Query 012834
Match_columns 455
No_of_seqs 187 out of 379
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 17:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012834.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012834hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya2 a.5.2.1 (A:317-360) DN 56.2 1.2 8.8E-05 31.2 0.2 26 391-416 1-30 (44)
2 d2ihoa2 d.3.1.18 (A:156-293) A 42.4 1.7 0.00012 36.5 -1.1 35 188-222 31-70 (138)
3 d1l5ia_ d.89.1.4 (A:) DNA-bind 35.9 13 0.00093 30.4 3.5 26 387-413 17-42 (118)
4 d1vjna_ d.157.1.4 (A:) Hypothe 30.9 27 0.002 29.6 5.0 66 159-232 130-200 (209)
5 d3nula_ d.110.1.1 (A:) Profili 19.1 13 0.00098 30.0 0.5 65 385-453 36-103 (130)
6 d1okga1 c.46.1.2 (A:7-162) 3-m 15.0 1.4E+02 0.01 24.2 6.2 39 384-422 65-106 (156)
7 d1y0ya1 b.49.3.1 (A:73-163) Fr 14.6 32 0.0023 26.0 1.7 16 155-170 8-23 (91)
8 d2f3na1 a.60.1.2 (A:2-65) Sh3 14.6 35 0.0025 23.5 1.8 26 390-415 4-29 (64)
9 d1ypra_ d.110.1.1 (A:) Profili 12.6 16 0.0012 29.1 -0.7 36 386-424 33-68 (125)
10 d1luaa2 c.58.1.4 (A:2-97) Meth 12.3 67 0.0049 25.2 3.0 51 386-436 32-88 (96)
No 1
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.22 E-value=1.2 Score=31.19 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=19.5
Q ss_pred ChhHHHHH--HHHhCCCCc--ceeeeeccc
Q 012834 391 TPLEVLNC--IELSALPSI--NLLFNKFIL 416 (455)
Q Consensus 391 TPeEvgl~--LraLGf~~~--T~iY~a~g~ 416 (455)
||+|..-+ |.+|||+.+ .+.|+|-.|
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 67765444 889999998 567888765
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=42.40 E-value=1.7 Score=36.51 Aligned_cols=35 Identities=31% Similarity=0.549 Sum_probs=29.1
Q ss_pred cEeecccccccccCCCC-----CCCCCCChHHHHHhccCC
Q 012834 188 TLVIPIFHLNSVWRDSS-----NFGDIFDEDFFMHALRSN 222 (455)
Q Consensus 188 TLVlP~l~~~S~W~D~S-----~F~DIFDvdhFI~sL~~d 222 (455)
-||+|...-+++|+++- -=++|||-|.|--..|.-
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaA 70 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAA 70 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHH
Confidence 38999999999999862 248999999998877654
No 3
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=35.91 E-value=13 Score=30.43 Aligned_cols=26 Identities=38% Similarity=0.468 Sum_probs=21.3
Q ss_pred CCCCChhHHHHHHHHhCCCCcceeeee
Q 012834 387 KCPLTPLEVLNCIELSALPSINLLFNK 413 (455)
Q Consensus 387 ~CPLTPeEvgl~LraLGf~~~T~iY~a 413 (455)
+|||||||+.-.|+.|==|.+. .||.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~ 42 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIK 42 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEE
Confidence 7999999999999999765554 5665
No 4
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=30.94 E-value=27 Score=29.59 Aligned_cols=66 Identities=29% Similarity=0.468 Sum_probs=40.2
Q ss_pred eEEEEecCChhhHHHHHHHHHHHHHHhcCcEeecccccccccCCCCCCCCCCChHHHHHhccC-----CcEEeccCchh
Q 012834 159 FLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRS-----NVNVVKELPED 232 (455)
Q Consensus 159 YL~V~~nGGLNQqR~~IcDAVaVARiLNATLVlP~l~~~S~W~D~S~F~DIFDvdhFI~sL~~-----dVrIVk~LP~~ 232 (455)
.+++.+.|.. ...--+|+-+|+.|++-.|||- + |+.....| ++=++|.|++.++. ++-.+.++|++
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~-H---~~t~~~~~-~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~ 200 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPM-H---YKTKYLKF-NLLPVDDFLKLFDSYERVGNILELFEKPKE 200 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEE-S---CCCSSCCT-TCCCTHHHHTTSSCCEECCSEEEESSCCCS
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEe-c---cCCccccc-CcCCHHHHHHHhhhhcccCcEEEeccCCCC
Confidence 4555544432 1346788999999999999996 1 22223333 45567888887663 33344455544
No 5
>d3nula_ d.110.1.1 (A:) Profilin (actin-binding protein) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=19.14 E-value=13 Score=30.02 Aligned_cols=65 Identities=20% Similarity=-0.052 Sum_probs=37.2
Q ss_pred CCCCCCChhHHHHHHHHhCCCCcceeeeecccccchHHHHHHHHHhhhhhh---hhhhhhcccccccEEEEe
Q 012834 385 DGKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYEYLLLKLCFVLL---KNKFLKCCANTLQFLVII 453 (455)
Q Consensus 385 ~G~CPLTPeEvgl~LraLGf~~~T~iY~a~g~i~~~~~~~~~l~~~~~p~l---~n~~~~~~~~~~~~~~~~ 453 (455)
.|...+||+|+..+..++.=++ .+ .++|--++++|||- |+.-.--.+ +.+.=-|+.-|-|.+||-
T Consensus 36 ~gf~~l~~~E~~~i~~~f~~~~--~~-~~~Gi~~~G~KY~~-lr~d~~~~i~~kk~~~Gi~i~KT~~~iIi~ 103 (130)
T d3nula_ 36 AKFPQLKPQEIDGIKKDFEEPG--FL-APTGLFLGGEKYMV-IQGEQGAVIRGKKGPGGVTIKKTNQALVFG 103 (130)
T ss_dssp TTCCCCCHHHHHHHHHHHHSTT--SS-TTTCEEETTEEEEE-EEEETTTEEEEEETTEEEEEEECSSEEEEE
T ss_pred CCCCCCCHHHHHHHHHHhcCcc--cc-ccCCeEECCeEEEE-EecCCCcEEEEecCCCeEEEEECCCEEEEE
Confidence 3556799999999999885222 22 26677778888763 221000001 112223566777776664
No 6
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=15.02 E-value=1.4e+02 Score=24.20 Aligned_cols=39 Identities=8% Similarity=-0.079 Sum_probs=27.4
Q ss_pred cCCCCCC-ChhHHHHHHHHhCCCCcceeeee--cccccchHH
Q 012834 384 VDGKCPL-TPLEVLNCIELSALPSINLLFNK--FILIWFLVK 422 (455)
Q Consensus 384 ~~G~CPL-TPeEvgl~LraLGf~~~T~iY~a--~g~i~~~~~ 422 (455)
..|.=|| +|++..-.|+++|.+++|.|-+= .+..+.+.+
T Consensus 65 ~~~~~~lP~~~~~~~~l~~lGI~~~~~VVvYd~~~g~~~A~R 106 (156)
T d1okga1 65 STARHPLPPCAEFIDWCMANGMAGELPVLCYDDECGAMGGCR 106 (156)
T ss_dssp CCCSSCCCCHHHHHHHHHHTTCSSSSCEEEECSSTTTTTHHH
T ss_pred CCCccccCCHHHHHHHHHhccccCCceEEEEeCCCCchHHHH
Confidence 3444344 78999999999999999988774 333444444
No 7
>d1y0ya1 b.49.3.1 (A:73-163) Frv operon protein FrvX {Pyrococcus horikoshii [TaxId: 53953]}
Probab=14.61 E-value=32 Score=26.02 Aligned_cols=16 Identities=38% Similarity=0.789 Sum_probs=14.0
Q ss_pred CCCceEEEEecCChhh
Q 012834 155 KSNGFLIIEANGGLNQ 170 (455)
Q Consensus 155 ~snGYL~V~~nGGLNQ 170 (455)
..||||.|...||.+.
T Consensus 8 ~~~G~l~v~~vGG~~~ 23 (91)
T d1y0ya1 8 EKNGFLRVAPIGGVDP 23 (91)
T ss_dssp CTTSCEEEEEESSCCG
T ss_pred CCCCeEEEEecCCCCh
Confidence 5789999999999874
No 8
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=14.60 E-value=35 Score=23.48 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHhCCCCcceeeeecc
Q 012834 390 LTPLEVLNCIELSALPSINLLFNKFI 415 (455)
Q Consensus 390 LTPeEvgl~LraLGf~~~T~iY~a~g 415 (455)
-||+||+-.|+.+|++.=..+|...+
T Consensus 4 Ws~~~V~~wL~~~gl~~y~~~F~~~~ 29 (64)
T d2f3na1 4 WSKFDVGDWLESIHLGEHRDRFEDHE 29 (64)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHCC
Confidence 38999999999999987666665543
No 9
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.62 E-value=16 Score=29.15 Aligned_cols=36 Identities=19% Similarity=0.017 Sum_probs=23.8
Q ss_pred CCCCCChhHHHHHHHHhCCCCcceeeeecccccchHHHH
Q 012834 386 GKCPLTPLEVLNCIELSALPSINLLFNKFILIWFLVKYE 424 (455)
Q Consensus 386 G~CPLTPeEvgl~LraLGf~~~T~iY~a~g~i~~~~~~~ 424 (455)
...++||+|+.-++.++.=++.+ .+.|--++++|||
T Consensus 33 ~gf~~~~~E~~~i~~~f~~~~~~---~~~Gi~i~G~KY~ 68 (125)
T d1ypra_ 33 GGLSLQPNEIGEIVQGFDNPAGL---QSNGLHIQGQKFM 68 (125)
T ss_dssp SCCCCCHHHHHHHHHHTTCTHHH---HHHCEEETTEEEE
T ss_pred CCCCCCHHHHHHHHHHhcCcchh---ccCCEEEcCeEEE
Confidence 44789999999999987533322 3445556666664
No 10
>d1luaa2 c.58.1.4 (A:2-97) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Probab=12.28 E-value=67 Score=25.20 Aligned_cols=51 Identities=14% Similarity=-0.056 Sum_probs=42.3
Q ss_pred CCCCCChhHHHHHHHHhCCCC------cceeeeecccccchHHHHHHHHHhhhhhhh
Q 012834 386 GKCPLTPLEVLNCIELSALPS------INLLFNKFILIWFLVKYEYLLLKLCFVLLK 436 (455)
Q Consensus 386 G~CPLTPeEvgl~LraLGf~~------~T~iY~a~g~i~~~~~~~~~l~~~~~p~l~ 436 (455)
..+-.||+||.=+-+..=|.. +|-|||.+..+--++..++.-++.+||-+.
T Consensus 32 ~y~~V~~~~V~~LVqdaIFsR~p~~~~~T~IFiGG~d~~~a~~ml~~~kk~~~~Pf~ 88 (96)
T d1luaa2 32 GYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKKRFFGPFR 88 (96)
T ss_dssp EESSCCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHHHHCBTTBC
T ss_pred ccCCcCHHHhhhhhcceeEccCCcccceeEEEECCccHHHHHHHHHHHHHhccCCeE
Confidence 445589999988888877765 499999999999999999999888888653
Done!