Query 012834
Match_columns 455
No_of_seqs 187 out of 379
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 17:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 98.3 4.2E-06 1.4E-10 84.6 13.6 70 154-227 19-100 (408)
2 3zy2_A Putative GDP-fucose pro 97.1 0.0011 3.9E-08 67.4 8.7 67 155-227 6-76 (362)
3 2hhc_A NODZ, nodulation fucosy 73.3 4.6 0.00016 39.0 5.8 40 156-195 3-42 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 67.3 51 0.0018 34.8 12.6 53 156-212 144-199 (526)
5 1ydn_A Hydroxymethylglutaryl-C 35.7 17 0.00057 34.8 2.4 51 385-440 235-293 (295)
6 1l2m_A REP protein; A+B fold, 32.4 37 0.0013 29.5 3.7 27 387-414 17-43 (118)
7 2eqr_A N-COR1, N-COR, nuclear 30.1 41 0.0014 25.3 3.2 22 382-403 7-28 (61)
8 2hhc_A NODZ, nodulation fucosy 28.6 38 0.0013 32.5 3.5 36 298-338 145-180 (330)
9 3l32_A Phosphoprotein; antipar 26.4 29 0.00099 25.7 1.7 21 300-320 2-22 (45)
10 2ld4_A Anamorsin; methyltransf 21.4 37 0.0013 28.7 1.7 91 299-413 71-165 (176)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=98.34 E-value=4.2e-06 Score=84.60 Aligned_cols=70 Identities=21% Similarity=0.387 Sum_probs=54.8
Q ss_pred CCCCceEEEEec-C-ChhhHHHHHHHHHHHHHHhcCc----EeecccccccccCCCC------CCCCCCChHHHHHhccC
Q 012834 154 PKSNGFLIIEAN-G-GLNQQRLSICDAVAVAGLLNAT----LVIPIFHLNSVWRDSS------NFGDIFDEDFFMHALRS 221 (455)
Q Consensus 154 ~~snGYL~V~~n-G-GLNQqR~~IcDAVaVARiLNAT----LVlP~l~~~S~W~D~S------~F~DIFDvdhFI~sL~~ 221 (455)
...++||+-..| | |.|.||...-.|.++|+.||.| ||||-...---|+-.+ .|++.||++.+ +.
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence 467899999975 5 8999999999999999999999 9999664333355332 49999999865 45
Q ss_pred CcEEec
Q 012834 222 NVNVVK 227 (455)
Q Consensus 222 dVrIVk 227 (455)
.|+||.
T Consensus 95 ~vpVI~ 100 (408)
T 4ap5_A 95 NIPVIE 100 (408)
T ss_dssp TSCEEE
T ss_pred hCCeeE
Confidence 667764
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=97.11 E-value=0.0011 Score=67.44 Aligned_cols=67 Identities=24% Similarity=0.328 Sum_probs=51.1
Q ss_pred CCCceEEEE-ecCChhhHHHHHHHHHHHHHHhcCcEeecccccccccCCCCC---CCCCCChHHHHHhccCCcEEec
Q 012834 155 KSNGFLIIE-ANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSN---FGDIFDEDFFMHALRSNVNVVK 227 (455)
Q Consensus 155 ~snGYL~V~-~nGGLNQqR~~IcDAVaVARiLNATLVlP~l~~~S~W~D~S~---F~DIFDvdhFI~sL~~dVrIVk 227 (455)
.+||||+-= |-|-..+|-...--+.+.|+.||-|||||-+-.-.. -.+. |++-|+++. |+..-|||.
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~--~~~~~vpf~~yF~v~~----l~~yhrvi~ 76 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH--PETKMIPFEFLFQVGT----VAKYTRVVT 76 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS--SSCEEECHHHHBCHHH----HTTTSCEEC
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC--Ccccccchhheeecch----hhhhceeee
Confidence 579998875 999999999999999999999999999998654221 1143 788888765 444445554
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=73.32 E-value=4.6 Score=38.95 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCceEEEEecCChhhHHHHHHHHHHHHHHhcCcEeecccc
Q 012834 156 SNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFH 195 (455)
Q Consensus 156 snGYL~V~~nGGLNQqR~~IcDAVaVARiLNATLVlP~l~ 195 (455)
+..||++...|||.+|=-+++.|.++|...|.+|+|--..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~ 42 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG 42 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 4579999999999999999999999999999998886443
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=67.29 E-value=51 Score=34.82 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=40.4
Q ss_pred CCceEEEEe--cCChhhHHHHHHHHHHHHHHhcCcEeecccccccccCC-CCCCCCCCCh
Q 012834 156 SNGFLIIEA--NGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRD-SSNFGDIFDE 212 (455)
Q Consensus 156 snGYL~V~~--nGGLNQqR~~IcDAVaVARiLNATLVlP~l~~~S~W~D-~S~F~DIFDv 212 (455)
+..||+... ..|+--+-..++-+..+|-.+|-||||-.-. |.- ...|+++|+.
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P 199 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP 199 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC
Confidence 347888886 4799988888999999999999999994422 442 2467777764
No 5
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=35.70 E-value=17 Score=34.77 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=32.2
Q ss_pred CCCCCCCh--------hHHHHHHHHhCCCCcceeeeecccccchHHHHHHHHHhhhhhhhhhhh
Q 012834 385 DGKCPLTP--------LEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLLKNKFL 440 (455)
Q Consensus 385 ~G~CPLTP--------eEvgl~LraLGf~~~T~iY~a~g~i~~~~~~~~~l~~~~~p~l~n~~~ 440 (455)
.|.||+-| |++..+|+.+|++.. +---+++...+|++.+++ .++.++.||-
T Consensus 235 lG~cp~a~g~~GN~~~e~lv~~l~~~g~~~~----id~~~l~~~~~~~~~~~~-~~~~~~~~~~ 293 (295)
T 1ydn_A 235 LGGCPFAPGAKGNVDTVAVVEMLHEMGFETG----LDLDRLRSAGLFTQALRQ-DKAALEHHHH 293 (295)
T ss_dssp CSCBTTBTTSCCBCBHHHHHHHHHHTTCBCC----CCHHHHHHHHHHHHHHHC-C---------
T ss_pred CCCCCCCCCCcCChhHHHHHHHHHhcCCCCC----cCHHHHHHHHHHHHHHHC-CCCCcccccc
Confidence 37788876 468889999998753 234567888889999988 8888887763
No 6
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=32.36 E-value=37 Score=29.50 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=21.9
Q ss_pred CCCCChhHHHHHHHHhCCCCcceeeeec
Q 012834 387 KCPLTPLEVLNCIELSALPSINLLFNKF 414 (455)
Q Consensus 387 ~CPLTPeEvgl~LraLGf~~~T~iY~a~ 414 (455)
+||||+||+.-.|+.|--|.+ ..||..
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i 43 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKI 43 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeee
Confidence 799999999999999986654 556543
No 7
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.05 E-value=41 Score=25.27 Aligned_cols=22 Identities=9% Similarity=-0.324 Sum_probs=18.5
Q ss_pred cccCCCCCCChhHHHHHHHHhC
Q 012834 382 NRVDGKCPLTPLEVLNCIELSA 403 (455)
Q Consensus 382 ~R~~G~CPLTPeEvgl~LraLG 403 (455)
..++...|.||+|..+|++++-
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHH
Confidence 3346788999999999999985
No 8
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=28.58 E-value=38 Score=32.50 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=26.3
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccCCCCceEEEeecchh
Q 012834 298 FEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFET 338 (455)
Q Consensus 298 f~ALrF~p~I~~lg~~LV~Rmr~~s~~s~g~yIALHLRfE~ 338 (455)
|.-|+++++|++..+.+.+.+- .+.++|+||.|.=.
T Consensus 145 ~~yl~p~~~i~~~i~~~~~~~~-----~~~~~VGVHIRrgD 180 (330)
T 2hhc_A 145 FRNIKLRSEIRARIDALYEEHF-----SGHSIIGVHVRHGN 180 (330)
T ss_dssp HHHSCBCHHHHHHHHHHHHHHT-----TTSEEEEEEECC--
T ss_pred HhcCCccHHHHHHHHHHHHHhc-----cCCceEEEEEecCC
Confidence 4677899999998888876532 13599999999543
No 9
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=26.38 E-value=29 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.0
Q ss_pred ccccchhHHHHHHHHHHHHhh
Q 012834 300 ALRFSEPIRMLAEKMVDRMVK 320 (455)
Q Consensus 300 ALrF~p~I~~lg~~LV~Rmr~ 320 (455)
|+-|+.-+.++|..+|.||++
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 455788899999999999994
No 10
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=21.37 E-value=37 Score=28.66 Aligned_cols=91 Identities=11% Similarity=-0.083 Sum_probs=49.2
Q ss_pred cccccc-hhHHHHHHHHHHHHhhcccCCCCceEEEeecchhhhhhhhcccCCCChhHHHHHHHHHHhhcccccccCCccc
Q 012834 299 EALRFS-EPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVI 377 (455)
Q Consensus 299 ~ALrF~-p~I~~lg~~LV~Rmr~~s~~s~g~yIALHLRfE~DMlAfSgC~~~gg~~E~~eL~~~R~~~wk~k~~k~~~~i 377 (455)
.+|.+. ++..++-+.+.+-|+ .+|.++-.|.-++.+. ...+....+|-. ...++-.| +
T Consensus 71 ~~l~~~~~~~~~~l~~~~r~Lk-----pgG~l~~~~~~~~~~~----~~~~~~~~~~~~--~~l~~aGf----------i 129 (176)
T 2ld4_A 71 LVPGSTTLHSAEILAEIARILR-----PGGCLFLKEPVETAVD----NNSKVKTASKLC--SALTLSGL----------V 129 (176)
T ss_dssp CSTTCCCCCCHHHHHHHHHHEE-----EEEEEEEEEEEESSSC----SSSSSCCHHHHH--HHHHHTTC----------E
T ss_pred ChhhhcccCHHHHHHHHHHHCC-----CCEEEEEEcccccccc----cccccCCHHHHH--HHHHHCCC----------c
Confidence 344444 566666677776666 4788888776543210 011212222211 11222233 1
Q ss_pred CCcccccCCCCCCChhHHHHHHHHhCCCCc---ceeeee
Q 012834 378 RPGANRVDGKCPLTPLEVLNCIELSALPSI---NLLFNK 413 (455)
Q Consensus 378 ~~~~~R~~G~CPLTPeEvgl~LraLGf~~~---T~iY~a 413 (455)
. .+....-|++|+++..+...+|++.+ ..+++|
T Consensus 130 ~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a 165 (176)
T 2ld4_A 130 E---VKELQREPLTPEEVQSVREHLGHESDNLLFVQITG 165 (176)
T ss_dssp E---EEEEEEECCCHHHHHHHHHHTCCCCSSEEEEEEEE
T ss_pred E---eecCcccCCCHHHHHHHHHHhcccCCceEEEEEec
Confidence 1 11223458999999999999999876 444444
Done!