Query 012835
Match_columns 455
No_of_seqs 130 out of 678
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l27_B Peptide agonist; CRF, E 39.0 10 0.00034 25.0 0.9 20 305-325 1-20 (38)
2 2rmf_A Urocortin, HUCN1; CRF l 35.2 8.2 0.00028 25.7 0.1 19 305-324 3-21 (40)
3 3ism_C CG4930; endonuclease, e 19.1 63 0.0021 31.4 2.9 66 346-411 217-301 (359)
4 3s8f_C Cytochrome C oxidase po 15.5 1.2E+02 0.004 19.6 2.6 26 421-446 6-31 (34)
5 2kru_A Light-independent proto 15.0 47 0.0016 24.5 0.7 14 186-199 15-28 (63)
6 1go9_A Corticotropin releasing 14.1 12 0.00041 25.2 -2.4 19 305-324 4-22 (42)
7 1v54_G Cytochrome C oxidase po 13.2 1.2E+02 0.0041 23.6 2.7 25 416-440 14-38 (85)
8 2y69_G Cytochrome C oxidase po 10.5 1.6E+02 0.0056 23.5 2.7 25 416-440 26-50 (97)
9 2l09_A ASR4154 protein; proto- 9.8 48 0.0016 24.4 -0.6 14 186-199 14-27 (62)
10 2x4i_A CAG38848, uncharacteriz 9.6 2.1E+02 0.0072 23.5 3.1 32 347-378 28-59 (114)
No 1
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=39.00 E-value=10 Score=24.99 Aligned_cols=20 Identities=20% Similarity=0.630 Sum_probs=16.6
Q ss_pred CceeeccchhHHHHhHHHHHh
Q 012835 305 PPLAIHETTETIFRNLISFEQ 325 (455)
Q Consensus 305 P~l~idd~T~~llrNLiA~Eq 325 (455)
||+.|| -|..+|||++-...
T Consensus 1 PPiSlD-LTFhlLR~m~emar 20 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAK 20 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHH
Confidence 788887 69999999986644
No 2
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=35.19 E-value=8.2 Score=25.68 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=16.0
Q ss_pred CceeeccchhHHHHhHHHHH
Q 012835 305 PPLAIHETTETIFRNLISFE 324 (455)
Q Consensus 305 P~l~idd~T~~llrNLiA~E 324 (455)
||+.|| -|..+||||+-..
T Consensus 3 PpiSiD-LTFHlLR~miema 21 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLLELA 21 (40)
T ss_dssp CCHHHH-HHHHHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHHHHH
Confidence 888887 6999999998654
No 3
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=19.12 E-value=63 Score=31.40 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=45.2
Q ss_pred CChhhHHHHhhCCcccccCCChhH-HHHHHhhccCC-------ccC-Cc---chHHHHHHHHHHhhc-----h--hhhhh
Q 012835 346 YTTKDVDLLTEKGILNNWLDPDDA-TLYFNKLYNDT-------HVK-KF---YYDDLCKQVNEYCRS-----W--WNKTR 406 (455)
Q Consensus 346 ~t~eDV~lL~~kGIi~n~lgsdee-a~lFn~L~~~v-------~~~-~~---y~~~v~~~ln~~~~~-----r--~~~w~ 406 (455)
.-.+|-+.|-++||+.+-.-.|+- -.-|+++|+.. .++ +. -|.++.+-|..|..- + .|.|+
T Consensus 217 ~PleDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~fygP~~YNeWI 296 (359)
T 3ism_C 217 NPLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWI 296 (359)
T ss_dssp --CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred CcHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccCCchHhHHH
Confidence 345788888899999998888988 88888888753 233 22 288899999988543 2 47888
Q ss_pred hhhcc
Q 012835 407 YFYMH 411 (455)
Q Consensus 407 a~l~~ 411 (455)
..||.
T Consensus 297 vklrd 301 (359)
T 3ism_C 297 FNLRD 301 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 4
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=15.48 E-value=1.2e+02 Score=19.59 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 012835 421 VSQIAATFLLLFTFLQTYYTIVGGVQ 446 (455)
Q Consensus 421 is~~aA~~ll~lt~~QTv~sv~~~~~ 446 (455)
.+++|+++++-+.++=+++.++..|-
T Consensus 6 ~GTl~~V~ilg~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 6 KGALAVILVLTLTILVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceehHHHHHHHHHHHHHHHHHeeee
Confidence 35677888888888888888876553
No 5
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=14.99 E-value=47 Score=24.54 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=10.3
Q ss_pred cCchHHHHHHHHHh
Q 012835 186 NQIPWFVLERLFVL 199 (455)
Q Consensus 186 NQIPffVLe~L~~~ 199 (455)
++|||||=.++=+-
T Consensus 15 kkIP~FVR~kvrr~ 28 (63)
T 2kru_A 15 GKVPFFVRKKVRKN 28 (63)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 56999998766543
No 6
>1go9_A Corticotropin releasing hormone; synthetic analogues, solid phase synthesis, solutions structure; HET: DPN AIB; NMR {Synthetic} SCOP: j.16.1.1 PDB: 1goe_A* 2rme_A* 2rmd_A* 2rmi_A* 2jnd_B*
Probab=14.07 E-value=12 Score=25.15 Aligned_cols=19 Identities=21% Similarity=0.558 Sum_probs=14.4
Q ss_pred CceeeccchhHHHHhHHHHH
Q 012835 305 PPLAIHETTETIFRNLISFE 324 (455)
Q Consensus 305 P~l~idd~T~~llrNLiA~E 324 (455)
||+.|| -|..+||||+-..
T Consensus 4 PPiSiD-LTFHlLR~mlema 22 (42)
T 1go9_A 4 PPISLD-LTFHLAREVLEMA 22 (42)
T ss_dssp CCHHHH-HHHHC-CCTTHHH
T ss_pred CCcchh-hHHHHHHHHHHHH
Confidence 788887 6899999997654
No 7
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=13.18 E-value=1.2e+02 Score=23.65 Aligned_cols=25 Identities=12% Similarity=0.196 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 012835 416 TPWAIVSQIAATFLLLFTFLQTYYT 440 (455)
Q Consensus 416 npW~~is~~aA~~ll~lt~~QTv~s 440 (455)
+-|+-||+++|+=+++++.+.++..
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~~ 38 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWLH 38 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999988888888887643
No 8
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=10.46 E-value=1.6e+02 Score=23.49 Aligned_cols=25 Identities=12% Similarity=0.196 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 012835 416 TPWAIVSQIAATFLLLFTFLQTYYT 440 (455)
Q Consensus 416 npW~~is~~aA~~ll~lt~~QTv~s 440 (455)
+-|+-||+++|+=+++++.+.++..
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~~ 50 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWLH 50 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999988888888887643
No 9
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=9.78 E-value=48 Score=24.39 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=10.1
Q ss_pred cCchHHHHHHHHHh
Q 012835 186 NQIPWFVLERLFVL 199 (455)
Q Consensus 186 NQIPffVLe~L~~~ 199 (455)
++|||||=.++=+-
T Consensus 14 kkIP~FVR~kvrr~ 27 (62)
T 2l09_A 14 KNIPFFARSQAKAR 27 (62)
T ss_dssp HTSCGGGHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 46999997766544
No 10
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=9.63 E-value=2.1e+02 Score=23.54 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=26.3
Q ss_pred ChhhHHHHhhCCcccccCCChhHHHHHHhhcc
Q 012835 347 TTKDVDLLTEKGILNNWLDPDDATLYFNKLYN 378 (455)
Q Consensus 347 t~eDV~lL~~kGIi~n~lgsdeea~lFn~L~~ 378 (455)
+.++++.+..++=+++..|.+..|++.++||.
T Consensus 28 s~~EAk~~v~~~~~iSaIGH~sTA~lls~Llg 59 (114)
T 2x4i_A 28 DRLEFCENIDNEDIINSIGHDSTIQLINSLCG 59 (114)
T ss_dssp CHHHHHHHHCCTTEEECCCCHHHHHHHHHHHC
T ss_pred CHHHHHHHhcccCeEEeeccHHHHHHHHHHhC
Confidence 35677777777778888998877999999986
Done!