhhh
Q 012834 366 WRGKFRKRGRVIRPGANRVDGKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLLKNKF 439 (455)
Q Consensus 366 wk~k~~k~~~~i~~~~~R~~G~CPLTPeEvgl~LraLGf~~~T~iY~a~g~i~~~~~~~~~l~~~~~p~l~n~~ 439 (455)
.. ..+++.+.+..+.||++|+|++.+++++|+.+.|.||||++++|++.+.|.+|++ .||.+..|.
T Consensus 228 -~~------~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~-~~~~~~~~~ 293 (351)
T PF10250_consen 228 -GK------KSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKN-MFPNVVTKD 293 (351)
T ss_dssp --G------GGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HH-HHHHHHGGG
T ss_pred -cc------ccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHH-HhhhhEecc
Confidence 11 1567788999999999999999999999999999999999999999999999999 999877443
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.038 Score=56.40 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=44.5
Q ss_pred CCCceEEEE-ecCChhhHHHHHHHHHHHHHHhcCcEeecccccccccCCC-----CCCCCCCChH
Q 012834 155 KSNGFLIIE-ANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDS-----SNFGDIFDED 213 (455)
Q Consensus 155 ~snGYL~V~-~nGGLNQqR~~IcDAVaVARiLNATLVlP~l~~~S~W~D~-----S~F~DIFDvd 213 (455)
..||||+.- |-|-..+|-...--..|.|+.||-|||+|..-. |-+-+ -.|+-.|.++
T Consensus 27 DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiE--y~~pe~~n~~vpf~~yF~ve 89 (386)
T KOG3849|consen 27 DPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIE--YKHPETKNLMVPFEFYFQVE 89 (386)
T ss_pred CCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchh--ccCCcccccccchhheeecc
Confidence 579998775 999999999999999999999999999997543 22222 2377777764
No 3
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=46.41 E-value=19 Score=32.34 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHhCCCCcceeeeec
Q 012834 387 KCPLTPLEVLNCIELSALPSINLLFNKF 414 (455)
Q Consensus 387 ~CPLTPeEvgl~LraLGf~~~T~iY~a~ 414 (455)
+|||||||+...|++|--+. ...||..
T Consensus 14 qC~l~ke~~l~~L~~l~~~~-~~~yI~v 40 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTPS-NKKYIRV 40 (114)
T ss_dssp T----HHHHHHHHHH---SS--EEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcc-CceEEEe
Confidence 79999999999999998654 6667644
No 4
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=43.12 E-value=45 Score=30.29 Aligned_cols=99 Identities=9% Similarity=-0.194 Sum_probs=54.7
Q ss_pred cccccccccchhHHHHHHHHHHHHhhcccCCCCceEEEeecchhhhhhhh----cccCCCChhHHH--HHHHHHHhhccc
Q 012834 295 LANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFS----CCEYDGGEEEKR--EMDIARERSWRG 368 (455)
Q Consensus 295 rvnf~ALrF~p~I~~lg~~LV~Rmr~~s~~s~g~yIALHLRfE~DMlAfS----gC~~~gg~~E~~--eL~~~R~~~wk~ 368 (455)
-++..+|++.++..+.-+.+.+.|+ .+|+++-++.--+...+... -|...+...+.- .-.++++- |
T Consensus 48 v~~~~~l~~~~d~~~~l~ei~rvLk-----pGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl-~-- 119 (160)
T PLN02232 48 VTMGYGLRNVVDRLRAMKEMYRVLK-----PGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYL-K-- 119 (160)
T ss_pred EEecchhhcCCCHHHHHHHHHHHcC-----cCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhH-H--
Confidence 3344567777777777788888887 57888877765432211100 010000000000 00001100 0
Q ss_pred ccccCCcccCCcccccCCCCCCChhHHHHHHHHhCCCCcceeeeeccc
Q 012834 369 KFRKRGRVIRPGANRVDGKCPLTPLEVLNCIELSALPSINLLFNKFIL 416 (455)
Q Consensus 369 k~~k~~~~i~~~~~R~~G~CPLTPeEvgl~LraLGf~~~T~iY~a~g~ 416 (455)
..... +++|+|..-+|+.-||.+-+.-+.+.|-
T Consensus 120 --------------~si~~-f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 120 --------------YSING-YLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred --------------HHHHH-CcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 00022 5899999999999999999887777664
No 5
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=31.09 E-value=34 Score=27.70 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=14.2
Q ss_pred CCCCCChhHHHHHHHHh
Q 012834 386 GKCPLTPLEVLNCIELS 402 (455)
Q Consensus 386 G~CPLTPeEvgl~LraL 402 (455)
|-| +||||-+-+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 779 9999999998875
No 6
>PF04561 RNA_pol_Rpb2_2: RNA polymerase Rpb2, domain 2; InterPro: IPR007642 RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain []. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble. Many of the bacterial members contain large insertions within this domain, a region known as dispensable region 1 (DRI).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 3LTI_A 3IYD_C 3LU0_C 2Y0S_R 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C ....
Probab=28.08 E-value=25 Score=31.71 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCCcceeee
Q 012834 395 VLNCIELSALPSINLLFN 412 (455)
Q Consensus 395 vgl~LraLGf~~~T~iY~ 412 (455)
+.++|||||+.++.-||-
T Consensus 54 i~ilLrALG~~sd~eI~~ 71 (190)
T PF04561_consen 54 IVILLRALGIESDKEIIE 71 (190)
T ss_dssp HHHHHHHTT--STCHHHH
T ss_pred eEEeehhhcCcCcccccc
Confidence 789999999988877774
No 7
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=24.62 E-value=40 Score=35.77 Aligned_cols=107 Identities=20% Similarity=0.380 Sum_probs=62.3
Q ss_pred CCChhhhhhhhhhhhhhcce-EEEccCCcccc-cCCC------Ccchhhc------------ccccccccccchhHHHHH
Q 012834 252 WSSPTHYLQKVLPKLQHLGA-VRIAPFSNRLA-QGVP------SNIQGLR------------CLANFEALRFSEPIRMLA 311 (455)
Q Consensus 252 ~s~~~yY~~~VLP~L~k~~V-I~l~~f~~RLa-~~lP------~~iQrLR------------Crvnf~ALrF~p~I~~lg 311 (455)
|.+-.|+++.|+|+-.+.|| +.+.|-|+-+. +++| .+++|+- |.-+|.+-- ..++-++.
T Consensus 181 w~nl~yFL~~v~PvAEe~gV~laiHPDDPP~~~~GlpRi~~~~e~~~~~~~~~~Sp~nGltfC~Gs~g~~~-~ndl~~~i 259 (351)
T PF03786_consen 181 WENLKYFLEAVIPVAEEAGVKLAIHPDDPPWPLFGLPRIVSTAEDLKRILDLVDSPANGLTFCTGSLGAMP-DNDLPEMI 259 (351)
T ss_dssp HHHHHHHHHHHHHHHHHCT-EEEEE--SSSS-BTTB---TTSHHHHHHHHHCT-STTEEEEEECCHHHCST-TS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHhCCEEEeCCCCCCCccCCCCcccCCHHHHHHHHHhCCCccccEEeecCccccCC-CCCHHHHH
Confidence 77889999999999999999 77788888766 4566 2456553 444444332 24566666
Q ss_pred HHHHHHHhhcccCCCCceEEEeec---chhhhhhhhcccCCCChhHHH-HHHHHHHhhcccc
Q 012834 312 EKMVDRMVKNSSQSGGKYVSVHLR---FETDMVAFSCCEYDGGEEEKR-EMDIARERSWRGK 369 (455)
Q Consensus 312 ~~LV~Rmr~~s~~s~g~yIALHLR---fE~DMlAfSgC~~~gg~~E~~-eL~~~R~~~wk~k 369 (455)
+...+| |- +| +|+| .+.+.-.|.=|.++.|+-..- .|+++++..+++-
T Consensus 260 r~f~~~-rI-------~f--vH~Rnv~~~~~~~~F~E~~h~~G~~Dm~~v~~al~~~~~~g~ 311 (351)
T PF03786_consen 260 REFGER-RI-------HF--VHFRNVKGEPGDGSFEEAFHLDGDVDMYAVMKALRDVGYDGP 311 (351)
T ss_dssp HHCHHT-GE-------EE--EEE-EEEEE-STTEEEEE-SSCSSS-HHHHHHHHHHCT-ECE
T ss_pred HHHhcc-Cc-------ce--EEecccccccCCCCEEecCCcCCCccHHHHHHHHHHhCCCce
Confidence 666664 32 45 4887 333456777788877776544 4555666556553
No 8
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=22.93 E-value=53 Score=25.72 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.0
Q ss_pred ccCCCCCCChhHHHHHHHHhCCCCc
Q 012834 383 RVDGKCPLTPLEVLNCIELSALPSI 407 (455)
Q Consensus 383 R~~G~CPLTPeEvgl~LraLGf~~~ 407 (455)
+..|. .++++|+.-+|+.|||+-+
T Consensus 13 ~llG~-~i~~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 13 RLLGL-DLSAEEIEEILKRLGFEVE 36 (71)
T ss_pred HHHCC-CCCHHHHHHHHHHCCCeEE
Confidence 45565 4999999999999999864
No 9
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=22.42 E-value=25 Score=33.18 Aligned_cols=25 Identities=28% Similarity=0.679 Sum_probs=20.4
Q ss_pred CcEeecccccccccCCCCCCCCCCChHH
Q 012834 187 ATLVIPIFHLNSVWRDSSNFGDIFDEDF 214 (455)
Q Consensus 187 ATLVlP~l~~~S~W~D~S~F~DIFDvdh 214 (455)
||+| |..+.+|+|.|.|.-++|.||
T Consensus 26 A~II---Leah~vW~DgsGyQ~LlDaDH 50 (161)
T PF10365_consen 26 ARII---LEAHNVWGDGSGYQMLLDADH 50 (161)
T ss_pred eEEE---EeccccccCCcceEEEEcCCc
Confidence 4555 456678999999999999998
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=21.74 E-value=2e+02 Score=27.89 Aligned_cols=27 Identities=7% Similarity=-0.050 Sum_probs=22.6
Q ss_pred CCCCCCChhHHHHHHHHhCCCCcceee
Q 012834 385 DGKCPLTPLEVLNCIELSALPSINLLF 411 (455)
Q Consensus 385 ~G~CPLTPeEvgl~LraLGf~~~T~iY 411 (455)
+-..|+|++|..-+|+.-||..-..+|
T Consensus 204 ~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 204 NVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred hhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 456789999999999999999765554
Done!