BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012835
         (455 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1D3E|2 Chain 2, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16) Complexed
           With A Two-Domain Fragment Of Its Cellular Receptor,
           Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
           Implications For Virus-Receptor Interactions. Alpha
           Carbons Only
          Length = 252

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 347 TTKDV-DLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNK 404
           T++DV + +   G+  ++L P DAT        DT   +FY  D  K  N   + WW K
Sbjct: 15  TSQDVANAVVGYGVWPHYLTPQDATAIDKPTQPDTSSNRFYTLD-SKMWNSTSKGWWWK 72


>pdb|1AYN|2 Chain 2, Human Rhinovirus 16 Coat Protein
 pdb|1AYM|2 Chain 2, Human Rhinovirus 16 Coat Protein At High Resolution
 pdb|1QJU|2 Chain 2, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
           Compound Vp61209
 pdb|1QJX|2 Chain 2, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
           Compound Win68934
 pdb|1QJY|2 Chain 2, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
           Compound Vp65099
 pdb|1NCR|B Chain B, The Structure Of Rhinovirus 16 When Complexed With
           Pleconaril, An Antiviral Compound
 pdb|1ND2|B Chain B, The Structure Of Rhinovirus 16
 pdb|1ND3|B Chain B, The Structure Of Hrv16, When Complexed With Pleconaril, An
           Antiviral Compound
          Length = 261

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 347 TTKDV-DLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNK 404
           T++DV + +   G+  ++L P DAT        DT   +FY  D  K  N   + WW K
Sbjct: 24  TSQDVANAVVGYGVWPHYLTPQDATAIDKPTQPDTSSNRFYTLD-SKMWNSTSKGWWWK 81


>pdb|1C8M|2 Chain 2, Refined Crystal Structure Of Human Rhinovirus 16 Complexed
           With Vp63843 (Pleconaril), An Anti-Picornaviral Drug
           Currently In Clinical Trials
          Length = 252

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 347 TTKDV-DLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNK 404
           T++DV + +   G+  ++L P DAT        DT   +FY  D  K  N   + WW K
Sbjct: 15  TSQDVANAVVGYGVWPHYLTPQDATAIDKPTQPDTSSNRFYTLD-SKMWNSTSKGWWWK 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,402,543
Number of Sequences: 62578
Number of extensions: 544607
Number of successful extensions: 1367
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 4
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)