BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012835
         (455 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
           SV=1
          Length = 476

 Score =  185 bits (470), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 212/421 (50%), Gaps = 33/421 (7%)

Query: 48  NCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEK 107
           +CCIFR P      N KA+ P   S+GP+H+GE HL++ ++ K R LQ  L        +
Sbjct: 45  SCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVE 104

Query: 108 LTELLEEITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPI 167
              L++ +  +E   R+ Y+E ++   +  + ++V+DGCFI+  F   S  +    +DPI
Sbjct: 105 ENVLVKAVVDLEDKIRKSYSEELKTGHD-LMFMMVLDGCFILMVFLIMSGNIELS-EDPI 162

Query: 168 FSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDT 227
           FS+  L+  +  DL+LLENQ+P+FVL+ L+V     ++  + DL R+   FF+     + 
Sbjct: 163 FSIPWLLSSIQSDLLLLENQVPFFVLQTLYV---GSKIGVSSDLNRIAFHFFKNPIDKEG 219

Query: 228 IQINSDQYRSHKIKHILDLLRYSLILPIRSE-----------KYTEKNAGWEP------- 269
                +++R++K KH+LDL+R +  LP  SE           +  E  +G  P       
Sbjct: 220 SYW--EKHRNYKAKHLLDLIRETF-LPNTSESDKASSPHVQVQLHEGKSGNVPSVDSKAV 276

Query: 270 --FSCAAKINEAGIEFS-RKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQC 326
                A ++   GI+F  R+    +IL+++     L IP L       + F N ++FEQ 
Sbjct: 277 PLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNCVAFEQF 336

Query: 327 YPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGIL--NNWLDPDDATLYFNKLYNDT--HV 382
           Y +    IT+Y  FM  L+   +DV  L    ++  N++   ++ + +F  +  D    V
Sbjct: 337 YTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVVFEV 396

Query: 383 KKFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIV 442
              Y +++ K VNEY + W+N     + H +F +PW  +S  A  F++L T LQ+   I+
Sbjct: 397 DTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTMLQSTVAIL 456

Query: 443 G 443
            
Sbjct: 457 S 457


>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
           GN=At3g02645 PE=3 SV=1
          Length = 529

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 30/246 (12%)

Query: 19  DDHHFAISI-KSLVSSLE-HMMADDNISISSNCCIFRNPVILSCHNQKAFAPNGFSVGPF 76
           D+  + I++ KSL + LE H + +  +SI      F  P  L C +  ++ P+  S+GP+
Sbjct: 17  DETRWVINVQKSLDAELEEHDLEEVTVSI------FNVPKALMCSHPDSYTPHRVSIGPY 70

Query: 77  HHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPIRFDKEQ 136
           H  +  L   E+ KL   + +  ++ + +    +L+E++ S+E   R CY + I F+ E 
Sbjct: 71  HCLKPELHEMERYKLMIARKIRNQYNSFR--FHDLVEKLQSMEIKIRACYHKYIGFNGET 128

Query: 137 FVRILVVDGCFIIE-----SFRKHSNEVSKEPDDPIFSMACLMELLNHDLVLLENQIPWF 191
            + I+ VD  F+IE     SFRK    +++   + I            D++++ENQIP F
Sbjct: 129 LLWIMAVDSSFLIEFLKIYSFRKVETLINRVGHNEIL----------RDIMMIENQIPLF 178

Query: 192 VLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIK---HILDLLR 248
           VL +     L      + DL+  VL       S   I+ + DQ    + +   HILD L 
Sbjct: 179 VLRKTLEFQLESTESAD-DLLLSVLTGLCKDLSPLVIKFDDDQILKAQFQECNHILDFL- 236

Query: 249 YSLILP 254
           Y +I+P
Sbjct: 237 YQMIVP 242



 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 5/153 (3%)

Query: 272 CAAKINEAGIEFSRKRDYSTILDIKF--YNGTLDIPPLAIHETTETIFRNLISFEQCYPN 329
             + +++AG+ F +   +  I  + F   +G   +P + +   TET+ RNL+++E    +
Sbjct: 347 SVSDLHKAGVRF-KPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNTS 405

Query: 330 CDPFITSYAKFMDNLIYTTKDVDLLTEKGILNNWLDPD-DATLYFNKLYNDTHVKKF-YY 387
                T Y + ++ +I + +DV LL E+G+L + L  D +A   +N +     + K  + 
Sbjct: 406 GPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRLTKVGFL 465

Query: 388 DDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAI 420
           D   + VN Y    W       +  Y    W I
Sbjct: 466 DKTIEDVNRYYTGRWKVKIGRLVEVYVYGSWQI 498


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.139    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,832,708
Number of Sequences: 539616
Number of extensions: 7437266
Number of successful extensions: 15579
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15568
Number of HSP's gapped (non-prelim): 5
length of query: 455
length of database: 191,569,459
effective HSP length: 121
effective length of query: 334
effective length of database: 126,275,923
effective search space: 42176158282
effective search space used: 42176158282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)