BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012836
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 39 AFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
A + PLH+A+ GHV+ V ++ + A + + GF+P+H+A+ G++ V L++
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 99 FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF 158
D + G TPLH A +D+V ++L G + T LH+A K NQ
Sbjct: 168 RDAH-PNAAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 225
Query: 159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA 218
EV R+L+ + E++ QG T LHLA + ++V LLLS AN + G
Sbjct: 226 EVARSLLQYGGSANAESV------QGVTPLHLAAQEGHAEMVALLLSKQANGNLG----- 274
Query: 219 TNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
N SGLT L ++ ++ G + ++ G M
Sbjct: 275 -NKSGLTPLHLV----AQEGHVPVADVLIKHGVM 303
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 19/186 (10%)
Query: 46 PLHVASAYGHVDFVKEIIR--LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
PLHVAS GH+ VK +++ P+ + N +P+HMA+ G +V + L++ K+
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
+ + + +TPLH AA G ++V +L + T LH+A + E V A
Sbjct: 74 -NAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLA 131
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG 223
L++ KE K+G T LH+A + +V ELLL A+ NA +G
Sbjct: 132 LLE------KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP------NAAGKNG 179
Query: 224 LTALDV 229
LT L V
Sbjct: 180 LTPLHV 185
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 10/174 (5%)
Query: 36 HTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRG 95
H+PA+ + PLH+A+ V+ + +++ E Q G +P+H+A+ G ++V
Sbjct: 206 HSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAEMV-A 262
Query: 96 LMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKN 155
L+ Q +L TPLH A +G V V +++L +G + + T LH+A
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPV-ADVLIKHGVMVDATTRMGYTPLHVASHY 321
Query: 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
++V+ L+ DV N K K G + LH A + +V LLL +GA+
Sbjct: 322 GNIKLVKFLLQHQADV------NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
TPLH A+ G + +V +L G +V+ ET LH+A + EV + L ++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYL------LQ 68
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
+ +N K K T LH A +V+LLL + AN
Sbjct: 69 NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 76.6 bits (187), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 14/136 (10%)
Query: 76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYG 135
+G +P+H+A+ NG ++VV+ L++ + + + +TPLH AA G ++VV +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLL---- 55
Query: 136 ECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT 192
E DV+ + + T LHLA +N EVV+ L++ DV N KDK G T LHLA
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------NAKDKNGRTPLHLAA 109
Query: 193 WKRECQVVELLLSHGA 208
+VV+LLL GA
Sbjct: 110 RNGHLEVVKLLLEAGA 125
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 74/143 (51%), Gaps = 23/143 (16%)
Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWI 168
+TPLH AA G ++VV +L E DV+ + + T LHLA +N EVV+ L++
Sbjct: 3 RTPLHLAARNGHLEVVKLLL----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 169 RDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228
DV N KDK G T LHLA +VV+LLL GA +VNA + +G T L
Sbjct: 59 ADV------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA------DVNAKDKNGRTPLH 106
Query: 229 VLLSFPSEAGDREIEEIFWSAGA 251
+ + G E+ ++ AGA
Sbjct: 107 L----AARNGHLEVVKLLLEAGA 125
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PLH+A+ GH++ VK ++ D + +++G +P+H+A+ NG ++VV+ L++ + +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-N 62
Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEVVR 162
+ +TPLH AA G ++VV +L E DV+ + + T LHLA +N EVV+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLL----EAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 163 ALVD 166
L++
Sbjct: 119 LLLE 122
Score = 32.0 bits (71), Expect = 0.64, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 184 GNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIE 243
G T LHLA +VV+LLL GA +VNA + +G T L + + G E+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA------DVNAKDKNGRTPLHL----AARNGHLEVV 51
Query: 244 EIFWSAGA 251
++ AGA
Sbjct: 52 KLLLEAGA 59
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 24/166 (14%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ GQ D VR LM + + + + TPLH AA +G +++V +L A DV+
Sbjct: 21 AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA----GADVNA 75
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
+ + T LHLA + E+V L+ DV N KDK G T LHLA + ++V
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIV 129
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
E+LL GA+ VNA + G TA D+ + + G+ ++ EI
Sbjct: 130 EVLLKAGAD------VNAQDKFGKTAFDISI----DNGNEDLAEIL 165
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+ G D V+ ++ D + ++DG++P+H+A+ G +++V L+K +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEV 160
+ + + TPLH AA +G +++V +L A DV+ + + T LHLA + E+
Sbjct: 74 -NAKDKDGYTPLHLAAREGHLEIVEVLLKA----GADVNAKDKDGYTPLHLAAREGHLEI 128
Query: 161 VRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
V L+ DV N +DK G TA ++ + E+L
Sbjct: 129 VEVLLKAGADV------NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LHLA + E+V L+ DV N KDK G T LHLA + ++VE+LL
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPE 266
GA+ VNA + G T L + G EI E+ AGA + + +
Sbjct: 103 GAD------VNAKDKDGYTP----LHLAAREGHLEIVEVLLKAGA---------DVNAQD 143
Query: 267 PHGQTSVDNCIST 279
G+T+ D I
Sbjct: 144 KFGKTAFDISIDN 156
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 152 AVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS 211
A + Q + VR L+ DV N KDK G T LHLA + ++VE+LL GA+
Sbjct: 21 AARAGQDDEVRILMANGADV------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 72
Query: 212 GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
VNA + G T L + G EI E+ AGA
Sbjct: 73 ----VNAKDKDGYTP----LHLAAREGHLEIVEVLLKAGA 104
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 79/165 (47%), Gaps = 22/165 (13%)
Query: 84 ASANGQIDVVRGLMK--FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV 141
A+ GQ D VR LM D G TPLH AA G +++V E+L YG
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLG---HTPLHLAAKTGHLEIV-EVLLKYGADVNAW 76
Query: 142 SVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201
T LHLA N E+V L+ DV N KD +G T LHLA + ++VE
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADV------NAKDYEGFTPLHLAAYDGHLEIVE 130
Query: 202 LLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
+LL +GA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 131 VLLKYGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 11/163 (6%)
Query: 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIR 64
+ + ++L+ AA G ++ L + T PLH+A+ GH++ V+ +++
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHT--PLHLAAKTGHLEIVEVLLK 68
Query: 65 LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV 124
D N G +P+H+A+ NG +++V L+K + + E TPLH AA G +
Sbjct: 69 YGADVNAWDNY-GATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDGHL 126
Query: 125 DVVSEMLSAYGECAEDVSVQR---ETVLHLAVKNNQFEVVRAL 164
++V E+L YG DV+ Q +T +++ N ++ L
Sbjct: 127 EIV-EVLLKYG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N D G+T LHLA ++VE+LL +GA +VNA ++ G T L ++
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA------DVNAWDNYGATP----LHLAAD 89
Query: 237 AGDREIEEIFWSAGA 251
G EI E+ GA
Sbjct: 90 NGHLEIVEVLLKHGA 104
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ GQ D VR LM + + KTPLH AAIKG +++V E+L +G
Sbjct: 21 AARAGQDDEVRILMANGAD-VNAEDDSGKTPLHLAAIKGHLEIV-EVLLKHGADVNAADK 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
+T LHLA E+V L+ DV N D G T LHLA ++VE+L
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGADV------NATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
L +GA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 133 LKYGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 108 GPERKTPLHFAAIKGRVDVVSEMLSAYGEC-AEDVSVQRETVLHLAVKNNQFEVVRALVD 166
G + L AA G+ D V +++ + AED S +T LHLA E+V L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAEDDS--GKTPLHLAAIKGHLEIVEVLLK 68
Query: 167 WIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTA 226
DV N DK G+T LHLA ++VE+LL +GA +VNAT+ G T
Sbjct: 69 HGADV------NAADKMGDTPLHLAALYGHLEIVEVLLKNGA------DVNATDTYGFTP 116
Query: 227 LDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCIST 279
L ++AG EI E+ GA + + + G+T+ D I
Sbjct: 117 ----LHLAADAGHLEIVEVLLKYGA---------DVNAQDKFGKTAFDISIDN 156
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF--DQ 101
G L A+ G D V+ ++ D E + G +P+H+A+ G +++V L+K D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHGADV 73
Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161
G TPLH AA+ G +++V E+L G T LHLA E+V
Sbjct: 74 NAADKMGD---TPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIV 129
Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
L+ + DV N +DK G TA ++ + E+L
Sbjct: 130 EVLLKYGADV------NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK--F 99
S PLH+A+ GH++ V+ +++ D ++ G +P+H+A+ G +++V L+K
Sbjct: 46 SGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 100 DQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR---ETVLHLAVKNN 156
D G TPLH AA G +++V E+L YG DV+ Q +T +++ N
Sbjct: 105 DVNATDTYGF---TPLHLAADAGHLEIV-EVLLKYG---ADVNAQDKFGKTAFDISIDNG 157
Query: 157 QFEVVRAL 164
++ L
Sbjct: 158 NEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 24/169 (14%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ GQ D VR LM + + + + TPLH AA +G +++V +L A DV+
Sbjct: 9 AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA----GADVNA 63
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
+ + T LHLA + E+V L+ DV N KDK G T LHLA + ++V
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIV 117
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSA 249
E+LL GA+ VNA + G T D+ + + G+ +I E+ A
Sbjct: 118 EVLLKAGAD------VNAQDKFGKTPFDLAI----DNGNEDIAEVLQKA 156
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 14/133 (10%)
Query: 74 NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA 133
++DG++P+H+A+ G +++V L+K + + + + TPLH AA +G +++V +L A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 134 YGECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHL 190
DV+ + + T LHLA + E+V L+ DV N +DK G T L
Sbjct: 91 ----GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV------NAQDKFGKTPFDL 140
Query: 191 ATWKRECQVVELL 203
A + E+L
Sbjct: 141 AIDNGNEDIAEVL 153
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LHLA + E+V L+ DV N KDK G T LHLA + ++VE+LL
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
GA+ VNA + G T L + G EI E+ AGA
Sbjct: 91 GAD------VNAKDKDGYTP----LHLAAREGHLEIVEVLLKAGA 125
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 152 AVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS 211
A + Q + VR L+ DV N KDK G T LHLA + ++VE+LL GA+
Sbjct: 9 AARAGQDDEVRILMANGADV------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 60
Query: 212 GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
VNA + G T L + G EI E+ AGA
Sbjct: 61 ----VNAKDKDGYTP----LHLAAREGHLEIVEVLLKAGA 92
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAY 134
QD + A+A GQ D VR LM + TPLH AA G++++V +L
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGAD-VNATDDNGLTPLHLAAANGQLEIVEVLL--- 59
Query: 135 GECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
+ DV+ T LHLA + E+V L+ DV N D+ G T LHLA
Sbjct: 60 -KNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV------NAYDRAGWTPLHLA 112
Query: 192 TWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
+ ++VE+LL HGA +VNA + GLTA D+ ++ G ++ EI
Sbjct: 113 ALSGQLEIVEVLLKHGA------DVNAQDALGLTAFDISIN----QGQEDLAEIL 157
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+A G D V+ ++ D + +G +P+H+A+ANGQ+++V L+K
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNGAD- 64
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
+ TPLH AA G +++V E+L +G T LHLA + Q E+V
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIV-EVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
L+ DV N +D G TA ++ + + + E+L
Sbjct: 124 LLKHGADV------NAQDALGLTAFDISINQGQEDLAEIL 157
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 108 GPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW 167
G + L AA G+ D V +L A G T LHLA N Q E+V L+
Sbjct: 3 GQDLGKKLLEAAAAGQDDEV-RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN 61
Query: 168 IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
DV N D G T LHLA + ++VE+LL HGA +VNA + +G T
Sbjct: 62 GADV------NASDSAGITPLHLAAYDGHLEIVEVLLKHGA------DVNAYDRAGWTP- 108
Query: 228 DVLLSFPSEAGDREIEEIFWSAGA 251
L + +G EI E+ GA
Sbjct: 109 ---LHLAALSGQLEIVEVLLKHGA 129
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ GQ D VR LM + + + TPLH AA G ++V E+L +G
Sbjct: 21 AARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDT 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
T LHLA N E+V L+ + DV N +D G T LHLA + ++VE+L
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLLKYGADV------NAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
L HGA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 133 LKHGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 11/108 (10%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PLH+A+ GH + V+ +++ D + DG++P+H+A+ NG +++V L+K+ + +
Sbjct: 50 PLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADNGHLEIVEVLLKYGADV-N 107
Query: 106 LQGPERKTPLHFAAIKGRVDVVSEML---------SAYGECAEDVSVQ 144
Q TPLH AA +G +++V +L +G+ A D+S+
Sbjct: 108 AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+ G D V+ ++ D +Q G +P+H+A+ G ++V L+K +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQ-GSTPLHLAAWIGHPEIVEVLLKHGADV 73
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEV 160
+ + + TPLH AA G +++V E+L YG DV+ Q T LHLA E+
Sbjct: 74 -NARDTDGWTPLHLAADNGHLEIV-EVLLKYG---ADVNAQDAYGLTPLHLAADRGHLEI 128
Query: 161 VRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
V L+ DV N +DK G TA ++ + E+L
Sbjct: 129 VEVLLKHGADV------NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N D QG+T LHLA W ++VE+LL HGA +VNA + G T L ++
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA------DVNARDTDGWTP----LHLAAD 89
Query: 237 AGDREIEEIFWSAGA-MRMRD-LTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFK 294
G EI E+ GA + +D L+P+ G + E L+ D+ K
Sbjct: 90 NGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEI-----VEVLLKHGADVNAQDK 144
Query: 295 FKK 297
F K
Sbjct: 145 FGK 147
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGE-CAEDVS 142
A+ NG D V+ L++ + + + KTPLH AA G +VV +LS + A+D
Sbjct: 11 AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 143 VQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL 202
+ T LHLA +N EVV+ L+ D N KD G T LHLA +VV+L
Sbjct: 70 GK--TPLHLAAENGHKEVVKLLLSQGADP------NAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 203 LLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
LLS GA+ N ++ G T LD E G+ E+ ++ G
Sbjct: 122 LLSQGADP------NTSDSDGRTPLD----LAREHGNEEVVKLLEKQGG 160
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 50 ASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP 109
A+ G+ D VK+++ D + DG +P+H+A+ NG +VV+ L+ + +
Sbjct: 11 AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDS 68
Query: 110 ERKTPLHFAAIKGRVDVVSEMLSAYGE-CAEDVSVQRETVLHLAVKNNQFEVVRALVDWI 168
+ KTPLH AA G +VV +LS + A+D + T LHLA +N EVV+ L+
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK--TPLHLAAENGHKEVVKLLLSQG 126
Query: 169 RDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
D N D G T L LA +VV+LL G
Sbjct: 127 ADP------NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ GQ D VR LM + +TPLH AA G +++V E+L G V
Sbjct: 9 AARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDT 66
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
T LHLA E+V L+ + DV N KD G T L+LA + ++VE+L
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADV------NAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
L HGA +VNA + G TA D+ + G+ ++ EI
Sbjct: 121 LKHGA------DVNAQDKFGKTAFDISIDI----GNEDLAEIL 153
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 11/108 (10%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PLH+A+A GH++ V+ ++R D V+ +G +P+H+A++ G +++V L+K+ +
Sbjct: 38 PLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-VN 95
Query: 106 LQGPERKTPLHFAAIKGRVDVVSEML---------SAYGECAEDVSVQ 144
+ TPL+ AA G +++V +L +G+ A D+S+
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 143
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ NG D V+ L++ + + + +TPLH+AA +G ++V ++S + S
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
R T LH A K E+V+ L+ DV N KD G T LH A + ++V+LL
Sbjct: 70 GR-TPLHYAAKEGHKEIVKLLISKGADV------NAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
+S GA+ VN ++ G T LD E G+ EI ++ G
Sbjct: 123 ISKGAD------VNTSDSDGRTPLD----LAREHGNEEIVKLLEKQGG 160
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+ G+ D VK++I D + DG +P+H A+ G ++V+ L+ +
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
+ + + +TPLH+AA +G ++V ++S + S R T LH A K E+V+
Sbjct: 64 -NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLHYAAKEGHKEIVKL 121
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
L+ DV N D G T L LA ++V+LL G
Sbjct: 122 LISKGADV------NTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 24/169 (14%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ GQ D VR LM + + + + TPLH AA +G +++V +L A DV+
Sbjct: 9 AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA----GADVNA 63
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
+ + T LHLA + E+V L+ DV N KDK G T LHLA + ++V
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIV 117
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSA 249
E+LL GA+ VNA + G T D+ + G +I E+ A
Sbjct: 118 EVLLKAGAD------VNAQDKFGKTPFDLAIR----EGHEDIAEVLQKA 156
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 74 NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA 133
++DG++P+H+A+ G +++V L+K + + + + TPLH AA +G +++V +L A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 134 YGECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHL 190
DV+ + + T LHLA + E+V L+ DV N +DK G T L
Sbjct: 91 ----GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV------NAQDKFGKTPFDL 140
Query: 191 ATWKRECQVVELL 203
A + + E+L
Sbjct: 141 AIREGHEDIAEVL 153
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LHLA + E+V L+ DV N KDK G T LHLA + ++VE+LL
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
GA+ VNA + G T L + G EI E+ AGA
Sbjct: 91 GAD------VNAKDKDGYTP----LHLAAREGHLEIVEVLLKAGA 125
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 152 AVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS 211
A + Q + VR L+ DV N KDK G T LHLA + ++VE+LL GA+
Sbjct: 9 AARAGQDDEVRILMANGADV------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 60
Query: 212 GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
VNA + G T L + G EI E+ AGA
Sbjct: 61 ----VNAKDKDGYTP----LHLAAREGHLEIVEVLLKAGA 92
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
TPLH AA+ G +++V E+L +G + V T LHLA E+V L+ + DV
Sbjct: 49 TPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV- 106
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232
N D G+T LHLA + ++VE+LL +GA +VNA + G TA D+ +
Sbjct: 107 -----NAFDMTGSTPLHLAADEGHLEIVEVLLKYGA------DVNAQDKFGKTAFDISID 155
Query: 233 FPSE 236
+E
Sbjct: 156 NGNE 159
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF--DQ 101
G L A+ G D V+ +I D V+ G +P+H+A+ +G +++V L+K D
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161
+ G TPLH AA+ G +++V E+L YG + T LHLA E+V
Sbjct: 74 DAADVYGF---TPLHLAAMTGHLEIV-EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIV 129
Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLA 191
L+ + DV N +DK G TA ++
Sbjct: 130 EVLLKYGADV------NAQDKFGKTAFDIS 153
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 71/124 (57%), Gaps = 15/124 (12%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDF-AKEVNQDGFSPMHMASANGQIDVVRGLMKF--DQK 102
PLH+A+ GH++ V+ +++ D A +V GF+P+H+A+ G +++V L+K+ D
Sbjct: 50 PLHLAAVSGHLEIVEVLLKHGADVDAADVY--GFTPLHLAAMTGHLEIVEVLLKYGADVN 107
Query: 103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR---ETVLHLAVKNNQFE 159
+ G TPLH AA +G +++V E+L YG DV+ Q +T +++ N +
Sbjct: 108 AFDMTGS---TPLHLAADEGHLEIV-EVLLKYG---ADVNAQDKFGKTAFDISIDNGNED 160
Query: 160 VVRA 163
+ ++
Sbjct: 161 LAKS 164
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 61/148 (41%), Gaps = 23/148 (15%)
Query: 152 AVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS 211
A + Q + VR L+ DV N D G T LHLA ++VE+LL HGA
Sbjct: 21 AARAGQDDEVRILIANGADV------NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA--- 71
Query: 212 GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA-MRMRDLTLS-PIRSPEPHG 269
+V+A + G T L + G EI E+ GA + D+T S P+ G
Sbjct: 72 ---DVDAADVYGFTP----LHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEG 124
Query: 270 QTSVDNCISTEANLRQPNDLMEYFKFKK 297
+ E L+ D+ KF K
Sbjct: 125 HLEI-----VEVLLKYGADVNAQDKFGK 147
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ GQ D VR LM + TPLH AA G +++V E+L +G + +
Sbjct: 21 AARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDI 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
T LHLA E+V L+ DV N D G+T LHLA ++VE+L
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGADV------NAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
L HGA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 133 LKHGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIR 64
+ + ++L+ AA G ++ L + T A S PLH+A+ YGH++ V+ +++
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDA--SGLTPLHLAATYGHLEIVEVLLK 68
Query: 65 LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV 124
D ++ G +P+H+A+ G +++V L+K + + TPLH AAI G +
Sbjct: 69 HGADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD-TWGDTPLHLAAIMGHL 126
Query: 125 DVVSEML---------SAYGECAEDVSVQR 145
++V +L +G+ A D+S+
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ GQ D VR LM + TPLH AA G +++V E+L +G + +
Sbjct: 21 AARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDI 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
T LHLA E+V L+ DV N D G+T LHLA ++VE+L
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLKHGADV------NAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
L HGA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 133 LKHGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIR 64
+ + ++L+ AA G ++ L + T A S PLH+A+ YGH++ V+ +++
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDA--SGLTPLHLAATYGHLEIVEVLLK 68
Query: 65 LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV 124
D ++ G +P+H+A+ G +++V L+K + + TPLH AAI G +
Sbjct: 69 HGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD-TWGDTPLHLAAIMGHL 126
Query: 125 DVVSEML---------SAYGECAEDVSVQR 145
++V +L +G+ A D+S+
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ GQ D VR LM + + + TPLH AA G +++V E+L G +
Sbjct: 21 AARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIV-EVLLKNGADVNALDF 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
T LHLA K E+V L+ + DV N D G+T LHLA ++VE+L
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGADV------NADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
L +GA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 133 LKYGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 11/163 (6%)
Query: 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIR 64
+ + ++L+ AA G ++ L + + PLH+A+ GH++ V+ +++
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGD--TPLHLAARVGHLEIVEVLLK 68
Query: 65 LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV 124
D ++ G +P+H+A+ G +++V L+K+ + TPLH AA G +
Sbjct: 69 NGADV-NALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLHLAADTGHL 126
Query: 125 DVVSEMLSAYGECAEDVSVQR---ETVLHLAVKNNQFEVVRAL 164
++V E+L YG DV+ Q +T +++ N ++ L
Sbjct: 127 EIV-EVLLKYG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 26/172 (15%)
Query: 108 GPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW 167
G + L AA G+ D V +L A G +T LHLA + E+V L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEV-RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 168 IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
DV N D G+T LHLA + ++VE+LL +GA +VNA + G T
Sbjct: 70 GADV------NALDFSGSTPLHLAAKRGHLEIVEVLLKYGA------DVNADDTIGSTP- 116
Query: 228 DVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCIST 279
L ++ G EI E+ GA + + + G+T+ D I
Sbjct: 117 ---LHLAADTGHLEIVEVLLKYGA---------DVNAQDKFGKTAFDISIDN 156
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK--FDQ 101
G L A+ G D V+ ++ D + DG++P+H+A++NG +++V L+K D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLKNGADV 73
Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161
L G TPLH AA G +++V E+L +G T LHLA K E+V
Sbjct: 74 NASDLTGI---TPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIV 129
Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
L+ DV N +DK G TA ++ + E+L
Sbjct: 130 EVLLKHGADV------NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ GQ D VR LM + + + TPLH AA G +++V E+L G +
Sbjct: 21 AARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDL 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
T LHLA E+V L+ DV N D G+T LHLA ++VE+L
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHGADV------NAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
L HGA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 133 LKHGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 26/202 (12%)
Query: 16 ALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQ 75
A +G ++ L++ + + L T + LH A + GH + V+ +++L + +
Sbjct: 15 AYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDD 72
Query: 76 DGFSPMHMASANGQIDVVRGLM-------KFDQKLCHLQGPERKTPLHFAAIKGRVDVVS 128
G+SP+H+A++ G+ ++V+ L+ +Q C TPLH+AA K R ++
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC--------TPLHYAASKNRHEIAV 124
Query: 129 EMLSAYGECAEDVSVQRE-TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187
+L G D E T +H A +++ L+ + N++D +GNT
Sbjct: 125 MLLE--GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST------NIQDTEGNTP 176
Query: 188 LHLATWKRECQVVELLLSHGAN 209
LHLA + + +LL+S GA+
Sbjct: 177 LHLACDEERVEEAKLLVSQGAS 198
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+ G+ D VK++I D + DG +P+H A+ NG +VV+ L+ +
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
+ + + +TPLH AA G +VV ++S + S R T LH A +N EVV+
Sbjct: 64 -NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-TPLHHAAENGHKEVVKL 121
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
L+ DV N D G T L LA +VV+LL G
Sbjct: 122 LISKGADV------NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ NG D V+ L++ + + + +TPLH AA G +VV ++S + S
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
R T LH A +N EVV+ L+ DV N KD G T LH A +VV+LL
Sbjct: 70 GR-TPLHHAAENGHKEVVKLLISKGADV------NAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
+S GA +VN ++ G T LD E G+ E+ ++ G
Sbjct: 123 ISKGA------DVNTSDSDGRTPLD----LAREHGNEEVVKLLEKQGG 160
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 26/202 (12%)
Query: 16 ALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQ 75
A +G ++ L++ + + L T + LH A + GH + V+ +++L + +
Sbjct: 14 AYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDD 71
Query: 76 DGFSPMHMASANGQIDVVRGLM-------KFDQKLCHLQGPERKTPLHFAAIKGRVDVVS 128
G+SP+H+A++ G+ ++V+ L+ +Q C TPLH+AA K R ++
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC--------TPLHYAASKNRHEIAV 123
Query: 129 EMLSAYGECAEDVSVQRE-TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187
+L G D E T +H A +++ L+ + N++D +GNT
Sbjct: 124 MLLE--GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST------NIQDTEGNTP 175
Query: 188 LHLATWKRECQVVELLLSHGAN 209
LHLA + + +LL+S GA+
Sbjct: 176 LHLACDEERVEEAKLLVSQGAS 197
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 22/170 (12%)
Query: 84 ASANGQIDVVRGLMK--FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV 141
A+ NG D V+ L++ D G +TPLH+AA G ++V +LS +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDG---RTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 142 SVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201
S R T LH A +N E+V+ L+ D N KD G T LH A ++V+
Sbjct: 68 SDGR-TPLHYAAENGHKEIVKLLLSKGADP------NAKDSDGRTPLHYAAENGHKEIVK 120
Query: 202 LLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
LLLS GA+ N ++ G T LD E G+ EI ++ G
Sbjct: 121 LLLSKGADP------NTSDSDGRTPLD----LAREHGNEEIVKLLEKQGG 160
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+ G+ D VK+++ D + DG +P+H A+ NG ++V+ L+
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD- 62
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
+ + + +TPLH+AA G ++V +LS + S R T LH A +N E+V+
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLHYAAENGHKEIVKL 121
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
L+ D N D G T L LA ++V+LL G
Sbjct: 122 LLSKGADP------NTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 118/261 (45%), Gaps = 38/261 (14%)
Query: 12 LIAAALTGDVQTLQQLFVENPLILHTPAFASAG---NPLHVASAYGHVDFVKEIIRLKPD 68
L+ AA +G+ + L L L+ AS G PLH+A+ Y V V+ +++ D
Sbjct: 28 LLEAARSGNEEKLMALLTP----LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 69 FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVS 128
+ ++ G P+H A + G +V L+K + + TPLH AA K RV+V S
Sbjct: 84 VHAK-DKGGLVPLHNACSYGHYEVTELLLKHG-ACVNAMDLWQFTPLHEAASKNRVEVCS 141
Query: 129 EMLS---------AYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW-IRDVKKE---N 175
+LS +G+ A D++ E L + +++A + + VKK
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE 201
Query: 176 ILNMKDKQGN-TALHLATW----KRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL 230
I+N K Q + TALH A KR+ QV ELLL GAN VN N +T L V
Sbjct: 202 IINFKQPQSHETALHCAVASLHPKRK-QVAELLLRKGAN------VNEKNKDFMTPLHV- 253
Query: 231 LSFPSEAGDREIEEIFWSAGA 251
+E ++ E+ GA
Sbjct: 254 ---AAERAHNDVMEVLHKHGA 271
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
L G +K L AA G + + +L+ ++ T LHLA N+ +V+ L+
Sbjct: 19 LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL 78
Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
DV + KDK G LH A +V ELLL HGA
Sbjct: 79 QHGADV------HAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 49 VASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG 108
VAS + V E++ K E N+D +P+H+A+ DV+ L K K+ L
Sbjct: 219 VASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS 278
Query: 109 PERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ 144
+T LH AA+ G + +LS YG +S+Q
Sbjct: 279 L-GQTALHRAALAGHLQTCRLLLS-YGSDPSIISLQ 312
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 66/262 (25%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF--DQKL 103
PLH A +YGH + V E++ ++ F+P+H A++ +++V L+ D L
Sbjct: 94 PLHNACSYGHYE-VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152
Query: 104 CHLQG---------PERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---------R 145
+ G PE + L + KG + + + + + ++++
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYE-FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211
Query: 146 ETVLHLAV-----------------------KNNQF------EVVRALVDWIRDVKKENI 176
ET LH AV KN F RA D + + K
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 177 -LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPS 235
+N D G TALH A Q LLLS+G++ S + G TA +
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS------IISLQGFTA--------A 317
Query: 236 EAGDREIEEIFWSAGAMRMRDL 257
+ G+ +++I + MR D+
Sbjct: 318 QMGNEAVQQILSESTPMRTSDV 339
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ GQ D VR LM + + TPLH AA G +++V E+L +G + V
Sbjct: 21 AARAGQDDEVRILMA-NGADVNAADNTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDV 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
T LHLA E+V L+ DV N D G T LHLA ++VE+L
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNGADV------NAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
L HGA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 133 LKHGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 13/162 (8%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF--DQ 101
G L A+ G D V+ ++ D N G +P+H+A+ +G +++V L+K D
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHGADV 73
Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161
+ G TPLH AA G +++V E+L G + T LHLA K E+V
Sbjct: 74 DASDVFG---YTPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
L+ DV N +DK G TA ++ + E+L
Sbjct: 130 EVLLKHGADV------NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 15 AALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVN 74
AA +G ++ ++ L + + F PLH+A+ +GH++ V+ +++ D ++
Sbjct: 54 AAYSGHLEIVEVLLKHGADVDASDVFGY--TPLHLAAYWGHLEIVEVLLKNGADV-NAMD 110
Query: 75 QDGFSPMHMASANGQIDVVRGLMK 98
DG +P+H+A+ G +++V L+K
Sbjct: 111 SDGMTPLHLAAKWGYLEIVEVLLK 134
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N D G T LHLA + ++VE+LL HGA +V+A++ G T L +
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA------DVDASDVFGYTP----LHLAAY 89
Query: 237 AGDREIEEIFWSAGA 251
G EI E+ GA
Sbjct: 90 WGHLEIVEVLLKNGA 104
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LHL V N E++ L+ + DV N DK G T LHLA ++ ++VE+LL +
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADV------NASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPE 266
GA +VNA ++ G T L +E G EI E+ GA + + +
Sbjct: 103 GA------DVNAMDYQGYTP----LHLAAEDGHLEIVEVLLKYGA---------DVNAQD 143
Query: 267 PHGQTSVDNCIST 279
G+T+ D I
Sbjct: 144 KFGKTAFDISIDN 156
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 23/137 (16%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIR 169
TPLH G ++++ +L + A DV+ + T LHLA E+V L+ +
Sbjct: 49 TPLHLVVNNGHLEIIEVLL----KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Query: 170 DVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
DV N D QG T LHLA ++VE+LL +GA +VNA + G TA D+
Sbjct: 105 DV------NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA------DVNAQDKFGKTAFDI 152
Query: 230 LLSFPSEAGDREIEEIF 246
+ + G+ ++ EI
Sbjct: 153 SI----DNGNEDLAEIL 165
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Query: 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIR 64
+ + ++L+ AA G ++ L + F PLH+ GH+ EII
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGIT--PLHLVVNNGHL----EIIE 64
Query: 65 LKPDFAKEVN---QDGFSPMHMASANGQIDVVRGLMKF--DQKLCHLQGPERKTPLHFAA 119
+ +A +VN + G++P+H+A+ G +++V L+K+ D QG TPLH AA
Sbjct: 65 VLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQG---YTPLHLAA 121
Query: 120 IKGRVDVVSEMLSAYGECAEDVSVQR---ETVLHLAVKNNQFEVVRAL 164
G +++V E+L YG DV+ Q +T +++ N ++ L
Sbjct: 122 EDGHLEIV-EVLLKYG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N D G T LHL +++E+LL + A +VNA++ SG T L +
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLKYAA------DVNASDKSGWTP----LHLAAY 89
Query: 237 AGDREIEEIFWSAGA 251
G EI E+ GA
Sbjct: 90 RGHLEIVEVLLKYGA 104
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
TPLH AA G +++V +L + D S+ T LHLA EVV L+ DV
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV-TPLHLAADRGHLEVVEVLLKNGADV- 106
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232
N D G T LHLA ++VE+LL HGA +VNA + G TA D+ +
Sbjct: 107 -----NANDHNGFTPLHLAANIGHLEIVEVLLKHGA------DVNAQDKFGKTAFDISI- 154
Query: 233 FPSEAGDREIEEIF 246
+ G+ ++ EI
Sbjct: 155 ---DNGNEDLAEIL 165
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 17/112 (15%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQD---GFSPMHMASANGQIDVVRGLMKFDQK 102
PLH+A+ +GH++ V+ +++ D VN D G +P+H+A+ G ++VV L+K +
Sbjct: 50 PLHLAAYFGHLEIVEVLLKNGAD----VNADDSLGVTPLHLAADRGHLEVVEVLLK-NGA 104
Query: 103 LCHLQGPERKTPLHFAAIKGRVDVVSEML---------SAYGECAEDVSVQR 145
+ TPLH AA G +++V +L +G+ A D+S+
Sbjct: 105 DVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 77 GFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGE 136
G++P+H+A+ G +++V L+K + + TPLH AA +G ++VV +L +
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEVLL----K 101
Query: 137 CAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATW 193
DV+ T LHLA E+V L+ DV N +DK G TA ++
Sbjct: 102 NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV------NAQDKFGKTAFDISID 155
Query: 194 KRECQVVELL 203
+ E+L
Sbjct: 156 NGNEDLAEIL 165
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N D G T LHLA + ++VE+LL +GA +VNA + G+T L ++
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA------DVNADDSLGVTP----LHLAAD 89
Query: 237 AGDREIEEIFWSAGA 251
G E+ E+ GA
Sbjct: 90 RGHLEVVEVLLKNGA 104
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 19/167 (11%)
Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
++ +++PLH AA G VD+ ML G + S + T L A +NN E V+ L+
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDIC-HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG-----ANASGGLE--VNA 218
K +++ KD +G+T LHLA K +VV+ LLS+G GG + A
Sbjct: 65 ------KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 219 TNHSGLTALDVLLSFPSEAGDREIEE---IFWSA--GAMRMRDLTLS 260
T + + + +LLS S+ R+ EE + W+A G + + ++ L+
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
+PLH A+ GHVD +++ + ++D +P+ A+ N ++ V+ L+K L
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAG-ALV 70
Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEVV 161
+ E T LH AA KG +VV +LS G+ DV+ Q + T + A + ++V
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLS-NGQ--MDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS-----HGANASG 212
+ L + K + +N++D + N LH A + + E+LL+ H N G
Sbjct: 128 KLL------LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 74 NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA 133
+Q+ SP+H A+ G +D+ L++ + +++TPL AA ++ V ++ A
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 134 YGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATW 193
G + + T LHLA K +EVV+ L+ + +N +D G T + AT
Sbjct: 67 -GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS-----NGQMDVNCQDDGGWTPMIWATE 120
Query: 194 KRECQVVELLLSHGAN 209
+ +V+LLLS G++
Sbjct: 121 YKHVDLVKLLLSKGSD 136
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 41/180 (22%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PL A+ H++ VK +I+ + +G + +H+A+ G +VV+ L+ Q +
Sbjct: 47 PLMEAAENNHLEAVKYLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105
Query: 106 LQGPERKTP---------------------------------LHFAAIKGRVDVVSEMLS 132
Q TP LH+AA G VD+ +L+
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165
Query: 133 AYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT 192
A + V++ ++ LH+A + N+++ V + DV +K+K+G T L A+
Sbjct: 166 AKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV------TLKNKEGETPLQCAS 218
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 47 LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
LH A + GH + V+ +++L + + G+SP+H+A++ G+ ++V+ L+ K H+
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALL---VKGAHV 99
Query: 107 QGPERK--TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
+ TPLH+AA K R ++ +L G + T +H A ++V L
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
+ + N++D +GNT LHLA + + + L++ GA+
Sbjct: 159 LFYKAST------NIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
+PLH+A++ G + VK ++ +K VNQ+G +P+H A++ + ++ L++
Sbjct: 75 SPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-- 131
Query: 105 HLQGPERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFE 159
P+ K T +H AA KG + +V +L Y + T LHLA + E
Sbjct: 132 ----PDAKDHYDATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 160 VVRALV 165
+ LV
Sbjct: 187 EAKFLV 192
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 87 NGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE 146
+G++D ++ + D+ L + +T LH+A G ++V E L G D
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGW 74
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
+ LH+A + E+V+AL+ VK ++ N ++ G T LH A K ++ +LL
Sbjct: 75 SPLHIAASAGRDEIVKALL-----VKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 207 GANASGGLEVNAT 219
GAN +AT
Sbjct: 129 GANPDAKDHYDAT 141
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 119 AIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILN 178
A G++D + E + A A T LH A E+V L+ V N
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV------N 67
Query: 179 MKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG 238
KD G + LH+A ++V+ LL GA+ VNA N +G T L + +
Sbjct: 68 DKDDAGWSPLHIAASAGRDEIVKALLVKGAH------VNAVNQNGCTP----LHYAASKN 117
Query: 239 DREIEEIFWSAGA 251
EI + GA
Sbjct: 118 RHEIAVMLLEGGA 130
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 47 LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
LH A + GH + V+ +++L + + G+SP+H+A++ G ++V+ L+ K H+
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALL---VKGAHV 99
Query: 107 QGPERK--TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
+ TPLH+AA K R ++ +L G + T +H A ++V L
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
+ + N++D +GNT LHLA + + + L++ GA+
Sbjct: 159 LFYKAST------NIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
+PLH+A++ G + VK ++ +K VNQ+G +P+H A++ + ++ L++
Sbjct: 75 SPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-- 131
Query: 105 HLQGPERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFE 159
P+ K T +H AA KG + +V +L Y + T LHLA + E
Sbjct: 132 ----PDAKDHYDATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 160 VVRALV 165
+ LV
Sbjct: 187 EAKFLV 192
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 87 NGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE 146
+G++D ++ + D+ L + +T LH+A G ++V E L G D
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGW 74
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
+ LH+A E+V+AL+ VK ++ N ++ G T LH A K ++ +LL
Sbjct: 75 SPLHIAASAGXDEIVKALL-----VKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 207 GANASGGLEVNAT 219
GAN +AT
Sbjct: 129 GANPDAKDHYDAT 141
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 119 AIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILN 178
A G++D + E + A A T LH A E+V L+ V N
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV------N 67
Query: 179 MKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG 238
KD G + LH+A ++V+ LL GA+ VNA N +G T L + +
Sbjct: 68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAH------VNAVNQNGCTP----LHYAASKN 117
Query: 239 DREIEEIFWSAGA 251
EI + GA
Sbjct: 118 RHEIAVMLLEGGA 130
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
TPLH AA G +++V E+L G T LHLA E+V L+ DV
Sbjct: 49 TPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV- 106
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232
N KD G T LHLA + ++VE+LL +GA +VNA + G TA D+ ++
Sbjct: 107 -----NAKDDNGITPLHLAANRGHLEIVEVLLKYGA------DVNAQDKFGKTAFDISIN 155
Query: 233 FPSEAGDREIEEIF 246
G+ ++ EI
Sbjct: 156 ----NGNEDLAEIL 165
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIR 64
+ + ++L+ AA G ++ L + A PLH+A+ +GH++ V+ +++
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADV--NAADVVGWTPLHLAAYWGHLEIVEVLLK 68
Query: 65 LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV 124
D + G +P+H+A+ G +++V L+K + + + TPLH AA +G +
Sbjct: 69 NGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGADVNAKDDNGITPLHLAANRGHL 126
Query: 125 DVVSEMLSAYGECAEDVSVQR---ETVLHLAVKNNQFEVVRAL 164
++V E+L YG DV+ Q +T +++ N ++ L
Sbjct: 127 EIV-EVLLKYG---ADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 77 GFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGE 136
G++P+H+A+ G +++V L+K + TPLH AA G +++V +L +
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYD-TLGSTPLHLAAHFGHLEIVEVLL----K 101
Query: 137 CAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATW 193
DV+ + + T LHLA E+V L+ + DV N +DK G TA ++
Sbjct: 102 NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV------NAQDKFGKTAFDISIN 155
Query: 194 KRECQVVELL 203
+ E+L
Sbjct: 156 NGNEDLAEIL 165
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N D G T LHLA + ++VE+LL +GA +VNA + G T L + F
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA------DVNAYDTLGSTPLHLAAHF--- 90
Query: 237 AGDREIEEIFWSAGA 251
G EI E+ GA
Sbjct: 91 -GHLEIVEVLLKNGA 104
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 23/137 (16%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIR 169
TPLH AA G +++V +L + DV+ + T LHLA + E+V L+
Sbjct: 49 TPLHLAAHFGHLEIVEVLL----KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Query: 170 DVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
DV N D G T LHLA + ++VE+LL +GA +VNA + G TA D+
Sbjct: 105 DV------NASDSHGFTPLHLAAKRGHLEIVEVLLKNGA------DVNAQDKFGKTAFDI 152
Query: 230 LLSFPSEAGDREIEEIF 246
+ + G+ ++ EI
Sbjct: 153 SI----DNGNEDLAEIL 165
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PLH+A+ +GH++ V+ +++ D + + G +P+H+A+ G +++V L+K + +
Sbjct: 50 PLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIVEVLLK-NGADVN 107
Query: 106 LQGPERKTPLHFAAIKGRVDVVSEML---------SAYGECAEDVSVQ 144
TPLH AA +G +++V +L +G+ A D+S+
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LHLA E+V L+ DV N KD G T LHLA + ++VE+LL +
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADV------NAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPE 266
GA +VNA++ G T L ++ G EI E+ GA + + +
Sbjct: 103 GA------DVNASDSHGFTP----LHLAAKRGHLEIVEVLLKNGA---------DVNAQD 143
Query: 267 PHGQTSVDNCIST 279
G+T+ D I
Sbjct: 144 KFGKTAFDISIDN 156
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 74 NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA 133
+QDG SP+H+A+ +G+ D++ L+K + ++ PLH A +G VV +L +
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDS 141
Query: 134 YGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATW 193
+ + T L A E+V L+ + N + +GNTALH A
Sbjct: 142 NAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASI------NASNNKGNTALHEAVI 194
Query: 194 KRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
++ VVELLL HGA+ V N TA+D
Sbjct: 195 EKHVFVVELLLLHGAS------VQVLNKRQRTAVDC 224
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANA 210
+N+ + G++ LH+A ++ LLL HGANA
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA 112
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 54.7 bits (130), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PLH+A+ GH++ VK ++ D + +++G +P+H+A+ NG ++VV+ L++ + +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-N 62
Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSA 133
+ +TPLH AA G ++VV +L A
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LHLA +N EVV+ L++ DV N KDK G T LHLA +VV+LLL
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV------NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
GA +VNA + +G T L + + G E+ ++ AGA
Sbjct: 58 GA------DVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGA 92
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 8/94 (8%)
Query: 76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYG 135
+G +P+H+A+ NG ++VV+ L++ + + + +TPLH AA G ++VV +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLL---- 55
Query: 136 ECAEDVSVQRE---TVLHLAVKNNQFEVVRALVD 166
E DV+ + + T LHLA +N EVV+ L++
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 32.0 bits (71), Expect = 0.64, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 184 GNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIE 243
G T LHLA +VV+LLL GA +VNA + +G T L + + G E+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA------DVNAKDKNGRTPLHL----AARNGHLEVV 51
Query: 244 EIFWSAGA 251
++ AGA
Sbjct: 52 KLLLEAGA 59
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 17/161 (10%)
Query: 47 LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
+H +A G +D +KE +R + + ++ GF+P+ ASA G+I+ VR L+++ H+
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHI 64
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV---QRETVLHLAVKNNQFEVVRA 163
ER++ L A+ G D+V +L E D+++ T L AV+ N + V A
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL----ERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLAT---WKRECQVVE 201
L+ D+ E G T + LA +++ QV+E
Sbjct: 121 LLARGADLTTEA------DSGYTPMDLAVALGYRKVQQVIE 155
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 69 FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPE-------RKTPLHFAAIK 121
A ++DG +P+H+A G + V L+ Q+ G E R+TPLH A I
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ----GGRELDIYNNLRQTPLHLAVIT 56
Query: 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKD 181
VV +++A G + +T HLA ++ +RAL+D + L ++
Sbjct: 57 TLPSVVRLLVTA-GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD--LEARN 113
Query: 182 KQGNTALHLATWKRECQ-VVELLLSHGAN 209
G TALH+A ECQ V+LLL GA+
Sbjct: 114 YDGLTALHVAV-NTECQETVQLLLERGAD 141
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 49/207 (23%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEV---NQDGFSPMHMASANGQIDVVRGL------ 96
PLH+A G++ V ++ L +E+ N +P+H+A VVR L
Sbjct: 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71
Query: 97 -MKFD---QKLCHLQGPERKTP-----LHFAAIKGRVDVVSE--------MLSAYGECAE 139
M D Q HL E ++P L +A G +D+ + ++ EC E
Sbjct: 72 PMALDRHGQTAAHL-ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 130
Query: 140 ---------------DVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQG 184
D+ R ++H AV+NN +V+ L+ +V N + G
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPLIH-AVENNSLSMVQLLLQHGANV------NAQMYSG 183
Query: 185 NTALHLATWKRECQVVELLLSHGANAS 211
++ALH A+ + +V L+ GA++S
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSS 210
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
TPLH AA G +++V E+L G V T L LA E+V L+ DV
Sbjct: 49 TPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV- 106
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232
N D +G+T LHLA ++VE+LL +GA +VNA + G TA D+ +
Sbjct: 107 -----NANDMEGHTPLHLAAMFGHLEIVEVLLKNGA------DVNAQDKFGKTAFDISI- 154
Query: 233 FPSEAGDREIEEIF 246
+ G+ ++ EI
Sbjct: 155 ---DNGNEDLAEIL 165
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIR 64
+ + ++L+ AA G ++ L + AS PLH+A+ GH++ V+ +++
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADV--NAEDASGWTPLHLAAFNGHLEIVEVLLK 68
Query: 65 LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV 124
D V+ G +P+ +A+ G +++V L+K + + E TPLH AA+ G +
Sbjct: 69 NGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHL 126
Query: 125 DVVSEML---------SAYGECAEDVSVQR 145
++V +L +G+ A D+S+
Sbjct: 127 EIVEVLLKNGADVNAQDKFGKTAFDISIDN 156
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 9/160 (5%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+ G D V+ ++ D E + G++P+H+A+ NG +++V L+K +
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
+ TPL AA+ G +++V E+L G ++ T LHLA E+V
Sbjct: 74 NAVD-HAGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
L+ DV N +DK G TA ++ + E+L
Sbjct: 132 LLKNGADV------NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 37/209 (17%)
Query: 50 ASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP 109
A+ YG + +E++ D ++ +++ + +H A+ N +ID+V+ + + L G
Sbjct: 16 ATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74
Query: 110 ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIR 169
TPLH+A +G + +V +++ YG + + + +HLA + +V L+ +
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMK-YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 170 DVKKEN----------------------------ILNMKDK-QGNTALHLATWKRECQVV 200
DV + +N+ DK NTALH A V+
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDV 229
LLL GAN V+A N G +ALD+
Sbjct: 194 SLLLEAGAN------VDAQNIKGESALDL 216
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PLH A+ GH+ V ++++ D ++ +G S +H+A+ G +V L+ Q +
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-D 136
Query: 106 LQGPERKTPLHFAAIKGR-VDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
+ TPL +AA + VD +L+ + T LH AV V+ L
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196
Query: 165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
++ +V +NI +G +AL LA ++ ++ L
Sbjct: 197 LEAGANVDAQNI------KGESALDLAKQRKNVWMINHL 229
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 1 MTSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVK 60
M S ++ DR+L+ AA GDV+T+++L + PLH A+ Y V V+
Sbjct: 3 MGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVE 61
Query: 61 EIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAI 120
+++ D + ++ G P+H A + G +V L+K + ++ + TPLH AA
Sbjct: 62 YLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAA 119
Query: 121 KGRVDVVSEML 131
KG+ ++ +L
Sbjct: 120 KGKYEICKLLL 130
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ G ++ V+ L C + TPLHFAA RV VV +L + DV
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL----QHGADVHA 72
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
+ + LH A +EV L VK ++N+ D T LH A K + ++
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELL------VKHGAVVNVADLWKFTPLHEAAAKGKYEIC 126
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
+LLL HGA+ + N G T LD++ + GD +I+++ A+
Sbjct: 127 KLLLQHGADPT------KKNRDGNTPLDLV-----KDGDTDIQDLLRGDAAL 167
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 17/161 (10%)
Query: 47 LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
+H +A G +D +KE +R + + ++ GF+P+ ASA G+I+ VR L+++ H+
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHI 64
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV---QRETVLHLAVKNNQFEVVRA 163
ER++ L A+ G D+V +L E D+++ T L AV N + V A
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL----ERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLAT---WKRECQVVE 201
L+ D+ E G T + LA +++ QV+E
Sbjct: 121 LLARGADLTTEA------DSGYTPMDLAVALGYRKVQQVIE 155
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 118 AAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENIL 177
AA G+ D V +L+A G T LHLA E+V L+ DV
Sbjct: 21 AARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV------ 73
Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEA 237
N G T LHLA W ++VE+LL HGA +VNA + G TA D+ + +
Sbjct: 74 NATGNTGRTPLHLAAWADHLEIVEVLLKHGA------DVNAQDKFGKTAFDISI----DN 123
Query: 238 GDREIEEIF 246
G+ ++ EI
Sbjct: 124 GNEDLAEIL 132
Score = 35.8 bits (81), Expect = 0.044, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 77 GFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLS---- 132
G +P+H+A+ G +++V L+K + + G +TPLH AA +++V +L
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Query: 133 -----AYGECAEDVSV 143
+G+ A D+S+
Sbjct: 106 VNAQDKFGKTAFDISI 121
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
PLH+A+ GH++ V+ +++ D N G +P+H+A+ +++V L+K
Sbjct: 50 PLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLK 101
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 17/129 (13%)
Query: 118 AAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENIL 177
AA G+ D V +L A G + T LHLA + E+V L+ + DV
Sbjct: 21 AARAGQDDEV-RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV------ 73
Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEA 237
N +D G T LHLA + ++VE+LL HGA +VNA + G TA D+ + +
Sbjct: 74 NAEDNFGITPLHLAAIRGHLEIVEVLLKHGA------DVNAQDKFGKTAFDISI----DN 123
Query: 238 GDREIEEIF 246
G+ ++ EI
Sbjct: 124 GNEDLAEIL 132
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+ G D V+ ++ D +++DG +P+H+A+ G +++V L+K+ +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGAD-VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLS---------AYGECAEDVSV 143
+ + TPLH AAI+G +++V +L +G+ A D+S+
Sbjct: 74 -NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 71 KEVNQDGFSPMHMASANGQ----IDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDV 126
+++ +DG S +H+A + + ++V+R +K D + Q ++TPLH A I + ++
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQ-VKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60
Query: 127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNT 186
+L A G E + T LHLA + V L +IL + G+T
Sbjct: 61 AEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119
Query: 187 ALHLATWKRECQVVELLLSHGANASG 212
LHLA+ +VELL+S GA+ +
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNA 145
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 47 LHVASAYGHVDFVKEIIR-LKPDFAKEVNQDGF--SPMHMASANGQIDVVRGLMK--FDQ 101
LH+A + E+IR +K D A Q+ +P+H+A Q ++ L+ D
Sbjct: 12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71
Query: 102 KLCHLQGPERKTPLHFAAIKG---RVDVVSEMLSA--YGECAEDVSVQRETVLHLAVKNN 156
+L +G TPLH A +G V V+++ + + + T LHLA +
Sbjct: 72 ELRDFRG---NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEV 216
+V LV DV + N G TALHLA + +V LLL GA+ V
Sbjct: 129 YLGIVELLVSLGADVNAQEPCN-----GRTALHLAVDLQNPDLVSLLLKCGAD------V 177
Query: 217 NATNHSGLTALDVLLSFPS 235
N + G + + PS
Sbjct: 178 NRVTYQGYSPYQLTWGRPS 196
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ G ++ V+ L C + TPLHFAA RV VV +L + DV
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL----QHGADVHA 70
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
+ + LH A +EV L VK ++N+ D T LH A K + ++
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELL------VKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
+LLL HGA+ + N G T LD++ + GD +I+++ A+
Sbjct: 125 KLLLQHGADPT------KKNRDGNTPLDLV-----KDGDTDIQDLLRGDAAL 165
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIR 64
++ DR+L+ AA GDV+T+++L + PLH A+ Y V V+ +++
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 65 LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV 124
D + ++ G P+H A + G +V L+K + ++ + TPLH AA KG+
Sbjct: 64 HGADVHAK-DKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKY 121
Query: 125 DVVSEML 131
++ +L
Sbjct: 122 EICKLLL 128
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Query: 73 VNQDGFSPMHMASANGQ----IDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVS 128
+ +DG S +H+A + + ++V+R +K D + Q ++TPLH A I + ++
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQ-VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 59
Query: 129 EMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTAL 188
+L A G E + T LHLA + V L +IL + G+T L
Sbjct: 60 ALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 118
Query: 189 HLATWKRECQVVELLLSHGANASG 212
HLA+ +VELL+S GA+ +
Sbjct: 119 HLASIHGYLGIVELLVSLGADVNA 142
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 31/225 (13%)
Query: 47 LHVASAYGHVDFVKEIIR-LKPDFAKEVNQDGF--SPMHMASANGQIDVVRGLMK--FDQ 101
LH+A + E+IR +K D A Q+ +P+H+A Q ++ L+ D
Sbjct: 9 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 68
Query: 102 KLCHLQGPERKTPLHFAAIKG---RVDVVSEMLSA--YGECAEDVSVQRETVLHLAVKNN 156
+L +G TPLH A +G V V+++ + + + T LHLA +
Sbjct: 69 ELRDFRG---NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 125
Query: 157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEV 216
+V LV DV + N G TALHLA + +V LLL GA +V
Sbjct: 126 YLGIVELLVSLGADVNAQEPCN-----GRTALHLAVDLQNPDLVSLLLKCGA------DV 174
Query: 217 NATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSP 261
N + G + + PS +++ G + + +L + P
Sbjct: 175 NRVTYQGYSPYQLTWGRPSTRIQQQL-------GQLTLENLQMLP 212
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
A+ G ++ V+ L C + TPLHFAA RV VV +L + DV
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL----QHGADVHA 74
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
+ + LH A +EV L VK ++N+ D T LH A K + ++
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELL------VKHGAVVNVADLWKFTPLHEAAAKGKYEIC 128
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
+LLL HGA+ + N G T LD++ + GD +I+++ A+
Sbjct: 129 KLLLQHGADPT------KKNRDGNTPLDLV-----KDGDTDIQDLLRGDAAL 169
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIR 64
++ DR+L+ AA GDV+T+++L + PLH A+ Y V V+ +++
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 65 LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV 124
D + ++ G P+H A + G +V L+K + ++ + TPLH AA KG+
Sbjct: 68 HGADVHAK-DKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKY 125
Query: 125 DVVSEML 131
++ +L
Sbjct: 126 EICKLLL 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 118 AAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENIL 177
AA G+ D V +L A G + T LHLA + E+V L+ DV
Sbjct: 21 AARAGQDDEV-RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV------ 73
Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEA 237
N D G+T LHLA ++VE+LL HGA +VNA + G TA D+ + +
Sbjct: 74 NAHDNDGSTPLHLAALFGHLEIVEVLLKHGA------DVNAQDKFGKTAFDISI----DN 123
Query: 238 GDREIEEIF 246
G+ ++ EI
Sbjct: 124 GNEDLAEIL 132
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N D++GNT LHLA ++VE+LL HGA +VNA ++ G T L + F
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGA------DVNAHDNDGSTPLHLAALF--- 90
Query: 237 AGDREIEEIFWSAGA 251
G EI E+ GA
Sbjct: 91 -GHLEIVEVLLKHGA 104
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 44 GN-PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
GN PLH+A+ Y H++ V+ +++ D N DG +P+H+A+ G +++V L+K
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDN-DGSTPLHLAALFGHLEIVEVLLK 101
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 105 HLQGP-ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
H+ G + TPLH AA G + V ++LS G S T LHLA KN E+V+
Sbjct: 2 HMWGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASG 212
L+ DV N + K GNT HLA ++V+LL + GA+ +
Sbjct: 61 LLAKGADV------NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 74 NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA 133
++DG +P+H A+ NG + V+ L+ + + + + TPLH AA G ++V ++L A
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIV-KLLLA 63
Query: 134 YGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
G S T HLA KN E+V+ L
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 44 GN-PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQK 102
GN PLH A+ GH + VK+++ D ++DG +P+H+A+ NG ++V+ L+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYG 135
+ + + + TP H A G ++V ++L A G
Sbjct: 68 V-NARSKDGNTPEHLAKKNGHHEIV-KLLDAKG 98
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LH A KN E V+ L+ DV N + K GNT LHLA ++V+LLL+
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADV------NARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 207 GANASGGLEVNATNHSGLT 225
GA +VNA + G T
Sbjct: 65 GA------DVNARSKDGNT 77
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PLH A V+E++ KP + +QDG P+H + + ++ L+ + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 106 LQGPERK--TPLHFAAIKGRVDVVSEMLS-AYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
P+ TP H A G ++VV + ++ Q T LHLAV FEV +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS 222
L++ V+ +KDK LH A +++ELL G +A VN +
Sbjct: 125 FLIENGASVR------IKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-----VNWQDKQ 173
Query: 223 GLTAL 227
G T L
Sbjct: 174 GWTPL 178
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PLH A V+E++ KP + +QDG P+H + + ++ L+ + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 106 LQGPERK--TPLHFAAIKGRVDVVSEMLS-AYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
P+ TP H A G ++VV + ++ Q T LHLAV FEV +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS 222
L++ V+ +KDK LH A +++ELL G +A VN +
Sbjct: 125 FLIENGASVR------IKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-----VNWQDKQ 173
Query: 223 GLTAL 227
G T L
Sbjct: 174 GWTPL 178
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LHLA K E+V L+ DV N +D G T LHLA ++VE+LL +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADV------NARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
GA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 103 GA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 132
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+ G D V+ ++ D ++ G +P+H+A+ G +++V L+K +
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR---ETVLHLAVKNNQFEV 160
+ + +TPLH AA G +++V E+L YG DV+ Q +T +++ N ++
Sbjct: 74 -NARDIWGRTPLHLAATVGHLEIV-EVLLEYG---ADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 161 VRAL 164
L
Sbjct: 129 AEIL 132
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N D G T LHLA + ++VE+LL HGA +VNA + G T L + +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------DVNARDIWGRTPLHL----AAT 89
Query: 237 AGDREIEEIFWSAGA 251
G EI E+ GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LHLA K E+V L+ DV N D G T LHLA ++VE+LL +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADV------NASDSWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
GA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 103 GA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 132
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+ G D V+ ++ D ++ G +P+H+A+ G +++V L+K +
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR---ETVLHLAVKNNQFEV 160
+ +TPLH AA G +++V E+L YG DV+ Q +T +++ N ++
Sbjct: 74 -NASDSWGRTPLHLAATVGHLEIV-EVLLEYG---ADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 161 VRAL 164
L
Sbjct: 129 AEIL 132
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N D G T LHLA + ++VE+LL HGA +VNA++ G T L + +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------DVNASDSWGRTPLHL----AAT 89
Query: 237 AGDREIEEIFWSAGA 251
G EI E+ GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LHLA N+ E+V L+ DV N D G T LHL ++VE+LL H
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADV------NAIDAIGETPLHLVAMYGHLEIVEVLLKH 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
GA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 103 GA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 132
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N +DK G T LHLA ++VE+LL +GA +VNA + G T L ++ +
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA------DVNAIDAIGETPLHLVAMY--- 90
Query: 237 AGDREIEEIFWSAGA 251
G EI E+ GA
Sbjct: 91 -GHLEIVEVLLKHGA 104
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+ G D V+ ++ D E ++ G +P+H+A+ N +++V L+K +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGADV 73
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLS---------AYGECAEDVSV 143
+ +TPLH A+ G +++V +L +G+ A D+S+
Sbjct: 74 NAIDAIG-ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PLH A V+E++ KP + +QDG P+H + + ++ L+ + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 106 LQGPERK--TPLHFAAIKGRVDVVSEMLS-AYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
P+ TP H A G ++VV + ++ Q T LHLAV FEV +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS 222
L++ V+ +KDK LH A +++ELL G +A VN +
Sbjct: 125 FLIENGASVR------IKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-----VNWQDKQ 173
Query: 223 GLTAL 227
G T L
Sbjct: 174 GWTPL 178
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LHLA K E+V L+ DV N D G T LHLA ++VE+LL +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADV------NASDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
GA +VNA + G TA D+ + + G+ ++ EI
Sbjct: 103 GA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 132
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF--DQ 101
G L A+ G D V+ ++ D ++ G +P+H+A+ G +++V L+K D
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR---ETVLHLAVKNNQF 158
+ G +TPLH AA G +++V E+L YG DV+ Q +T +++ N
Sbjct: 74 NASDIWG---RTPLHLAATVGHLEIV-EVLLEYG---ADVNAQDKFGKTAFDISIDNGNE 126
Query: 159 EVVRAL 164
++ L
Sbjct: 127 DLAEIL 132
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N D G T LHLA + ++VE+LL HGA +VNA++ G T L + +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------DVNASDIWGRTPLHL----AAT 89
Query: 237 AGDREIEEIFWSAGA 251
G EI E+ GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 79 SPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECA 138
SP+ +A+ + + L+KF+ H +G +T LH AA+ ++ ++ A E
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 139 EDVSVQR----ETVLHLAVKNNQFEVVRALVDWIRDVKKE---NILNMKDKQ----GNTA 187
+ +T LH+AV N +VRAL+ V ++ + + G
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFW 247
L A ++V LL+ HGA ++ A + G T L +L+ P++ ++ +
Sbjct: 125 LSFAACVGSEEIVRLLIEHGA------DIRAQDSLGNTVLHILILQPNKTFACQMYNLLL 178
Query: 248 SA-GAMRMRDLTLSP 261
S G ++ L L P
Sbjct: 179 SYDGGDHLKSLELVP 193
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171
++PL AA + V +S++L G ET LH+A + E L++ ++
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASG---GLEVNATNHSGLTALD 228
E + + + +G TALH+A + +V LL+ GA+ S G + H+ + +
Sbjct: 64 VFEPMTS-ELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 229 VLLSFPSEAGDREIEEIFWSAGA-MRMRD 256
LSF + G EI + GA +R +D
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQD 151
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 47 LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
LH+AS G + V+ +++ D + G++P+H A +G + VV L++ + L +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNT 71
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
G + +PLH AA G VD+V +LS YG V++
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLS-YGASRNAVNI 107
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGF---SPMHMASANGQIDVVRGLMKF 99
PLH A +GH+ V+ +++ K VN G+ SP+H A+ NG +D+V+ L+ +
Sbjct: 46 PLHEACNHGHLKVVELLLQHK----ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 74 NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA 133
N G + +H+AS G I V L++ + +++ TPLH A G + VV E+L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVV-ELLLQ 64
Query: 134 YGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMK 180
+ Q ++ LH A KN ++V+ L+ + NI ++
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR 111
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 146 ETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS 205
ET+LH+A V L+ D N+KD G T LH A +VVELLL
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDP------NVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 206 HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMR 253
H A VN T + D L ++ G +I ++ S GA R
Sbjct: 65 HKA------LVNTTGYQN----DSPLHDAAKNGHVDIVKLLLSYGASR 102
Score = 28.5 bits (62), Expect = 7.2, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 181 DKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
+ +G T LH+A+ K + VE LL +G++ N +H+G T L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDP------NVKDHAGWTPL 47
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
+PLH+A +GR VV EML G ++ +T LHLA + ++V+ L+ + D+
Sbjct: 41 SPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI- 98
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
N ++ GN LH A + + QV E L+++GA
Sbjct: 99 -----NAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLM 97
PLH+A+++GH D V+++++ K D VN+ G P+H A GQ V L+
Sbjct: 75 PLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PLH A G V+ +I ++ +N+ +P+H+A+++G D+V+ L+++ +
Sbjct: 42 PLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYG 135
+ PLH+A G+ D V+E L A G
Sbjct: 101 VN-EHGNVPLHYACFWGQ-DQVAEDLVANG 128
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 77 GFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGE 136
GFSP+H A G+ VV L+ ++ ++ TPLH AA G D+V ++L Y
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKA 96
Query: 137 CAEDVSVQRETVLHLAVKNNQFEVVRALV 165
V+ LH A Q +V LV
Sbjct: 97 DINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 174 ENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSF 233
EN LN D G + LH A + VVE+L+ GA +N N D L
Sbjct: 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA------RINVMNRGD----DTPLHL 78
Query: 234 PSEAGDREI 242
+ G R+I
Sbjct: 79 AASHGHRDI 87
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
+PLH+A +GR VV EML G ++ +T LHLA + ++V+ L+ + D+
Sbjct: 36 SPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI- 93
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
N ++ GN LH A + + QV E L+++GA
Sbjct: 94 -----NAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLM 97
PLH+A+++GH D V+++++ K D VN+ G P+H A GQ V L+
Sbjct: 70 PLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
PLH A G V+ +I ++ +N+ +P+H+A+++G D+V+ L+++ + +
Sbjct: 37 PLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-N 94
Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYG 135
PLH+A G+ D V+E L A G
Sbjct: 95 AVNEHGNVPLHYACFWGQ-DQVAEDLVANG 123
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 77 GFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGE 136
GFSP+H A G+ VV L+ ++ ++ TPLH AA G D+V ++L Y
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKA 91
Query: 137 CAEDVSVQRETVLHLAVKNNQFEVVRALV 165
V+ LH A Q +V LV
Sbjct: 92 DINAVNEHGNVPLHYACFWGQDQVAEDLV 120
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 21/190 (11%)
Query: 28 FVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN 87
+ NPL+ S +P+H A+ +GH ++ +I + + D SP+H A
Sbjct: 47 LLSNPLMGDA---VSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLG 102
Query: 88 GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRET 147
G + V+ L+K ++ + + TPL A + G D V+ +L SVQ E+
Sbjct: 103 GHLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQ------HGASVQPES 155
Query: 148 VL----HLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
L H A + E V +L+ + ++ + K T L+LA ++ V+ L
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYGGNI------DHKISHLGTPLYLACENQQRACVKKL 209
Query: 204 LSHGANASGG 213
L GA+ + G
Sbjct: 210 LESGADVNQG 219
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 148 VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG 207
V+H A + Q + ++ L+++ DV N++D +GN LHLA + +VVE L+ H
Sbjct: 73 VIHDAARAGQLDTLQTLLEFQADV------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 208 ANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
A+ V NH G TA D+ + G E+ + + GA
Sbjct: 127 AS-----NVGHRNHKGDTACDLARLY----GRNEVVSLMQANGA 161
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 12 LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEII--RLKPDF 69
L +AA GD++ L L N + F L V G+ + + ++ PD
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRT--ALQVMK-LGNPEIARRLLLRGANPDL 65
Query: 70 AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVV 127
++ GF+ +H A+ GQ+D ++ L++F Q +++ E PLH AA +G + VV
Sbjct: 66 K---DRTGFAVIHDAARAGQLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVV 119
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
+P+H A+ +GH ++ +I + + D SP+H A G + V+ L+K ++
Sbjct: 5 SPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVL----HLAVKNNQFEV 160
+ + TPL A + G D V+ +L SVQ E+ L H A + E
Sbjct: 64 GVTA-DWHTPLFNACVSGSWDCVNLLLQ------HGASVQPESDLASPIHEAARRGHVEC 116
Query: 161 VRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGG 213
V +L+ + ++ + K T L+LA ++ V+ LL GA+ + G
Sbjct: 117 VNSLIAYGGNI------DHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 163
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 23/132 (17%)
Query: 118 AAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKE 174
AA G+ D V +L A G DV+ + E T L+LA + E+V L+ DV
Sbjct: 21 AARAGQDDEV-RILMANGA---DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV--- 73
Query: 175 NILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP 234
N D G T LHLA + ++ E+LL HGA +VNA + G TA D+ +
Sbjct: 74 ---NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA------DVNAQDKFGKTAFDISIG-- 122
Query: 235 SEAGDREIEEIF 246
G+ ++ EI
Sbjct: 123 --NGNEDLAEIL 132
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N KD+ G T L+LAT ++VE+LL +GA +VNA + G T L L +F
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA------DVNAVDAIGFTPLH-LAAF--- 89
Query: 237 AGDREIEEIFWSAGA 251
G EI E+ GA
Sbjct: 90 IGHLEIAEVLLKHGA 104
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
G L A+ G D V+ ++ D + ++ G +P+++A+A+G +++V L+K +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLS---------AYGECAEDVSV 143
+ TPLH AA G +++ +L +G+ A D+S+
Sbjct: 74 NAVDAIGF-TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 23/182 (12%)
Query: 82 HMASANGQI-DVVRGLMKFDQKLCHLQG---PERKTPLHFAAIKGRVDVVSEMLSAYGEC 137
HM NG+I + ++ +Q L L+ +TPL A + G + + +++ + +
Sbjct: 3 HM-DKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL 61
Query: 138 AEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKREC 197
ED ++ T L AVKNN+ + L + K + +N KD G T L +
Sbjct: 62 -EDKDIEGSTALIWAVKNNRLGIAEKL------LSKGSNVNTKDFSGKTPLMWSIIFGYS 114
Query: 198 QVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA-MRMRD 256
++ LL HGAN VN N G T L V S+ G EI + GA + RD
Sbjct: 115 EMSYFLLEHGAN------VNDRNLEGETPLIV----ASKYGRSEIVKKLLELGADISARD 164
Query: 257 LT 258
LT
Sbjct: 165 LT 166
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
+PLH AA G +L A V R T LH+A +V L+ DV
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEGHANIVEVLLKHGADVN 94
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
+++L M TALH AT +VVELL+ +GA+
Sbjct: 95 AKDMLKM------TALHWATEHNHQEVVELLIKYGAD 125
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 45 NPLHVASAYGHVDFVKEIIR--LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQK 102
+PLH+A+ YGH + ++R + D +V++ +P+HMA++ G ++V L+K
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHANIVEVLLKHGAD 92
Query: 103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
+ + + + T LH+A +VV E+L YG S +T +++ N ++
Sbjct: 93 V-NAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
Query: 163 AL 164
L
Sbjct: 151 IL 152
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
+N KDK G T LHLA + ++VE+LL GA +VNA + G TA D+ + +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------DVNAQDKFGKTAFDISI----D 77
Query: 237 AGDREIEEIFWSAG 250
G+ ++ EI A
Sbjct: 78 NGNEDLAEILQKAA 91
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
G L A+ G D V+ ++ D + ++DG++P+H+A+ G +++V L+K
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLK 56
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA---------Y 134
A+ GQ D VR LM + + + + TPLH AA +G +++V +L A +
Sbjct: 9 AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Query: 135 GECAEDVSV 143
G+ A D+S+
Sbjct: 68 GKTAFDISI 76
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 47 LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
+H +A G + ++ I + + +++GF+P+ A+A+GQI VV L++ + L
Sbjct: 5 VHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQL 62
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS---VQRETVLHLAVKNNQFEVVRA 163
G R++ L A KG D+V +L +C DV+ T L AV N + V+
Sbjct: 63 LGKGRESALSLACSKGYTDIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 118
Query: 164 LVD 166
L++
Sbjct: 119 LLE 121
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 110 ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIR 169
E TPL +AA G++ VV E L G + + RE+ L LA ++V+ L+D
Sbjct: 33 EGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 91
Query: 170 DVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
DV N D G T L A + V++LL GA+ + +E + SG ++D+
Sbjct: 92 DV------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETD----SGYNSMDL 139
Query: 230 LLSFPSEAGDREIEEIFWS 248
++ G R ++++ S
Sbjct: 140 AVAL----GYRSVQQVIES 154
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 171 VKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
+++EN++N D++G T L A + VVE LL +GA+
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 59
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 47 LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
+H +A G + ++ I + + +++GF+P+ A+A+GQI VV L++ + L
Sbjct: 23 VHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQL 80
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS---VQRETVLHLAVKNNQFEVVRA 163
G R++ L A KG D+V +L +C DV+ T L AV N + V+
Sbjct: 81 LGKGRESALSLACSKGYTDIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 136
Query: 164 LVD 166
L++
Sbjct: 137 LLE 139
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
TPL +AA G++ VV E L G + + RE+ L LA ++V+ L+D DV
Sbjct: 54 TPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV- 111
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232
N D G T L A + V++LL GA+ + +E + SG ++D+ ++
Sbjct: 112 -----NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETD----SGYNSMDLAVA 160
Query: 233 FPSEAGDREIEEIFWS 248
G R ++++ S
Sbjct: 161 L----GYRSVQQVIES 172
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 171 VKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
+++EN++N D++G T L A + VVE LL +GA+
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 77
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 140 DVSVQRETVLHLAVK-NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQ 198
D E VLHLAVK NQ + LVD+I ++ L+ K GNTALH A +
Sbjct: 185 DAQAPEELVLHLAVKVANQASL--PLVDFI--IQNGGHLDAKAADGNTALHYAALYNQPD 240
Query: 199 VVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
++LLL G V N +G TALD+ + +E EE+ A A
Sbjct: 241 CLKLLL------KGRALVGTVNEAGETALDI----ARKKHHKECEELLEQAQA 283
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 47 LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
+H +A G + ++ I + + +++GF+P+ A+A+GQI VV L++ + L
Sbjct: 7 VHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQL 64
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS---VQRETVLHLAVKNNQFEVVRA 163
G R++ L A KG D+V +L +C DV+ T L AV N + V+
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 164 LVD 166
L++
Sbjct: 121 LLE 123
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
TPL +AA G++ VV E L G + + RE+ L LA ++V+ L+D DV
Sbjct: 38 TPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV- 95
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232
N D G T L A + V++LL GA+ + +E + SG ++D+ ++
Sbjct: 96 -----NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETD----SGYNSMDLAVA 144
Query: 233 FPSEAGDREIEEIFWS 248
G R ++++ S
Sbjct: 145 L----GYRSVQQVIES 156
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 171 VKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
+++EN++N D++G T L A + VVE LL +GA+
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 107 QGPERKTPLHFAAIKGRVDVVSEML-SAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
Q PLH AA +G + + E L + G D + T L+ A ++V L
Sbjct: 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS--TALYWACHGGHKDIVEXLF 126
Query: 166 DWIRDVKKENI-LNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
+ NI LN ++K G+TALH A WK +V+LLL+ GA
Sbjct: 127 ------TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQ 101
S NPLH A+ G++ +++E + + +++ G + ++ A G D+V L
Sbjct: 72 SIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPN 130
Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLS 132
+ Q T LH AA KG D+V +L+
Sbjct: 131 IELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 140 DVSVQRETVLHLAVK-NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQ 198
D E VLHLAVK NQ + LVD+I ++ L+ K GNTALH A +
Sbjct: 166 DAQAPEELVLHLAVKVANQASL--PLVDFI--IQNGGHLDAKAADGNTALHYAALYNQPD 221
Query: 199 VVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
++LLL G V N +G TALD+ + +E EE+ A A
Sbjct: 222 CLKLLL------KGRALVGTVNEAGETALDI----ARKKHHKECEELLEQAQA 264
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 148 VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG 207
V+H A + + ++ L+++ DV N++D +GN LHLA + +VVE L+ H
Sbjct: 73 VIHDAARAGFLDTLQTLLEFQADV------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 208 ANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
A+ V NH G TA D+ + G E+ + + GA
Sbjct: 127 AS-----NVGHRNHKGDTACDLARLY----GRNEVVSLMQANGA 161
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 115 LHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETV---LHLAVKNNQFEVVRALVDWIRDV 171
+H AA G +D + +L E DV+++ LHLA K VV LV
Sbjct: 74 IHDAARAGFLDTLQTLL----EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK----- 124
Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLE 215
+ + ++ +G+TA LA +VV L+ ++GA + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
V+H A + + ++ L+++ DV N++D +GN LHLA + +VVE L+ H
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADV------NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
A+ V NH G TA D+ + G E+ + + GA
Sbjct: 126 TAS-----NVGHRNHKGDTACDLARLY----GRNEVVSLMQANGA 161
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGD 239
KDK G+T LHLA +VV+LLL GA +VNA + G TA D+ + + G+
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGA------DVNAQDKFGKTAFDISI----DNGN 84
Query: 240 REIEEIF 246
++ EI
Sbjct: 85 EDLAEIL 91
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
G L A+ G D V+ ++ D A + +++G +P+H+A+ NG ++VV+ L++
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLE 60
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
T LHLA +N EVV+ L++ DV N +DK G TA ++
Sbjct: 41 TPLHLAARNGHLEVVKLLLEAGADV------NAQDKFGKTAFDIS 79
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA---------Y 134
A+ GQ D VR LM + + TPLH AA G ++VV +L A +
Sbjct: 13 AARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKF 71
Query: 135 GECAEDVSV 143
G+ A D+S+
Sbjct: 72 GKTAFDISI 80
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 148 VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG 207
V+H A + + ++ L+++ DV N++D +GN LHLA + +VVE L+ H
Sbjct: 73 VIHDAARAGFLDTLQTLLEFQADV------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 208 ANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
A+ V NH G TA D+ + G E+ + + GA
Sbjct: 127 AS-----NVGHRNHKGDTACDLARLY----GRNEVVSLMQANGA 161
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 115 LHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETV---LHLAVKNNQFEVVRALVDWIRDV 171
+H AA G +D + +L E DV+++ LHLA K VV LV
Sbjct: 74 IHDAARAGFLDTLQTLL----EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK----- 124
Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLE 215
+ + ++ +G+TA LA +VV L+ ++GA + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 35/207 (16%)
Query: 59 VKEIIRLKPDFA--KEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERK--TP 114
+E++RL A N DG + +H A + +D+V+ L+ + ++ P+ + P
Sbjct: 53 TEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV---ENGANINQPDNEGWIP 109
Query: 115 LHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNN-----QFEVVRALVDWIR 169
LH AA G +D+ +E L + G V+ + +T L +A + Q EV R VD
Sbjct: 110 LHAAASCGYLDI-AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168
Query: 170 DVKKENILNMKD----------------KQGNTALHLATWKRECQVVELLLSHGANASGG 213
K+E + ++D K G TALH+A K +V++LL+
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI------QAR 222
Query: 214 LEVNATNHSGLTALDVLLSFPSEAGDR 240
+VN ++ G T L + E R
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACR 249
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 148 VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG 207
V+H A + + ++ L++ DV N++D +GN LHLA + +VVE L+ H
Sbjct: 73 VIHDAARAGFLDTLQTLLENQADV------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 208 ANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
A+ V NH G TA D+ + G E+ + + GA
Sbjct: 127 AS-----NVGHRNHKGDTACDLARLY----GRNEVVSLMQANGA 161
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 115 LHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETV---LHLAVKNNQFEVVRALVDWIRDV 171
+H AA G +D + +L E DV+++ LHLA K VV LV
Sbjct: 74 IHDAARAGFLDTLQTLL----ENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK----- 124
Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLE 215
+ + ++ +G+TA LA +VV L+ ++GA + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 84/183 (45%), Gaps = 29/183 (15%)
Query: 12 LIAAALTGDVQTLQQLF--VENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF 69
L+ ++L G+ +Q++ V++P + + + LH A GH + VK +++ F
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA----LHNAVCAGHTEIVKFLVQ----F 92
Query: 70 AKEVN---QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDV 126
VN DG++P+H A++ + V + L++ + + ++ ++ D
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV---------FAMTYSDMQTAADK 143
Query: 127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNT 186
EM Y +C++ + +E + + N V+ AL W + + ++ L MK+ T
Sbjct: 144 CEEMEEGYTQCSQFLYGVQE---KMGIMNKG--VIYAL--WDYEPQNDDELPMKEGDCMT 196
Query: 187 ALH 189
+H
Sbjct: 197 IIH 199
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 84/183 (45%), Gaps = 29/183 (15%)
Query: 12 LIAAALTGDVQTLQQLF--VENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF 69
L+ ++L G+ +Q++ V++P + + + LH A GH + VK +++ F
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA----LHNAVCAGHTEIVKFLVQ----F 92
Query: 70 AKEVN---QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDV 126
VN DG++P+H A++ + V + L++ + + ++ ++ D
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV---------FAMTYSDMQTAADK 143
Query: 127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNT 186
EM Y +C++ + +E + + N V+ AL W + + ++ L MK+ T
Sbjct: 144 CEEMEEGYTQCSQFLYGVQE---KMGIMNKG--VIYAL--WDYEPQNDDELPMKEGDCMT 196
Query: 187 ALH 189
+H
Sbjct: 197 IIH 199
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGD 239
KDK G+T LHLA +VV+LLL GA +V A + G TA D+ + + G+
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGA------DVXAQDKFGKTAFDISI----DNGN 102
Query: 240 REIEEIF 246
++ EI
Sbjct: 103 EDLAEIL 109
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
G L A+ G D V+ ++ D A + +++G +P+H+A+ NG ++VV+ L++
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLE 78
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA---------Y 134
A+ GQ D VR LM + + TPLH AA G ++VV +L A +
Sbjct: 31 AARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 135 GECAEDVSV 143
G+ A D+S+
Sbjct: 90 GKTAFDISI 98
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
T LHLA +N EVV+ L++ DV + DK G TA ++
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAGADVXAQ------DKFGKTAFDIS 97
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 42 SAGN-PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHM---ASANGQIDVVRGLM 97
S GN LH + ++ + V++++ + N+ G+SP+ + A+ Q D+ L
Sbjct: 109 SNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQ 168
Query: 98 KFDQKLCHLQGPER-KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAV 153
F + + + +T L A GRVDVV +L+ C DV+VQ + T L A
Sbjct: 169 LFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLA----CEADVNVQDDDGSTALMCAC 224
Query: 154 KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS 205
++ E+ L+ V +I ++ D+ G+TAL +A + ++ +L S
Sbjct: 225 EHGHKEIAGLLL----AVPSCDI-SLTDRDGSTALMVALDAGQSEIASMLYS 271
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 176 ILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG-----LTALDVL 230
++N+ D GNTALH + VV+ LL SG +V+ N +G LTAL L
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLD-----SGVCKVDKQNRAGYSPIMLTALATL 157
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 16/195 (8%)
Query: 56 VDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPL 115
VD V++++ + + + G++P+H A + D+V L++ L+ TP
Sbjct: 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPF 96
Query: 116 HFAAIKGRVDVVSEMLSAYGECAE----DVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171
AAI G V ++ LS + E + E ++ VK +F R +R
Sbjct: 97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 156
Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL-DVL 230
KE+ ++ K G TAL A K +V+++LL G +VNA ++ G AL L
Sbjct: 157 TKEDQERLR-KGGATALMDAAEKGHVEVLKILLD-----EMGADVNACDNMGRNALIHAL 210
Query: 231 LSFPSEAGDREIEEI 245
LS + D ++E I
Sbjct: 211 LS----SDDSDVEAI 221
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 32/239 (13%)
Query: 13 IAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVK---------EII 63
I AA+ G V+ L+ LF+ ++ F A+ YG V +K +
Sbjct: 97 ILAAIAGSVKLLK-LFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGANVNLR 154
Query: 64 RLKPDFAKEVNQDGFSPMHMASANGQIDVVRGL---MKFDQKLCHLQGPERKTPLH--FA 118
R + + + + G + + A+ G ++V++ L M D C G R +H +
Sbjct: 155 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG--RNALIHALLS 212
Query: 119 AIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKEN 175
+ V+ ++ +L +G DV+V+ E T L LAV+ +V+ L++ +E+
Sbjct: 213 SDDSDVEAITHLLLDHGA---DVNVRGERGKTPLILAVEKKHLGLVQRLLE------QEH 263
Query: 176 I-LNMKDKQGNTALHLATWKRECQVVELLLSHGANAS-GGLEVNATNHSGLTALDVLLS 232
I +N D G TAL LA + ++ ELL GA+ G L + A + + + VLLS
Sbjct: 264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNYDHSLVKVLLS 322
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 142 SVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN-TALHLATWKRECQVV 200
+V+ +L AV+N ++V+ L++ +V N ++++G T LH A +V
Sbjct: 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANV------NFQEEEGGWTPLHNAVQMSREDIV 75
Query: 201 ELLLSHGAN 209
ELLL HGA+
Sbjct: 76 ELLLRHGAD 84
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LH+AV + E+VR L D D+ K + G T LHLA + V+ELLL
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKP-----EPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 207 GANAS 211
GA+ +
Sbjct: 215 GADPT 219
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 141 VSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
V+ +T LHLAV + + L+ + L++++ G TALHLA E V
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGF---SAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 201 ELLLSHGA 208
E L + GA
Sbjct: 62 EKLYAAGA 69
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 74 NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA 133
N DG +P+H+A + ++VR L L + +TPLH A V+ +L A
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LH+AV + E+VR L D D+ K + G T LHLA + V+ELLL
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKP-----EPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 207 GANAS 211
GA+ +
Sbjct: 215 GADPT 219
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 141 VSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
V+ +T LHLAV + + L+ + L++++ G TALHLA E V
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGF---SAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 201 ELLLSHGA 208
E L + GA
Sbjct: 62 EKLYAAGA 69
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 74 NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA 133
N DG +P+H+A + ++VR L L + +TPLH A V+ +L A
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 56 VDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPL 115
VD V++++ + + + G++P+H A + D+V L++ L+ TP
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPF 76
Query: 116 HFAAIKGRVDVVSEMLSAYGECAE----DVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171
AAI G V ++ LS + E + E ++ VK +F R +R
Sbjct: 77 LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136
Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
KE+ ++ K G TAL A K +V+++LL G +VNA ++ G AL
Sbjct: 137 TKEDQERLR-KGGATALMDAAEKGHVEVLKILLD-----EMGADVNACDNMGRNAL 186
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 29/182 (15%)
Query: 50 ASAYGHVDFVK---------EIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGL---M 97
A+ YG V +K + R + + + + G + + A+ G ++V++ L M
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171
Query: 98 KFDQKLCHLQGPERKTPLH--FAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLA 152
D C G R +H ++ V+ ++ +L +G DV+V+ E T L LA
Sbjct: 172 GADVNACDNMG--RNALIHALLSSDDSDVEAITHLLLDHGA---DVNVRGERGKTPLILA 226
Query: 153 VKNNQFEVVRALVDWIRDVKKENI-LNMKDKQGNTALHLATWKRECQVVELLLSHGANAS 211
V+ +V+ L++ +E+I +N D G TAL LA + ++ ELL GA+
Sbjct: 227 VEKKHLGLVQRLLE------QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Query: 212 GG 213
G
Sbjct: 281 CG 282
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 142 SVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN-TALHLATWKRECQVV 200
+V+ +L AV+N ++V+ L++ +V N ++++G T LH A +V
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANV------NFQEEEGGWTPLHNAVQMSREDIV 55
Query: 201 ELLLSHGAN 209
ELLL HGA+
Sbjct: 56 ELLLRHGAD 64
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 46/187 (24%)
Query: 59 VKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFA 118
VKEI++ EV+ +G +P+++A N I++ + L+ + +LQ +P +A
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA 79
Query: 119 AIKGRVDVVSEML----------SAYGECA---------------------EDVSVQRE- 146
+GR ++++ ML + YG A ED+ Q +
Sbjct: 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF 139
Query: 147 --TVLHLAV---KNNQF--EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQV 199
T L AV + NQ ++V+ L++ D ++KD G TA+ A K ++
Sbjct: 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQ------SIKDNSGRTAMDYANQKGYTEI 193
Query: 200 VELLLSH 206
++L +
Sbjct: 194 SKILAQY 200
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENI---------- 176
V E+L ++V + T L++AV NN E+ +AL+D D+ +N
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80
Query: 177 ------------------LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA 218
LN ++ G AL A K V+LLL G +++
Sbjct: 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-----DIDF 135
Query: 219 TNHSGLTAL 227
N G TAL
Sbjct: 136 QNDFGYTAL 144
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 26/148 (17%)
Query: 57 DFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLH 116
DF K + R+K D + +H+A+ GQ D VR L++ +Q T LH
Sbjct: 7 DFPK-LNRIKSD------DENXEKIHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALH 58
Query: 117 FAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKK--E 174
A G VD ++ L++ GE Q+ +HLAV N+ ++V ALV+ ++ + E
Sbjct: 59 LACKFGCVDT-AKYLASVGEVHSLWHGQKP--IHLAVXANKTDLVVALVEGAKERGQXPE 115
Query: 175 NILNMKDK-------------QGNTALH 189
++LN D+ +G TALH
Sbjct: 116 SLLNECDEREVNEIGSHVKHCKGQTALH 143
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 146 ETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS 205
ET LHLAV++ + +VD++ V+ L+ + +G+TALH + ++LLL
Sbjct: 170 ETALHLAVRSVDRTSLH-IVDFL--VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL- 225
Query: 206 HGANASGGLEVNATNHSGLTALDV 229
G + N SG T LD+
Sbjct: 226 -----RGKASIEIANESGETPLDI 244
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 183 QGNTALHLATWKRECQVVELLLSHGAN 209
+G++ALH+A KR Q V+LL+ +GAN
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGAN 120
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 183 QGNTALHLATWKRECQVVELLLSHGAN 209
QG++ALH+A KR Q V+LL+ +GA+
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGAD 128
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 183 QGNTALHLATWKRECQVVELLLSHGAN 209
QG++ALH+A KR Q V+LL+ +GA+
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGAD 115
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 26/130 (20%)
Query: 113 TPLHFAAIKG---------------RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ 157
TPL AA++G V+S++L+ E + ET LHLA + +
Sbjct: 4 TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 158 FEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVN 217
+ + L+D D N +D G T LH A V ++LL + A +N
Sbjct: 64 ADAAKRLLDAGADA------NSQDNTGRTPLHAAVAADAMGVFQILLRNRAT-----NLN 112
Query: 218 ATNHSGLTAL 227
A H G T L
Sbjct: 113 ARMHDGTTPL 122
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
+N D G TALH A + V +LL H AN
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHAN 176
>pdb|3G6J|E Chain E, C3b In Complex With A C3b Specific Fab
pdb|3G6J|G Chain G, C3b In Complex With A C3b Specific Fab
Length = 214
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 9 DRRLIAAALTGDVQTLQQLFVENP-----LILHTPAFASAGNPLHVASAYGHVDFVKEII 63
DR I + DV T + + P L++++ +F +G P + + DF I
Sbjct: 17 DRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTIS 76
Query: 64 RLKP-DFAKEVNQDGFSPMHMASANGQIDVVR 94
L+P DFA Q ++ + ++++ R
Sbjct: 77 SLQPEDFATYYCQQSYATLPTFEQGTKVEIKR 108
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 32/152 (21%)
Query: 76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYG 135
DGF+P+ +AS +G GL + + E P V+S+ +
Sbjct: 10 DGFTPLMIASCSGG-----GLETGNSE------EEEDAPA----------VISDFIYQGA 48
Query: 136 ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKR 195
ET LHLA + ++ + + L++ D N++D G T LH A
Sbjct: 49 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA------NIQDNMGRTPLHAAVSAD 102
Query: 196 ECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
V ++L+ + A +++A H G T L
Sbjct: 103 AQGVFQILIRNRAT-----DLDARMHDGTTPL 129
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 54 GHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERK- 112
G +D VK+ + D + + + G P+H A+ GQ++++ L+ K + P++
Sbjct: 18 GDLDEVKDYVAKGEDVNRTL-EGGRKPLHYAADCGQLEILEFLL---LKGADINAPDKHH 73
Query: 113 -TPLHFAAIKGRVDVVSEMLS 132
TPL A +G V V +LS
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLS 94
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 54 GHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERK- 112
G +D VK+ + D + + + G P+H A+ GQ++++ L+ K + P++
Sbjct: 13 GDLDEVKDYVAKGEDVNRTL-EGGRKPLHYAADCGQLEILEFLL---LKGADINAPDKHH 68
Query: 113 -TPLHFAAIKGRVDVVSEMLS 132
TPL A +G V V +LS
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLS 89
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
LH A Q E++ L+ +K +I N DK T L A ++ V+LLLS GA
Sbjct: 39 LHYAADCGQLEILEFLL-----LKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 209 NAS-----GGLEVNATNHSGLTAL 227
+ + G + AT++ + AL
Sbjct: 93 DKTVKGPDGLTALEATDNQAIKAL 116
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 8/182 (4%)
Query: 28 FVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN 87
F+ LH + LH+A+AY D K ++ D + N G +P+H A +
Sbjct: 42 FIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSA 100
Query: 88 GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRET 147
V + L++ + + TPL AA ++ ++++++ + V ++
Sbjct: 101 DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKS 159
Query: 148 VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG 207
LH A N + L +K +M++ + T L LA + + ++LL H
Sbjct: 160 ALHWAAAVNNVDAAVVL------LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Query: 208 AN 209
AN
Sbjct: 214 AN 215
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 33/169 (19%)
Query: 76 DGFSPMHMASANG----------QIDVVRGLMKFDQKLCHLQGPERK---TPLHFAAIKG 122
DGF+P+ +AS +G + D + F + L + T LH AA
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 123 RVDVVSEMLSAYGECAEDVSVQR---ETVLHLAVKNNQFEVVRALVDWIRDVKKENILNM 179
R D +L E + D ++Q T LH AV + V + L+ + L+
Sbjct: 69 RSDAAKRLL----EASADANIQDNMGRTPLHAAVSADAQGVFQILI-----RNRATDLDA 119
Query: 180 KDKQGNTALHLAT-WKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
+ G T L LA E + +L+ SH +VNA + G +AL
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHA-------DVNAVDDLGKSAL 161
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 32/152 (21%)
Query: 76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYG 135
DGF+P+ +AS +G GL + + E P V+S+ +
Sbjct: 9 DGFTPLMIASCSGG-----GLETGNSE------EEEDAPA----------VISDFIYQGA 47
Query: 136 ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKR 195
ET LHLA + ++ + + L++ D N++D G T LH A
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA------NIQDNMGRTPLHAAVSAD 101
Query: 196 ECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
V ++L+ + A +++A H G T L
Sbjct: 102 AQGVFQILIRNRAT-----DLDARMHDGTTPL 128
>pdb|3GUW|A Chain A, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|B Chain B, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|C Chain C, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|D Chain D, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
Length = 261
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 61 EIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG 108
E+++LK + KEV F P+ IDV R L +F+ C G
Sbjct: 16 ELVKLKENGIKEVCSLAFFPVKPKYPQTXIDVFRKLTEFEPLRCEAAG 63
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
T LH A + + +V+ LV +K + + +D+ G T + LA + +VV L+
Sbjct: 281 TALHYAAQVSNXPIVKYLVG-----EKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQ 335
Query: 207 GANASGGLEVNATNHSG 223
GA+ V+AT+H+
Sbjct: 336 GASVEA---VDATDHTA 349
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 47 LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
LH A+ + VK ++ K + ++DG +P+ +A+ G+I+VV L++
Sbjct: 283 LHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 175 NILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228
N+LN +D G+T L++A +V+ LL +GA+ N SGL +D
Sbjct: 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF------IANKSGLRPVD 321
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAY 134
+DG SP + S+ DVV E +TP AA K +S++L
Sbjct: 23 KDGHSPSWVPSSYIAADVV---------------SEYETPWWTAARKADEQALSQLLEDR 67
Query: 135 GECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN-TALHLATW 193
A D + + T L + VR L + D L+ +D +G TALH+A
Sbjct: 68 DVDAVDENGR--TALLFVAGLGSDKCVRLLAEAGAD------LDHRDMRGGLTALHMAAG 119
Query: 194 KRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
+VVE L+ GA+ + + GLTAL++
Sbjct: 120 YVRPEVVEALVELGAD------IEVEDERGLTALEL 149
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 171 VKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL 230
VK+ N + +++G TALH A +V+ L++ GAN VN+ + G T L
Sbjct: 41 VKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN------VNSPDSHGWTPLHCA 94
Query: 231 LS 232
S
Sbjct: 95 AS 96
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAY 134
+DG SP + S+ DVV E +TP AA K +S++L
Sbjct: 24 KDGHSPSWVPSSYIAADVV---------------SEYETPWWTAARKADEQALSQLLEDR 68
Query: 135 GECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN-TALHLATW 193
A D + + T L + VR L + D L+ +D +G TALH+A
Sbjct: 69 DVDAVDENGR--TALLFVAGLGSDKCVRLLAEAGAD------LDHRDMRGGLTALHMAAG 120
Query: 194 KRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
+VVE L+ GA+ + + GLTAL++
Sbjct: 121 YVRPEVVEALVELGAD------IEVEDERGLTALEL 150
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 80/193 (41%), Gaps = 12/193 (6%)
Query: 19 GDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGF 78
GD + F+ LH + LH+A+ Y D K ++ D + N G
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GR 59
Query: 79 SPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGE-- 136
+P+H A + V + L++ + + TPL AA ++ ++++++ +
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119
Query: 137 CAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRE 196
+D+ ++ LH A N + L +K +M++ + T L LA +
Sbjct: 120 AVDDLG---KSALHWAAAVNNVDAAVVL------LKNGANKDMQNNREETPLFLAAREGS 170
Query: 197 CQVVELLLSHGAN 209
+ ++LL H AN
Sbjct: 171 YETAKVLLDHFAN 183
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS--ANGQIDV---VRGL 96
+AG P V G++ F+K+ RL P+ +++ S H NGQ+D VRG+
Sbjct: 33 TAGAPPAV-RIDGYIKFLKDFPRLTPEDTQKLAYSVMSEKHRQKLEENGQVDFSFGVRGV 91
Query: 97 MKFDQKLCHLQG 108
+F + + +G
Sbjct: 92 GRFRANVFYQRG 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,129,872
Number of Sequences: 62578
Number of extensions: 523356
Number of successful extensions: 1854
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 336
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)