Query 012835
Match_columns 455
No_of_seqs 130 out of 678
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 17:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012835.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012835hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 33.9 29 0.0021 26.0 5.1 56 88-143 3-78 (97)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 21.9 33 0.0024 19.0 2.4 21 429-449 5-25 (27)
3 d1v54g_ f.23.2.1 (G:) Mitochon 18.4 35 0.0025 24.8 2.7 23 417-439 15-37 (84)
4 d2i4ra1 c.149.1.1 (A:4-79) V-t 14.1 31 0.0022 24.4 1.4 24 51-74 53-76 (76)
5 d1xmec1 f.23.9.1 (C:2-34) Bact 12.7 98 0.0072 17.7 3.1 22 424-445 8-29 (33)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 7.5 1E+02 0.0074 28.8 2.9 25 409-433 401-425 (472)
7 d1nrjb_ c.37.1.8 (B:) Signal r 6.9 81 0.0059 25.0 1.7 19 65-83 1-19 (209)
8 d1awca_ a.4.5.21 (A:) GA bindi 6.8 2.3E+02 0.017 21.1 4.2 62 364-428 31-95 (110)
9 d1pzra_ a.38.2.1 (A:) Erythron 6.8 83 0.006 20.4 1.2 32 86-123 28-59 (60)
10 d2outa1 a.140.3.2 (A:94-131) U 6.2 77 0.0056 18.6 0.7 14 274-287 6-19 (38)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.95 E-value=29 Score=25.95 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCC--cccHHHHHHHHH---------------HHHHHHHhhcC---CCCCCChHHHHHHHhH
Q 012835 88 KIKLRYLQGLLRRWPNP--KEKLTELLEEIT---------------SVEGLARECYA---EPIRFDKEQFVRILVV 143 (455)
Q Consensus 88 ~~K~~~l~~~l~r~~~~--~~~l~~~~~~i~---------------~~e~~~R~~Y~---e~i~~~~~ef~~Mlll 143 (455)
+.|.||+=+.+....+. ...++.++..+- ..|..+|.|+. ..-+.+.++|+..|..
T Consensus 3 ~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~~ 78 (97)
T d1eg3a2 3 EDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRL 78 (97)
T ss_dssp HHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHHh
Confidence 46999998888773211 124555555442 24778888884 2335777777766653
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.93 E-value=33 Score=18.96 Aligned_cols=21 Identities=19% Similarity=0.331 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhccccCCC
Q 012835 429 LLLFTFLQTYYTIVGGVQKPI 449 (455)
Q Consensus 429 ll~lt~~QTv~sv~~~~~~~~ 449 (455)
+.+.|+...+|+.++-|++|+
T Consensus 5 li~~tl~glf~aayqqykrpn 25 (27)
T d2e74g1 5 LVFATLGGLFYAAYQQYKRPN 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC
T ss_pred ehHHHHHHHHHHHHHHhcCCC
Confidence 345677777888888888774
No 3
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.35 E-value=35 Score=24.82 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 012835 417 PWAIVSQIAATFLLLFTFLQTYY 439 (455)
Q Consensus 417 pW~~is~~aA~~ll~lt~~QTv~ 439 (455)
-|+.||+++|+-.++++.+.++.
T Consensus 15 lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999998888763
No 4
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=14.06 E-value=31 Score=24.41 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.5
Q ss_pred eecCCCccccCCCCCccccEEeec
Q 012835 51 IFRNPVILSCHNQKAFAPNGFSVG 74 (455)
Q Consensus 51 I~rVP~~lr~~n~~aY~P~~VSIG 74 (455)
.-++|+.+++.-.+.-.|.++.||
T Consensus 53 a~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 53 LKKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp STTSCHHHHTTTTTCCSSEEEEEC
T ss_pred HHHhhHHHHHHHhcCCCCEEEecC
Confidence 347789998888888999999998
No 5
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=12.67 E-value=98 Score=17.70 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 012835 424 IAATFLLLFTFLQTYYTIVGGV 445 (455)
Q Consensus 424 ~aA~~ll~lt~~QTv~sv~~~~ 445 (455)
++-+.+|.++++-.++.|+..+
T Consensus 8 l~vi~il~l~ilvfw~gv~avf 29 (33)
T d1xmec1 8 LAVILVLTLTILVFWLGVYAVF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666566665543
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=7.52 E-value=1e+02 Score=28.81 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=18.3
Q ss_pred hccccccchhHHHHHHHHHHHHHHH
Q 012835 409 YMHNYFGTPWAIVSQIAATFLLLFT 433 (455)
Q Consensus 409 l~~~yf~npW~~is~~aA~~ll~lt 433 (455)
+++..|+|+|.+++++.++++.++.
T Consensus 401 ~~~~~~~N~~l~~av~i~~~l~~~i 425 (472)
T d1wpga4 401 MRMPPWVNIWLLGSICLSMSLHFLI 425 (472)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHHHHH
T ss_pred hhcCccccHHHHHHHHHHHHHHHHH
Confidence 4667789999999888776654433
No 7
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.92 E-value=81 Score=25.01 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=17.3
Q ss_pred CccccEEeecCCcCCchhh
Q 012835 65 AFAPNGFSVGPFHHGEDHL 83 (455)
Q Consensus 65 aY~P~~VSIGPyHhg~~~L 83 (455)
.|+|.++=|||-..|+..|
T Consensus 1 ~~~p~V~lvG~~n~GKTSL 19 (209)
T d1nrjb_ 1 SYQPSIIIAGPQNSGKTSL 19 (209)
T ss_dssp CCCCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4999999999999998876
No 8
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.84 E-value=2.3e+02 Score=21.13 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=42.9
Q ss_pred CCChhH-HHHHHhhccCCccCCcchHHHHHHHHHHhhchhh-hhh-hhhccccccchhHHHHHHHHHH
Q 012835 364 LDPDDA-TLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWN-KTR-YFYMHNYFGTPWAIVSQIAATF 428 (455)
Q Consensus 364 lgsdee-a~lFn~L~~~v~~~~~y~~~v~~~ln~~~~~r~~-~w~-a~l~~~yf~npW~~is~~aA~~ 428 (455)
+-+.++ |+++-.--+.- +-+ |.++.+.+..||++.-- +-. ..|...|..+||.+++.-++-+
T Consensus 31 l~d~e~VA~lWG~~Knk~--~M~-YeklSRaLRyYY~~~il~Kv~g~rl~Y~F~~d~~~~~~~~~~~l 95 (110)
T d1awca_ 31 LNQPELVAQKWGQRKNKP--TMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAEL 95 (110)
T ss_dssp CSSHHHHHHHHHHHHTCT--TCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHHHH
T ss_pred eCCHHHHHHHHHHhhCCC--ccc-HHHHHHHHHHHHhcccEEecCCcEEEEeccCCHHHHhCCCHHHH
Confidence 446677 99996443322 246 89999999999998742 222 3467778889999887665544
No 9
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=6.80 E-value=83 Score=20.37 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHH
Q 012835 86 NEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLAR 123 (455)
Q Consensus 86 mE~~K~~~l~~~l~r~~~~~~~l~~~~~~i~~~e~~~R 123 (455)
|-+.|+| +.++| +...++.....+++.|.+|+
T Consensus 28 mtedkLR---RYLkR---Tv~eLdsVtaRLrEvEyRAg 59 (60)
T d1pzra_ 28 MTEEKLR---RYLKR---TVTELDSVTARLREVEHRAG 59 (60)
T ss_dssp SHHHHHH---HHHHH---HHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHH---HHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 4455543 34566 55567778888888887765
No 10
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=6.19 E-value=77 Score=18.56 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=11.5
Q ss_pred HHHHHcCcEEeecC
Q 012835 274 AKINEAGIEFSRKR 287 (455)
Q Consensus 274 teL~~aGVkFk~~~ 287 (455)
.+|-+.||.||.+.
T Consensus 6 aqltergitfkqsa 19 (38)
T d2outa1 6 AQLTERGITFKQSA 19 (38)
T ss_dssp HHHHHHTCCCSSSC
T ss_pred HHHHHcCceeeccc
Confidence 47889999999765
Done!