Query 012835
Match_columns 455
No_of_seqs 130 out of 678
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 6E-108 1E-112 847.0 33.0 378 51-433 1-391 (391)
2 PF12911 OppC_N: N-terminal TM 60.4 8.2 0.00018 28.3 2.5 33 410-442 9-41 (56)
3 PF14770 TMEM18: Transmembrane 57.5 14 0.00031 32.3 3.9 50 390-442 54-103 (123)
4 PF07438 DUF1514: Protein of u 51.7 17 0.00036 28.0 2.8 22 418-439 2-23 (66)
5 PRK10132 hypothetical protein; 51.0 15 0.00032 31.4 2.9 25 410-435 78-103 (108)
6 PRK10404 hypothetical protein; 50.7 15 0.00033 30.9 2.9 19 416-435 79-97 (101)
7 PHA02103 hypothetical protein 47.1 45 0.00098 28.3 5.0 72 289-363 16-104 (135)
8 PF09069 EF-hand_3: EF-hand; 46.8 38 0.00082 28.0 4.5 57 88-144 2-76 (90)
9 PF02468 PsbN: Photosystem II 42.0 25 0.00055 24.9 2.3 29 423-451 5-33 (43)
10 KOG3110 Riboflavin kinase [Coe 39.6 27 0.00059 31.0 2.7 62 66-127 65-138 (153)
11 PF11293 DUF3094: Protein of u 37.9 89 0.0019 23.3 4.7 34 392-430 10-43 (55)
12 PF05421 DUF751: Protein of un 35.1 68 0.0015 24.5 4.0 32 412-443 29-60 (61)
13 COG4575 ElaB Uncharacterized c 34.5 30 0.00064 29.3 2.1 23 411-434 76-99 (104)
14 PF05767 Pox_A14: Poxvirus vir 33.6 89 0.0019 25.8 4.6 33 416-448 42-74 (92)
15 PF14579 HHH_6: Helix-hairpin- 32.9 2.4E+02 0.0052 22.7 7.3 81 280-365 1-84 (90)
16 PRK13183 psbN photosystem II r 32.6 50 0.0011 23.8 2.6 29 423-451 8-36 (46)
17 CHL00020 psbN photosystem II p 31.3 40 0.00088 23.9 2.0 30 422-451 4-33 (43)
18 PF04971 Lysis_S: Lysis protei 30.4 72 0.0016 24.9 3.4 47 405-451 20-67 (68)
19 PHA02680 ORF090 IMV phosphoryl 29.9 1.1E+02 0.0023 25.2 4.4 33 415-447 42-74 (91)
20 PF10961 DUF2763: Protein of u 29.3 98 0.0021 25.6 4.3 30 415-444 13-45 (91)
21 PF01034 Syndecan: Syndecan do 26.8 22 0.00048 27.4 0.1 39 413-452 4-43 (64)
22 KOG3942 MIF4G domain-containin 25.5 48 0.001 33.5 2.2 104 319-427 131-241 (348)
23 KOG4134 DNA-dependent RNA poly 25.4 54 0.0012 31.6 2.4 44 46-100 22-65 (253)
24 PF11446 DUF2897: Protein of u 24.9 87 0.0019 23.4 3.0 21 416-436 4-24 (55)
25 PF15103 G0-G1_switch_2: G0/G1 23.5 86 0.0019 26.4 2.9 27 421-447 29-55 (102)
26 PHA03048 IMV membrane protein; 22.9 1.8E+02 0.004 23.9 4.7 34 416-449 41-74 (93)
27 PHA02898 virion envelope prote 21.8 1.8E+02 0.0039 24.0 4.4 34 415-448 41-74 (92)
28 PF00473 CRF: Corticotropin-re 21.3 37 0.0008 23.6 0.3 22 304-326 1-22 (39)
29 cd00925 Cyt_c_Oxidase_VIa Cyto 20.3 1E+02 0.0023 25.2 2.8 30 415-444 13-42 (86)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=6.2e-108 Score=846.95 Aligned_cols=378 Identities=41% Similarity=0.724 Sum_probs=336.6
Q ss_pred eecCCCccccCCCCCccccEEeecCCcCCchhhchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhcCCCC
Q 012835 51 IFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPI 130 (455)
Q Consensus 51 I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~l~~~l~r~~~~~~~l~~~~~~i~~~e~~~R~~Y~e~i 130 (455)
|||||+++|++|+++|+|++|||||||||+++|+.||++|++|++.|++|....+.++++++++|+++|++||+||++++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~ 80 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI 80 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999999999999999433348999999999999999999999999
Q ss_pred C-CChHHHHHHHhHhhhHHHHHHhhcccCCCCCCCCC-ccchhhhHHHHHHHHhhhccCchHHHHHHHHHhhhcCCCCCc
Q 012835 131 R-FDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDP-IFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGN 208 (455)
Q Consensus 131 ~-~~~~ef~~MlllDgCFILe~~~~~~~~~~~~~~d~-~~~~~~~~~~v~~DllLLENQIPffVLe~L~~~~~~~~~~~~ 208 (455)
+ +++++|++||++|||||||+|+++.. ....+|| +++.+|....|++||+|||||||||||++||++.........
T Consensus 81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~~~~~ 158 (391)
T PF03140_consen 81 DDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSKSDVD 158 (391)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcccccCcc
Confidence 7 99999999999999999999998876 2345778 888999999999999999999999999999999984444456
Q ss_pred chHHHHHHHHhccccCCCCcccCccccccCcCCChHHHHHHhhcCCCCcc---cccCC-----CCCccccccHHHHHHcC
Q 012835 209 MDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSE---KYTEK-----NAGWEPFSCAAKINEAG 280 (455)
Q Consensus 209 ~~l~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~HLLdL~~~~~~p~~~~~---~~~~~-----~~~~~~~~sAteL~~aG 280 (455)
..+.+++.+||....+...... .....+++|||||+|.+++|+.... ...+. ...+..||||+||++||
T Consensus 159 ~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~eL~~aG 235 (391)
T PF03140_consen 159 ESLIDLVLKFFYKHWPSWPPDE---PISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATELREAG 235 (391)
T ss_pred chHHHHHHhHhccccccccccc---cccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHHHHhCC
Confidence 7899999999943322211111 1223479999999999999932211 00111 12457899999999999
Q ss_pred cEEeecCCCCCeeeEEecCceeecCceeeccchhHHHHhHHHHHhhCCCCCCchhhHHHHHHhhcCChhhHHHHhhCCcc
Q 012835 281 IEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGIL 360 (455)
Q Consensus 281 VkFk~~~~~~~llDV~F~~G~L~IP~l~idd~T~~llrNLiA~Eq~~~~~~~~vTsYv~fM~~LI~t~eDV~lL~~kGIi 360 (455)
|+||+++.+++++||+|++|+|+||+|.||++|+++||||||||||+...+.+|||||.||++||+|++||++|++||||
T Consensus 236 V~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~~kgIi 315 (391)
T PF03140_consen 236 VKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLRRKGII 315 (391)
T ss_pred cEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHHhCCeE
Confidence 99999984557999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhH-HHHHHhhccCCccC--CcchHHHHHHHHHHhhchhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 012835 361 NNWLDPDDA-TLYFNKLYNDTHVK--KFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFT 433 (455)
Q Consensus 361 ~n~lgsdee-a~lFn~L~~~v~~~--~~y~~~v~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~~ll~lt 433 (455)
+|++|+|+| |+|||+||++++++ ++||.+++++||+||++||++|+|+|+|+||+|||+++|++||+++|++|
T Consensus 316 ~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~lT 391 (391)
T PF03140_consen 316 VNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLLT 391 (391)
T ss_pred ecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHhC
Confidence 999999999 99999999999988 78999999999999999999999999999999999999999999999997
No 2
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=60.38 E-value=8.2 Score=28.31 Aligned_cols=33 Identities=12% Similarity=0.270 Sum_probs=26.0
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012835 410 MHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIV 442 (455)
Q Consensus 410 ~~~yf~npW~~is~~aA~~ll~lt~~QTv~sv~ 442 (455)
.+.+++|+...+|++.-+++++++++.-+++=+
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 467788999999888888888888887776544
No 3
>PF14770 TMEM18: Transmembrane protein 18
Probab=57.53 E-value=14 Score=32.27 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=37.3
Q ss_pred HHHHHHHHhhchhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012835 390 LCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIV 442 (455)
Q Consensus 390 v~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~~ll~lt~~QTv~sv~ 442 (455)
..+.+|++..+.|+ ..-+++||.+-=.++|++-++=+|+.+++..+..++
T Consensus 54 ~aE~iN~~~a~nW~---~Fs~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l~ 103 (123)
T PF14770_consen 54 CAEYINEYAARNWR---SFSKQNYFDSSGVFISVVFSAPLLLNCLIILVNWLY 103 (123)
T ss_pred HHHHHHHHHHHHHH---HHhhccCcCCCCeeehHHHHHhHHHHHHHHHHHHHH
Confidence 34889999988774 334679999988999998887777777666665544
No 4
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=51.65 E-value=17 Score=28.02 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 012835 418 WAIVSQIAATFLLLFTFLQTYY 439 (455)
Q Consensus 418 W~~is~~aA~~ll~lt~~QTv~ 439 (455)
|.++|.+.|+++|++-.+|+-.
T Consensus 2 WIiiSIvLai~lLI~l~~ns~l 23 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSEL 23 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHHH
Confidence 8999999999999999888753
No 5
>PRK10132 hypothetical protein; Provisional
Probab=51.03 E-value=15 Score=31.40 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=17.0
Q ss_pred cccccc-chhHHHHHHHHHHHHHHHHH
Q 012835 410 MHNYFG-TPWAIVSQIAATFLLLFTFL 435 (455)
Q Consensus 410 ~~~yf~-npW~~is~~aA~~ll~lt~~ 435 (455)
-.+|.. |||..+++.| .++|++.++
T Consensus 78 ~~~~V~~~Pw~svgiaa-gvG~llG~L 103 (108)
T PRK10132 78 ADTFVRERPWCSVGTAA-AVGIFIGAL 103 (108)
T ss_pred HHHHHHhCcHHHHHHHH-HHHHHHHHH
Confidence 345544 8999999654 466776665
No 6
>PRK10404 hypothetical protein; Provisional
Probab=50.69 E-value=15 Score=30.92 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 012835 416 TPWAIVSQIAATFLLLFTFL 435 (455)
Q Consensus 416 npW~~is~~aA~~ll~lt~~ 435 (455)
|||..+++.| .+.|++.++
T Consensus 79 ~Pw~avGiaa-gvGlllG~L 97 (101)
T PRK10404 79 KPWQGIGVGA-AVGLVLGLL 97 (101)
T ss_pred CcHHHHHHHH-HHHHHHHHH
Confidence 9999999654 477777665
No 7
>PHA02103 hypothetical protein
Probab=47.13 E-value=45 Score=28.30 Aligned_cols=72 Identities=19% Similarity=0.363 Sum_probs=48.0
Q ss_pred CCCeee--EEec----Cce--eecCceeeccchhHHHHhHHHHHhhCCCC------C---CchhhHHHHHHhhcCChhhH
Q 012835 289 YSTILD--IKFY----NGT--LDIPPLAIHETTETIFRNLISFEQCYPNC------D---PFITSYAKFMDNLIYTTKDV 351 (455)
Q Consensus 289 ~~~llD--V~F~----~G~--L~IP~l~idd~T~~llrNLiA~Eq~~~~~------~---~~vTsYv~fM~~LI~t~eDV 351 (455)
.++.+- |.|+ +.+ -+||.+..|..+.-+-|=.+-+|.|...- . .+|-.|-... -..+|-|
T Consensus 16 ~rn~f~v~~~fsdkf~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyryf---~ee~e~i 92 (135)
T PHA02103 16 DRNTFMVKMHFSDKFSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRYF---GEEAEGV 92 (135)
T ss_pred CcceEEEEEecccccCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHHh---cccchhh
Confidence 444443 4454 455 58999999999999999999999998542 1 2355555433 3456677
Q ss_pred HHHhhCCccccc
Q 012835 352 DLLTEKGILNNW 363 (455)
Q Consensus 352 ~lL~~kGIi~n~ 363 (455)
++-.+-||=.-|
T Consensus 93 e~we~ygve~l~ 104 (135)
T PHA02103 93 ELWEEYGVEGLC 104 (135)
T ss_pred hHHHHhCcceee
Confidence 777777764433
No 8
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=46.82 E-value=38 Score=27.98 Aligned_cols=57 Identities=26% Similarity=0.451 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCCC--cccHHHHHHHHH-------------HHHHHHHhhcCC---CCCCChHHHHHHHhHh
Q 012835 88 KIKLRYLQGLLRRWPNP--KEKLTELLEEIT-------------SVEGLARECYAE---PIRFDKEQFVRILVVD 144 (455)
Q Consensus 88 ~~K~~~l~~~l~r~~~~--~~~l~~~~~~i~-------------~~e~~~R~~Y~e---~i~~~~~ef~~MlllD 144 (455)
+.|.||+=+++....+. ...++.++..+- ..|..+|.|+.. .-+++.++|+..|..|
T Consensus 2 ~dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 46899998888773211 124555544433 357788999975 5578889999888765
No 9
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=41.95 E-value=25 Score=24.93 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012835 423 QIAATFLLLFTFLQTYYTIVGGVQKPIRG 451 (455)
Q Consensus 423 ~~aA~~ll~lt~~QTv~sv~~~~~~~~~~ 451 (455)
++.++.+.++.+-=|.|+++..+-|++++
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppSk~ 33 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPSKE 33 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCccc
Confidence 34455555555556679999999888765
No 10
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=39.63 E-value=27 Score=30.96 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=39.1
Q ss_pred ccccEEeec--CCcCCch---hhchHHHHHHHHHHHHHhcC-------CCCcccHHHHHHHHHHHHHHHHhhcC
Q 012835 66 FAPNGFSVG--PFHHGED---HLKLNEKIKLRYLQGLLRRW-------PNPKEKLTELLEEITSVEGLARECYA 127 (455)
Q Consensus 66 Y~P~~VSIG--PyHhg~~---~L~~mE~~K~~~l~~~l~r~-------~~~~~~l~~~~~~i~~~e~~~R~~Y~ 127 (455)
--|+|+||| ||..++. ++..++..|.-+-.+-++-. +.+=.++++++++|..-.+.|+..-+
T Consensus 65 v~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred ceeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 458999999 8887643 23344444444443333220 11123799999999998888887654
No 11
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=37.93 E-value=89 Score=23.30 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=26.1
Q ss_pred HHHHHHhhchhhhhhhhhccccccchhHHHHHHHHHHHH
Q 012835 392 KQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLL 430 (455)
Q Consensus 392 ~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~~ll 430 (455)
++|++|-++.||.- -|+-|+ ||..+.++.|+++.
T Consensus 10 ~~Vd~yL~a~~~~V----ER~PFr-P~~Ll~~li~Vv~g 43 (55)
T PF11293_consen 10 QRVDEYLQAGVNQV----ERKPFR-PWRLLIVLIVVVIG 43 (55)
T ss_pred HHHHHHHhCCCCcc----ccCCcc-hHHHHHHHHHHHHH
Confidence 67899999998844 466676 99988888777643
No 12
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=35.12 E-value=68 Score=24.54 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=26.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012835 412 NYFGTPWAIVSQIAATFLLLFTFLQTYYTIVG 443 (455)
Q Consensus 412 ~yf~npW~~is~~aA~~ll~lt~~QTv~sv~~ 443 (455)
.-++||-+.++++++++..+..+.+|+-+++.
T Consensus 29 ~llk~p~tai~~i~~~~~~~~~l~~tL~aMlg 60 (61)
T PF05421_consen 29 PLLKNPVTAIALIGILIGGFIFLYFTLRAMLG 60 (61)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34578999999999999999999998877653
No 13
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=34.45 E-value=30 Score=29.33 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=15.3
Q ss_pred ccccc-chhHHHHHHHHHHHHHHHH
Q 012835 411 HNYFG-TPWAIVSQIAATFLLLFTF 434 (455)
Q Consensus 411 ~~yf~-npW~~is~~aA~~ll~lt~ 434 (455)
-+|.. |||..|++-||+ .|++.+
T Consensus 76 D~yV~e~PWq~VGvaAaV-GlllGl 99 (104)
T COG4575 76 DDYVRENPWQGVGVAAAV-GLLLGL 99 (104)
T ss_pred HHHHHcCCchHHHHHHHH-HHHHHH
Confidence 45654 899999977654 455444
No 14
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=33.63 E-value=89 Score=25.82 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 012835 416 TPWAIVSQIAATFLLLFTFLQTYYTIVGGVQKP 448 (455)
Q Consensus 416 npW~~is~~aA~~ll~lt~~QTv~sv~~~~~~~ 448 (455)
.+|+++|.++=++..++++-=.+||.+.-|-.+
T Consensus 42 ~~wRalSii~FI~giil~lG~~i~s~ygr~C~~ 74 (92)
T PF05767_consen 42 YTWRALSIICFILGIILTLGIVIFSMYGRYCRP 74 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 489999998888888888888889999544443
No 15
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=32.87 E-value=2.4e+02 Score=22.74 Aligned_cols=81 Identities=14% Similarity=0.207 Sum_probs=55.1
Q ss_pred CcEEeecCCCCCeeeEEecC--ceeecCceeeccchhHHHHhHHHHHhhCCCCCCchhhHHHHHHhh-cCChhhHHHHhh
Q 012835 280 GIEFSRKRDYSTILDIKFYN--GTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNL-IYTTKDVDLLTE 356 (455)
Q Consensus 280 GVkFk~~~~~~~llDV~F~~--G~L~IP~l~idd~T~~llrNLiA~Eq~~~~~~~~vTsYv~fM~~L-I~t~eDV~lL~~ 356 (455)
||++.+..=..+-.+-+..+ +.+.+|=-.|..-.+.....+++-=+ . ..++|+..|...+ --+..+++.|.+
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~-~----g~f~s~~df~~R~~~i~~~~le~Li~ 75 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE-N----GPFKSLEDFIQRLPKINKRQLEALIK 75 (90)
T ss_dssp T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH-C----SS-SSHHHHHHHS-TS-HHHHHHHHH
T ss_pred CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh-c----CCCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 67777643122333555555 79999999999999999888887555 2 4478888898888 778999999999
Q ss_pred CCcccccCC
Q 012835 357 KGILNNWLD 365 (455)
Q Consensus 357 kGIi~n~lg 365 (455)
.|.+...=.
T Consensus 76 aGafd~~~~ 84 (90)
T PF14579_consen 76 AGAFDSFGK 84 (90)
T ss_dssp TTTTTTCSS
T ss_pred CCCccccCh
Confidence 999987533
No 16
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=32.56 E-value=50 Score=23.78 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012835 423 QIAATFLLLFTFLQTYYTIVGGVQKPIRG 451 (455)
Q Consensus 423 ~~aA~~ll~lt~~QTv~sv~~~~~~~~~~ 451 (455)
++.++++..+.+-=|-|+++..+-||++.
T Consensus 8 ~~~~i~i~~lL~~~TgyaiYtaFGppSk~ 36 (46)
T PRK13183 8 LSLAITILAILLALTGFGIYTAFGPPSKE 36 (46)
T ss_pred HHHHHHHHHHHHHHhhheeeeccCCcccc
Confidence 34445555555556789999999988764
No 17
>CHL00020 psbN photosystem II protein N
Probab=31.27 E-value=40 Score=23.88 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012835 422 SQIAATFLLLFTFLQTYYTIVGGVQKPIRG 451 (455)
Q Consensus 422 s~~aA~~ll~lt~~QTv~sv~~~~~~~~~~ 451 (455)
|++.++++.++.+-=|-|+++..+-||++.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppSk~ 33 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPSKQ 33 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCchhc
Confidence 345556666666666789999999988764
No 18
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=30.43 E-value=72 Score=24.94 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=30.3
Q ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHH-HHHHHHhccccCCCCC
Q 012835 405 TRYFYMHNYFGTPWAIVSQIAATFLLLFTFL-QTYYTIVGGVQKPIRG 451 (455)
Q Consensus 405 w~a~l~~~yf~npW~~is~~aA~~ll~lt~~-QTv~sv~~~~~~~~~~ 451 (455)
|...+.-.+-+.-|.+|++++++++-++|.+ +.+|-+....+..++|
T Consensus 20 wl~~lld~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~a~g 67 (68)
T PF04971_consen 20 WLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKAARG 67 (68)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhHhhcC
Confidence 4444444555667999999999887777754 5555555554444444
No 19
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=29.89 E-value=1.1e+02 Score=25.19 Aligned_cols=33 Identities=6% Similarity=0.037 Sum_probs=25.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 012835 415 GTPWAIVSQIAATFLLLFTFLQTYYTIVGGVQK 447 (455)
Q Consensus 415 ~npW~~is~~aA~~ll~lt~~QTv~sv~~~~~~ 447 (455)
.++|+++|.++=++..++++-=.+||.+.|..|
T Consensus 42 ~~~wRalSii~FIlG~vl~lGilifs~y~~C~~ 74 (91)
T PHA02680 42 DYVWRALSVTCFIVGAVLLLGLFVFSMYRKCSG 74 (91)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 347999888877777777777778999996554
No 20
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=29.30 E-value=98 Score=25.58 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=20.8
Q ss_pred cchhH---HHHHHHHHHHHHHHHHHHHHHHhcc
Q 012835 415 GTPWA---IVSQIAATFLLLFTFLQTYYTIVGG 444 (455)
Q Consensus 415 ~npW~---~is~~aA~~ll~lt~~QTv~sv~~~ 444 (455)
++||. ++-++-+++-++..++||+++.-..
T Consensus 13 rspWrls~I~d~Fwgi~~fI~lFF~Tl~~p~~~ 45 (91)
T PF10961_consen 13 RSPWRLSRITDFFWGIINFIVLFFQTLFSPDSS 45 (91)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 35673 5566667777777788888886544
No 21
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=26.78 E-value=22 Score=27.42 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=0.6
Q ss_pred cccchhHHHHHHHHHH-HHHHHHHHHHHHHhccccCCCCCC
Q 012835 413 YFGTPWAIVSQIAATF-LLLFTFLQTYYTIVGGVQKPIRGS 452 (455)
Q Consensus 413 yf~npW~~is~~aA~~-ll~lt~~QTv~sv~~~~~~~~~~~ 452 (455)
.|..|-...+++|+++ .++++++=-++-++.+.+++ .||
T Consensus 4 ~~~~~~vlaavIaG~Vvgll~ailLIlf~iyR~rkkd-EGS 43 (64)
T PF01034_consen 4 IFERSEVLAAVIAGGVVGLLFAILLILFLIYRMRKKD-EGS 43 (64)
T ss_dssp ---------------------------------S-------
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 4666767777777644 56666666677777775554 554
No 22
>KOG3942 consensus MIF4G domain-containing protein [Translation, ribosomal structure and biogenesis]
Probab=25.51 E-value=48 Score=33.50 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=64.3
Q ss_pred hHHHHHhhCCCCCC-chhhHHHHHHhhcCChhhHHHHhhCCc--ccccCCChhHHHHHHhhccCCcc----CCcchHHHH
Q 012835 319 NLISFEQCYPNCDP-FITSYAKFMDNLIYTTKDVDLLTEKGI--LNNWLDPDDATLYFNKLYNDTHV----KKFYYDDLC 391 (455)
Q Consensus 319 NLiA~Eq~~~~~~~-~vTsYv~fM~~LI~t~eDV~lL~~kGI--i~n~lgsdeea~lFn~L~~~v~~----~~~y~~~v~ 391 (455)
|.++++........ ..|+.-.+|..|||++-|=++|-+-|= +.+...+-.-+-+..+||.++.. +..+.+.++
T Consensus 131 ~~~ei~~si~n~sad~lt~~t~~mealin~a~~de~l~rc~~~~~r~avegg~ggl~v~klC~n~~~~~~~gt~f~~~Ll 210 (348)
T KOG3942|consen 131 KWVEIVTSICNISADLLTNLTMPMEALINPAYDDEMLFRCGPTIARQAVEGGGGGLFVCKLCTNLGSSWRNGTQFMDELL 210 (348)
T ss_pred hHHHHHHHHHHhHHHHhhccchHHHHHhCcchhHHHHHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhhccchHHHHHH
Confidence 57777765544433 368888999999999988888887664 33322211115566677776543 243577888
Q ss_pred HHHHHHhhchhhhhhhhhccccccchhHHHHHHHHH
Q 012835 392 KQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAAT 427 (455)
Q Consensus 392 ~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~ 427 (455)
.-+..+|.-| ..++...+.--|.+|+++.-+
T Consensus 211 n~lrq~f~~r-----~gl~s~~~~rw~~fisfltel 241 (348)
T KOG3942|consen 211 NLLRQGFLLR-----TGLSSLASCRWWRFISFLTEL 241 (348)
T ss_pred HHHHHhhccc-----hhccchhHHHHHHHHHHHHHH
Confidence 8888888765 233333444345555555433
No 23
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=25.45 E-value=54 Score=31.65 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=31.5
Q ss_pred CCCceeecCCCccccCCCCCccccEEeecCCcCCchhhchHHHHHHHHHHHHHhc
Q 012835 46 SSNCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRR 100 (455)
Q Consensus 46 ~~~~~I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~l~~~l~r 100 (455)
+..-||+++|-.+ .+|+||||-.++.-..||+|=..-+.....+
T Consensus 22 sp~sclv~~t~dl-----------hlalaP~yl~npl~~~i~ehld~~vl~y~~~ 65 (253)
T KOG4134|consen 22 SPESCLVCITTDL-----------HLALAPYYLANPLHALIEEHLDTKVLFYDSG 65 (253)
T ss_pred CCcceEEEeeehe-----------eeeecchhhcchhHHHHHHHhhHHHhhhccC
Confidence 4466999999775 6899999998775447877765555444444
No 24
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=24.91 E-value=87 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 012835 416 TPWAIVSQIAATFLLLFTFLQ 436 (455)
Q Consensus 416 npW~~is~~aA~~ll~lt~~Q 436 (455)
+||.++.++.|+++--++++.
T Consensus 4 ~~wlIIviVlgvIigNia~LK 24 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALK 24 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHH
Confidence 699999999888877776665
No 25
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=23.46 E-value=86 Score=26.43 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC
Q 012835 421 VSQIAATFLLLFTFLQTYYTIVGGVQK 447 (455)
Q Consensus 421 is~~aA~~ll~lt~~QTv~sv~~~~~~ 447 (455)
++-+.|++..++.+++|||+-++...+
T Consensus 29 LGSvLA~~Gvv~GLVEtVCsPFs~~~~ 55 (102)
T PF15103_consen 29 LGSVLAFFGVVIGLVETVCSPFSAASR 55 (102)
T ss_pred hhhHHHHHHHHHHHHHHHhCccccCCC
Confidence 666778999999999999997775443
No 26
>PHA03048 IMV membrane protein; Provisional
Probab=22.90 E-value=1.8e+02 Score=23.92 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 012835 416 TPWAIVSQIAATFLLLFTFLQTYYTIVGGVQKPI 449 (455)
Q Consensus 416 npW~~is~~aA~~ll~lt~~QTv~sv~~~~~~~~ 449 (455)
++|+++|.++=++..++++-=.+||.+.-|-.|+
T Consensus 41 ~~wRalsii~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 41 TVWRALSGIAFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 5788888888777788888888999999444443
No 27
>PHA02898 virion envelope protein; Provisional
Probab=21.83 E-value=1.8e+02 Score=23.97 Aligned_cols=34 Identities=6% Similarity=0.041 Sum_probs=23.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 012835 415 GTPWAIVSQIAATFLLLFTFLQTYYTIVGGVQKP 448 (455)
Q Consensus 415 ~npW~~is~~aA~~ll~lt~~QTv~sv~~~~~~~ 448 (455)
.++|+++|.++=++..++++-=.+|+.+.-|-.+
T Consensus 41 ~~~wRalSii~FIlgivl~lG~~ifs~y~r~C~~ 74 (92)
T PHA02898 41 DSALRSISIISFILAIILILGIIFFKGYNMFCGG 74 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 3478888877766666666666778888844333
No 28
>PF00473 CRF: Corticotropin-releasing factor family; InterPro: IPR000187 Corticotropin-releasing factor (CRF), urotensin-I, urocortin and sauvagine form a family of related neuropeptides in vertebrates. The family can be grouped into 2 separate paralogous lineages, with urotensin-I, urocortin and sauvagine in one group and CRF forming the other group. Urocortin and sauvagine appear to represent orthologues of fish urotensin-I in mammals and amphibians, respectively. The peptides have a variety of physiological effects on stress and anxiety, vasoregulation, thermoregulation, growth and metabolism, metamorphosis and reproduction in various species, and are all released as preprohormones []. CRF [] is a hormone found mainly in the paraventricular nucleus of the mammalian hypothalamus that regulates the release of corticotropin (ACTH) from the pituitary gland. From here, CRF is transported to the anterior pituitary, stimulating adrenocorticotropic hormone (ACTH) release via CRF type 1 receptors, thereby activating the hypothalamo-pituitary-adrenocortical axis (HPA) and thus glucocorticoid release. CRF is evolutionary related to a number of other active peptides. Urocortin acts in vitro to stimulate the secretion of adrenocorticotropic hormone. Urotensin is found in the teleost caudal neurosecretory system and may play a role in osmoregulation and as a corticotropin-releasing factor. Urotensin-I is released from the urophysis of fish, and produces ACTH and subsequent cortisol release in vivo. The nonhormonal portion of the prohormone is thought to be the urotensin binding protein (urophysin). Sauvagine (P01144 from SWISSPROT), isolated from frog skin, has a potent hypotensive and diuretic effect.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3EHU_C 3EHT_B 2RMF_A 3N96_G.
Probab=21.29 E-value=37 Score=23.60 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=16.1
Q ss_pred cCceeeccchhHHHHhHHHHHhh
Q 012835 304 IPPLAIHETTETIFRNLISFEQC 326 (455)
Q Consensus 304 IP~l~idd~T~~llrNLiA~Eq~ 326 (455)
.|+|.|| .|-.+||+++..|-.
T Consensus 1 ~PslSId-l~~~vLR~~l~~~~a 22 (39)
T PF00473_consen 1 MPSLSID-LTFHVLRQRLELERA 22 (39)
T ss_dssp ---HHHH-HHHHHHHHHHHHHHH
T ss_pred CCCcccc-cHHHHHHHHHHHHHH
Confidence 3888888 699999999988753
No 29
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=20.30 E-value=1e+02 Score=25.22 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=24.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012835 415 GTPWAIVSQIAATFLLLFTFLQTYYTIVGG 444 (455)
Q Consensus 415 ~npW~~is~~aA~~ll~lt~~QTv~sv~~~ 444 (455)
.+-|+-||+++|+-.++++.+.|+..-...
T Consensus 13 ~~~WkkiS~~va~P~v~l~~~n~y~~~~eh 42 (86)
T cd00925 13 SELWKKISFYVALPAVALCMLNAYLKHKEH 42 (86)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhhcc
Confidence 346889999999999999999988765443
Done!