Query 012836
Match_columns 455
No_of_seqs 407 out of 3747
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:10:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 1.6E-39 5.5E-44 302.4 21.6 230 2-250 4-246 (253)
2 3aji_A 26S proteasome non-ATPa 100.0 5.2E-39 1.8E-43 294.3 23.3 226 6-251 4-229 (231)
3 1k1a_A B-cell lymphoma 3-encod 100.0 1.1E-38 3.9E-43 293.7 22.0 229 2-251 3-240 (241)
4 2dzn_A Probable 26S proteasome 100.0 2.4E-38 8.3E-43 289.1 23.2 219 8-248 2-226 (228)
5 2xai_A ASB-9, ankyrin repeat a 100.0 5.2E-38 1.8E-42 293.6 23.9 222 7-253 2-223 (261)
6 3b7b_A Euchromatic histone-lys 100.0 6.3E-38 2.2E-42 288.2 23.9 215 2-232 5-219 (237)
7 1oy3_D Transcription factor in 100.0 2.9E-38 1E-42 297.8 21.6 218 1-232 2-267 (282)
8 3d9h_A CDNA FLJ77766, highly s 100.0 8.9E-38 3E-42 295.9 24.4 224 3-251 54-278 (285)
9 1wdy_A 2-5A-dependent ribonucl 100.0 3.6E-37 1.2E-41 290.3 28.1 230 5-254 36-280 (285)
10 3ljn_A Hypothetical protein; a 100.0 1E-37 3.5E-42 305.8 22.3 234 3-254 15-271 (364)
11 4b93_B Ankyrin repeat domain-c 100.0 4.1E-38 1.4E-42 295.4 17.0 214 3-231 6-226 (269)
12 3d9h_A CDNA FLJ77766, highly s 100.0 8.2E-37 2.8E-41 289.3 25.4 244 4-277 11-263 (285)
13 3eu9_A Huntingtin-interacting 100.0 6.9E-37 2.3E-41 281.1 24.1 234 1-254 2-237 (240)
14 3utm_A Tankyrase-1; tankyrase, 100.0 9E-37 3.1E-41 296.6 25.0 243 5-276 21-320 (351)
15 1wdy_A 2-5A-dependent ribonucl 100.0 2E-36 7E-41 285.2 26.3 243 6-277 3-261 (285)
16 4g8k_A 2-5A-dependent ribonucl 100.0 2.1E-36 7.1E-41 293.4 25.7 230 7-253 24-299 (337)
17 2f8y_A Notch homolog 1, transl 100.0 9.8E-37 3.3E-41 277.6 21.1 217 19-254 2-218 (223)
18 1n11_A Ankyrin; clathrin, BAND 100.0 5.2E-36 1.8E-40 301.0 27.6 240 6-275 144-383 (437)
19 1s70_B 130 kDa myosin-binding 100.0 9.4E-37 3.2E-41 290.4 19.7 211 5-231 37-273 (299)
20 2fo1_E LIN-12 protein; beta-ba 100.0 1.1E-36 3.7E-41 299.6 19.5 227 6-253 123-372 (373)
21 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-35 3.7E-40 289.0 26.1 228 3-254 53-336 (351)
22 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-35 4E-40 298.4 27.2 229 3-252 9-237 (437)
23 1oy3_D Transcription factor in 100.0 1.9E-35 6.6E-40 278.5 22.6 214 40-279 6-268 (282)
24 3kea_A K1L; tropism, ANK repea 100.0 1.1E-35 3.7E-40 281.5 20.2 222 2-254 25-248 (285)
25 2dzn_A Probable 26S proteasome 100.0 1.7E-34 5.7E-39 263.6 24.0 210 43-277 2-216 (228)
26 1yyh_A HN1;, notch 1, ankyrin 100.0 2.4E-35 8.2E-40 274.2 18.3 211 41-277 8-231 (253)
27 3b7b_A Euchromatic histone-lys 100.0 4.1E-34 1.4E-38 262.7 24.4 212 40-278 8-219 (237)
28 2rfa_A Transient receptor pote 100.0 1.8E-34 6.2E-39 264.3 21.3 198 7-208 2-221 (232)
29 2f8y_A Notch homolog 1, transl 100.0 6.3E-34 2.2E-38 259.0 24.0 196 4-209 21-216 (223)
30 2rfa_A Transient receptor pote 100.0 3.2E-34 1.1E-38 262.7 21.9 202 42-254 2-224 (232)
31 4g8k_A 2-5A-dependent ribonucl 100.0 1E-33 3.5E-38 274.4 26.2 226 6-254 57-328 (337)
32 2xai_A ASB-9, ankyrin repeat a 100.0 5.3E-34 1.8E-38 266.4 22.9 206 42-277 2-207 (261)
33 2fo1_E LIN-12 protein; beta-ba 100.0 2.1E-35 7E-40 290.5 13.8 250 3-277 89-354 (373)
34 3hra_A Ankyrin repeat family p 100.0 7.2E-34 2.4E-38 254.3 21.8 191 8-206 5-200 (201)
35 1k1a_A B-cell lymphoma 3-encod 100.0 1.4E-33 4.9E-38 259.5 24.4 212 40-278 6-225 (241)
36 3ljn_A Hypothetical protein; a 100.0 1.6E-34 5.6E-39 283.0 19.2 234 2-252 47-314 (364)
37 3hra_A Ankyrin repeat family p 100.0 9.2E-34 3.2E-38 253.6 22.2 180 42-234 4-189 (201)
38 1ikn_D Protein (I-kappa-B-alph 100.0 1.1E-35 3.7E-40 273.4 9.7 217 3-231 3-227 (236)
39 3aji_A 26S proteasome non-ATPa 100.0 1.1E-33 3.8E-38 258.8 23.0 209 42-277 5-213 (231)
40 1ikn_D Protein (I-kappa-B-alph 100.0 1E-34 3.4E-39 266.9 14.5 200 41-257 6-214 (236)
41 1s70_B 130 kDa myosin-binding 100.0 2.2E-33 7.6E-38 267.1 22.7 243 14-278 4-274 (299)
42 3kea_A K1L; tropism, ANK repea 100.0 6.7E-34 2.3E-38 269.2 17.5 214 15-254 6-222 (285)
43 2pnn_A Transient receptor pote 100.0 2.8E-34 9.7E-39 269.9 14.9 218 3-226 8-270 (273)
44 2etb_A Transient receptor pote 100.0 2E-33 6.8E-38 261.5 14.8 195 43-255 2-249 (256)
45 4gpm_A Engineered protein OR26 100.0 1.4E-32 4.9E-37 238.9 19.1 155 45-208 6-160 (169)
46 4b93_B Ankyrin repeat domain-c 100.0 6.5E-33 2.2E-37 260.0 18.0 209 42-277 10-226 (269)
47 2etb_A Transient receptor pote 100.0 9.5E-33 3.2E-37 256.9 17.9 200 8-208 2-245 (256)
48 3jxi_A Vanilloid receptor-rela 100.0 2.1E-32 7.3E-37 255.1 15.3 202 6-208 3-249 (260)
49 2pnn_A Transient receptor pote 100.0 2.1E-32 7.2E-37 257.1 14.8 195 41-252 11-258 (273)
50 3eu9_A Huntingtin-interacting 100.0 2.8E-31 9.6E-36 243.6 21.7 197 2-208 36-234 (240)
51 4gpm_A Engineered protein OR26 100.0 2.1E-31 7E-36 231.6 18.6 157 79-253 6-162 (169)
52 3jxi_A Vanilloid receptor-rela 100.0 5.5E-32 1.9E-36 252.2 13.4 196 42-255 4-253 (260)
53 3v30_A DNA-binding protein rfx 100.0 2.7E-31 9.2E-36 231.7 16.2 170 43-226 2-171 (172)
54 1sw6_A Regulatory protein SWI6 100.0 1.2E-31 4.1E-36 258.8 13.9 200 11-232 100-325 (327)
55 4hbd_A KN motif and ankyrin re 100.0 3.6E-31 1.2E-35 249.2 12.2 192 8-207 76-273 (276)
56 4hbd_A KN motif and ankyrin re 100.0 1.9E-30 6.5E-35 244.3 13.4 192 43-251 76-274 (276)
57 2rfm_A Putative ankyrin repeat 100.0 6.1E-30 2.1E-34 227.3 15.8 159 40-207 32-190 (192)
58 3v31_A Ankyrin repeat family A 100.0 1.5E-29 5.1E-34 219.5 17.5 158 42-208 2-159 (167)
59 1ihb_A P18-INK4C(INK6), cyclin 100.0 9.2E-30 3.1E-34 219.5 16.0 158 42-208 4-161 (162)
60 1sw6_A Regulatory protein SWI6 100.0 1.4E-30 4.7E-35 251.4 12.0 240 3-276 47-323 (327)
61 3v30_A DNA-binding protein rfx 100.0 2.5E-29 8.6E-34 219.1 18.4 169 9-187 3-171 (172)
62 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.7E-29 1.3E-33 217.6 18.9 157 42-207 13-169 (169)
63 2rfm_A Putative ankyrin repeat 100.0 1.6E-29 5.4E-34 224.6 16.0 163 70-250 28-190 (192)
64 3v31_A Ankyrin repeat family A 100.0 7.5E-29 2.6E-33 215.0 17.8 162 76-255 2-163 (167)
65 3twr_A Tankyrase-2; ankyrin re 100.0 1.5E-29 5.2E-34 219.0 12.8 158 42-208 7-164 (165)
66 3f6q_A Integrin-linked protein 100.0 3.1E-29 1.1E-33 220.1 14.6 168 42-223 4-171 (179)
67 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.1E-28 3.8E-33 212.6 16.2 161 5-170 2-162 (162)
68 1awc_B Protein (GA binding pro 100.0 2.3E-28 7.7E-33 208.9 17.9 150 44-203 3-152 (153)
69 2y1l_E Darpin-8.4; hydrolase-i 100.0 2E-28 6.7E-33 213.0 17.3 161 72-250 9-169 (169)
70 3twr_A Tankyrase-2; ankyrin re 100.0 8.2E-29 2.8E-33 214.3 14.5 161 73-251 4-164 (165)
71 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.7E-28 5.8E-33 210.2 15.9 154 43-206 2-155 (156)
72 2vge_A RELA-associated inhibit 100.0 4E-30 1.4E-34 235.1 3.2 201 24-244 1-205 (229)
73 3f6q_A Integrin-linked protein 100.0 5.1E-28 1.7E-32 212.4 15.6 163 75-254 3-165 (179)
74 1awc_B Protein (GA binding pro 100.0 1.6E-27 5.4E-32 203.6 17.6 151 8-164 2-152 (153)
75 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.3E-27 7.8E-32 203.2 16.6 155 7-167 1-155 (156)
76 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.8E-28 9.6E-33 224.5 9.1 174 42-231 4-189 (239)
77 2vge_A RELA-associated inhibit 99.9 7.8E-30 2.7E-34 233.2 -4.0 190 3-204 16-208 (229)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7E-28 2.4E-32 221.8 8.7 218 6-231 3-226 (239)
79 2aja_A Ankyrin repeat family p 99.9 1.9E-28 6.7E-33 239.4 4.7 156 6-171 90-251 (376)
80 1bi7_B P16INK4A, MTS1, multipl 99.9 2.3E-26 7.8E-31 197.2 10.7 145 71-230 6-151 (156)
81 3t8k_A Uncharacterized protein 99.9 1.1E-26 3.7E-31 205.1 8.5 156 43-208 6-178 (186)
82 1d9s_A Cyclin-dependent kinase 99.9 8.3E-26 2.8E-30 189.0 11.7 130 70-208 5-135 (136)
83 2aja_A Ankyrin repeat family p 99.9 3.3E-27 1.1E-31 230.7 3.4 176 10-209 67-250 (376)
84 3t8k_A Uncharacterized protein 99.9 5.8E-26 2E-30 200.4 9.2 159 8-171 6-180 (186)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 1.7E-25 5.8E-30 191.7 9.8 141 41-191 10-151 (156)
86 1d9s_A Cyclin-dependent kinase 99.9 1.3E-24 4.5E-29 181.6 13.0 126 41-170 10-136 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.5E-24 1.2E-28 175.8 15.1 125 76-208 1-125 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 1.7E-24 5.8E-29 180.9 12.8 125 75-207 12-136 (136)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.3E-23 4.3E-28 172.5 15.1 125 43-170 2-126 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 7.9E-24 2.7E-28 176.9 13.7 124 42-168 13-136 (136)
91 3c5r_A BARD-1, BRCA1-associate 99.9 7.2E-24 2.4E-28 177.3 7.5 129 72-208 5-133 (137)
92 3ehr_A Osteoclast-stimulating 99.9 8.9E-24 3E-28 191.9 8.3 140 71-223 67-206 (222)
93 3deo_A Signal recognition part 99.9 4.6E-23 1.6E-27 181.4 11.8 138 42-206 43-181 (183)
94 3c5r_A BARD-1, BRCA1-associate 99.9 3.4E-23 1.2E-27 173.2 10.1 128 106-250 5-132 (137)
95 3ui2_A Signal recognition part 99.9 4.4E-23 1.5E-27 190.3 11.6 140 42-208 44-184 (244)
96 2b0o_E UPLC1; arfgap, structur 99.9 1.5E-22 5.1E-27 192.4 14.7 138 77-233 151-296 (301)
97 3deo_A Signal recognition part 99.9 1.4E-22 4.9E-27 178.3 10.8 141 73-249 40-181 (183)
98 3aaa_C Myotrophin, protein V-1 99.9 1.3E-22 4.3E-27 166.3 9.1 108 76-191 6-113 (123)
99 3aaa_C Myotrophin, protein V-1 99.9 5.6E-22 1.9E-26 162.5 12.3 110 108-230 4-113 (123)
100 3ui2_A Signal recognition part 99.9 3.5E-22 1.2E-26 184.2 12.0 144 5-171 42-186 (244)
101 3ehr_A Osteoclast-stimulating 99.9 3.8E-22 1.3E-26 181.1 9.5 127 42-171 72-199 (222)
102 2b0o_E UPLC1; arfgap, structur 99.9 9.5E-22 3.3E-26 186.9 11.7 141 43-197 151-299 (301)
103 1dcq_A PYK2-associated protein 99.9 1.7E-21 5.7E-26 183.1 12.8 125 77-208 130-262 (278)
104 3jue_A Arfgap with coiled-coil 99.8 5.1E-21 1.8E-25 186.2 12.3 147 76-233 198-347 (368)
105 1dcq_A PYK2-associated protein 99.8 2.6E-20 8.8E-25 175.0 14.3 125 112-253 131-264 (278)
106 3jue_A Arfgap with coiled-coil 99.8 3.3E-20 1.1E-24 180.5 14.7 147 43-195 199-348 (368)
107 3lvq_E ARF-GAP with SH3 domain 99.8 3.2E-20 1.1E-24 189.0 13.8 134 78-231 133-275 (497)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5.5E-20 1.9E-24 142.6 11.2 92 110-208 1-92 (93)
109 3lvq_E ARF-GAP with SH3 domain 99.8 6.5E-20 2.2E-24 186.6 14.4 136 43-193 132-276 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 8.3E-20 2.8E-24 141.6 11.0 90 77-168 2-91 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 4.1E-20 1.4E-24 149.3 7.5 109 106-227 4-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 9.9E-20 3.4E-24 147.0 7.0 107 73-187 5-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 4.7E-17 1.6E-21 130.2 9.3 87 74-162 21-107 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 6.7E-17 2.3E-21 129.3 9.0 92 105-203 18-109 (110)
115 3mkq_B Coatomer subunit alpha; 58.3 60 0.002 27.0 9.0 134 6-166 6-139 (177)
116 3zrh_A Ubiquitin thioesterase 43.5 49 0.0017 31.4 6.6 50 15-64 29-90 (454)
117 3mkq_B Coatomer subunit alpha; 42.9 1.4E+02 0.0049 24.7 9.4 131 43-206 8-140 (177)
118 1gp8_A Protein (scaffolding pr 42.6 11 0.00036 22.4 1.3 22 8-29 13-34 (40)
119 3gvo_A Pumilio 2, pumilio homo 27.8 81 0.0028 29.2 5.7 196 8-206 37-239 (351)
120 2k21_A Potassium voltage-gated 23.9 94 0.0032 24.0 4.1 29 421-449 55-83 (138)
121 1pi7_A VPU protein, U ORF prot 23.5 1.2E+02 0.0041 17.8 4.0 23 425-447 11-33 (36)
122 2rdd_B UPF0092 membrane protei 22.9 1.2E+02 0.0039 17.8 3.6 15 436-450 18-32 (37)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.6e-39 Score=302.41 Aligned_cols=230 Identities=18% Similarity=0.223 Sum_probs=180.4
Q ss_pred cccCcccCHHHHHHHHcC-------------CHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCc
Q 012836 2 TSYSTRMDRRLIAAALTG-------------DVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPD 68 (455)
Q Consensus 2 t~~~~~~~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 68 (455)
+..|..|.||||.|+..| +.++++.|++.++......+ ..|.||||+|+..|+.+++++|++.+.+
T Consensus 4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD-RTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp ------------------------------------------------CCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 457889999999999987 99999999999887655433 3599999999999999999999999988
Q ss_pred chhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcH
Q 012836 69 FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETV 148 (455)
Q Consensus 69 ~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~ 148 (455)
.+..|..|+||||+|+..|+.+++++|++.++...+.++.+|.||||+|+..|+.+++++|++. +.+++..|..|+||
T Consensus 83 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~ 160 (253)
T 1yyh_A 83 -ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSA 160 (253)
T ss_dssp -TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBCTTSCBH
T ss_pred -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence 5777999999999999999999999999999855588999999999999999999999999997 88999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHH
Q 012836 149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228 (455)
Q Consensus 149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~ 228 (455)
||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|+||+|
T Consensus 161 L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga------~~~~~d~~g~tpl~ 228 (253)
T 1yyh_A 161 LHWAAAVNNVDAAVVLLKNGANK------DMQNNREETPLFLAAREGSYETAKVLLDHFA------NRDITDHMDRLPRD 228 (253)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC------CccccccCCCCHHH
Confidence 99999999999999999999887 8999999999999999999999999999999 89999999999999
Q ss_pred HHhhCCCCcCchhHHHHHHHhc
Q 012836 229 VLLSFPSEAGDREIEEIFWSAG 250 (455)
Q Consensus 229 ~a~~~~~~~~~~~i~~~L~~~g 250 (455)
+|.. .++.+|+++|.+..
T Consensus 229 ~A~~----~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 229 IAQE----RMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHH----TTCHHHHHHHHC--
T ss_pred HHHH----cCCHHHHHHHHHHh
Confidence 9974 58999999998643
No 2
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.2e-39 Score=294.30 Aligned_cols=226 Identities=22% Similarity=0.358 Sum_probs=209.2
Q ss_pred cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836 6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS 85 (455)
Q Consensus 6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa 85 (455)
..++++||.|+..|+.+.++.++++++......+ ..|.||||+|+..|+.+++++|++.+.+ .+..|..|+||||+|+
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTD-QDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAA 81 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCC-CCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHH
Confidence 3467999999999999999999999877654443 4599999999999999999999999887 5777999999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 012836 86 ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165 (455)
Q Consensus 86 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll 165 (455)
..|+.+++++|++++.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999999999999998 78899999999999999999999999997 8889999999999999999999999999999
Q ss_pred HHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHH
Q 012836 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEI 245 (455)
Q Consensus 166 ~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~ 245 (455)
++|+++ +.+|..|+||||+|+..++.+++++|+++|+ +++.+|..|.||+++|. ..++.+++++
T Consensus 160 ~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~----~~~~~~i~~l 223 (231)
T 3aji_A 160 FYKAST------NIQDTEGNTPLHLACDEERVEEAKFLVTQGA------SIYIENKEEKTPLQVAK----GGLGLILKRL 223 (231)
T ss_dssp HTTCCS------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHSC----HHHHHHHHHH
T ss_pred hcCCCc------cccCCCCCCHHHHHHHCCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHH----hhHHHHHHHH
Confidence 998887 8899999999999999999999999999999 88999999999999994 4578899999
Q ss_pred HHHhcc
Q 012836 246 FWSAGA 251 (455)
Q Consensus 246 L~~~ga 251 (455)
|.++|+
T Consensus 224 L~~~~a 229 (231)
T 3aji_A 224 AEGEEA 229 (231)
T ss_dssp HHHHHH
T ss_pred Hccccc
Confidence 999887
No 3
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.1e-38 Score=293.72 Aligned_cols=229 Identities=21% Similarity=0.207 Sum_probs=199.5
Q ss_pred cccCcccCHHHHHHHHcCCHHHHHHHHh----cCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCC
Q 012836 2 TSYSTRMDRRLIAAALTGDVQTLQQLFV----ENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDG 77 (455)
Q Consensus 2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g 77 (455)
+..|+.|+|+||.|+..|+.+.++.|++ .+.... .. +..|.||||+|+..|+.+++++|++.+.+ .+..|..|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g 79 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IY-NNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHG 79 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cc-cccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCC
Confidence 5678999999999999999999999997 333332 22 33599999999999999999999999987 56779999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCc----cccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccc-cCCCcHHHHH
Q 012836 78 FSPMHMASANGQIDVVRGLMKFDQ----KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS-VQRETVLHLA 152 (455)
Q Consensus 78 ~tpLh~Aa~~g~~~iv~~Ll~~~~----~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A 152 (455)
.||||+|+..|+.+++++|++.++ +. +..|..|.||||+|+..|+.+++++|++. +.+++..+ ..|+||||+|
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A 157 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHA 157 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHH
Confidence 999999999999999999999987 44 77889999999999999999999999998 78888888 7899999999
Q ss_pred HHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhh
Q 012836 153 VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232 (455)
Q Consensus 153 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~ 232 (455)
+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|.
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~- 224 (241)
T 1k1a_A 158 VENNSLSMVQLLLQHGANV------NAQMYSGSSALHSASGRGLLPLVRTLVRSGA------DSSLKNCHNDTPLMVAR- 224 (241)
T ss_dssp HHTTCHHHHHHHHHTTCCT------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCTTTTCS-
T ss_pred HHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC------CCCCcCCCCCCHHHHHH-
Confidence 9999999999999999887 8999999999999999999999999999999 89999999999999994
Q ss_pred CCCCcCchhHHHHHHHhcc
Q 012836 233 FPSEAGDREIEEIFWSAGA 251 (455)
Q Consensus 233 ~~~~~~~~~i~~~L~~~ga 251 (455)
..+..++++.|.+.++
T Consensus 225 ---~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 225 ---SRRVIDILRGKATRPA 240 (241)
T ss_dssp ---SHHHHHHHTC------
T ss_pred ---hcCcHHHHhhhccCCC
Confidence 5578888888877654
No 4
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.4e-38 Score=289.12 Aligned_cols=219 Identities=22% Similarity=0.314 Sum_probs=198.4
Q ss_pred cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC--CcchhhhcCCCCcHHHHHH
Q 012836 8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLK--PDFAKEVNQDGFSPMHMAS 85 (455)
Q Consensus 8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpLh~Aa 85 (455)
|+||||.|++.|+.+.++.|+++++......+ ..|.||||+|+..|+.+++++|++.+ .+.....+..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 68999999999999999999999887665443 45999999999999999999999998 5543437889999999999
Q ss_pred HcCCHHHHHHHHhcC--ccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHH
Q 012836 86 ANGQIDVVRGLMKFD--QKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163 (455)
Q Consensus 86 ~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~ 163 (455)
..|+.+++++|++.+ .+. +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999998 666 77899999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHh-hhhcccccccccCCCCCcHHHHHHhcCChHHHHHHH-hcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchh
Q 012836 164 LVDWI-RDVKKENILNMKDKQGNTALHLATWKRECQVVELLL-SHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDRE 241 (455)
Q Consensus 164 Ll~~g-~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll-~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~ 241 (455)
|++.| .++ +.+|..|+||||+|+..|+.+++++|+ +.|+ +++.+|.+|.||+|+|. ..+
T Consensus 159 Ll~~g~~~~------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga------~~~~~~~~g~t~l~~A~-------~~~ 219 (228)
T 2dzn_A 159 LCGLGKSAV------NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA------EYDLVDNKGAKAEDVAL-------NEQ 219 (228)
T ss_dssp HHTTTCCCS------CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC------CSCCBCTTSCBGGGGCS-------STT
T ss_pred HHhcCcccc------cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCccCCCCCcHHHHHH-------HHH
Confidence 99988 665 889999999999999999999999999 8898 89999999999999994 346
Q ss_pred HHHHHHH
Q 012836 242 IEEIFWS 248 (455)
Q Consensus 242 i~~~L~~ 248 (455)
+.++|++
T Consensus 220 ~~~~l~~ 226 (228)
T 2dzn_A 220 VKKFFLN 226 (228)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777765
No 5
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5.2e-38 Score=293.62 Aligned_cols=222 Identities=23% Similarity=0.326 Sum_probs=199.8
Q ss_pred ccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHH
Q 012836 7 RMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASA 86 (455)
Q Consensus 7 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~ 86 (455)
.|.|+||.|+..|+.++++.|++.+.+.... +..|.||||+|+..|+.+++++|++++.+ .+..|..|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence 4789999999999999999999988765433 33599999999999999999999999987 57789999999999999
Q ss_pred cCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHH
Q 012836 87 NGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVD 166 (455)
Q Consensus 87 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~ 166 (455)
.|+.+++++|++.+++. + .+.+|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HTCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999887 3 355699999999999999999999997 88999999999999999999999999999999
Q ss_pred HhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHH
Q 012836 167 WIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246 (455)
Q Consensus 167 ~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L 246 (455)
+|+++ + .|..|+||||+|+..++.+++++|+++|+ +++.+|.+|+||+|+|.. ..+++++|
T Consensus 156 ~g~~~------~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~tpl~~A~~------~~~~~~~l 216 (261)
T 2xai_A 156 SGADV------N-QGKGQDSPLHAVARTASEELACLLMDFGA------DTQAKNAEGKRPVELVPP------ESPLAQLF 216 (261)
T ss_dssp HTCCT------T-CCBTTBCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCGGGGSCT------TCTHHHHH
T ss_pred cCCCC------C-CCCCCCChHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCChhhhccc------cccHHHHH
Confidence 99887 5 38999999999999999999999999999 899999999999999962 34689999
Q ss_pred HHhcccc
Q 012836 247 WSAGAMR 253 (455)
Q Consensus 247 ~~~ga~~ 253 (455)
++.++.+
T Consensus 217 l~~~~~~ 223 (261)
T 2xai_A 217 LEREGPP 223 (261)
T ss_dssp HHC-CCC
T ss_pred HhccCCc
Confidence 9987743
No 6
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=6.3e-38 Score=288.21 Aligned_cols=215 Identities=24% Similarity=0.267 Sum_probs=198.4
Q ss_pred cccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHH
Q 012836 2 TSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPM 81 (455)
Q Consensus 2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 81 (455)
...+..|.|+||.|+..|+.++++.|++.+.+.... +..|.||||+|+..|+.+++++|++.+.+ .+..+..|.|||
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L 81 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCL 81 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCHH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCcc--CCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcHH
Confidence 456788999999999999999999999998765443 23599999999999999999999999887 567789999999
Q ss_pred HHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHH
Q 012836 82 HMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161 (455)
Q Consensus 82 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v 161 (455)
|+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence 9999999999999999998544488899999999999999999999999997 888999999999999999999999999
Q ss_pred HHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhh
Q 012836 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232 (455)
Q Consensus 162 ~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~ 232 (455)
++|+++|+++ +.+|..|+||||+|+..++.+++++|+++|+ +++.+|..|+||||+|..
T Consensus 161 ~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 161 EILLAAKCDL------HAVNIHGDSPLHIAARENRYDCVVLFLSRDS------DVTLKNKEGETPLQCASL 219 (237)
T ss_dssp HHHHTTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC------CTTCCCTTSCCHHHHSCT
T ss_pred HHHHHcCCCC------CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC------CCCccCCCCCCHHHHHHH
Confidence 9999999887 8899999999999999999999999999999 899999999999999964
No 7
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.9e-38 Score=297.84 Aligned_cols=218 Identities=20% Similarity=0.156 Sum_probs=185.5
Q ss_pred CcccCcccCHHHHHHHHcCCHHHHHHHHhcCCccc-CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCc
Q 012836 1 MTSYSTRMDRRLIAAALTGDVQTLQQLFVENPLIL-HTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFS 79 (455)
Q Consensus 1 ~t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t 79 (455)
+...+..|.||||.|+..|+.++++.|++.+.... ....+..|.||||+|+..|+.+++++|++++.+ ++..|..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCC
Confidence 35678999999999999999999999999876521 122234599999999999999999999999988 5777999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCccc----------------------------------------------cccCCCCCCC
Q 012836 80 PMHMASANGQIDVVRGLMKFDQKL----------------------------------------------CHLQGPERKT 113 (455)
Q Consensus 80 pLh~Aa~~g~~~iv~~Ll~~~~~~----------------------------------------------~~~~d~~g~t 113 (455)
|||+|+..|+.+++++|++.+++. .+.+|..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 999999999999999999977541 2567889999
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCccccccccC-CCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHH
Q 012836 114 PLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ-RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT 192 (455)
Q Consensus 114 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~ 192 (455)
|||+|+..|+.+++++|++. +.+++..+.. |+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~------~~~d~~g~tpL~~A~ 233 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP------TARMYGGRTPLGSAL 233 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC------cccccCCCCHHHHHH
Confidence 99999999999999999997 8888888754 999999999999999999999999987 899999999999999
Q ss_pred hcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhh
Q 012836 193 WKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232 (455)
Q Consensus 193 ~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~ 232 (455)
..|+.+++++|+++|+ +++.+|..|.||+++|..
T Consensus 234 ~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 234 LRPNPILARLLRAHGA------PEPEDGGDKLSPCSSSGS 267 (282)
T ss_dssp TSSCHHHHHHHHHTTC------CCCCCC------------
T ss_pred HcCCcHHHHHHHHcCC------CcCcCCCcccccccccCC
Confidence 9999999999999999 899999999999999954
No 8
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.9e-38 Score=295.92 Aligned_cols=224 Identities=24% Similarity=0.333 Sum_probs=202.7
Q ss_pred ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836 3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH 82 (455)
Q Consensus 3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 82 (455)
..+..|.|+||.|+..|+.++++.|++.+.+.... +..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||
T Consensus 54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~ 130 (285)
T 3d9h_A 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLF 130 (285)
T ss_dssp SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEE--CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHH
T ss_pred CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHH
Confidence 46778999999999999999999999988765433 33599999999999999999999999887 5777999999999
Q ss_pred HHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHH
Q 012836 83 MASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR 162 (455)
Q Consensus 83 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~ 162 (455)
+|+..|+.+++++|++.+++. +. +.+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.++++
T Consensus 131 ~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~ 207 (285)
T 3d9h_A 131 NACVSGSWDCVNLLLQHGASV-QP-ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVK 207 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCS-SC-SCTTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHH
T ss_pred HHHHcCHHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 999999999999999999887 33 45699999999999999999999997 8899999999999999999999999999
Q ss_pred HHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhH
Q 012836 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREI 242 (455)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i 242 (455)
+|++.|+++ + .|..|+||||+|+..++.+++++|+++|+ +++.+|.+|+||||+|. .+.++
T Consensus 208 ~Ll~~ga~~------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~t~l~~A~------~~~~~ 268 (285)
T 3d9h_A 208 KLLESGADV------N-QGKGQDSPLHAVVRTASEELACLLMDFGA------DTQAKNAEGKRPVELVP------PESPL 268 (285)
T ss_dssp HHHHTTCCT------T-CCBTTBCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCGGGGSC------TTSHH
T ss_pred HHHHCCCCC------C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHhc------CccHH
Confidence 999999887 5 48999999999999999999999999999 89999999999999996 34689
Q ss_pred HHHHHHh-cc
Q 012836 243 EEIFWSA-GA 251 (455)
Q Consensus 243 ~~~L~~~-ga 251 (455)
+++|+++ |+
T Consensus 269 ~~~Ll~~~~a 278 (285)
T 3d9h_A 269 AQLFLEREGA 278 (285)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHhhcc
Confidence 9999998 55
No 9
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-37 Score=290.31 Aligned_cols=230 Identities=23% Similarity=0.271 Sum_probs=190.6
Q ss_pred CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA 84 (455)
Q Consensus 5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A 84 (455)
+..+.|+||.|+..|+.++++.|++.+.+.... +..|.||||+|+..|+.+++++|++++.+ .+..|..|.||||+|
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 112 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEA 112 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHH
Confidence 456678888888888888888888776654432 23478888888888888888888888776 466677888888888
Q ss_pred HHcCCHHHHHHHHhcCccccccC----------CCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836 85 SANGQIDVVRGLMKFDQKLCHLQ----------GPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK 154 (455)
Q Consensus 85 a~~g~~~iv~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 154 (455)
+..|+.+++++|++.+.+. +.. +..|.||||.|+..|+.+++++|++..+.+++..|..|+||||+|+.
T Consensus 113 ~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~ 191 (285)
T 1wdy_A 113 AVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191 (285)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHH
T ss_pred HHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 8888888888888887776 333 67788888888888888888888887788888888888999999998
Q ss_pred cCC----HHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHh-cCCCCCCCccccccCCCCCCHHHH
Q 012836 155 NNQ----FEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS-HGANASGGLEVNATNHSGLTALDV 229 (455)
Q Consensus 155 ~~~----~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~-~ga~~~~~v~~~~~n~~g~t~l~~ 229 (455)
.++ .+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++ .|+ +++.+|..|+||||+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~------~~~~~~~~g~t~l~~ 259 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV------NVRGERGKTPLILAVEKKHLGLVQRLLEQEHI------EINDTDSDGKTALLL 259 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS------SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC------CTTCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHHHHcCCCC------CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC------CccccCCCCCcHHHH
Confidence 888 88888888888776 8899999999999999999999999999 777 889999999999999
Q ss_pred HhhCCCCcCchhHHHHHHHhccccc
Q 012836 230 LLSFPSEAGDREIEEIFWSAGAMRM 254 (455)
Q Consensus 230 a~~~~~~~~~~~i~~~L~~~ga~~~ 254 (455)
|+.. ++.+++++|+++|+...
T Consensus 260 A~~~----~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 260 AVEL----KLKKIAELLCKRGASTD 280 (285)
T ss_dssp HHHT----TCHHHHHHHHHHSSCSC
T ss_pred HHHc----CcHHHHHHHHHcCCCCC
Confidence 9754 78899999999999653
No 10
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1e-37 Score=305.83 Aligned_cols=234 Identities=18% Similarity=0.191 Sum_probs=208.6
Q ss_pred ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836 3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH 82 (455)
Q Consensus 3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 82 (455)
..+..|.|+||.|+..|+.++++.|++.+.+.... +..|.||||+|+..|+.+++++|++.+.+. .+.+|.||||
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~ 89 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIH 89 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHH
Confidence 45778999999999999999999999998765433 335999999999999999999999999853 2458999999
Q ss_pred HHHHcCCHHHHHHHHhc----Ccccccc-----------------CCCCCCCHHHHHHHhC--CHHHHHHHHHhcCcccc
Q 012836 83 MASANGQIDVVRGLMKF----DQKLCHL-----------------QGPERKTPLHFAAIKG--RVDVVSEMLSAYGECAE 139 (455)
Q Consensus 83 ~Aa~~g~~~iv~~Ll~~----~~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~ 139 (455)
+|+..|+.+++++|++. +.+. +. +|.+|.||||+|+..| +.+++++|++. +.+++
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~ 167 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPT 167 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTT
T ss_pred HHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCc
Confidence 99999999999999998 5554 33 7788999999999999 99999999998 89999
Q ss_pred ccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCcccccc
Q 012836 140 DVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNAT 219 (455)
Q Consensus 140 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~ 219 (455)
..|..|+||||+|+..|+.+++++|+++|++. ....++.+|..|+||||+|+..|+.+++++|+++|+ +++.+
T Consensus 168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------d~~~~ 240 (364)
T 3ljn_A 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSK-SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI------DVNME 240 (364)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS-SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC------CTTCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhccccc-ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC------CCCCC
Confidence 99999999999999999999999999998872 122248999999999999999999999999999999 89999
Q ss_pred CCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836 220 NHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM 254 (455)
Q Consensus 220 n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~ 254 (455)
|..|.||||+|+.. ++.+++++|+++|+...
T Consensus 241 d~~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~~ 271 (364)
T 3ljn_A 241 DNEHTVPLYLSVRA----AMVLLTKELLQKTDVFL 271 (364)
T ss_dssp CTTSCCHHHHHHHT----CCHHHHHHHHHHSCHHH
T ss_pred CCCCCCHHHHHHHh----ChHHHHHHHHHcCCchh
Confidence 99999999999754 88999999999998653
No 11
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=295.38 Aligned_cols=214 Identities=27% Similarity=0.341 Sum_probs=171.4
Q ss_pred ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCC------CCCCCCChHHHHHHHcCCH-HHHHHHHHcCCcchhhhcC
Q 012836 3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHT------PAFASAGNPLHVASAYGHV-DFVKEIIRLKPDFAKEVNQ 75 (455)
Q Consensus 3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~ 75 (455)
..|.++.++|+.||..|+.++|+.|++.+...... ..+..+.||||.|+..++. .+++.|++.+.+ ++..|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-VNVTSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC-TTCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-CCCcCC
Confidence 45667779999999999999999999987653221 1223488999999998876 488999999988 578899
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHc
Q 012836 76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKN 155 (455)
Q Consensus 76 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 155 (455)
+|+||||+|+..|+.+++++|++.+++. +.++.+|.||+|.|+..++.++++.|++. +.+++..|..|+||||+|+..
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHC
Confidence 9999999999999999999999999998 88899999999999999999999999997 899999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL 231 (455)
Q Consensus 156 ~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~ 231 (455)
|+.+++++|+++|+++ |.+|..|+||||+|+..|+.+++++|+++|+ +++.+|.+|+||||+|.
T Consensus 163 g~~~~v~~Ll~~gadv------n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga------d~~~~d~~G~TpL~~A~ 226 (269)
T 4b93_B 163 GHHELVALLLQHGASI------NASNNKGNTALHEAVIEKHVFVVELLLLHGA------SVQVLNKRQRTAVDCAE 226 (269)
T ss_dssp TCGGGHHHHHHTTCCT------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTTSCCSGGGSC
T ss_pred CCHHHHHHHHHCCCCC------CccccCCCcHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHHH
Confidence 9999999999999987 8999999999999999999999999999999 89999999999999995
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.2e-37 Score=289.26 Aligned_cols=244 Identities=22% Similarity=0.271 Sum_probs=188.5
Q ss_pred cCcccCHHHHHHHHcCCHHHHHHHHhcCCcc---------cCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhc
Q 012836 4 YSTRMDRRLIAAALTGDVQTLQQLFVENPLI---------LHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVN 74 (455)
Q Consensus 4 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~---------~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 74 (455)
+...+.|+||.|++.|+.+.+..++..++.. .....+..|.||||+|+..|+.+++++|++.+.+ ++..|
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~ 89 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIIT 89 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEEC
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcC
Confidence 4567899999999999998888877654331 0112234599999999999999999999999887 57789
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836 75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK 154 (455)
Q Consensus 75 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 154 (455)
..|.||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..|+.+++++|++. +.+++.. .+|.||||+|+.
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~g~t~L~~A~~ 166 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPE-SDLASPIHEAAR 166 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCS-CTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHC-CCCCCCC-CCCCCHHHHHHH
Confidence 99999999999999999999999999988 88999999999999999999999999997 6666643 459999999999
Q ss_pred cCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCC
Q 012836 155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP 234 (455)
Q Consensus 155 ~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~ 234 (455)
.|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++.|+ +++. |..|.||||+|+.
T Consensus 167 ~g~~~~v~~Ll~~g~~~------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~-~~~g~t~L~~A~~-- 231 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGNI------DHKISHLGTPLYLACENQQRACVKKLLESGA------DVNQ-GKGQDSPLHAVVR-- 231 (285)
T ss_dssp HTCHHHHHHHHHTTCCT------TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC------CTTC-CBTTBCHHHHHHH--
T ss_pred cCCHHHHHHHHHCCCCC------CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC------CCCC-CCCCCCHHHHHHH--
Confidence 99999999999999887 8999999999999999999999999999998 6664 8899999999975
Q ss_pred CCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836 235 SEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI 277 (455)
Q Consensus 235 ~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (455)
.++.+++++|+++|+.. +.++..|.+|++...
T Consensus 232 --~~~~~~v~~Ll~~gad~---------~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 232 --TASEELACLLMDFGADT---------QAKNAEGKRPVELVP 263 (285)
T ss_dssp --TTCHHHHHHHHHTTCCT---------TCCCTTSCCGGGGSC
T ss_pred --cCCHHHHHHHHHCCCCC---------CCcCCCCCCHHHHhc
Confidence 47889999999999853 456677888877665
No 13
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.9e-37 Score=281.14 Aligned_cols=234 Identities=24% Similarity=0.263 Sum_probs=211.0
Q ss_pred CcccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcH
Q 012836 1 MTSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSP 80 (455)
Q Consensus 1 ~t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 80 (455)
|+..++.+.++|+.|+..|+.+.++.|++.+.+.... +..|.||||+|+..|+.+++++|++.+++.....+..|.||
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~ 79 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence 5677889999999999999999999999988765433 23599999999999999999999999988766667779999
Q ss_pred HHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCC-HH
Q 012836 81 MHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ-FE 159 (455)
Q Consensus 81 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~-~~ 159 (455)
||+|+..|+.+++++|++.+.+. +.++..|.||||.|+..|+.+++++|++. +.+++..+..|.||||+|+..++ .+
T Consensus 80 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred hHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHH
Confidence 99999999999999999999988 77899999999999999999999999997 88899999999999999997766 89
Q ss_pred HHHHHHHHhhhhcccccccccCC-CCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcC
Q 012836 160 VVRALVDWIRDVKKENILNMKDK-QGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG 238 (455)
Q Consensus 160 ~v~~Ll~~g~~~~~~~~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~ 238 (455)
++++|++.|.++ +..+. .|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+++|.. .+
T Consensus 158 ~~~~L~~~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~l~~A~~----~~ 221 (240)
T 3eu9_A 158 PTRLLLTFNVSV------NLGDKYHKNTALHWAVLAGNTTVISLLLEAGA------NVDAQNIKGESALDLAKQ----RK 221 (240)
T ss_dssp THHHHHHTTCCT------TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC------CTTCBCTTSCBHHHHHHH----TT
T ss_pred HHHHHHhcCCCc------chhhccCCCcHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHH----cC
Confidence 999999998887 77776 99999999999999999999999998 899999999999999975 48
Q ss_pred chhHHHHHHHhccccc
Q 012836 239 DREIEEIFWSAGAMRM 254 (455)
Q Consensus 239 ~~~i~~~L~~~ga~~~ 254 (455)
+.+++++|+++++...
T Consensus 222 ~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 222 NVWMINHLQEARQAKG 237 (240)
T ss_dssp CHHHHHHHHHHC----
T ss_pred cHHHHHHHHHhhhccC
Confidence 8999999999998653
No 14
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=9e-37 Score=296.60 Aligned_cols=243 Identities=30% Similarity=0.350 Sum_probs=211.9
Q ss_pred CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA 84 (455)
Q Consensus 5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A 84 (455)
++.+.++||.|++.|+.+.++.++.+.+...... +..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||+|
T Consensus 21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 98 (351)
T 3utm_A 21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred ccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHH
Confidence 3457899999999999999999998754443333 34599999999999999999999999988 577899999999999
Q ss_pred HHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccc-----------------------
Q 012836 85 SANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV----------------------- 141 (455)
Q Consensus 85 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~----------------------- 141 (455)
+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++ +.+++..
T Consensus 99 ~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~ 176 (351)
T 3utm_A 99 CSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYE 176 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence 9999999999999999998 78899999999999999999999999997 6655543
Q ss_pred -------------------------------ccCCCcHHHHHHHc---CCHHHHHHHHHHhhhhcccccccccCCCCCcH
Q 012836 142 -------------------------------SVQRETVLHLAVKN---NQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187 (455)
Q Consensus 142 -------------------------------~~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~ 187 (455)
+..|+||||+|+.. ++.+++++|++.|.++ +.+|.+|+||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~ 250 (351)
T 3utm_A 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV------NEKNKDFMTP 250 (351)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT------TCCCTTCCCH
T ss_pred hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc------CCcCCCCCCH
Confidence 35678999999999 5589999999999887 8999999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCC
Q 012836 188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEP 267 (455)
Q Consensus 188 Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~ 267 (455)
||+|+..|+.+++++|+++|+ +++.+|..|+||||+|+. .++.+++++|+++|+.. +.++.
T Consensus 251 L~~A~~~g~~~~v~~Ll~~ga------~~n~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~---------~~~~~ 311 (351)
T 3utm_A 251 LHVAAERAHNDVMEVLHKHGA------KMNALDSLGQTALHRAAL----AGHLQTCRLLLSYGSDP---------SIISL 311 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCT---------TCCCT
T ss_pred HHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCC---------CCcCC
Confidence 999999999999999999998 899999999999999974 48899999999999954 33455
Q ss_pred CCCCccccc
Q 012836 268 HGQTSVDNC 276 (455)
Q Consensus 268 ~~~~~~~~~ 276 (455)
.|.++.+..
T Consensus 312 ~g~tal~~a 320 (351)
T 3utm_A 312 QGFTAAQMG 320 (351)
T ss_dssp TSCCHHHHS
T ss_pred CCCChhhhh
Confidence 666765443
No 15
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-36 Score=285.17 Aligned_cols=243 Identities=22% Similarity=0.251 Sum_probs=215.1
Q ss_pred cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836 6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS 85 (455)
Q Consensus 6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa 85 (455)
.+|+++||.|++.|+.+.++.|+++++...... +..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence 467899999999999999999999988765442 34589999999999999999999999987 5677899999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccc----------ccCCCcHHHHHHHc
Q 012836 86 ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV----------SVQRETVLHLAVKN 155 (455)
Q Consensus 86 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~----------~~~g~t~Lh~A~~~ 155 (455)
..|+.+++++|++++.++ +.+|..|.||||+|+..|+.+++++|++. +.+++.. +..|.||||+|+..
T Consensus 81 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHh-CCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence 999999999999999988 78899999999999999999999999998 7777665 77899999999999
Q ss_pred CCHHHHHHHHHH-hhhhcccccccccCCCCCcHHHHHHhcCC----hHHHHHHHhcCCCCCCCccccccCCCCCCHHHHH
Q 012836 156 NQFEVVRALVDW-IRDVKKENILNMKDKQGNTALHLATWKRE----CQVVELLLSHGANASGGLEVNATNHSGLTALDVL 230 (455)
Q Consensus 156 ~~~~~v~~Ll~~-g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~----~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a 230 (455)
|+.+++++|++. |.++ +.+|..|+||||+|+..++ .+++++|+++|+ +++.+|..|.||||+|
T Consensus 159 ~~~~~v~~Ll~~~~~~~------~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~------~~~~~~~~g~t~L~~A 226 (285)
T 1wdy_A 159 GHVEVLKILLDEMGADV------NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA------DVNVRGERGKTPLILA 226 (285)
T ss_dssp TCHHHHHHHHHTSCCCT------TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC------CSSCCCTTSCCHHHHH
T ss_pred CCHHHHHHHHHhcCCCC------CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC------CCCCcCCCCCcHHHHH
Confidence 999999999987 7766 8899999999999999999 899999999998 8999999999999999
Q ss_pred hhCCCCcCchhHHHHHHH-hcccccccCCCCCCCCCCCCCCCcccccc
Q 012836 231 LSFPSEAGDREIEEIFWS-AGAMRMRDLTLSPIRSPEPHGQTSVDNCI 277 (455)
Q Consensus 231 ~~~~~~~~~~~i~~~L~~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (455)
+. .++.+++++|++ .|+.. +.++..|.+|+....
T Consensus 227 ~~----~~~~~~v~~Ll~~~g~~~---------~~~~~~g~t~l~~A~ 261 (285)
T 1wdy_A 227 VE----KKHLGLVQRLLEQEHIEI---------NDTDSDGKTALLLAV 261 (285)
T ss_dssp HH----TTCHHHHHHHHHSSSCCT---------TCCCTTSCCHHHHHH
T ss_pred HH----cCCHHHHHHHHhccCCCc---------cccCCCCCcHHHHHH
Confidence 75 478999999998 67643 344556777754443
No 16
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.1e-36 Score=293.37 Aligned_cols=230 Identities=26% Similarity=0.300 Sum_probs=202.1
Q ss_pred ccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc-----------------
Q 012836 7 RMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF----------------- 69 (455)
Q Consensus 7 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~----------------- 69 (455)
+++|+||.||+.|++++|+.||+.+.+++... ...|.||||+|+..|+.++|++|++++++.
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 102 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA 102 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence 47899999999999999999999998765443 235899999999999999999999987643
Q ss_pred ---------------hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCcccc---------ccCCCCCCCHHHHHHHhCCHH
Q 012836 70 ---------------AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC---------HLQGPERKTPLHFAAIKGRVD 125 (455)
Q Consensus 70 ---------------~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~ 125 (455)
.+..|..|.||||+|+..|+.+++++|++.++++. ...+..|.||||+|+..|+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~ 182 (337)
T 4g8k_A 103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 182 (337)
T ss_dssp TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence 34567889999999999999999999999987762 234567899999999999999
Q ss_pred HHHHHHHhcCccccccccCCCcHHHHHHHcCC----HHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836 126 VVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ----FEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201 (455)
Q Consensus 126 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~ 201 (455)
++++|+++.|.+++..|..|+|+||.++..+. .+++++|+++|+++ |.+|.+|+||||+|+..|+.++++
T Consensus 183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~------n~~d~~g~t~L~~a~~~~~~~~v~ 256 (337)
T 4g8k_A 183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV------NVRGERGKTPLILAVEKKHLGLVQ 256 (337)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT------TCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC------CCcCCCCCCHHHHHHHhhhhHHHH
Confidence 99999988899999999999999998887654 46889999999887 899999999999999999999999
Q ss_pred HHHhc-CCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccc
Q 012836 202 LLLSH-GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMR 253 (455)
Q Consensus 202 ~Ll~~-ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~ 253 (455)
+|++. |+ +++.+|.+|+||||+|+.. ++.+++++|+++||..
T Consensus 257 ~Ll~~~~~------~vn~~d~~G~TpL~~A~~~----g~~~iv~~Ll~~GAd~ 299 (337)
T 4g8k_A 257 RLLEQEHI------EINDTDSDGKTALLLAVEL----KLKKIAELLCKRGAST 299 (337)
T ss_dssp HHHTSTTC------CTTCBCTTSCBHHHHHHHT----TCHHHHHHHHTTSCSS
T ss_pred HHHHhcCC------cccCcCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCC
Confidence 99986 55 8999999999999999754 7899999999999854
No 17
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=9.8e-37 Score=277.59 Aligned_cols=217 Identities=18% Similarity=0.238 Sum_probs=197.1
Q ss_pred CCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHh
Q 012836 19 GDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98 (455)
Q Consensus 19 g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~ 98 (455)
|+.++++.|+++++......+ ..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTD-RTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp ---CCEETTEETTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCcccccC-CCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 678889999998887665433 3599999999999999999999999887 57779999999999999999999999999
Q ss_pred cCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhccccccc
Q 012836 99 FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILN 178 (455)
Q Consensus 99 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~ 178 (455)
.++...+.++..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +
T Consensus 80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~ 152 (223)
T 2f8y_A 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK------D 152 (223)
T ss_dssp BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT------T
T ss_pred cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------C
Confidence 99855588899999999999999999999999997 8889999999999999999999999999999999887 8
Q ss_pred ccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836 179 MKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM 254 (455)
Q Consensus 179 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~ 254 (455)
.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+++|.. .++.+++++|+++|+.+.
T Consensus 153 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~~----~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 153 MQNNREETPLFLAAREGSYETAKVLLDHFA------NRDITDHMDRLPRDIAQE----RMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCSSC
T ss_pred CcCCCCcCHHHHHHHcCCHHHHHHHHHcCC------CCccccccCCCHHHHHHH----hcchHHHHHHHHcCCCcc
Confidence 899999999999999999999999999999 789999999999999974 478999999999999654
No 18
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.2e-36 Score=300.95 Aligned_cols=240 Identities=25% Similarity=0.345 Sum_probs=168.3
Q ss_pred cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836 6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS 85 (455)
Q Consensus 6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa 85 (455)
..+.|+||.|+..|+.++++.|++.+...... +..|.||||+|+..|+.+++++|++++.+ .+..+..|.||||+|+
T Consensus 144 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 220 (437)
T 1n11_A 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAA 220 (437)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHH
Confidence 34455555555555555555555554433222 12355666666666666666666666554 3444556666666666
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 012836 86 ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165 (455)
Q Consensus 86 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll 165 (455)
..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++ +.+++..+..|+||||+|+..|+.+++++|+
T Consensus 221 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 298 (437)
T 1n11_A 221 KQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298 (437)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 666666666666666665 56666777777777777777777777776 6667777777788888888888888888888
Q ss_pred HHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHH
Q 012836 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEI 245 (455)
Q Consensus 166 ~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~ 245 (455)
++|.++ +.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+. .++.+++++
T Consensus 299 ~~g~~~------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------d~n~~~~~g~t~L~~A~~----~g~~~iv~~ 362 (437)
T 1n11_A 299 KHGVMV------DATTRMGYTPLHVASHYGNIKLVKFLLQHQA------DVNAKTKLGYSPLHQAAQ----QGHTDIVTL 362 (437)
T ss_dssp HHTCCT------TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH----TTCHHHHHH
T ss_pred hCCccC------CCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC------CCCCCCCCCCCHHHHHHH----CChHHHHHH
Confidence 777765 7888999999999999999999999999988 788899999999999975 478899999
Q ss_pred HHHhcccccccCCCCCCCCCCCCCCCcccc
Q 012836 246 FWSAGAMRMRDLTLSPIRSPEPHGQTSVDN 275 (455)
Q Consensus 246 L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 275 (455)
|+++|+.+. ..+..|.+|++.
T Consensus 363 Ll~~ga~~~---------~~~~~g~t~l~~ 383 (437)
T 1n11_A 363 LLKNGASPN---------EVSSDGTTPLAI 383 (437)
T ss_dssp HHHTTCCSC---------CCCSSSCCHHHH
T ss_pred HHHCcCCCC---------CCCCCCCCHHHH
Confidence 999998542 344556666443
No 19
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=9.4e-37 Score=290.43 Aligned_cols=211 Identities=25% Similarity=0.312 Sum_probs=192.5
Q ss_pred CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA 84 (455)
Q Consensus 5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A 84 (455)
+..+.|+||.||..|+.+.++.|++.+.+.... +..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||+|
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A 113 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAA 113 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence 446789999999999999999999998775443 33599999999999999999999999988 577899999999999
Q ss_pred HHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccc------------------------
Q 012836 85 SANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAED------------------------ 140 (455)
Q Consensus 85 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------------------------ 140 (455)
+..|+.+++++|+++++++ +..|.+|.||||+|+..|+.++++.++...+.+++.
T Consensus 114 ~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 114 ASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192 (299)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence 9999999999999999998 788999999999999999999999998876665443
Q ss_pred --cccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccc
Q 012836 141 --VSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA 218 (455)
Q Consensus 141 --~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~ 218 (455)
.+..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+ +++.
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga------d~~~ 260 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV------NIKDYDGWTPLHAAAHWGKEEACRILVENLC------DMEA 260 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTC
T ss_pred hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC------CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC------CCCC
Confidence 4567999999999999999999999999887 8999999999999999999999999999999 8999
Q ss_pred cCCCCCCHHHHHh
Q 012836 219 TNHSGLTALDVLL 231 (455)
Q Consensus 219 ~n~~g~t~l~~a~ 231 (455)
+|..|+||||+|.
T Consensus 261 ~d~~g~t~l~~A~ 273 (299)
T 1s70_B 261 VNKVGQTAFDVAD 273 (299)
T ss_dssp CCTTSCCTTTSCC
T ss_pred cCCCCCCHHHHHH
Confidence 9999999999994
No 20
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-36 Score=299.65 Aligned_cols=227 Identities=19% Similarity=0.216 Sum_probs=201.1
Q ss_pred cccCHHHHHHHHcCCHHHHHHHH--------hcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCC
Q 012836 6 TRMDRRLIAAALTGDVQTLQQLF--------VENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDG 77 (455)
Q Consensus 6 ~~~~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g 77 (455)
..|.|+||.|+..|+.++++.|+ +.+.+.... +..|.||||+|+..|+.+++++|++++.+ ++..|..|
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g 199 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSE 199 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTC
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCC
Confidence 67899999999999998888876 556554333 33599999999999999999999999988 56779999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcC---ccccccCCCCCCCHHHHHHHhC---CHHHHHHHHHhcCccccc--------ccc
Q 012836 78 FSPMHMASANGQIDVVRGLMKFD---QKLCHLQGPERKTPLHFAAIKG---RVDVVSEMLSAYGECAED--------VSV 143 (455)
Q Consensus 78 ~tpLh~Aa~~g~~~iv~~Ll~~~---~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~--------~~~ 143 (455)
.||||+|+..|+.+++++|++.+ .+. +..|..|.||||+|+..| +.+++++|++. +.+++. .|.
T Consensus 200 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~ 277 (373)
T 2fo1_E 200 RSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKY 277 (373)
T ss_dssp CCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSC
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccc
Confidence 99999999999999999999987 455 778999999999999998 89999999998 776664 567
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHHh-hhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCC
Q 012836 144 QRETVLHLAVKNNQFEVVRALVDWI-RDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS 222 (455)
Q Consensus 144 ~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~ 222 (455)
.|+||||+|+..|+.+++++|++++ .++ +.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|..
T Consensus 278 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga------d~~~~d~~ 345 (373)
T 2fo1_E 278 KGRTALHYAAQVSNMPIVKYLVGEKGSNK------DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA------SVEAVDAT 345 (373)
T ss_dssp CCCCTHHHHHSSCCHHHHHHHHHHSCCCT------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CSSCCCSS
T ss_pred cCCCHHHHHHHhCCHHHHHHHHHhcCCCc------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CccCCCCC
Confidence 8999999999999999999999876 665 8999999999999999999999999999999 89999999
Q ss_pred CCCHHHHHhhCCCCcCchhHHHHHHHhcccc
Q 012836 223 GLTALDVLLSFPSEAGDREIEEIFWSAGAMR 253 (455)
Q Consensus 223 g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~ 253 (455)
|+||||+|+. .++.+++++|+++|+.+
T Consensus 346 g~t~l~~A~~----~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 346 DHTARQLAQA----NNHHNIVDIFDRCRPER 372 (373)
T ss_dssp SCCHHHHHHH----TTCHHHHHHHHTTC---
T ss_pred CCCHHHHHHH----cCCHHHHHHHHhcCccc
Confidence 9999999975 48899999999998753
No 21
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=288.97 Aligned_cols=228 Identities=24% Similarity=0.294 Sum_probs=201.5
Q ss_pred ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836 3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH 82 (455)
Q Consensus 3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 82 (455)
..+..|.||||.|+..|+.++++.|++.+.+.... +..|.||||+|+..|+.+++++|++++.+ .+..|..|.||||
T Consensus 53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~ 129 (351)
T 3utm_A 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLH 129 (351)
T ss_dssp CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHH
Confidence 45778999999999999999999999998765443 33599999999999999999999999987 5777999999999
Q ss_pred HHHHcCCHHHHHHHHhcCccccc-----------------------------------------------------cCCC
Q 012836 83 MASANGQIDVVRGLMKFDQKLCH-----------------------------------------------------LQGP 109 (455)
Q Consensus 83 ~Aa~~g~~~iv~~Ll~~~~~~~~-----------------------------------------------------~~d~ 109 (455)
+|+..|+.+++++|++++++... ..+.
T Consensus 130 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (351)
T 3utm_A 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCC
Confidence 99999999999999999877521 2346
Q ss_pred CCCCHHHHHHHh---CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCc
Q 012836 110 ERKTPLHFAAIK---GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNT 186 (455)
Q Consensus 110 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T 186 (455)
.|.||||+|+.. ++.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ |.+|..|+|
T Consensus 210 ~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------n~~d~~g~t 282 (351)
T 3utm_A 210 SHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM------NALDSLGQT 282 (351)
T ss_dssp TCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCC
T ss_pred CCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CCcCCCCCC
Confidence 678999999999 558999999987 8999999999999999999999999999999999887 899999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836 187 ALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM 254 (455)
Q Consensus 187 ~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~ 254 (455)
|||+|+..|+.+++++|+++|+ +++.+|..|.||+++| ..+++++|.+.+..+.
T Consensus 283 ~L~~A~~~~~~~~v~~Ll~~ga------d~~~~~~~g~tal~~a--------~~~~~~~l~~~~~~~~ 336 (351)
T 3utm_A 283 ALHRAALAGHLQTCRLLLSYGS------DPSIISLQGFTAAQMG--------NEAVQQILSESTPMRT 336 (351)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHS--------CHHHHHHHHHC-----
T ss_pred HHHHHHHcCcHHHHHHHHHcCC------CCCCcCCCCCChhhhh--------hHHHHHHHHhcccccc
Confidence 9999999999999999999999 8999999999999998 4678888888776443
No 22
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-35 Score=298.35 Aligned_cols=229 Identities=24% Similarity=0.335 Sum_probs=204.5
Q ss_pred ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836 3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH 82 (455)
Q Consensus 3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 82 (455)
..++.|.|+||.|+..|+.++++.|++++.+.... +..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||
T Consensus 9 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~ 85 (437)
T 1n11_A 9 GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLH 85 (437)
T ss_dssp ------CCHHHHHHHHTCHHHHHHHHHTTCCSCCS--SSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHH
T ss_pred ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHH
Confidence 45778999999999999999999999988765433 33589999999999999999999999987 5777899999999
Q ss_pred HHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHH
Q 012836 83 MASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR 162 (455)
Q Consensus 83 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~ 162 (455)
+|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.++++.|++. +...+..+..|.||||+|+..|+.++++
T Consensus 86 ~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 86 CAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAE 163 (437)
T ss_dssp HHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999988 88899999999999999999999999998 7778888899999999999999999999
Q ss_pred HHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhH
Q 012836 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREI 242 (455)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i 242 (455)
+|+++|+++ +..|..|.||||+|+..++.+++++|+++|+ +++..+..|.||||+|+. .++.++
T Consensus 164 ~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~----~~~~~~ 227 (437)
T 1n11_A 164 LLLERDAHP------NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG------SPHSPAWNGYTPLHIAAK----QNQVEV 227 (437)
T ss_dssp HHHHTTCCT------TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC------CSCCCCTTCCCHHHHHHH----TTCHHH
T ss_pred HHHhCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC------CCCCcCCCCCCHHHHHHH----cCCHHH
Confidence 999998887 8889999999999999999999999999998 778888999999999975 478899
Q ss_pred HHHHHHhccc
Q 012836 243 EEIFWSAGAM 252 (455)
Q Consensus 243 ~~~L~~~ga~ 252 (455)
+++|++.|+.
T Consensus 228 ~~~Ll~~g~~ 237 (437)
T 1n11_A 228 ARSLLQYGGS 237 (437)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 9999999874
No 23
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.9e-35 Score=278.54 Aligned_cols=214 Identities=24% Similarity=0.255 Sum_probs=181.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCc--chhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHH
Q 012836 40 FASAGNPLHVASAYGHVDFVKEIIRLKPD--FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHF 117 (455)
Q Consensus 40 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~ 117 (455)
+..|.||||+|+..|+.+++++|++.+++ ..+..|..|+||||+|+..|+.+++++|+++++++ +.+|..|.||||+
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~ 84 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHL 84 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence 34699999999999999999999998765 36778899999999999999999999999999998 8889999999999
Q ss_pred HHHhCCHHHHHHHHHhcC----------------------------------------------ccccccccCCCcHHHH
Q 012836 118 AAIKGRVDVVSEMLSAYG----------------------------------------------ECAEDVSVQRETVLHL 151 (455)
Q Consensus 118 A~~~g~~~~v~~Ll~~~~----------------------------------------------~~~~~~~~~g~t~Lh~ 151 (455)
|+..|+.+++++|++... .+++..+..|+||||+
T Consensus 85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 164 (282)
T 1oy3_D 85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164 (282)
T ss_dssp HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHH
Confidence 999999999999998632 2356678899999999
Q ss_pred HHHcCCHHHHHHHHHHhhhhcccccccccCC-CCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHH
Q 012836 152 AVKNNQFEVVRALVDWIRDVKKENILNMKDK-QGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL 230 (455)
Q Consensus 152 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a 230 (455)
|+..|+.+++++|+++|+++ +.++. .|+||||+|+..|+.+++++|+++|+ +++.+|..|+||||+|
T Consensus 165 A~~~g~~~~v~~Ll~~g~~~------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~tpL~~A 232 (282)
T 1oy3_D 165 AVIHKDAEMVRLLRDAGADL------NKPEPTCGRTPLHLAVEAQAASVLELLLKAGA------DPTARMYGGRTPLGSA 232 (282)
T ss_dssp HHHTTCHHHHHHHHHHTCCT------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC------CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC------CCcccccCCCCHHHHH
Confidence 99999999999999999887 77775 49999999999999999999999999 8999999999999999
Q ss_pred hhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccccc
Q 012836 231 LSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCIST 279 (455)
Q Consensus 231 ~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (455)
+. .++.+++++|+++|+.. ..++..|.+|+....+.
T Consensus 233 ~~----~~~~~~v~~Ll~~ga~~---------~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 233 LL----RPNPILARLLRAHGAPE---------PEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp HT----SSCHHHHHHHHHTTCCC---------CCCC-------------
T ss_pred HH----cCCcHHHHHHHHcCCCc---------CcCCCcccccccccCCc
Confidence 74 48899999999999954 34556677776555443
No 24
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.1e-35 Score=281.55 Aligned_cols=222 Identities=18% Similarity=0.209 Sum_probs=197.7
Q ss_pred cccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHH
Q 012836 2 TSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPM 81 (455)
Q Consensus 2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 81 (455)
...+..|.||||.|+..|+.++++.|++.+.+.... .|.||||+|+..|+.+++++|++++.+ ++..|..|+|||
T Consensus 25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~L 99 (285)
T 3kea_A 25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTAL 99 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHH
Confidence 456788999999999999999999999998765443 389999999999999999999999988 577899999999
Q ss_pred HHHHHcCCHHHHHHHHhcCccccccCCCCC-CCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHH
Q 012836 82 HMASANGQIDVVRGLMKFDQKLCHLQGPER-KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEV 160 (455)
Q Consensus 82 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~ 160 (455)
|+|+..|+.+++++|+++++++ +.+|..| .||||+|+..|+.+++++|++. +.+.... ..|+||||+|+..|+.++
T Consensus 100 ~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 100 YYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPSTFDL-AILLSCIHITIKNGHVDM 176 (285)
T ss_dssp HHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCTTCCC-STHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCccccc-cCCccHHHHHHHcChHHH
Confidence 9999999999999999999998 7888889 8999999999999999999998 4433222 289999999999999999
Q ss_pred HHHHHHHhhhhcccccccccCCCCCcH-HHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCc
Q 012836 161 VRALVDWIRDVKKENILNMKDKQGNTA-LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGD 239 (455)
Q Consensus 161 v~~Ll~~g~~~~~~~~~~~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~ 239 (455)
+++|+++|+++ +.+|..|+|| ||+|+..++.+++++|+++|+ +++..|. .+ ...++
T Consensus 177 v~~Ll~~gad~------n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga------d~~~~~~-------~a----~~~~~ 233 (285)
T 3kea_A 177 MILLLDYMTST------NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI------NIYSANL-------EN----VLLDD 233 (285)
T ss_dssp HHHHHHHHHHT------CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB------CSTTTTG-------GG----GTTTC
T ss_pred HHHHHHcCCCC------CcccCCCCChHHHHHHHcCCHHHHHHHHHcCC------CCCCCCh-------hh----hhcCC
Confidence 99999999997 8999999998 999999999999999999999 7777774 22 23578
Q ss_pred hhHHHHHHHhccccc
Q 012836 240 REIEEIFWSAGAMRM 254 (455)
Q Consensus 240 ~~i~~~L~~~ga~~~ 254 (455)
.+++++|+++|+...
T Consensus 234 ~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 234 AEIAKMIIEKHVEYK 248 (285)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999999654
No 25
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.7e-34 Score=263.60 Aligned_cols=210 Identities=26% Similarity=0.307 Sum_probs=188.8
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcC--ccccccCCCCCCCHHHHHHH
Q 012836 43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFD--QKLCHLQGPERKTPLHFAAI 120 (455)
Q Consensus 43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~~ 120 (455)
|+||||.|+..|+.++++.|++.+++.....|..|.||||+|+..|+.+++++|++.+ .+.....+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 7899999999999999999999999877778999999999999999999999999999 55533388999999999999
Q ss_pred hCCHHHHHHHHHhc-CccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHH
Q 012836 121 KGRVDVVSEMLSAY-GECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQV 199 (455)
Q Consensus 121 ~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~i 199 (455)
.|+.+++++|++.. +.+++..+..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~ 155 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV------RIKDKFNQIPLHRAASVGSLKL 155 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS------CCCCTTSCCHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc------cccCCCCCCHHHHHHHcCCHHH
Confidence 99999999999972 2788889999999999999999999999999998887 8999999999999999999999
Q ss_pred HHHHHhcC-CCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHH-HhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836 200 VELLLSHG-ANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFW-SAGAMRMRDLTLSPIRSPEPHGQTSVDNCI 277 (455)
Q Consensus 200 v~~Ll~~g-a~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~-~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (455)
+++|++.| + +++.+|..|+||||+|+.. ++.+++++|+ ++|+.. ..++..|.+|++...
T Consensus 156 v~~Ll~~g~~------~~~~~d~~g~t~L~~A~~~----~~~~~v~~Ll~~~ga~~---------~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 156 IELLCGLGKS------AVNWQDKQGWTPLFHALAE----GHGDAAVLLVEKYGAEY---------DLVDNKGAKAEDVAL 216 (228)
T ss_dssp HHHHHTTTCC------CSCCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHCCCS---------CCBCTTSCBGGGGCS
T ss_pred HHHHHhcCcc------cccCcCCCCCCHHHHHHHc----CCHHHHHHHHHhcCCCC---------CccCCCCCcHHHHHH
Confidence 99999999 6 8899999999999999754 7889999999 889854 345567778866654
No 26
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.4e-35 Score=274.16 Aligned_cols=211 Identities=21% Similarity=0.247 Sum_probs=164.7
Q ss_pred CCCChHHHHHHHcC-------------CHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccC
Q 012836 41 ASAGNPLHVASAYG-------------HVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQ 107 (455)
Q Consensus 41 ~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~ 107 (455)
..|.||||+|+..| +.++++.|++.+++.....|..|+||||+|+..|+.+++++|++.++++ +.+
T Consensus 8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~ 86 (253)
T 1yyh_A 8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQ 86 (253)
T ss_dssp --------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCC
Confidence 35999999999987 8999999999999877777999999999999999999999999999998 888
Q ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcH
Q 012836 108 GPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187 (455)
Q Consensus 108 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~ 187 (455)
|..|.||||+|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||
T Consensus 87 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~d~~g~t~ 160 (253)
T 1yyh_A 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV------NAVDDLGKSA 160 (253)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT------TCBCTTSCBH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC------CCcCCCCCCH
Confidence 9999999999999999999999999866689999999999999999999999999999999887 8999999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCC
Q 012836 188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEP 267 (455)
Q Consensus 188 Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~ 267 (455)
||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+. .++.+++++|+++|+.. +.++.
T Consensus 161 L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~---------~~~d~ 221 (253)
T 1yyh_A 161 LHWAAAVNNVDAAVVLLKNGA------NKDMQNNREETPLFLAAR----EGSYETAKVLLDHFANR---------DITDH 221 (253)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCT---------TCCCT
T ss_pred HHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCc---------ccccc
Confidence 999999999999999999999 889999999999999974 47899999999999854 34456
Q ss_pred CCCCcccccc
Q 012836 268 HGQTSVDNCI 277 (455)
Q Consensus 268 ~~~~~~~~~~ 277 (455)
.|.+|++...
T Consensus 222 ~g~tpl~~A~ 231 (253)
T 1yyh_A 222 MDRLPRDIAQ 231 (253)
T ss_dssp TCCCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 6777765543
No 27
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.1e-34 Score=262.71 Aligned_cols=212 Identities=23% Similarity=0.314 Sum_probs=193.2
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHH
Q 012836 40 FASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAA 119 (455)
Q Consensus 40 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~ 119 (455)
+..|.||||+|+..|+.+++++|++++.+ .+..+..|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAA 85 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHH
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHH
Confidence 44699999999999999999999999987 5777899999999999999999999999999987 788999999999999
Q ss_pred HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHH
Q 012836 120 IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQV 199 (455)
Q Consensus 120 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~i 199 (455)
..|+.+++++|++..+.+++..+..|+||||+|+..++.+++++|+++|+++ +.+|..|+||||+|+..|+.++
T Consensus 86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI------NIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHCCHHH
T ss_pred HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CccCCCCCCHHHHHHHCCCHHH
Confidence 9999999999999866889999999999999999999999999999999887 8899999999999999999999
Q ss_pred HHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccccccc
Q 012836 200 VELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCIS 278 (455)
Q Consensus 200 v~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (455)
+++|+++|+ +++.+|..|.||||+|+. .++.+++++|+++|+.. ..++..|.+|++....
T Consensus 160 ~~~Ll~~g~------~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~---------~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 160 AEILLAAKC------DLHAVNIHGDSPLHIAAR----ENRYDCVVLFLSRDSDV---------TLKNKEGETPLQCASL 219 (237)
T ss_dssp HHHHHTTTC------CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCT---------TCCCTTSCCHHHHSCT
T ss_pred HHHHHHcCC------CCCCcCCCCCCHHHHHHH----hCCHhHHHHHHHcCCCC---------CccCCCCCCHHHHHHH
Confidence 999999998 889999999999999975 47899999999999853 3455677777655443
No 28
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.8e-34 Score=264.30 Aligned_cols=198 Identities=20% Similarity=0.282 Sum_probs=176.7
Q ss_pred ccCHHHHHHHHcCCHHHHHHHHhc-CCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcch----hhhcCCCCcHH
Q 012836 7 RMDRRLIAAALTGDVQTLQQLFVE-NPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFA----KEVNQDGFSPM 81 (455)
Q Consensus 7 ~~~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~g~tpL 81 (455)
.|+|+||.|+..|+.+.++.|+++ +.+.. .. +..|.||||+|+..|+.+++++|++.+++.. ...|..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L 79 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-QR-GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL 79 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cC-CCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence 478999999999999999999998 44433 32 3459999999999999999999999987743 45577899999
Q ss_pred HHHHHcCCHHHHHHHHhcCccccccCCC-------------CCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcH
Q 012836 82 HMASANGQIDVVRGLMKFDQKLCHLQGP-------------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETV 148 (455)
Q Consensus 82 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~ 148 (455)
|+|+..|+.+++++|++++++. +.++. +|.||||+|+..|+.+++++|+++ |.+++..|..|+||
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTV 157 (232)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCH
T ss_pred HHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCH
Confidence 9999999999999999999887 44443 799999999999999999999997 89999999999999
Q ss_pred HHHHHHcCCHHHH----HHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836 149 LHLAVKNNQFEVV----RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208 (455)
Q Consensus 149 Lh~A~~~~~~~~v----~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga 208 (455)
||+|+..++.+++ ++|+++|++.....+.+.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 9999999999988 99999998775555567899999999999999999999999999987
No 29
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6.3e-34 Score=258.96 Aligned_cols=196 Identities=19% Similarity=0.210 Sum_probs=183.3
Q ss_pred cCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHH
Q 012836 4 YSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHM 83 (455)
Q Consensus 4 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 83 (455)
.+..+.|+||.|+..|+.++++.|++.+.+.... +..|.||||+|+..|+.+++++|++.++...+..+..|.||||+
T Consensus 21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 98 (223)
T 2f8y_A 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 98 (223)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHH
T ss_pred cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHH
Confidence 3678999999999999999999999988765433 33599999999999999999999999986678889999999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHH
Q 012836 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163 (455)
Q Consensus 84 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~ 163 (455)
|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++
T Consensus 99 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 176 (223)
T 2f8y_A 99 AARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKV 176 (223)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHHHHHcCCHHHHHH
Confidence 99999999999999999998 88899999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCC
Q 012836 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209 (455)
Q Consensus 164 Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~ 209 (455)
|+++|+++ +.+|..|.||||+|+..++.+++++|+++|+.
T Consensus 177 Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 177 LLDHFANR------DITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp HHHTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred HHHcCCCC------ccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 99999887 88999999999999999999999999999984
No 30
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3.2e-34 Score=262.67 Aligned_cols=202 Identities=21% Similarity=0.242 Sum_probs=177.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCcccc----ccCCCCCCCHHHH
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC----HLQGPERKTPLHF 117 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~----~~~d~~g~tpLh~ 117 (455)
.|+||||.|+..|+.+++++|++.....++..|..|+||||+|+..|+.+++++|++.+++.. ..+|.+|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 389999999999999999999998333367889999999999999999999999999998763 4567789999999
Q ss_pred HHHhCCHHHHHHHHHhcCcccccccc-------------CCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCC
Q 012836 118 AAIKGRVDVVSEMLSAYGECAEDVSV-------------QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQG 184 (455)
Q Consensus 118 A~~~g~~~~v~~Ll~~~~~~~~~~~~-------------~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G 184 (455)
|+..|+.+++++|+++ +.+++..+. .|+||||+|+..|+.+++++|+++|+++ +.+|.+|
T Consensus 82 A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~d~~g 154 (232)
T 2rfa_A 82 AVINQNVNLVRALLAR-GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI------RAQDSLG 154 (232)
T ss_dssp HHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTS
T ss_pred HHHcCCHHHHHHHHhC-CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCC
Confidence 9999999999999998 777777655 7999999999999999999999999887 8999999
Q ss_pred CcHHHHHHhcCChHHH----HHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836 185 NTALHLATWKRECQVV----ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM 254 (455)
Q Consensus 185 ~T~Lh~A~~~~~~~iv----~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~ 254 (455)
+||||+|+..++.+++ ++|+++|++....-..+.+|..|.||||+|+. .++.+++++|+++|+...
T Consensus 155 ~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~----~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 155 NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV----EGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp CCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHH----cCCHHHHHHHHhcCccch
Confidence 9999999999999988 99999998421111126899999999999974 488999999999998654
No 31
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1e-33 Score=274.40 Aligned_cols=226 Identities=18% Similarity=0.186 Sum_probs=192.3
Q ss_pred cccCHHHHHHHHcCCHHHHHHHHhcCCcccCC-------------------------------CCCCCCChHHHHHHHcC
Q 012836 6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHT-------------------------------PAFASAGNPLHVASAYG 54 (455)
Q Consensus 6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-------------------------------~~~~~g~t~Lh~A~~~g 54 (455)
..|.||||.|+..|+.++++.|++.+...... ..+..|.||||+|+..|
T Consensus 57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~ 136 (337)
T 4g8k_A 57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 136 (337)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcC
Confidence 35899999999999999999999987653221 12235899999999999
Q ss_pred CHHHHHHHHHcCCcch---------hhhcCCCCcHHHHHHHcCCHHHHHHHHhc-CccccccCCCCCCCHHHHHHHhCC-
Q 012836 55 HVDFVKEIIRLKPDFA---------KEVNQDGFSPMHMASANGQIDVVRGLMKF-DQKLCHLQGPERKTPLHFAAIKGR- 123 (455)
Q Consensus 55 ~~~~v~~Ll~~~~~~~---------~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~- 123 (455)
+.+++++|++++.+.. ...+..|.||||+|+..|+.+++++|+++ ++++ +.+|..|.||+|.++..++
T Consensus 137 ~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~ 215 (337)
T 4g8k_A 137 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDD 215 (337)
T ss_dssp CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCT
T ss_pred cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCc
Confidence 9999999999987532 23456799999999999999999999965 7776 8899999999999887654
Q ss_pred ---HHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHH-hhhhcccccccccCCCCCcHHHHHHhcCChHH
Q 012836 124 ---VDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW-IRDVKKENILNMKDKQGNTALHLATWKRECQV 199 (455)
Q Consensus 124 ---~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~i 199 (455)
.++++.|+++ |.+++..|.+|+||||+|+..|+.++++.|++. |.++ |.+|.+|+||||+|+..|+.++
T Consensus 216 ~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v------n~~d~~G~TpL~~A~~~g~~~i 288 (337)
T 4g8k_A 216 SDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI------NDTDSDGKTALLLAVELKLKKI 288 (337)
T ss_dssp TTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT------TCBCTTSCBHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc------cCcCCCCCCHHHHHHHcCCHHH
Confidence 3577777776 899999999999999999999999999999974 5555 8999999999999999999999
Q ss_pred HHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836 200 VELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM 254 (455)
Q Consensus 200 v~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~ 254 (455)
+++|+++|+ +++. .+||++|+. .++.+++++|+++||...
T Consensus 289 v~~Ll~~GA------d~n~-----~~~L~~A~~----~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 289 AELLCKRGA------STDC-----GDLVMTARR----NYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp HHHHHTTSC------SSTT-----CCHHHHHHH----TTCHHHHHHHHHTTCCC-
T ss_pred HHHHHHCCC------CCCC-----CCHHHHHHH----cCCHHHHHHHHHCcCCCC
Confidence 999999999 5554 469999975 478999999999999754
No 32
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=266.36 Aligned_cols=206 Identities=23% Similarity=0.328 Sum_probs=185.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK 121 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 121 (455)
+|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence 489999999999999999999999887 5778999999999999999999999999999988 88999999999999999
Q ss_pred CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201 (455)
Q Consensus 122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~ 201 (455)
|+.+++++|++. +.+++. +.+|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.++++
T Consensus 80 ~~~~~v~~Ll~~-g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~ 151 (261)
T 2xai_A 80 GSWDCVNLLLQH-GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI------DHKISHLGTPLYLACENQQRACVK 151 (261)
T ss_dssp TCHHHHHHHHHT-TCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCBTTTBCHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHC-CCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC------CcCCCCCCCHHHHHHHhCCHHHHH
Confidence 999999999997 666664 456999999999999999999999999887 889999999999999999999999
Q ss_pred HHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836 202 LLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI 277 (455)
Q Consensus 202 ~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (455)
+|+++|+ +++. |..|.||||+|+. .++.+++++|+++|++. +.++..|.+|++...
T Consensus 152 ~Ll~~g~------~~~~-~~~g~t~Lh~A~~----~~~~~~v~~Ll~~gad~---------~~~d~~g~tpl~~A~ 207 (261)
T 2xai_A 152 KLLESGA------DVNQ-GKGQDSPLHAVAR----TASEELACLLMDFGADT---------QAKNAEGKRPVELVP 207 (261)
T ss_dssp HHHHHTC------CTTC-CBTTBCHHHHHHH----HTCHHHHHHHHHTTCCT---------TCCCTTSCCGGGGSC
T ss_pred HHHHcCC------CCCC-CCCCCChHHHHHH----cCCHHHHHHHHHcCCCC---------CCcCCCCCChhhhcc
Confidence 9999998 6664 8899999999974 47889999999999853 455677888876665
No 33
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-35 Score=290.51 Aligned_cols=250 Identities=17% Similarity=0.176 Sum_probs=206.5
Q ss_pred ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHH--------HcCCcchhhhc
Q 012836 3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEII--------RLKPDFAKEVN 74 (455)
Q Consensus 3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~~ 74 (455)
..+..+.|+||.|+..|+ ++++.|+..+. +..+...|.||||+|+..|+.+++++|+ +.+.+ ++..|
T Consensus 89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~~---n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d 163 (373)
T 2fo1_E 89 EPEPESPIKLHTEAAGSY-AITEPITRESV---NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMD 163 (373)
T ss_dssp -----CCCHHHHHHHSSS-CCCSCCSTTTT---TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCC
T ss_pred CCCCCCccHHHHHhcCCc-hHHHHhccccc---cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCC
Confidence 346788999999999554 77777765332 2222245999999999999998887776 66776 67789
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcC--ccccccccCCCcHHHHH
Q 012836 75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYG--ECAEDVSVQRETVLHLA 152 (455)
Q Consensus 75 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~t~Lh~A 152 (455)
..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++... .+++..|..|.||||+|
T Consensus 164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A 242 (373)
T 2fo1_E 164 CDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 242 (373)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHH
Confidence 99999999999999999999999999998 7889999999999999999999999998732 67888999999999999
Q ss_pred HHcC---CHHHHHHHHHHhhhhccc--ccccccCCCCCcHHHHHHhcCChHHHHHHHhcC-CCCCCCccccccCCCCCCH
Q 012836 153 VKNN---QFEVVRALVDWIRDVKKE--NILNMKDKQGNTALHLATWKRECQVVELLLSHG-ANASGGLEVNATNHSGLTA 226 (455)
Q Consensus 153 ~~~~---~~~~v~~Ll~~g~~~~~~--~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g-a~~~~~v~~~~~n~~g~t~ 226 (455)
+..+ +.+++++|+++|+++... ...+.+|..|+||||+|+..|+.+++++|++++ + +++.+|..|.||
T Consensus 243 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~------~~n~~d~~g~Tp 316 (373)
T 2fo1_E 243 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS------NKDKQDEDGKTP 316 (373)
T ss_dssp HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC------CTTCCCTTCCCH
T ss_pred HHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC------CccCcCCCCCCH
Confidence 9998 899999999999887321 123457889999999999999999999999886 6 899999999999
Q ss_pred HHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836 227 LDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI 277 (455)
Q Consensus 227 l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (455)
||+|+. .++.+++++|+++|+.. +..+..|.+++....
T Consensus 317 L~~A~~----~g~~~iv~~Ll~~gad~---------~~~d~~g~t~l~~A~ 354 (373)
T 2fo1_E 317 IMLAAQ----EGRIEVVMYLIQQGASV---------EAVDATDHTARQLAQ 354 (373)
T ss_dssp HHHHHH----HTCHHHHHHHHHTTCCS---------SCCCSSSCCHHHHHH
T ss_pred HHHHHH----cCCHHHHHHHHHcCCCc---------cCCCCCCCCHHHHHH
Confidence 999975 48899999999999853 334556777755443
No 34
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=7.2e-34 Score=254.31 Aligned_cols=191 Identities=21% Similarity=0.220 Sum_probs=89.0
Q ss_pred cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHc
Q 012836 8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN 87 (455)
Q Consensus 8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~ 87 (455)
+.|+||.|+..|+.+.++.|+.+++......+ ..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||+|+..
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVD-TEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence 34445555555555555555544432222211 1244555555555555555555544444 233444445555555555
Q ss_pred CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCC-----HHHHH
Q 012836 88 GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ-----FEVVR 162 (455)
Q Consensus 88 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~-----~~~v~ 162 (455)
|+.+++++|++.+....+.+|..|.||||+|+..|+.+++++|++..+.+++..|..|+||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 5555555554332222244444445555555555555555555544324444444445555555554444 44455
Q ss_pred HHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhc
Q 012836 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206 (455)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 206 (455)
+|+++|+++ +.+|..|+||||+|+..|+.+++++|+++
T Consensus 163 ~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 163 LLMENGADQ------SIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHTTCCT------TCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHCCCCC------CccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 555444443 44444555555555555555555554443
No 35
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.4e-33 Score=259.52 Aligned_cols=212 Identities=25% Similarity=0.253 Sum_probs=188.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHH----cCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHH
Q 012836 40 FASAGNPLHVASAYGHVDFVKEIIR----LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPL 115 (455)
Q Consensus 40 ~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL 115 (455)
+..|.||||+|+..|+.+++++|++ .+.+ .+..|..|.||||+|+..|+.+++++|++.+.+. +.+|..|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l 83 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAA 83 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHH
Confidence 3469999999999999999999998 3444 6778999999999999999999999999999988 78899999999
Q ss_pred HHHHHhCCHHHHHHHHHhcC---ccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccC-CCCCcHHHHH
Q 012836 116 HFAAIKGRVDVVSEMLSAYG---ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKD-KQGNTALHLA 191 (455)
Q Consensus 116 h~A~~~g~~~~v~~Ll~~~~---~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d-~~G~T~Lh~A 191 (455)
|+|+..|+.+++++|++... .+++..+..|+||||+|+..|+.+++++|++.|.++ +..| ..|+||||+|
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~~g~t~L~~A 157 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI------DAVDIKSGRSPLIHA 157 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTTCCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc------ccccccCCCcHHHHH
Confidence 99999999999999999843 277888899999999999999999999999999887 7777 8899999999
Q ss_pred HhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCC
Q 012836 192 TWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQT 271 (455)
Q Consensus 192 ~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~ 271 (455)
+..|+.+++++|+++|+ +++.+|..|.||||+|+. .++.+++++|+++|+.. +.++..|.+
T Consensus 158 ~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~---------~~~~~~g~t 218 (241)
T 1k1a_A 158 VENNSLSMVQLLLQHGA------NVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADS---------SLKNCHNDT 218 (241)
T ss_dssp HHTTCHHHHHHHHHTTC------CTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCT---------TCCCTTSCC
T ss_pred HHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCC---------CCcCCCCCC
Confidence 99999999999999998 899999999999999974 47899999999999854 344566777
Q ss_pred ccccccc
Q 012836 272 SVDNCIS 278 (455)
Q Consensus 272 ~~~~~~~ 278 (455)
|++...+
T Consensus 219 pl~~A~~ 225 (241)
T 1k1a_A 219 PLMVARS 225 (241)
T ss_dssp TTTTCSS
T ss_pred HHHHHHh
Confidence 7665543
No 36
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.6e-34 Score=283.04 Aligned_cols=234 Identities=16% Similarity=0.088 Sum_probs=198.9
Q ss_pred cccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc----CCcchhh-----
Q 012836 2 TSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRL----KPDFAKE----- 72 (455)
Q Consensus 2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~~----- 72 (455)
+..+..|.|+||.|+..|+.++++.|++.+..... ..|.||||+|+..|+.+++++|++. +.+ .+.
T Consensus 47 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~ 121 (364)
T 3ljn_A 47 TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL----WHGQKPIHLAVMANKTDLVVALVEGAKERGQM-PESLLNEC 121 (364)
T ss_dssp TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC----BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc----cCCCCHHHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhc
Confidence 35677899999999999999999999999883322 2589999999999999999999998 555 333
Q ss_pred ------------hcCCCCcHHHHHHHcC--CHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcc-
Q 012836 73 ------------VNQDGFSPMHMASANG--QIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGEC- 137 (455)
Q Consensus 73 ------------~~~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~- 137 (455)
.|..|.||||+|+..| +.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++. +.+
T Consensus 122 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~ 199 (364)
T 3ljn_A 122 DEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDT-VPSK 199 (364)
T ss_dssp CCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CSCS
T ss_pred chHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhc-cccc
Confidence 6889999999999999 999999999999998 88999999999999999999999999997 666
Q ss_pred ----ccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCC--
Q 012836 138 ----AEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS-- 211 (455)
Q Consensus 138 ----~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~-- 211 (455)
++..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|+++|+...
T Consensus 200 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~------~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~ 273 (364)
T 3ljn_A 200 SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV------NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ 273 (364)
T ss_dssp SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT------TCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHH
T ss_pred ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhh
Confidence 8899999999999999999999999999999987 8999999999999999999999999999987310
Q ss_pred ----CCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccc
Q 012836 212 ----GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252 (455)
Q Consensus 212 ----~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~ 252 (455)
..-.....+..++||++.|. ..+..+.+..|+..++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~aa----~~~~~~~v~~ll~~~~~ 314 (364)
T 3ljn_A 274 ACPYHNGTTVLPDRVVWLDFVPAA----ADPSKQEVLQLLQEKLD 314 (364)
T ss_dssp TCTTBSSSSBCGGGCCCCTTSCSS----CCHHHHHHHHHHHHHHH
T ss_pred cCcccCcccccccccccccchhhh----hccCHHHHHHHHHHHHH
Confidence 00112235667888888774 44555555555555554
No 37
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=9.2e-34 Score=253.59 Aligned_cols=180 Identities=25% Similarity=0.328 Sum_probs=168.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK 121 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 121 (455)
.+.||||.|+..|+.+.++.|++.++...+..|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 47899999999999999999999988557888999999999999999999999999999998 88999999999999999
Q ss_pred CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHh-hhhcccccccccCCCCCcHHHHHHhcCC----
Q 012836 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWI-RDVKKENILNMKDKQGNTALHLATWKRE---- 196 (455)
Q Consensus 122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~d~~G~T~Lh~A~~~~~---- 196 (455)
|+.+++++|++..+.+++..|..|.||||+|+..|+.+++++|+++| .++ +.+|..|+||||+|+..++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI------DFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT------TCCCTTSCCHHHHHHHSSCCSHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc------CCCCCCCCCHHHHHHHhccchhh
Confidence 99999999998888899999999999999999999999999999988 665 8999999999999999998
Q ss_pred -hHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCC
Q 012836 197 -CQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP 234 (455)
Q Consensus 197 -~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~ 234 (455)
.+++++|+++|++.+ .+|..|.||||+|+...
T Consensus 157 ~~~~v~~Ll~~ga~~~------~~~~~g~t~l~~A~~~~ 189 (201)
T 3hra_A 157 YQDIVKLLMENGADQS------IKDNSGRTAMDYANQKG 189 (201)
T ss_dssp HHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCC------ccCCCCCCHHHHHHHcC
Confidence 999999999999884 57889999999997654
No 38
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.1e-35 Score=273.39 Aligned_cols=217 Identities=18% Similarity=0.154 Sum_probs=187.1
Q ss_pred ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcc--cCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcH
Q 012836 3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLI--LHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSP 80 (455)
Q Consensus 3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 80 (455)
..+..|.|+||.|+..|+.++++.|++.+... .....+..|.||||+|+..|+.+++++|++++.+ ++..|..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence 46789999999999999999999999876542 1122234599999999999999999999999987 57779999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCccc-----cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccccc-CCCcHHHHHHH
Q 012836 81 MHMASANGQIDVVRGLMKFDQKL-----CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV-QRETVLHLAVK 154 (455)
Q Consensus 81 Lh~Aa~~g~~~iv~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~A~~ 154 (455)
||+|+..|+.+++++|++.+++. ....+..|.||||+|+..|+.+++++|++. +.+++..+. .|+||||+|+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHH
Confidence 99999999999999999998642 467888999999999999999999999998 889999987 99999999999
Q ss_pred cCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836 155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL 231 (455)
Q Consensus 155 ~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~ 231 (455)
.|+.+++++|+++|+++ +.+|..|+||||+|+..++.+++++|+++|++. .....+..|.|+.+.+.
T Consensus 161 ~~~~~~v~~Ll~~ga~~------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~----~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 161 LQNPDLVSLLLKCGADV------NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN----LQMLPESEDEESYDTES 227 (236)
T ss_dssp TTCHHHHHHHHTTTCCS------CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG----GSSCCCCCTTTCCCCC-
T ss_pred cCCHHHHHHHHHcCCCC------CcccCCCCCHHHHHHccCchHHHHHHHHcchhh----hhcCCccchHHHHhhhc
Confidence 99999999999999887 899999999999999999999999999999942 34478899999987764
No 39
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.1e-33 Score=258.76 Aligned_cols=209 Identities=23% Similarity=0.270 Sum_probs=191.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK 121 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 121 (455)
.+.||||.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA 83 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHc
Confidence 37899999999999999999999998878888999999999999999999999999999987 78899999999999999
Q ss_pred CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201 (455)
Q Consensus 122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~ 201 (455)
|+.+++++|+++ +.+++..|..|+||||+|+..++.+++++|+++|.++ +.+|..|+||||+|+..|+.++++
T Consensus 84 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 84 GXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP------DAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCcHHHHHHHcCCHHHHH
Confidence 999999999997 8889999999999999999999999999999998887 889999999999999999999999
Q ss_pred HHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836 202 LLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI 277 (455)
Q Consensus 202 ~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (455)
+|+++|+ +++.+|..|.||||+|+.. ++.+++++|+++|+.. ..++..|.+|++...
T Consensus 157 ~Ll~~g~------~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~---------~~~~~~g~t~l~~A~ 213 (231)
T 3aji_A 157 ILLFYKA------STNIQDTEGNTPLHLACDE----ERVEEAKFLVTQGASI---------YIENKEEKTPLQVAK 213 (231)
T ss_dssp HHHHTTC------CSCCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCS---------CCCCTTSCCHHHHSC
T ss_pred HHHhcCC------CccccCCCCCCHHHHHHHC----CCHHHHHHHHHCCCCC---------CCCCCCCCCHHHHHH
Confidence 9999998 8899999999999999754 7899999999999853 344566777755443
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1e-34 Score=266.91 Aligned_cols=200 Identities=25% Similarity=0.304 Sum_probs=179.3
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCc---chhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHH
Q 012836 41 ASAGNPLHVASAYGHVDFVKEIIRLKPD---FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHF 117 (455)
Q Consensus 41 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~ 117 (455)
..|.||||+|+..|+.+++++|++.+.. ..+..|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus 6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 84 (236)
T 1ikn_D 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHL 84 (236)
T ss_dssp -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHH
T ss_pred CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence 4599999999999999999999998753 36778899999999999999999999999999998 8899999999999
Q ss_pred HHHhCCHHHHHHHHHhcC-----ccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCC-CCCcHHHHH
Q 012836 118 AAIKGRVDVVSEMLSAYG-----ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDK-QGNTALHLA 191 (455)
Q Consensus 118 A~~~g~~~~v~~Ll~~~~-----~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~-~G~T~Lh~A 191 (455)
|+..|+.+++++|++... ...+..+..|.||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|
T Consensus 85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV------NAQEPCNGRTALHLA 158 (236)
T ss_dssp HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT------TCCCTTTCCCHHHHH
T ss_pred HHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CCCCCCCCCCHHHHH
Confidence 999999999999999742 225677889999999999999999999999999887 88887 999999999
Q ss_pred HhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccC
Q 012836 192 TWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDL 257 (455)
Q Consensus 192 ~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~ 257 (455)
+..|+.+++++|+++|+ +++.+|..|.||||+|+ ..++.+++++|+++|+.....+
T Consensus 159 ~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~----~~~~~~~~~~Ll~~ga~~~~~~ 214 (236)
T 1ikn_D 159 VDLQNPDLVSLLLKCGA------DVNRVTYQGYSPYQLTW----GRPSTRIQQQLGQLTLENLQML 214 (236)
T ss_dssp HHTTCHHHHHHHHTTTC------CSCCCCTTCCCGGGGCT----TSSCHHHHHHHHTTSCGGGSSC
T ss_pred HHcCCHHHHHHHHHcCC------CCCcccCCCCCHHHHHH----ccCchHHHHHHHHcchhhhhcC
Confidence 99999999999999999 89999999999999995 4588999999999999765433
No 41
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.2e-33 Score=267.06 Aligned_cols=243 Identities=23% Similarity=0.259 Sum_probs=205.7
Q ss_pred HHHHcCCHHHHHHHHhcCCcccCCCC-------CCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHH
Q 012836 14 AAALTGDVQTLQQLFVENPLILHTPA-------FASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASA 86 (455)
Q Consensus 14 ~A~~~g~~~~v~~Ll~~~~~~~~~~~-------~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~ 86 (455)
.++..|..+.++.++........... ...+.||||.||..|+.+++++|++.+.+ ++..|..|.||||+|+.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHH
Confidence 57888899999999987654322111 11377999999999999999999999987 57789999999999999
Q ss_pred cCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHH
Q 012836 87 NGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVD 166 (455)
Q Consensus 87 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~ 166 (455)
.|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..++.++++.++.
T Consensus 83 ~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~ 160 (299)
T 1s70_B 83 DDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160 (299)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence 99999999999999998 88899999999999999999999999998 88999999999999999999999999998876
Q ss_pred Hh-hhhcc--------------------cccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCC
Q 012836 167 WI-RDVKK--------------------ENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLT 225 (455)
Q Consensus 167 ~g-~~~~~--------------------~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t 225 (455)
.. .+... .......+..|.||||+|+..|+.+++++|+++|+ +++.+|..|.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------d~~~~d~~g~t 234 (299)
T 1s70_B 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY------DVNIKDYDGWT 234 (299)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC------CTTCCCTTCCC
T ss_pred hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC------CCCCcCCCCCc
Confidence 42 22110 01123467889999999999999999999999998 89999999999
Q ss_pred HHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccccccc
Q 012836 226 ALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCIS 278 (455)
Q Consensus 226 ~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (455)
|||+|+.. ++.+++++|+++|+.. +.++..|.+|++...+
T Consensus 235 pL~~A~~~----~~~~~v~~Ll~~gad~---------~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 235 PLHAAAHW----GKEEACRILVENLCDM---------EAVNKVGQTAFDVADE 274 (299)
T ss_dssp HHHHHHHT----TCHHHHHHHHHTTCCT---------TCCCTTSCCTTTSCCS
T ss_pred HHHHHHhc----CCHHHHHHHHHcCCCC---------CCcCCCCCCHHHHHHH
Confidence 99999754 7899999999999853 3456778888776644
No 42
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.7e-34 Score=269.23 Aligned_cols=214 Identities=15% Similarity=0.082 Sum_probs=189.4
Q ss_pred HHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHH
Q 012836 15 AALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVR 94 (455)
Q Consensus 15 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~ 94 (455)
++...+.+.+..+|.++. . . ..+..|.||||+|+..|+.+++++|++.+.++ +.. +|+||||+|+..|+.++++
T Consensus 6 ~i~~~~~~~v~~lL~~~~-~-~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSKD-T-F-KADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp TGGGCCHHHHHHHHHSTT-T-T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHH
T ss_pred HHHhcCHHHHHHHHHhCC-C-C-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHH
Confidence 356778888888887652 2 2 22345999999999999999999999998774 433 5999999999999999999
Q ss_pred HHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCC-CcHHHHHHHcCCHHHHHHHHHHhhhhcc
Q 012836 95 GLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR-ETVLHLAVKNNQFEVVRALVDWIRDVKK 173 (455)
Q Consensus 95 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~ 173 (455)
+|+++++++ +.+|..|.||||+|+..|+.+++++|++. +.+++..+..| .||||+|+..|+.+++++|+++|++.
T Consensus 80 ~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~-- 155 (285)
T 3kea_A 80 ILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-- 155 (285)
T ss_dssp HHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT--
T ss_pred HHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc--
Confidence 999999998 78999999999999999999999999998 89999999999 89999999999999999999988654
Q ss_pred cccccccCC-CCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCH-HHHHhhCCCCcCchhHHHHHHHhcc
Q 012836 174 ENILNMKDK-QGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTA-LDVLLSFPSEAGDREIEEIFWSAGA 251 (455)
Q Consensus 174 ~~~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~-l~~a~~~~~~~~~~~i~~~L~~~ga 251 (455)
.|. .|+||||+|+..|+.+++++|+++|+ +++.+|..|.|| ||+|+. .++.+++++|+++|+
T Consensus 156 ------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------d~n~~~~~g~t~~L~~A~~----~~~~~~v~~Ll~~ga 219 (285)
T 3kea_A 156 ------FDLAILLSCIHITIKNGHVDMMILLLDYMT------STNTNNSLLFIPDIKLAID----NKDIEMLQALFKYDI 219 (285)
T ss_dssp ------CCCSTHHHHHHHHHHTTCHHHHHHHHHHHH------HTCTTCCCBCCTTHHHHHH----HTCHHHHHHHTTSCB
T ss_pred ------ccccCCccHHHHHHHcChHHHHHHHHHcCC------CCCcccCCCCChHHHHHHH----cCCHHHHHHHHHcCC
Confidence 233 89999999999999999999999998 899999999998 999974 478999999999999
Q ss_pred ccc
Q 012836 252 MRM 254 (455)
Q Consensus 252 ~~~ 254 (455)
...
T Consensus 220 d~~ 222 (285)
T 3kea_A 220 NIY 222 (285)
T ss_dssp CST
T ss_pred CCC
Confidence 654
No 43
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.8e-34 Score=269.91 Aligned_cols=218 Identities=15% Similarity=0.159 Sum_probs=173.7
Q ss_pred ccCcccCHHHHHHHHcCCHHHHHHHHhc----CCcccCC--CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCcc----
Q 012836 3 SYSTRMDRRLIAAALTGDVQTLQQLFVE----NPLILHT--PAFASAGNPLHVASAY---GHVDFVKEIIRLKPDF---- 69 (455)
Q Consensus 3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~--~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~---- 69 (455)
..+..+.|+||.|+..|+.+.++.|++. +...... ..+..|.||||+|+.. |+.+++++|++.+++.
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 4677899999999999999999999874 3222211 2234699999999987 9999999999987532
Q ss_pred --h----hhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCC--------------CCCCHHHHHHHhCCHHHHHH
Q 012836 70 --A----KEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP--------------ERKTPLHFAAIKGRVDVVSE 129 (455)
Q Consensus 70 --~----~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~~v~~ 129 (455)
. ...|..|.||||+|+..|+.+++++|++.++++ +.++. .|.||||+|+..|+.+++++
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 1 124678999999999999999999999999988 66665 79999999999999999999
Q ss_pred HHHh--cCccccccccCCCcHHHHHHHcCC---------HHHHHHHHHHhhhhcc-cccccccCCCCCcHHHHHHhcCCh
Q 012836 130 MLSA--YGECAEDVSVQRETVLHLAVKNNQ---------FEVVRALVDWIRDVKK-ENILNMKDKQGNTALHLATWKREC 197 (455)
Q Consensus 130 Ll~~--~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~v~~Ll~~g~~~~~-~~~~~~~d~~G~T~Lh~A~~~~~~ 197 (455)
|++. .+.+++..|.+|+||||+|+..|+ .+++++|+++|+++.. ...++.+|..|+||||+|+..|+.
T Consensus 167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~ 246 (273)
T 2pnn_A 167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246 (273)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence 9994 489999999999999999999998 7999999999998721 122346899999999999999999
Q ss_pred HHHHHHHhcCCCCCCCccccccCCCCCCH
Q 012836 198 QVVELLLSHGANASGGLEVNATNHSGLTA 226 (455)
Q Consensus 198 ~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~ 226 (455)
+++++|+++|+. ++......+.+|
T Consensus 247 ~iv~~Ll~~ga~-----dp~~~~~~~~~~ 270 (273)
T 2pnn_A 247 GVLAYILQREIH-----EPECRHAAAHHH 270 (273)
T ss_dssp HHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHCCCC-----Cchhhhhhhhhc
Confidence 999999999984 455555555544
No 44
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2e-33 Score=261.50 Aligned_cols=195 Identities=21% Similarity=0.226 Sum_probs=164.5
Q ss_pred CChHHHHHHHcCCHH----HHHHHHHcCCcchhh----hcCCCCcHHHHHHHc---CCHHHHHHHHhcCccccc------
Q 012836 43 AGNPLHVASAYGHVD----FVKEIIRLKPDFAKE----VNQDGFSPMHMASAN---GQIDVVRGLMKFDQKLCH------ 105 (455)
Q Consensus 43 g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~----~~~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~------ 105 (455)
|+||||.|+..|+.+ ++++|++.+.++ +. .|..|+||||+|+.. |+.+++++|++.+++...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 678888888888886 556666677663 44 678888888888888 888888888888766521
Q ss_pred ----cCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccC-------------CCcHHHHHHHcCCHHHHHHHHH--
Q 012836 106 ----LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ-------------RETVLHLAVKNNQFEVVRALVD-- 166 (455)
Q Consensus 106 ----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~Lh~A~~~~~~~~v~~Ll~-- 166 (455)
.+|..|.||||+|+..|+.+++++|++. +.+++..+.. |+||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 1346788899999988888888888887 7778877765 9999999999999999999999
Q ss_pred -HhhhhcccccccccCCCCCcHHHHHHh--cCChH-------HHHHHHhcCCCCCCCccc-------cccCCCCCCHHHH
Q 012836 167 -WIRDVKKENILNMKDKQGNTALHLATW--KRECQ-------VVELLLSHGANASGGLEV-------NATNHSGLTALDV 229 (455)
Q Consensus 167 -~g~~~~~~~~~~~~d~~G~T~Lh~A~~--~~~~~-------iv~~Ll~~ga~~~~~v~~-------~~~n~~g~t~l~~ 229 (455)
.|+++ |.+|.+|+||||+|+. .++.+ ++++|+++|+ ++ +.+|..|+||||+
T Consensus 160 ~~ga~~------n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga------~~~~~~~~~~~~d~~g~tpL~~ 227 (256)
T 2etb_A 160 HQPASL------EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA------RLCPTVQLEEISNHQGLTPLKL 227 (256)
T ss_dssp SCCCCT------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH------HHSTTCCGGGCCCTTSCCHHHH
T ss_pred ccCCCc------CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC------CcccccccccccCCCCCCHHHH
Confidence 88887 8999999999999998 78888 9999999999 67 8999999999999
Q ss_pred HhhCCCCcCchhHHHHHHHhcccccc
Q 012836 230 LLSFPSEAGDREIEEIFWSAGAMRMR 255 (455)
Q Consensus 230 a~~~~~~~~~~~i~~~L~~~ga~~~~ 255 (455)
|+. .++.+++++|+++|+....
T Consensus 228 A~~----~g~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 228 AAK----EGKIEIFRHILQREFSGAA 249 (256)
T ss_dssp HHH----TTCHHHHHHHHHHHHHHHH
T ss_pred HHH----hCCHHHHHHHHhCCCCCCC
Confidence 975 4889999999999996543
No 45
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.4e-32 Score=238.90 Aligned_cols=155 Identities=34% Similarity=0.454 Sum_probs=139.8
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCH
Q 012836 45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV 124 (455)
Q Consensus 45 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~ 124 (455)
++|+.||+.|+.++|+.|++.+.+ ++.+|.+|+||||+|+..++.+++++|++.++++ +.+|.+|+||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence 578999999999999999999887 5778899999999999999999999999999888 78899999999999999999
Q ss_pred HHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHH
Q 012836 125 DVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL 204 (455)
Q Consensus 125 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll 204 (455)
+++++|+++ |.+++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|+
T Consensus 84 ~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~------~~~d~~G~TpL~~A~~~g~~~iv~~Ll 156 (169)
T 4gpm_A 84 EVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV------NTSDSDGRTPLDLAREHGNEEVVKLLE 156 (169)
T ss_dssp HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999999987 8889999999999999999999999999999998887 889999999999999999999999999
Q ss_pred hcCC
Q 012836 205 SHGA 208 (455)
Q Consensus 205 ~~ga 208 (455)
++|+
T Consensus 157 ~~GA 160 (169)
T 4gpm_A 157 KQGG 160 (169)
T ss_dssp TC--
T ss_pred HCCC
Confidence 9998
No 46
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-33 Score=259.96 Aligned_cols=209 Identities=26% Similarity=0.340 Sum_probs=163.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcc-------hhhhcCCCCcHHHHHHHcCCH-HHHHHHHhcCccccccCCCCCCC
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDF-------AKEVNQDGFSPMHMASANGQI-DVVRGLMKFDQKLCHLQGPERKT 113 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~tpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~d~~g~t 113 (455)
.+.+||+.||..|+.++|++|++.+... .+..+..|.||||.|+..++. .++++|++.|+++ +.+|.+|+|
T Consensus 10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~T 88 (269)
T 4b93_B 10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSS 88 (269)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTSCC
T ss_pred cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCC
Confidence 3679999999999999999999987642 345677899999999988775 5889999999998 889999999
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHh
Q 012836 114 PLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATW 193 (455)
Q Consensus 114 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~ 193 (455)
|||+|+..|+.+++++|++. +.+++..+..|.||+|+|+..++.+++++|++.|+++ |.+|..|+||||+|+.
T Consensus 89 pLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~------n~~d~~g~TpL~~A~~ 161 (269)
T 4b93_B 89 PLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP------NKKDLSGNTPLIYACS 161 (269)
T ss_dssp HHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS------CCCCTTCCCHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHH
Confidence 99999999999999999987 8889999999999999999999999999999999887 8999999999999999
Q ss_pred cCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcc
Q 012836 194 KRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSV 273 (455)
Q Consensus 194 ~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~ 273 (455)
.|+.+++++|+++|+ ++|.+|..|.||||+|+. .++.+++++|+++|++. +.++..|.||+
T Consensus 162 ~g~~~~v~~Ll~~ga------dvn~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~Gad~---------~~~d~~G~TpL 222 (269)
T 4b93_B 162 GGHHELVALLLQHGA------SINASNNKGNTALHEAVI----EKHVFVVELLLLHGASV---------QVLNKRQRTAV 222 (269)
T ss_dssp TTCGGGHHHHHHTTC------CTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCS---------CCCCTTSCCSG
T ss_pred CCCHHHHHHHHHCCC------CCCccccCCCcHHHHHHH----cCCHHHHHHHHHCCCCC---------CCcCCCCCCHH
Confidence 999999999999998 899999999999999975 48899999999999854 34566788887
Q ss_pred cccc
Q 012836 274 DNCI 277 (455)
Q Consensus 274 ~~~~ 277 (455)
....
T Consensus 223 ~~A~ 226 (269)
T 4b93_B 223 DCAE 226 (269)
T ss_dssp GGSC
T ss_pred HHHH
Confidence 6553
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=9.5e-33 Score=256.90 Aligned_cols=200 Identities=21% Similarity=0.238 Sum_probs=171.4
Q ss_pred cCHHHHHHHHcCCHH----HHHHHHhcCCcccCC--CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCcchh-------
Q 012836 8 MDRRLIAAALTGDVQ----TLQQLFVENPLILHT--PAFASAGNPLHVASAY---GHVDFVKEIIRLKPDFAK------- 71 (455)
Q Consensus 8 ~~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~~--~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~------- 71 (455)
|.|+||.|+..|+.+ +++.|++.+.+.... ..+..|.||||+|+.. |+.+++++|++.+++...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 679999999999997 556666677665540 1234599999999999 999999999998765321
Q ss_pred ---hhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCC-------------CCCHHHHHHHhCCHHHHHHHHHh--
Q 012836 72 ---EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPE-------------RKTPLHFAAIKGRVDVVSEMLSA-- 133 (455)
Q Consensus 72 ---~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~~v~~Ll~~-- 133 (455)
..|..|.||||+|+..|+.+++++|++.++++ +.+|.. |.||||+|+..|+.+++++|++.
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 23467999999999999999999999999998 666665 99999999999999999999994
Q ss_pred cCccccccccCCCcHHHHHHH--cCCHH-------HHHHHHHHhhhhccc-ccccccCCCCCcHHHHHHhcCChHHHHHH
Q 012836 134 YGECAEDVSVQRETVLHLAVK--NNQFE-------VVRALVDWIRDVKKE-NILNMKDKQGNTALHLATWKRECQVVELL 203 (455)
Q Consensus 134 ~~~~~~~~~~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~g~~~~~~-~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L 203 (455)
.|.+++..|.+|+||||+|+. .++.+ ++++|+++|+++... .+.+.+|..|+||||+|+..|+.+++++|
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 499999999999999999999 78888 999999999886322 22378999999999999999999999999
Q ss_pred HhcCC
Q 012836 204 LSHGA 208 (455)
Q Consensus 204 l~~ga 208 (455)
+++|+
T Consensus 241 l~~g~ 245 (256)
T 2etb_A 241 LQREF 245 (256)
T ss_dssp HHHHH
T ss_pred HhCCC
Confidence 99987
No 48
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=2.1e-32 Score=255.06 Aligned_cols=202 Identities=15% Similarity=0.134 Sum_probs=172.4
Q ss_pred cccCHHHHHHHHcCCHHHHHHHHh----cCCcccCCCC--CCCCChHHHHHH---HcCCHHHHHHHHHcCCcc-------
Q 012836 6 TRMDRRLIAAALTGDVQTLQQLFV----ENPLILHTPA--FASAGNPLHVAS---AYGHVDFVKEIIRLKPDF------- 69 (455)
Q Consensus 6 ~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~--~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~------- 69 (455)
.-+.++||.|++.|+.+.++.|++ .+........ +..|.||||+|+ ..|+.+++++|++.+.+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 456789999999999997666665 6666544332 245999999999 679999999999986431
Q ss_pred ---hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCC--------------CCCCCHHHHHHHhCCHHHHHHHHH
Q 012836 70 ---AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG--------------PERKTPLHFAAIKGRVDVVSEMLS 132 (455)
Q Consensus 70 ---~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll~ 132 (455)
....|..|+||||+|+..|+.+++++|++.++++ +.++ ..|.||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 2333558999999999999999999999999998 6666 689999999999999999999999
Q ss_pred h--cCccccccccCCCcHHHHHHHcCC---------HHHHHHHHHHhhhhcc-cccccccCCCCCcHHHHHHhcCChHHH
Q 012836 133 A--YGECAEDVSVQRETVLHLAVKNNQ---------FEVVRALVDWIRDVKK-ENILNMKDKQGNTALHLATWKRECQVV 200 (455)
Q Consensus 133 ~--~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~v~~Ll~~g~~~~~-~~~~~~~d~~G~T~Lh~A~~~~~~~iv 200 (455)
. .+.+++..|..|+||||+|+..++ .+++++|+++|+++.. ..+.+.+|.+|+||||+|+..|+.+++
T Consensus 162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v 241 (260)
T 3jxi_A 162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF 241 (260)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHH
Confidence 4 489999999999999999999888 7999999999998732 223467999999999999999999999
Q ss_pred HHHHhcCC
Q 012836 201 ELLLSHGA 208 (455)
Q Consensus 201 ~~Ll~~ga 208 (455)
++|+++|+
T Consensus 242 ~~Ll~~g~ 249 (260)
T 3jxi_A 242 QHIIRREI 249 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhCC
Confidence 99999987
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.98 E-value=2.1e-32 Score=257.13 Aligned_cols=195 Identities=22% Similarity=0.245 Sum_probs=171.8
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHc----CCcch---hhhcCCCCcHHHHHHHc---CCHHHHHHHHhcCcccc------
Q 012836 41 ASAGNPLHVASAYGHVDFVKEIIRL----KPDFA---KEVNQDGFSPMHMASAN---GQIDVVRGLMKFDQKLC------ 104 (455)
Q Consensus 41 ~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~---~~~~~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~------ 104 (455)
..|.||||.|+..|+.++|+.|++. +.++. ...|..|+||||+|+.. |+.+++++|++.+++..
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i 90 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV 90 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence 4599999999999999999999874 33321 13578999999999987 99999999999876531
Q ss_pred c----cCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccccc--------------CCCcHHHHHHHcCCHHHHHHHHH
Q 012836 105 H----LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV--------------QRETVLHLAVKNNQFEVVRALVD 166 (455)
Q Consensus 105 ~----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~Lh~A~~~~~~~~v~~Ll~ 166 (455)
+ .+|..|.||||+|+..|+.+++++|++. +.+++..+. .|+||||+|+..|+.+++++|++
T Consensus 91 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred hcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 2 2567899999999999999999999998 888988886 79999999999999999999999
Q ss_pred ---HhhhhcccccccccCCCCCcHHHHHHhcCC---------hHHHHHHHhcCCCCCCCcccc-------ccCCCCCCHH
Q 012836 167 ---WIRDVKKENILNMKDKQGNTALHLATWKRE---------CQVVELLLSHGANASGGLEVN-------ATNHSGLTAL 227 (455)
Q Consensus 167 ---~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~---------~~iv~~Ll~~ga~~~~~v~~~-------~~n~~g~t~l 227 (455)
.|+++ +.+|.+|+||||+|+..++ .+++++|+++|+ +++ .+|..|.|||
T Consensus 170 ~~~~gad~------~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga------~~n~~~~~~~~~d~~g~TpL 237 (273)
T 2pnn_A 170 NSWQPADI------SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA------KLHPTLKLEEITNRKGLTPL 237 (273)
T ss_dssp CSSCCCCT------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH------HHCTTCCGGGCCCTTSCCHH
T ss_pred cccCCCCc------eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh------hcccccccccccCCCCCCHH
Confidence 88887 8999999999999999988 799999999998 564 5899999999
Q ss_pred HHHhhCCCCcCchhHHHHHHHhccc
Q 012836 228 DVLLSFPSEAGDREIEEIFWSAGAM 252 (455)
Q Consensus 228 ~~a~~~~~~~~~~~i~~~L~~~ga~ 252 (455)
|+|+. .++.+++++|+++||.
T Consensus 238 ~~A~~----~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 238 ALAAS----SGKIGVLAYILQREIH 258 (273)
T ss_dssp HHHHH----TTCHHHHHHHHHHHTC
T ss_pred HHHHH----hChHHHHHHHHHCCCC
Confidence 99975 4889999999999993
No 50
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.98 E-value=2.8e-31 Score=243.58 Aligned_cols=197 Identities=21% Similarity=0.296 Sum_probs=178.6
Q ss_pred cccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHH
Q 012836 2 TSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPM 81 (455)
Q Consensus 2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 81 (455)
+..+..|.|+||.|+..|+.++++.|++.++....... ..|.||||+|+..|+.+++++|++.+.+ .+..+..|.|||
T Consensus 36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l 113 (240)
T 3eu9_A 36 RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG-DLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCI 113 (240)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT-TTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcC-CcCCChhHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHH
Confidence 34567899999999999999999999999887654443 3489999999999999999999999887 567789999999
Q ss_pred HHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCC-HHHHHHHHHhcCcccccccc-CCCcHHHHHHHcCCHH
Q 012836 82 HMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGR-VDVVSEMLSAYGECAEDVSV-QRETVLHLAVKNNQFE 159 (455)
Q Consensus 82 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~ 159 (455)
|+|+..|+.+++++|++.+.++ +.++..|.||||+|+..++ .++++.|++. +.+++..+. .|.||||+|+..|+.+
T Consensus 114 ~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~ 191 (240)
T 3eu9_A 114 HLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTT 191 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHT-TCCTTCCCTTTCCCHHHHHHHHTCHH
T ss_pred HHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhc-CCCcchhhccCCCcHHHHHHHcCCHH
Confidence 9999999999999999999988 8889999999999998777 7888888876 888888886 8999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836 160 VVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208 (455)
Q Consensus 160 ~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga 208 (455)
++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++.++
T Consensus 192 ~v~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 192 VISLLLEAGANV------DAQNIKGESALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHHHTCCT------TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCC------CCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence 999999999887 8999999999999999999999999999987
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.98 E-value=2.1e-31 Score=231.57 Aligned_cols=157 Identities=33% Similarity=0.458 Sum_probs=147.0
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCH
Q 012836 79 SPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF 158 (455)
Q Consensus 79 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~ 158 (455)
++|+.||+.|+.++|+.|++.|+++ +.+|.+|+||||+|+..++.++++.|++. +.+++..|.+|+||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCH
Confidence 4799999999999999999999998 88999999999999999999999999997 899999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcC
Q 012836 159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG 238 (455)
Q Consensus 159 ~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~ 238 (455)
+++++|+++|+++ |.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|.+|+|||++|+. .+
T Consensus 84 ~~v~~Ll~~gadv------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga------d~~~~d~~G~TpL~~A~~----~g 147 (169)
T 4gpm_A 84 EVVKLLISKGADV------NAKDSDGRTPLHHAAENGHKEVVKLLISKGA------DVNTSDSDGRTPLDLARE----HG 147 (169)
T ss_dssp HHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH----TT
T ss_pred HHHHHHHHCcCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CccccCCCCCCHHHHHHH----cC
Confidence 9999999999987 8999999999999999999999999999999 899999999999999975 47
Q ss_pred chhHHHHHHHhcccc
Q 012836 239 DREIEEIFWSAGAMR 253 (455)
Q Consensus 239 ~~~i~~~L~~~ga~~ 253 (455)
+.+++++|+++||.-
T Consensus 148 ~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 148 NEEVVKLLEKQGGWL 162 (169)
T ss_dssp CHHHHHHHHTC----
T ss_pred CHHHHHHHHHCCCCc
Confidence 899999999999953
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=5.5e-32 Score=252.23 Aligned_cols=196 Identities=21% Similarity=0.187 Sum_probs=170.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHH----cCCcchhhh----cCCCCcHHHHHH---HcCCHHHHHHHHhcCccc-------
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIR----LKPDFAKEV----NQDGFSPMHMAS---ANGQIDVVRGLMKFDQKL------- 103 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~----~~~g~tpLh~Aa---~~g~~~iv~~Ll~~~~~~------- 103 (455)
.++|+||.|+..|+.+.++.|++ .+.++ +.. |..|.||||+|+ ..|+.+++++|++.+++.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 47899999999999996555555 77664 333 377999999999 779999999999987542
Q ss_pred ---cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccc--------------cCCCcHHHHHHHcCCHHHHHHHHH
Q 012836 104 ---CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS--------------VQRETVLHLAVKNNQFEVVRALVD 166 (455)
Q Consensus 104 ---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~Lh~A~~~~~~~~v~~Ll~ 166 (455)
....|..|.||||+|+..|+.+++++|++. +.+++..+ ..|+||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 134455899999999999999999999997 88899888 589999999999999999999999
Q ss_pred ---HhhhhcccccccccCCCCCcHHHHHHhcCC---------hHHHHHHHhcCCCCCCCccc-------cccCCCCCCHH
Q 012836 167 ---WIRDVKKENILNMKDKQGNTALHLATWKRE---------CQVVELLLSHGANASGGLEV-------NATNHSGLTAL 227 (455)
Q Consensus 167 ---~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~---------~~iv~~Ll~~ga~~~~~v~~-------~~~n~~g~t~l 227 (455)
.|+++ +.+|..|+||||+|+..++ .+++++|+++|+ ++ +.+|..|.|||
T Consensus 162 ~~~~ga~~------~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga------~~~~~~~~~~~~d~~g~tpL 229 (260)
T 3jxi_A 162 NGHKQADL------RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA------KLFPDTNLEALLNNDGLSPL 229 (260)
T ss_dssp CSSCCCCT------TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH------HHCTTCCGGGCCCTTSCCHH
T ss_pred ccccCCCC------cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc------ccccccchhhcccCCCCCHH
Confidence 88887 8999999999999998887 799999999998 56 78999999999
Q ss_pred HHHhhCCCCcCchhHHHHHHHhcccccc
Q 012836 228 DVLLSFPSEAGDREIEEIFWSAGAMRMR 255 (455)
Q Consensus 228 ~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 255 (455)
|+|+. .++.+++++|+++|+.+..
T Consensus 230 ~~A~~----~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 230 MMAAK----TGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHHHC
T ss_pred HHHHH----cCCHHHHHHHHHhCCCccc
Confidence 99975 4899999999999997653
No 53
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.7e-31 Score=231.68 Aligned_cols=170 Identities=25% Similarity=0.327 Sum_probs=140.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC
Q 012836 43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG 122 (455)
Q Consensus 43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 122 (455)
+.||||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence 4678899999999999999988888767778888899999999999999999999888887 778888889999999999
Q ss_pred CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHH
Q 012836 123 RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL 202 (455)
Q Consensus 123 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~ 202 (455)
+.+++++|+++ +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..++.+++++
T Consensus 81 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~~~~~ 153 (172)
T 3v30_A 81 YTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL------TTEADSGYTPMDLAVALGYRKVQQV 153 (172)
T ss_dssp CHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------cccCCCCCCHHHHHHHhCcHHHHHH
Confidence 99999888877 7888888888899999999999999999999888776 7888889999999999999999999
Q ss_pred HHhcCCCCCCCccccccCCCCCCH
Q 012836 203 LLSHGANASGGLEVNATNHSGLTA 226 (455)
Q Consensus 203 Ll~~ga~~~~~v~~~~~n~~g~t~ 226 (455)
|+++|+ ++...|..|.||
T Consensus 154 L~~~~~------~~~~~~~~~~~p 171 (172)
T 3v30_A 154 IENHIL------KLFQSNLVPADP 171 (172)
T ss_dssp HHHHHH------HHSCC-------
T ss_pred HHHHHH------HHhcccCCCCCC
Confidence 998887 677777777776
No 54
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=1.2e-31 Score=258.82 Aligned_cols=200 Identities=18% Similarity=0.170 Sum_probs=162.4
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCC-
Q 012836 11 RLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQ- 89 (455)
Q Consensus 11 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~- 89 (455)
.+|.|+..+..++++.|++.+.++... .+..|.||||+|+..|+.++|++|++++++ ++.+|..|+||||+|+..|+
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~ 177 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNN 177 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHH
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhccc
Confidence 357778778888888888877766542 234599999999999999999999999988 57889999999999999999
Q ss_pred --HHHHHHHHhcCccccccCCCCCCCHHHHHHH----hCCHHHHHHHHHhc-------------------CccccccccC
Q 012836 90 --IDVVRGLMKFDQKLCHLQGPERKTPLHFAAI----KGRVDVVSEMLSAY-------------------GECAEDVSVQ 144 (455)
Q Consensus 90 --~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~~-------------------~~~~~~~~~~ 144 (455)
.++++.|++.+....+.+|..|+||||+|+. .|+.++++.|++.. +.+++..+..
T Consensus 178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 257 (327)
T 1sw6_A 178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257 (327)
T ss_dssp HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------
T ss_pred ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc
Confidence 7888888887744348899999999999999 89999999999864 7788889999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCC
Q 012836 145 RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGL 224 (455)
Q Consensus 145 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~ 224 (455)
|+||||.|+. +++|+++ + +|.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|..|+
T Consensus 258 g~t~L~~a~~------~~~Ll~~--~------~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga------d~~~~d~~G~ 317 (327)
T 1sw6_A 258 RKDSILENLD------LKWIIAN--M------LNAQDSNGDTCLNIAARLGNISIVDALLDYGA------DPFIANKSGL 317 (327)
T ss_dssp --CHHHHHCS------HHHHHHH--T------TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC------CTTCCCTTSC
T ss_pred CCChhHHHHH------HHHHHHh--C------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCcccCCCCC
Confidence 9999999986 8889886 3 38899999999999999999999999999999 8999999999
Q ss_pred CHHHHHhh
Q 012836 225 TALDVLLS 232 (455)
Q Consensus 225 t~l~~a~~ 232 (455)
||||+|+.
T Consensus 318 TpL~~A~~ 325 (327)
T 1sw6_A 318 RPVDFGAG 325 (327)
T ss_dssp CGGGGTCC
T ss_pred CHHHHHHh
Confidence 99999953
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=3.6e-31 Score=249.24 Aligned_cols=192 Identities=19% Similarity=0.231 Sum_probs=173.8
Q ss_pred cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH--
Q 012836 8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS-- 85 (455)
Q Consensus 8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa-- 85 (455)
..+++|.|+..|+.+.++.+++..........+..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 346678899999999999998876553333444569999999999999999999999998557888999999999999
Q ss_pred ---HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHH
Q 012836 86 ---ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR 162 (455)
Q Consensus 86 ---~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~ 162 (455)
..++.+++++|++.+... ...|..|.||||+|+..|+.+++++|++. |.+++..|.+|+||||+|+..|+.++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 678999999999999776 77888999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHH-HhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcC
Q 012836 163 ALVD-WIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG 207 (455)
Q Consensus 163 ~Ll~-~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g 207 (455)
+|++ .|+++ +.+|.+|+||||+|+..|+.+++++|++++
T Consensus 234 ~Ll~~~gad~------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 234 LLLAVPSCDI------SLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHTSTTCCT------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHhcCCCCC------cCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999 78887 899999999999999999999999999875
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=244.28 Aligned_cols=192 Identities=24% Similarity=0.339 Sum_probs=175.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCc-chhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHH--
Q 012836 43 AGNPLHVASAYGHVDFVKEIIRLKPD-FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAA-- 119 (455)
Q Consensus 43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~-- 119 (455)
..+++|.|+..|+.+.++.+++...+ .++..|.+|+||||+|+..|+.+++++|++.++...+..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 45778999999999999999887543 356779999999999999999999999999998444889999999999999
Q ss_pred ---HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCC
Q 012836 120 ---IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRE 196 (455)
Q Consensus 120 ---~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~ 196 (455)
..++.++++.|++. +...+..+..|+||||+|+..|+.+++++|+++|+++ |.+|.+|+||||+|+..|+
T Consensus 156 ~~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~------n~~d~~G~TpLh~A~~~g~ 228 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV------NVQDDDGSTALMCACEHGH 228 (276)
T ss_dssp CCCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHTC
T ss_pred HhhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC------CCCCCCCCCHHHHHHHCCC
Confidence 77899999999998 7888888999999999999999999999999999987 8999999999999999999
Q ss_pred hHHHHHHHh-cCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcc
Q 012836 197 CQVVELLLS-HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251 (455)
Q Consensus 197 ~~iv~~Ll~-~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga 251 (455)
.+++++|++ .|+ +++.+|..|.||||+|+. .++.+++++|++++.
T Consensus 229 ~~iv~~Ll~~~ga------d~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 229 KEIAGLLLAVPSC------DISLTDRDGSTALMVALD----AGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHHHHHTSTTC------CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCC------CCcCcCCCCCCHHHHHHH----cCCHHHHHHHHhccC
Confidence 999999999 788 899999999999999974 488999999998764
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=6.1e-30 Score=227.26 Aligned_cols=159 Identities=21% Similarity=0.269 Sum_probs=150.5
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHH
Q 012836 40 FASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAA 119 (455)
Q Consensus 40 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~ 119 (455)
+..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+
T Consensus 32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 109 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSI 109 (192)
T ss_dssp CTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence 34599999999999999999999999887 5677899999999999999999999999999988 888999999999999
Q ss_pred HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHH
Q 012836 120 IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQV 199 (455)
Q Consensus 120 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~i 199 (455)
..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++
T Consensus 110 ~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 110 IFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI------SARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp HHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT------TCBCTTSCBHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CCcCCCCCCHHHHHHHhCcHHH
Confidence 99999999999997 8999999999999999999999999999999999887 8999999999999999999999
Q ss_pred HHHHHhcC
Q 012836 200 VELLLSHG 207 (455)
Q Consensus 200 v~~Ll~~g 207 (455)
+++|+++|
T Consensus 183 v~~Ll~~~ 190 (192)
T 2rfm_A 183 IKIFTEVR 190 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99999875
No 58
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.5e-29 Score=219.47 Aligned_cols=158 Identities=25% Similarity=0.342 Sum_probs=140.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK 121 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 121 (455)
.|.||||.|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence 378899999999999999999988866 5777888999999999999999999999988887 77888899999999999
Q ss_pred CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201 (455)
Q Consensus 122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~ 201 (455)
|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.++++
T Consensus 80 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 80 GYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP------TIETDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp TCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHcCcHHHHH
Confidence 999999999987 8888888889999999999999999999999988876 788899999999999999999999
Q ss_pred HHHhcCC
Q 012836 202 LLLSHGA 208 (455)
Q Consensus 202 ~Ll~~ga 208 (455)
+|++++.
T Consensus 153 ~L~~~~~ 159 (167)
T 3v31_A 153 VIESHLL 159 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=9.2e-30 Score=219.48 Aligned_cols=158 Identities=23% Similarity=0.299 Sum_probs=140.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK 121 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 121 (455)
...||||.|+..|+.+++++|++.+.+ .+..|..|+||||+|+. |+.+++++|++.+.++ +.+|..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 367899999999999999999998877 46778889999999988 9999999999998887 77888999999999999
Q ss_pred CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201 (455)
Q Consensus 122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~ 201 (455)
|+.+++++|++. +.+++..|.+|+||||+|+..|+.+++++|+++|++. ++.+|..|+||||+|+..|+.++++
T Consensus 81 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~ 154 (162)
T 1ihb_A 81 GFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN-----VGHRNHKGDTACDLARLYGRNEVVS 154 (162)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC-----TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC-----CCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 999999999987 7888899999999999999999999999999988763 3788999999999999999999999
Q ss_pred HHHhcCC
Q 012836 202 LLLSHGA 208 (455)
Q Consensus 202 ~Ll~~ga 208 (455)
+|+++|+
T Consensus 155 ~Ll~~GA 161 (162)
T 1ihb_A 155 LMQANGA 161 (162)
T ss_dssp HHHHTC-
T ss_pred HHHHhCC
Confidence 9999987
No 60
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=1.4e-30 Score=251.36 Aligned_cols=240 Identities=14% Similarity=0.094 Sum_probs=182.3
Q ss_pred ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCC---------------CCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 012836 3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTP---------------AFASAGNPLHVASAYGHVDFVKEIIRLKP 67 (455)
Q Consensus 3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---------------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 67 (455)
..+..|.++++ |+.++++.|++++.+..... ......+.+|.|+..+..++++.|++.+.
T Consensus 47 ~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~ 121 (327)
T 1sw6_A 47 KALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 121 (327)
T ss_dssp ECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCC
T ss_pred cCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCC
Confidence 34566777766 99999999998864322100 00012234688888888899999999988
Q ss_pred cchhh-hcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCC---HHHHHHHHHhcCcccccccc
Q 012836 68 DFAKE-VNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGR---VDVVSEMLSAYGECAEDVSV 143 (455)
Q Consensus 68 ~~~~~-~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~~~ 143 (455)
++ +. .|..|+||||+||..|+.++|++|+++++++ +.+|.+|+||||+|+..|+ .++++.|++....+++..|.
T Consensus 122 dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~ 199 (327)
T 1sw6_A 122 NL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 199 (327)
T ss_dssp CS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred Cc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC
Confidence 74 55 7999999999999999999999999999998 8899999999999999998 78888999886688999999
Q ss_pred CCCcHHHHHHH----cCCHHHHHHHHHHhhhhcc--------------cccccccCCCCCcHHHHHHhcCChHHHHHHHh
Q 012836 144 QRETVLHLAVK----NNQFEVVRALVDWIRDVKK--------------ENILNMKDKQGNTALHLATWKRECQVVELLLS 205 (455)
Q Consensus 144 ~g~t~Lh~A~~----~~~~~~v~~Ll~~g~~~~~--------------~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 205 (455)
.|+||||+|+. .|+.+++++|++.+..... ...++.+|..|.||||.|+. +++|++
T Consensus 200 ~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~ 273 (327)
T 1sw6_A 200 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIA 273 (327)
T ss_dssp TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHH
T ss_pred CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHH
Confidence 99999999999 8999999999998542210 23358899999999999985 899998
Q ss_pred cCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccccc
Q 012836 206 HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNC 276 (455)
Q Consensus 206 ~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
+ +++.+|..|+||||+|+. .++.+++++|+++|+.. ..++..|.+|+...
T Consensus 274 ~--------~~n~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~Gad~---------~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 274 N--------MLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADP---------FIANKSGLRPVDFG 323 (327)
T ss_dssp H--------TTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCT---------TCCCTTSCCGGGGT
T ss_pred h--------CCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC---------cccCCCCCCHHHHH
Confidence 7 478899999999999975 47899999999999954 34566777776543
No 61
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.5e-29 Score=219.14 Aligned_cols=169 Identities=20% Similarity=0.259 Sum_probs=149.9
Q ss_pred CHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcC
Q 012836 9 DRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANG 88 (455)
Q Consensus 9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g 88 (455)
.++||.|+..|+.+.++.|+++++......+ ..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPD-ERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG 80 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence 4789999999999999999999887554443 3599999999999999999999999987 5777999999999999999
Q ss_pred CHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHh
Q 012836 89 QIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWI 168 (455)
Q Consensus 89 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g 168 (455)
+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|++++
T Consensus 81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 999999999999998 88999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred hhhcccccccccCCCCCcH
Q 012836 169 RDVKKENILNMKDKQGNTA 187 (455)
Q Consensus 169 ~~~~~~~~~~~~d~~G~T~ 187 (455)
++. ..++..|.||
T Consensus 159 ~~~------~~~~~~~~~p 171 (172)
T 3v30_A 159 LKL------FQSNLVPADP 171 (172)
T ss_dssp HHH------SCC-------
T ss_pred HHH------hcccCCCCCC
Confidence 987 6777777776
No 62
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=3.7e-29 Score=217.55 Aligned_cols=157 Identities=27% Similarity=0.409 Sum_probs=146.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK 121 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 121 (455)
.+.|+||.|+..|+.+++++|++++.+ .+..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALF 90 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence 377999999999999999999999887 5777899999999999999999999999999887 78899999999999999
Q ss_pred CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201 (455)
Q Consensus 122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~ 201 (455)
|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.++++
T Consensus 91 ~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~~~ 163 (169)
T 2y1l_E 91 GHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV------NAQDKFGKTAFDISIDNGNEDLAE 163 (169)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHhCCHHHHH
Confidence 999999999997 8889999999999999999999999999999999887 889999999999999999999999
Q ss_pred HHHhcC
Q 012836 202 LLLSHG 207 (455)
Q Consensus 202 ~Ll~~g 207 (455)
+|++.|
T Consensus 164 ~L~~~G 169 (169)
T 2y1l_E 164 ILQKLN 169 (169)
T ss_dssp HHHTC-
T ss_pred HHHHcC
Confidence 999875
No 63
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.6e-29 Score=224.61 Aligned_cols=163 Identities=23% Similarity=0.268 Sum_probs=153.7
Q ss_pred hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHH
Q 012836 70 AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVL 149 (455)
Q Consensus 70 ~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L 149 (455)
.+.+|..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+|||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPL 105 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHH
Confidence 4567889999999999999999999999999887 78899999999999999999999999998 888999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHH
Q 012836 150 HLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229 (455)
Q Consensus 150 h~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~ 229 (455)
|+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~ 173 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANV------NDRNLEGETPLIVASKYGRSEIVKKLLELGA------DISARDLTGLTAEAS 173 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCS------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CTTCBCTTSCBHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHH
Confidence 9999999999999999999887 8999999999999999999999999999998 899999999999999
Q ss_pred HhhCCCCcCchhHHHHHHHhc
Q 012836 230 LLSFPSEAGDREIEEIFWSAG 250 (455)
Q Consensus 230 a~~~~~~~~~~~i~~~L~~~g 250 (455)
|+. .++.+++++|+++|
T Consensus 174 A~~----~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 174 ARI----FGRQEVIKIFTEVR 190 (192)
T ss_dssp HHH----TTCHHHHHHHHHHH
T ss_pred HHH----hCcHHHHHHHHhcc
Confidence 975 47899999999876
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=7.5e-29 Score=215.03 Aligned_cols=162 Identities=25% Similarity=0.349 Sum_probs=152.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHc
Q 012836 76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKN 155 (455)
Q Consensus 76 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 155 (455)
.|.||||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..+..|+||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHc
Confidence 5889999999999999999999999886 88999999999999999999999999998 889999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCC
Q 012836 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPS 235 (455)
Q Consensus 156 ~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~ 235 (455)
|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+.
T Consensus 80 ~~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~l~~A~~--- 144 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDV------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGA------DPTIETDSGYNSMDLAVA--- 144 (167)
T ss_dssp TCHHHHHHHHHHTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH---
T ss_pred CCHHHHHHHHHCCCCC------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHH---
Confidence 9999999999999887 8899999999999999999999999999998 889999999999999974
Q ss_pred CcCchhHHHHHHHhcccccc
Q 012836 236 EAGDREIEEIFWSAGAMRMR 255 (455)
Q Consensus 236 ~~~~~~i~~~L~~~ga~~~~ 255 (455)
.++.+++++|+++++....
T Consensus 145 -~~~~~~~~~L~~~~~~~~~ 163 (167)
T 3v31_A 145 -LGYRSVQQVIESHLLKLLQ 163 (167)
T ss_dssp -HTCHHHHHHHHHHHHHHCS
T ss_pred -cCcHHHHHHHHHHHHHHHH
Confidence 4789999999999886543
No 65
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.5e-29 Score=218.95 Aligned_cols=158 Identities=23% Similarity=0.361 Sum_probs=132.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK 121 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 121 (455)
.+.||||.|+..|+.++++.|++.++......+..|+||||+|+..|+.+++++|++.+.++ +.+|.+|.||||+|+..
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHc
Confidence 47788888888888888888888766556667778888888888888888888888888887 77888888888888888
Q ss_pred CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201 (455)
Q Consensus 122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~ 201 (455)
|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+. ++.++++
T Consensus 86 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~a~~-~~~~i~~ 157 (165)
T 3twr_A 86 GHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP------TKKNRDGNTPLDLVKD-GDTDIQD 157 (165)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCTGGGSCT-TCHHHHH
T ss_pred CcHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------cccCCCCCChhHhHhc-CChHHHH
Confidence 888888888886 7888888888899999999999999999999888876 8888999999999766 8889999
Q ss_pred HHHhcCC
Q 012836 202 LLLSHGA 208 (455)
Q Consensus 202 ~Ll~~ga 208 (455)
+|+++|+
T Consensus 158 ~L~~~gA 164 (165)
T 3twr_A 158 LLRGDAA 164 (165)
T ss_dssp HHHTC--
T ss_pred HHhhccc
Confidence 9988875
No 66
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3.1e-29 Score=220.15 Aligned_cols=168 Identities=22% Similarity=0.221 Sum_probs=151.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK 121 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 121 (455)
.+.++||.|+..|+.+++++|++.++...+..|..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence 36789999999999999999999977767888999999999999999999999999999888 78899999999999999
Q ss_pred CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201 (455)
Q Consensus 122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~ 201 (455)
|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++.++++
T Consensus 83 ~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~tpl~~A~~~~~~~~~~ 155 (179)
T 3f6q_A 83 GHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV------SICNKYGEMPVDKAKAPLRELLRE 155 (179)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS------SBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc------chhccCCCCcHHHHHHHHHHHHHH
Confidence 999999999987 8899999999999999999999999999999999887 889999999999999999999999
Q ss_pred HHHhcCCCCCCCccccccCCCC
Q 012836 202 LLLSHGANASGGLEVNATNHSG 223 (455)
Q Consensus 202 ~Ll~~ga~~~~~v~~~~~n~~g 223 (455)
+|+++|+ +++..+.++
T Consensus 156 ~L~~~g~------~~~~~~~~~ 171 (179)
T 3f6q_A 156 RAEKMGQ------NLNRIPYKD 171 (179)
T ss_dssp HHHHTTC------CCSCBCCCC
T ss_pred HHHHhhc------CcccCCccc
Confidence 9999998 566555443
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.1e-28 Score=212.64 Aligned_cols=161 Identities=21% Similarity=0.303 Sum_probs=143.7
Q ss_pred CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA 84 (455)
Q Consensus 5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A 84 (455)
.+...++||.|+..|+.+.++.|++.+.+.... +..|.||||+|+. |+.+++++|++.+.+ ++..|..|.||||+|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDA 77 (162)
T ss_dssp ---CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred cchHhhHHHHHHHcCCHHHHHHHHhCCCCcccc--CccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHH
Confidence 456789999999999999999999988765433 3359999999999 999999999999887 577799999999999
Q ss_pred HHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHH
Q 012836 85 SANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164 (455)
Q Consensus 85 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L 164 (455)
+..|+.+++++|++.+.++ +.+|.+|.||||+|+..|+.+++++|+++....++..|..|+||||+|+..|+.+++++|
T Consensus 78 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 156 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156 (162)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 9999999999999999988 889999999999999999999999999985545789999999999999999999999999
Q ss_pred HHHhhh
Q 012836 165 VDWIRD 170 (455)
Q Consensus 165 l~~g~~ 170 (455)
+++|++
T Consensus 157 l~~GAd 162 (162)
T 1ihb_A 157 QANGAG 162 (162)
T ss_dssp HHTC--
T ss_pred HHhCCC
Confidence 998864
No 68
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.3e-28 Score=208.90 Aligned_cols=150 Identities=27% Similarity=0.376 Sum_probs=121.5
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCC
Q 012836 44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGR 123 (455)
Q Consensus 44 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~ 123 (455)
.|+||.|+..|+.+++++|++.+++. . .+..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCh
Confidence 57788888888888888888887653 2 4777888888888888888888888887776 6777788888888888888
Q ss_pred HHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHH
Q 012836 124 VDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203 (455)
Q Consensus 124 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L 203 (455)
.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV------HTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 8888888876 7778888888888888888888888888888887776 77888888888888888888888876
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=2e-28 Score=212.96 Aligned_cols=161 Identities=32% Similarity=0.430 Sum_probs=148.0
Q ss_pred hhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHH
Q 012836 72 EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHL 151 (455)
Q Consensus 72 ~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~ 151 (455)
.....+.+|||.|+..|+.+++++|++.+.++ +.+|.+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRL 86 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHH
Confidence 34556789999999999999999999999988 78899999999999999999999999997 88899999999999999
Q ss_pred HHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836 152 AVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL 231 (455)
Q Consensus 152 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~ 231 (455)
|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..++.+++++|+++|+ +++.+|..|.||+|+|+
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~l~~A~ 154 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADV------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGA------DVNAQDKFGKTAFDISI 154 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHH
Confidence 99999999999999999887 8899999999999999999999999999998 88999999999999997
Q ss_pred hCCCCcCchhHHHHHHHhc
Q 012836 232 SFPSEAGDREIEEIFWSAG 250 (455)
Q Consensus 232 ~~~~~~~~~~i~~~L~~~g 250 (455)
. .++.+++++|++.|
T Consensus 155 ~----~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 155 D----NGNEDLAEILQKLN 169 (169)
T ss_dssp H----TTCHHHHHHHHTC-
T ss_pred H----hCCHHHHHHHHHcC
Confidence 5 47899999999876
No 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=8.2e-29 Score=214.32 Aligned_cols=161 Identities=30% Similarity=0.382 Sum_probs=147.2
Q ss_pred hcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHH
Q 012836 73 VNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLA 152 (455)
Q Consensus 73 ~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A 152 (455)
.|.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHH
Confidence 3667899999999999999999999977665577888899999999999999999999998 889999999999999999
Q ss_pred HHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhh
Q 012836 153 VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232 (455)
Q Consensus 153 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~ 232 (455)
+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|.
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~a~- 149 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVV------NVADLWKFTPLHEAAAKGKYEICKLLLQHGA------DPTKKNRDGNTPLDLVK- 149 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCTGGGSC-
T ss_pred HHcCcHHHHHHHHhCCCCC------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCcccCCCCCChhHhHh-
Confidence 9999999999999999887 8899999999999999999999999999998 89999999999999984
Q ss_pred CCCCcCchhHHHHHHHhcc
Q 012836 233 FPSEAGDREIEEIFWSAGA 251 (455)
Q Consensus 233 ~~~~~~~~~i~~~L~~~ga 251 (455)
.++.+++++|++.||
T Consensus 150 ----~~~~~i~~~L~~~gA 164 (165)
T 3twr_A 150 ----DGDTDIQDLLRGDAA 164 (165)
T ss_dssp ----TTCHHHHHHHHTC--
T ss_pred ----cCChHHHHHHhhccc
Confidence 267899999999887
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=1.7e-28 Score=210.22 Aligned_cols=154 Identities=25% Similarity=0.320 Sum_probs=123.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC
Q 012836 43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG 122 (455)
Q Consensus 43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 122 (455)
+.||||.|+..|+.++++.|++..+...+..|..|.||||+ +..|+.+++++|++.++++ +.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 45788888888888888888887433456677788888888 8888888888888888777 777888888888888888
Q ss_pred CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHH
Q 012836 123 RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL 202 (455)
Q Consensus 123 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~ 202 (455)
+.+++++|++. |.+++..|..|+||||+|+..|+.+++++|++. +++ +.+|.+|+||||+|+..|+.+++++
T Consensus 80 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~------~~~~~~g~t~l~~A~~~~~~~~v~~ 151 (156)
T 1bd8_A 80 FLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL------HRRDARGLTPLELALQRGAQDLVDI 151 (156)
T ss_dssp CHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT------TCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC------CCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 88888888876 777888888888888888888888888888876 554 7788888888888888888888888
Q ss_pred HHhc
Q 012836 203 LLSH 206 (455)
Q Consensus 203 Ll~~ 206 (455)
|+++
T Consensus 152 Ll~~ 155 (156)
T 1bd8_A 152 LQGH 155 (156)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8764
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=4e-30 Score=235.13 Aligned_cols=201 Identities=15% Similarity=0.126 Sum_probs=165.2
Q ss_pred HHHHHhcCCcccCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCcc
Q 012836 24 LQQLFVENPLILHTP-AFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQK 102 (455)
Q Consensus 24 v~~Ll~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~ 102 (455)
++.|++++....... ....+.||||.|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 456777766544322 233488999999999999999999999987 577899999999999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccc-cCCCcHHHHH--HHcCCHHHHHHHHHHhhhhcccccccc
Q 012836 103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS-VQRETVLHLA--VKNNQFEVVRALVDWIRDVKKENILNM 179 (455)
Q Consensus 103 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 179 (455)
+ +.+|..|.||||+|+..|+.+++++|++. +.+++..+ .+|+||||+| +..|+.+++++|+++|+++ +.
T Consensus 80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~------~~ 151 (229)
T 2vge_A 80 V-NSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM------GL 151 (229)
T ss_dssp T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT------TT
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc------cc
Confidence 8 88999999999999999999999999987 88888886 6999999999 9999999999999999997 88
Q ss_pred cCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHH
Q 012836 180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEE 244 (455)
Q Consensus 180 ~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~ 244 (455)
+|..|.||+|.++.... .++|++.|++ ++++.+|..|+||||+|+.. ++.++++
T Consensus 152 ~~~~~~~~l~~~~~~~~---~~~ll~~ga~----~~~~~~d~~G~TpL~~A~~~----g~~~~v~ 205 (229)
T 2vge_A 152 MNSGAVYALWDYSAEFG---DELSFREGES----VTVLRRDGPEETDWWWAALH----GQEGYVP 205 (229)
T ss_dssp SGGGEEEESSCBCCSST---TBCCBCTTCE----EEEEESSCTTCSSEEEEEET----TEEEEEE
T ss_pred ccCCchHHHHHHhhccc---cccCcccccc----ccccccCCCcccHHHHHHHc----CCcceee
Confidence 89999999997655543 3577888872 35889999999999999643 5555443
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=5.1e-28 Score=212.39 Aligned_cols=163 Identities=23% Similarity=0.278 Sum_probs=149.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836 75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK 154 (455)
Q Consensus 75 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 154 (455)
.++.+|||.|+..|+.+++++|++.+....+.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence 45789999999999999999999997665688999999999999999999999999998 89999999999999999999
Q ss_pred cCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCC
Q 012836 155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP 234 (455)
Q Consensus 155 ~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~ 234 (455)
.|+.+++++|+++|+++ +.+|..|+||||+|+..++.+++++|+++|+ +++.+|..|.||+++|.
T Consensus 82 ~~~~~~v~~Ll~~g~~~------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~--- 146 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADI------NAVNEHGNVPLHYACFWGQDQVAEDLVANGA------LVSICNKYGEMPVDKAK--- 146 (179)
T ss_dssp TTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CSSBCCTTSCCGGGGSC---
T ss_pred cCCHHHHHHHHHcCCCC------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CcchhccCCCCcHHHHH---
Confidence 99999999999999887 8999999999999999999999999999999 89999999999999995
Q ss_pred CCcCchhHHHHHHHhccccc
Q 012836 235 SEAGDREIEEIFWSAGAMRM 254 (455)
Q Consensus 235 ~~~~~~~i~~~L~~~ga~~~ 254 (455)
..+..+++++|+++|+...
T Consensus 147 -~~~~~~~~~~L~~~g~~~~ 165 (179)
T 3f6q_A 147 -APLRELLRERAEKMGQNLN 165 (179)
T ss_dssp -HHHHHHHHHHHHHTTCCCS
T ss_pred -HHHHHHHHHHHHHhhcCcc
Confidence 4578899999999999654
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.6e-27 Score=203.65 Aligned_cols=151 Identities=21% Similarity=0.355 Sum_probs=140.7
Q ss_pred cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHc
Q 012836 8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN 87 (455)
Q Consensus 8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~ 87 (455)
+.++|+.|+..|+.+.++.|++.++... .+..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence 5689999999999999999999987654 234599999999999999999999999887 577799999999999999
Q ss_pred CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHH
Q 012836 88 GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164 (455)
Q Consensus 88 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L 164 (455)
|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|
T Consensus 78 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999998 88999999999999999999999999998 899999999999999999999999999987
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=2.3e-27 Score=203.15 Aligned_cols=155 Identities=23% Similarity=0.320 Sum_probs=140.0
Q ss_pred ccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHH
Q 012836 7 RMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASA 86 (455)
Q Consensus 7 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~ 86 (455)
++.++||.|+..|+.+.++.|+++.+.... ..+..|.||||+ +..|+.+++++|++.+.+ .+..|..|.||||+|+.
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPD-ALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAAR 77 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCCTT-CCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CcchHHHHHHHhCCHHHHHHHHHhhCcCcc-ccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence 357999999999999999999998322222 233459999999 999999999999999987 57789999999999999
Q ss_pred cCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHH
Q 012836 87 NGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVD 166 (455)
Q Consensus 87 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~ 166 (455)
.|+.+++++|++.++++ +.+|.+|.||||+|+..|+.+++++|++. .+++..|.+|+||||+|+..|+.+++++|++
T Consensus 78 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 78 TGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp TTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred cCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 99999999999999988 88999999999999999999999999987 7889999999999999999999999999986
Q ss_pred H
Q 012836 167 W 167 (455)
Q Consensus 167 ~ 167 (455)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 3
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=2.8e-28 Score=224.46 Aligned_cols=174 Identities=18% Similarity=0.103 Sum_probs=125.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK 121 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 121 (455)
.|.||||.|+..|+.+.++.|++++.+. + .+..|.||||.|+..|+.+++++|++.++++ +.+|.+|.||||+|+..
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCA 80 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCc-c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence 4899999999999999999999998774 3 3567899999999999999999999999987 88899999999999999
Q ss_pred CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCC-cHHHHH--HhcCChH
Q 012836 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN-TALHLA--TWKRECQ 198 (455)
Q Consensus 122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~-T~Lh~A--~~~~~~~ 198 (455)
|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|. ||||+| +..|+.+
T Consensus 81 g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~~~~t~l~~a~~~~~g~~~ 153 (239)
T 1ycs_B 81 GHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV------FAMTYSDMQTAADKCEEMEEGYTQ 153 (239)
T ss_dssp TCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCSSSCCCHHHHCCSSSTTCCC
T ss_pred CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------ceecCCCCcchHHHHHHhhhccHH
Confidence 999999999987 8899999999999999999999999999999999887 88887777 999999 7889999
Q ss_pred HHHHHHhcCCCCCCCcccccc---------CCCCCCHHHHHh
Q 012836 199 VVELLLSHGANASGGLEVNAT---------NHSGLTALDVLL 231 (455)
Q Consensus 199 iv~~Ll~~ga~~~~~v~~~~~---------n~~g~t~l~~a~ 231 (455)
++++|+++|+ +++.. +..+.++++++.
T Consensus 154 ~~~~Ll~~~a------~~~~~~~~~~~al~d~~~~~~~eLa~ 189 (239)
T 1ycs_B 154 CSQFLYGVQE------KMGIMNKGVIYALWDYEPQNDDELPM 189 (239)
T ss_dssp HHHHHHHHHH------HTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred HHHHHHHhhh------cccccccceEEEEeccCCCCCCcccc
Confidence 9999999988 44444 556777777664
No 77
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=7.8e-30 Score=233.23 Aligned_cols=190 Identities=15% Similarity=0.077 Sum_probs=164.1
Q ss_pred ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836 3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH 82 (455)
Q Consensus 3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 82 (455)
..+..+.|+||.|+..|+.++++.|++.+.+.... +..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh 92 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP--NEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLH 92 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHH
Confidence 34567789999999999999999999998765443 34599999999999999999999999987 5778999999999
Q ss_pred HHHHcCCHHHHHHHHhcCccccccCC-CCCCCHHHHH--HHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHH
Q 012836 83 MASANGQIDVVRGLMKFDQKLCHLQG-PERKTPLHFA--AIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFE 159 (455)
Q Consensus 83 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~ 159 (455)
+|+..|+.+++++|++.++++ +.++ .+|.||||+| +..|+.+++++|++. +.+++..|..|.|+++.++..+..
T Consensus 93 ~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~~- 169 (229)
T 2vge_A 93 CAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYSAEFGD- 169 (229)
T ss_dssp HHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH-HHHTTTSGGGEEEESSCBCCSSTT-
T ss_pred HHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHc-CCCcccccCCchHHHHHHhhcccc-
Confidence 999999999999999999998 5554 6999999999 999999999999998 888999999999999976655433
Q ss_pred HHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHH
Q 012836 160 VVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL 204 (455)
Q Consensus 160 ~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll 204 (455)
++|++.|+++ .++.+|.+|+||||+|+..|+.++++.++
T Consensus 170 --~~ll~~ga~~----~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 170 --ELSFREGESV----TVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp --BCCBCTTCEE----EEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred --ccCccccccc----cccccCCCcccHHHHHHHcCCcceeehhh
Confidence 5666766653 24789999999999999999999987543
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=7e-28 Score=221.80 Aligned_cols=218 Identities=16% Similarity=0.143 Sum_probs=149.8
Q ss_pred cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836 6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS 85 (455)
Q Consensus 6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa 85 (455)
..|.|+||.|++.|+.+.++.|++++.+.... ..+.||||.|+..|+.++++.|++.+++ ++..|..|.||||+|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~---~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN---PLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC---chhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence 35899999999999999999999998776543 2489999999999999999999999986 6778999999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCC-cHHHHH--HHcCCHHHHH
Q 012836 86 ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE-TVLHLA--VKNNQFEVVR 162 (455)
Q Consensus 86 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A--~~~~~~~~v~ 162 (455)
..|+.+++++|+++++++ +.+|.+|+||||+|+..|+.+++++|+++ +.+++..+..|. ||||+| +..|+.++++
T Consensus 79 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156 (239)
T ss_dssp HHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence 999999999999999998 88999999999999999999999999998 889999888877 999999 7889999999
Q ss_pred HHHHHhhhhccc---ccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836 163 ALVDWIRDVKKE---NILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL 231 (455)
Q Consensus 163 ~Ll~~g~~~~~~---~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~ 231 (455)
+|+++|++.... ......|..+.++++++...|. +++.|.+.+.+...-......+..|.+|.++..
T Consensus 157 ~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~ 226 (239)
T 1ycs_B 157 FLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 226 (239)
T ss_dssp HHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred HHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence 999999887321 1223348889999999988775 334444433310000112345566777776653
No 79
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=1.9e-28 Score=239.42 Aligned_cols=156 Identities=16% Similarity=0.169 Sum_probs=128.6
Q ss_pred cccCHHHHHHHHcCCHHHHHHHHhcCCcccCC-CCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc--hhhhcCCCCcHHH
Q 012836 6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHT-PAFASAGNPLHVASAYGHVDFVKEIIRLKPDF--AKEVNQDGFSPMH 82 (455)
Q Consensus 6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh 82 (455)
..++|+||.|++.|+.++++.|++++...... ..+..|.||||+|+..|+.++|++|++++++. .+..+.+ .||||
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh 168 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR 168 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence 34569999999999999999999987622111 11223789999999999999999999999642 1111222 89999
Q ss_pred HHHHcCCHHHHHHHHhcCcccccc--CCCCCCCHHHHHH-HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHH
Q 012836 83 MASANGQIDVVRGLMKFDQKLCHL--QGPERKTPLHFAA-IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFE 159 (455)
Q Consensus 83 ~Aa~~g~~~iv~~Ll~~~~~~~~~--~d~~g~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~ 159 (455)
+||..|+.++|++|++++++. .. .|.+|.||||+|+ ..|+.+++++|++. |. .|.||||+|+.+|+.+
T Consensus 169 ~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g~~e 239 (376)
T 2aja_A 169 LAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PV-------MLAYAEIHEFEYGEKY 239 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HH-------HHHHHHHCTTTTTTTT
T ss_pred HHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-CC-------ccchHHHHHHHCCCHH
Confidence 999999999999999999987 44 6778999999999 99999999999985 42 3889999999999999
Q ss_pred HHHHHHHHhhhh
Q 012836 160 VVRALVDWIRDV 171 (455)
Q Consensus 160 ~v~~Ll~~g~~~ 171 (455)
++++|+++|++.
T Consensus 240 vv~lL~~~ga~~ 251 (376)
T 2aja_A 240 VNPFIARHVNRL 251 (376)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhcCccc
Confidence 999999998875
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=2.3e-26 Score=197.15 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=111.4
Q ss_pred hhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCc-HH
Q 012836 71 KEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRET-VL 149 (455)
Q Consensus 71 ~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L 149 (455)
...+..|.||||+|+..|+.+++++|++++.++ +.+|..|.||||+|+ .|+.+++++|++. +.+++..|..|+| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHH
Confidence 345677889999999999999999999888887 778888999999885 8899999999887 8888888999998 99
Q ss_pred HHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHH
Q 012836 150 HLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229 (455)
Q Consensus 150 h~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~ 229 (455)
|+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||.+-
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRAGARL------DVRDAWGRLPVDLAEELGHRDVARYLRAAAG------GTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCS------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------------
T ss_pred HHHHHCCCHHHHHHHHHcCCCC------cccCCCCCCHHHHHHHhCHHHHHHHHHHcCC------CCCccCcCcCccccc
Confidence 9999999999999999988887 8889999999999999999999999999998 788999999998764
Q ss_pred H
Q 012836 230 L 230 (455)
Q Consensus 230 a 230 (455)
+
T Consensus 151 ~ 151 (156)
T 1bi7_B 151 P 151 (156)
T ss_dssp -
T ss_pred C
Confidence 4
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=1.1e-26 Score=205.10 Aligned_cols=156 Identities=12% Similarity=0.018 Sum_probs=116.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCH----HHHHHHHhcCccccccCCCCCCCHHHHH
Q 012836 43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQI----DVVRGLMKFDQKLCHLQGPERKTPLHFA 118 (455)
Q Consensus 43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpLh~A 118 (455)
+.++|+.|+..|+.+.++.+++.+.+. ..+..|+||||+|+.+|+. +++++|+++|+++ +.+|.+|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 456677888888887777777766542 2235678888888877764 4788888888777 77777888888888
Q ss_pred HHhCC------HHHHHHHHHhcCccccccccCCC-cHHHHHHHcC-----CHHHHHHHHH-HhhhhcccccccccCCCCC
Q 012836 119 AIKGR------VDVVSEMLSAYGECAEDVSVQRE-TVLHLAVKNN-----QFEVVRALVD-WIRDVKKENILNMKDKQGN 185 (455)
Q Consensus 119 ~~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~~-----~~~~v~~Ll~-~g~~~~~~~~~~~~d~~G~ 185 (455)
+..|+ .++++.|+++ |++++.+|..|+ ||||+|+..+ ..+++++|++ +|+++ +.+|..|+
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~------~~~d~~G~ 155 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL------LIKDKWGL 155 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT------TCCCTTSC
T ss_pred HHcCCcchhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC------cccCCCCC
Confidence 87776 5677777776 778888888888 8888888744 3457788887 77776 78888888
Q ss_pred cHHHHHHhcCChHHHHHHHhcCC
Q 012836 186 TALHLATWKRECQVVELLLSHGA 208 (455)
Q Consensus 186 T~Lh~A~~~~~~~iv~~Ll~~ga 208 (455)
||||+|+..++.+++++|.+...
T Consensus 156 TpL~~A~~~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 156 TALEFVKRCQKPIALKMMEDYIK 178 (186)
T ss_dssp CHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888888876644
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=8.3e-26 Score=188.97 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=101.4
Q ss_pred hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccC-CCcH
Q 012836 70 AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ-RETV 148 (455)
Q Consensus 70 ~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~ 148 (455)
.+..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+. |+.+++++|++. +.+++..|.. |+||
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTRP 81 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBCH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCCH
Confidence 4556777778888888888888888888777776 6677778888888888 888888877776 6777777777 7888
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836 149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208 (455)
Q Consensus 149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga 208 (455)
||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..++.+++++|+++|+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGARL------DVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCCC------CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 88888888888888888777765 7777888888888888888888888887776
No 83
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=3.3e-27 Score=230.69 Aligned_cols=176 Identities=15% Similarity=0.124 Sum_probs=144.0
Q ss_pred HHHHHHHH-cCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc--hhhhcCCCCcHHHHHHH
Q 012836 10 RRLIAAAL-TGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF--AKEVNQDGFSPMHMASA 86 (455)
Q Consensus 10 t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh~Aa~ 86 (455)
+.++.|.. .++.+.++.+++.+. .+.||||.|+..|+.++|++|++.+... ....+..|.||||+||.
T Consensus 67 l~~~~a~~~~~~~~~~~~l~~~g~---------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~ 137 (376)
T 2aja_A 67 LCLYYAHYNRNAKQLWSDAHKKGI---------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 137 (376)
T ss_dssp HHHHHHHTTTTCTTHHHHHHHHTC---------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCC---------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence 35666665 477788888887653 2569999999999999999999998621 12345568899999999
Q ss_pred cCCHHHHHHHHhcCccc--cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccc--cccCCCcHHHHHH-HcCCHHHH
Q 012836 87 NGQIDVVRGLMKFDQKL--CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAED--VSVQRETVLHLAV-KNNQFEVV 161 (455)
Q Consensus 87 ~g~~~iv~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~g~t~Lh~A~-~~~~~~~v 161 (455)
.|+.++|++|++++++. .+..+.+ .||||+|+..|+.+++++|+++ +.+++. .|..|+||||+|+ .+|+.+++
T Consensus 138 ~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv 215 (376)
T 2aja_A 138 NGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVI 215 (376)
T ss_dssp TTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred cCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence 99999999999999642 1223333 8999999999999999999998 777776 8889999999999 99999999
Q ss_pred HHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCC
Q 012836 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209 (455)
Q Consensus 162 ~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~ 209 (455)
++|++.|++ |+||||+|+..|+.+++++|+++|++
T Consensus 216 ~~Ll~~ga~-------------~~taL~~Aa~~g~~evv~lL~~~ga~ 250 (376)
T 2aja_A 216 NFLLDCPVM-------------LAYAEIHEFEYGEKYVNPFIARHVNR 250 (376)
T ss_dssp HHHTTSHHH-------------HHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred HHHHhCCCc-------------cchHHHHHHHCCCHHHHHHHHhcCcc
Confidence 999986532 68999999999999999999998763
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=5.8e-26 Score=200.42 Aligned_cols=159 Identities=13% Similarity=0.040 Sum_probs=140.2
Q ss_pred cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCH----HHHHHHHHcCCcchhhhcCCCCcHHHH
Q 012836 8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHV----DFVKEIIRLKPDFAKEVNQDGFSPMHM 83 (455)
Q Consensus 8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 83 (455)
+.++|+.|++.|+.+.++.++..+..... +..|.||||+|+..|+. +++++|+++|++ ++.+|..|+||||+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~---~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~ 81 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKE---SVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFP 81 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCHH---HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccccc---ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHH
Confidence 45679999999999999999998754322 12499999999999985 599999999988 67789999999999
Q ss_pred HHHcCC------HHHHHHHHhcCccccccCCCCCC-CHHHHHHHhC-----CHHHHHHHHHhcCccccccccCCCcHHHH
Q 012836 84 ASANGQ------IDVVRGLMKFDQKLCHLQGPERK-TPLHFAAIKG-----RVDVVSEMLSAYGECAEDVSVQRETVLHL 151 (455)
Q Consensus 84 Aa~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~ 151 (455)
|+..|+ .+++++|+++|+++ +.+|..|. ||||+|+..+ +.++++.|++..|.+++..|..|+||||+
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~ 160 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHH
Confidence 999987 68899999999998 88999999 9999999944 46799999984599999999999999999
Q ss_pred HHHcCCHHHHHHHHHHhhhh
Q 012836 152 AVKNNQFEVVRALVDWIRDV 171 (455)
Q Consensus 152 A~~~~~~~~v~~Ll~~g~~~ 171 (455)
|++.|+.+++++|.++..+.
T Consensus 161 A~~~~~~~~v~~L~~~~~~~ 180 (186)
T 3t8k_A 161 VKRCQKPIALKMMEDYIKKY 180 (186)
T ss_dssp HHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987665
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=1.7e-25 Score=191.68 Aligned_cols=141 Identities=20% Similarity=0.190 Sum_probs=116.9
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCC-HHHHHH
Q 012836 41 ASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKT-PLHFAA 119 (455)
Q Consensus 41 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-pLh~A~ 119 (455)
..|.||||+|+..|+.+++++|++++.+ .+..|..|+||||+|+ .|+.+++++|++.++++ +.+|..|.| |||+|+
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAA 86 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHH
T ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence 4589999999999999999999999887 5777999999999985 99999999999999988 889999999 999999
Q ss_pred HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHH
Q 012836 120 IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191 (455)
Q Consensus 120 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A 191 (455)
..|+.+++++|+++ +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||.+-+
T Consensus 87 ~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 87 REGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT------RGSNHARIDAAEGP 151 (156)
T ss_dssp HHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------------
T ss_pred HCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC------CccCcCcCcccccC
Confidence 99999999999998 8999999999999999999999999999999999987 88999999998744
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=1.3e-24 Score=181.65 Aligned_cols=126 Identities=22% Similarity=0.291 Sum_probs=118.0
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCC-CCCHHHHHH
Q 012836 41 ASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPE-RKTPLHFAA 119 (455)
Q Consensus 41 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-g~tpLh~A~ 119 (455)
..|.||||.|+..|+.+++++|++++.+ ++..|..|+||||+|+. |+.+++++|++.++++ +.+|.. |.||||+|+
T Consensus 10 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~ 86 (136)
T 1d9s_A 10 GSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVHDAA 86 (136)
T ss_dssp CCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHHHHH
T ss_pred CCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHHHHH
Confidence 4599999999999999999999999877 57779999999999999 9999999999999998 788888 999999999
Q ss_pred HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhh
Q 012836 120 IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRD 170 (455)
Q Consensus 120 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 170 (455)
..|+.+++++|++. +.+++..|..|+||||+|+..++.+++++|+++|++
T Consensus 87 ~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 87 REGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999987 889999999999999999999999999999998864
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=3.5e-24 Score=175.83 Aligned_cols=125 Identities=40% Similarity=0.615 Sum_probs=91.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHc
Q 012836 76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKN 155 (455)
Q Consensus 76 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 155 (455)
+|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHc
Confidence 3667777777777777777777776665 55666777777777777777777777765 666777777777777777777
Q ss_pred CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208 (455)
Q Consensus 156 ~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga 208 (455)
++.+++++|+++|.++ +.+|..|+||||+|+..++.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADV------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp TCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHcCCCC------cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 7777777777776665 6677777777777777777777777777776
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=1.7e-24 Score=180.94 Aligned_cols=125 Identities=28% Similarity=0.305 Sum_probs=76.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836 75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK 154 (455)
Q Consensus 75 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 154 (455)
..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+.
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAF 89 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHH
Confidence 33555666666666666666666665555 55555666666666666666666666654 55556666666666666666
Q ss_pred cCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcC
Q 012836 155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG 207 (455)
Q Consensus 155 ~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g 207 (455)
.|+.+++++|+++|+++ +.+|.+|+||||+|+..++.+++++|++.|
T Consensus 90 ~~~~~~v~~Ll~~g~~~------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 90 IGHLEIAEVLLKHGADV------NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHcCCCC------cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 66666666666665554 556666666666666666666666666554
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=1.3e-23 Score=172.46 Aligned_cols=125 Identities=32% Similarity=0.546 Sum_probs=114.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC
Q 012836 43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG 122 (455)
Q Consensus 43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 122 (455)
|.||||.|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence 78999999999999999999999877 5667889999999999999999999999999887 778889999999999999
Q ss_pred CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhh
Q 012836 123 RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRD 170 (455)
Q Consensus 123 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 170 (455)
+.+++++|+++ +.+++..|..|+||||+|+..++.+++++|+++|++
T Consensus 80 ~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 80 HLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999987 888888999999999999999999999999998764
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=7.9e-24 Score=176.87 Aligned_cols=124 Identities=22% Similarity=0.346 Sum_probs=112.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK 121 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 121 (455)
.+.||||.|+..|+.+++++|++.+.+ .+..|..|+||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence 378999999999999999999999877 5777889999999999999999999999999887 77888999999999999
Q ss_pred CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHh
Q 012836 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWI 168 (455)
Q Consensus 122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g 168 (455)
|+.+++++|++. +.+++..|.+|+||||+|+..|+.+++++|+++|
T Consensus 91 ~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 91 GHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999987 8888999999999999999999999999998754
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=7.2e-24 Score=177.27 Aligned_cols=129 Identities=22% Similarity=0.261 Sum_probs=102.8
Q ss_pred hhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHH
Q 012836 72 EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHL 151 (455)
Q Consensus 72 ~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~ 151 (455)
.+|..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHH
Confidence 45777888888888888888888888888777 67788888888888888888888888876 77788888888888888
Q ss_pred HHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836 152 AVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208 (455)
Q Consensus 152 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga 208 (455)
|+..|+.+++++|+++|+++ +.+|..|+||||+|+..+..+++++|.+.+.
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASR------NAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCT------TCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHcCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 88888888888888888776 7888888888888888877777777665543
No 92
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=8.9e-24 Score=191.90 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=117.4
Q ss_pred hhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHH
Q 012836 71 KEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLH 150 (455)
Q Consensus 71 ~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh 150 (455)
...+..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++..+.+++..|..|+||||
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH 145 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence 445778999999999999999999999999887 7889999999999999999999999999878999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCC
Q 012836 151 LAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG 223 (455)
Q Consensus 151 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g 223 (455)
+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..++.++++.|++.|+ +.+..|.+|
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~------~~~~~~~~~ 206 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGART------DLRNIEKKLAFDMATNAACASLLKKKQGTDA------VRTLSNAED 206 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCCS------CCCCTTSCCHHHHCCSHHHHHHHC----------------------
T ss_pred HHHHcCCHHHHHHHHHcCCCC------ccccCCCCCHHHHhcchhHHHHHHHHhccch------hhhccchhh
Confidence 999999999999999999887 8999999999999999999999999999988 455555443
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=4.6e-23 Score=181.44 Aligned_cols=138 Identities=19% Similarity=0.201 Sum_probs=123.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCC-CCCCCHHHHHHH
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG-PERKTPLHFAAI 120 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A~~ 120 (455)
.|.||||.|+..|+.++++.|++ +.+ ++..|..|+||||+|+..|+.+++++|++.++++ +.+| .+|+||||+|+.
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHh
Confidence 37899999999999999999999 655 6778999999999999999999999999999998 5566 889999999999
Q ss_pred hCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHH
Q 012836 121 KGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200 (455)
Q Consensus 121 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv 200 (455)
.|+.+++++|+++ +.+++..|.+|+||||+|++.++ ...+.++|++|+..|+.+++
T Consensus 120 ~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~-----------------------~~~~~~~l~~a~~~~~~~i~ 175 (183)
T 3deo_A 120 YVRPEVVEALVEL-GADIEVEDERGLTALELAREILK-----------------------TTPKGNPMQFGRRIGLEKVI 175 (183)
T ss_dssp TTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHH-----------------------TCCCCSHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhcc-----------------------CcccccHHHHHHHcCHHHHH
Confidence 9999999999998 89999999999999999986321 14567999999999999999
Q ss_pred HHHHhc
Q 012836 201 ELLLSH 206 (455)
Q Consensus 201 ~~Ll~~ 206 (455)
++|.++
T Consensus 176 ~~L~~~ 181 (183)
T 3deo_A 176 NVLEGQ 181 (183)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 999865
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=3.4e-23 Score=173.16 Aligned_cols=128 Identities=28% Similarity=0.287 Sum_probs=114.2
Q ss_pred cCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCC
Q 012836 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN 185 (455)
Q Consensus 106 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~ 185 (455)
.+|.+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~ 77 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV------NTTGYQND 77 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCGGGC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc------cCcCCCCC
Confidence 5788999999999999999999999997 8899999999999999999999999999999998886 88999999
Q ss_pred cHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhc
Q 012836 186 TALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAG 250 (455)
Q Consensus 186 T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~g 250 (455)
||||+|+..++.+++++|+++|+ +++.+|..|.||+|+|. ..+..+++++|.+.+
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~----~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 78 SPLHDAAKNGHVDIVKLLLSYGA------SRNAVNIFGLRPVDYTD----DESMKSLLLLPEKNE 132 (137)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCGGGGCC----CHHHHHHHSCC----
T ss_pred CHHHHHHHcCCHHHHHHHHHcCC------CCCCCCCCCCCHHHHHh----hccHHHHHhhccccc
Confidence 99999999999999999999998 89999999999999994 345566666655443
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=4.4e-23 Score=190.27 Aligned_cols=140 Identities=19% Similarity=0.189 Sum_probs=126.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCC-CCCCCHHHHHHH
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG-PERKTPLHFAAI 120 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A~~ 120 (455)
.|.||||.|+..|+.++++.|++ +.+ ++..|..|+||||+|+..|+.+++++|+++++++ +.+| ..|.||||+|+.
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHH
Confidence 38899999999999999999999 665 6778999999999999999999999999999998 5566 889999999999
Q ss_pred hCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHH
Q 012836 121 KGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200 (455)
Q Consensus 121 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv 200 (455)
.|+.+++++|+++ +.+++..|..|+||||+|+..+ .+..+.||||+|+..|+.+++
T Consensus 121 ~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~-----------------------~~~~~~~~l~~a~~~g~~~iv 176 (244)
T 3ui2_A 121 YVRPEVVEALVEL-GADIEVEDERGLTALELAREIL-----------------------KTTPKGNPMQFGRRIGLEKVI 176 (244)
T ss_dssp TTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHH-----------------------TTCCCSSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHH-----------------------hccCCCCHHHHHHHcChHHHH
Confidence 9999999999998 8999999999999999998521 235688999999999999999
Q ss_pred HHHHhcCC
Q 012836 201 ELLLSHGA 208 (455)
Q Consensus 201 ~~Ll~~ga 208 (455)
++|++++.
T Consensus 177 ~~L~~~~~ 184 (244)
T 3ui2_A 177 NVLEGQVF 184 (244)
T ss_dssp HHHHHHHE
T ss_pred HHHHHhcc
Confidence 99998765
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=192.42 Aligned_cols=138 Identities=22% Similarity=0.178 Sum_probs=92.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCcccccc-----CCCCCCCHHHHHHHh---CCHHHHHHHHHhcCccccccccCCCcH
Q 012836 77 GFSPMHMASANGQIDVVRGLMKFDQKLCHL-----QGPERKTPLHFAAIK---GRVDVVSEMLSAYGECAEDVSVQRETV 148 (455)
Q Consensus 77 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~ 148 (455)
+.++||.|+..|+.+.++.|++.++++... .+..|.||||+|+.. |+.+++++|++. +.+++..|.+|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCH
Confidence 345677777777777777777776665221 466677777777765 677777777776 66677777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHH
Q 012836 149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228 (455)
Q Consensus 149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~ 228 (455)
||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..++.+++++|+++|++ .|.||||
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~------~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------------~g~tpLh 291 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALV------GTVNEAGETALDIARKKHHKECEELLEQAQAG------------TFAFPLH 291 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCC------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------------TTSSCCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------------CCCChhH
Confidence 77777777777777777776665 66777777777777777777777777777766 2567777
Q ss_pred HHhhC
Q 012836 229 VLLSF 233 (455)
Q Consensus 229 ~a~~~ 233 (455)
+|+..
T Consensus 292 ~A~~~ 296 (301)
T 2b0o_E 292 VDYSW 296 (301)
T ss_dssp -----
T ss_pred HHHhc
Confidence 77554
No 97
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1.4e-22 Score=178.27 Aligned_cols=141 Identities=23% Similarity=0.222 Sum_probs=125.3
Q ss_pred hcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccc-cCCCcHHHH
Q 012836 73 VNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS-VQRETVLHL 151 (455)
Q Consensus 73 ~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~ 151 (455)
.+.+|.||||+|+..|+.++++.|++ +.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..+ ..|+||||+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHH
Confidence 36689999999999999999999999 7776 88999999999999999999999999997 88898888 889999999
Q ss_pred HHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836 152 AVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL 231 (455)
Q Consensus 152 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~ 231 (455)
|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..++. ..+.++++++.
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~------~~~d~~g~tpl~~A~~~~~~-----------------------~~~~~~l~~a~ 167 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADI------EVEDERGLTALELAREILKT-----------------------TPKGNPMQFGR 167 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCT------TCCCTTSCCHHHHHHHHHHT-----------------------CCCCSHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCC------cCCCCCCCCHHHHHHHhccC-----------------------cccccHHHHHH
Confidence 99999999999999999887 89999999999999864321 34679999996
Q ss_pred hCCCCcCchhHHHHHHHh
Q 012836 232 SFPSEAGDREIEEIFWSA 249 (455)
Q Consensus 232 ~~~~~~~~~~i~~~L~~~ 249 (455)
. .+..+++++|.++
T Consensus 168 ~----~~~~~i~~~L~~~ 181 (183)
T 3deo_A 168 R----IGLEKVINVLEGQ 181 (183)
T ss_dssp H----HHHHHHHHHHHTC
T ss_pred H----cCHHHHHHHHHHh
Confidence 4 4788899998754
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=1.3e-22 Score=166.35 Aligned_cols=108 Identities=22% Similarity=0.238 Sum_probs=57.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHc
Q 012836 76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKN 155 (455)
Q Consensus 76 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 155 (455)
.|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHc
Confidence 3445555555555555555555555444 44455555555555555555555555544 445555555555555555555
Q ss_pred CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHH
Q 012836 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191 (455)
Q Consensus 156 ~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A 191 (455)
++.+++++|+++|+++ +.+|.+|+||||+|
T Consensus 84 ~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 84 GHVSCVKLLLSKGADK------TVKGPDGLTAFEAT 113 (123)
T ss_dssp TCHHHHHHHHHTTCCT------TCCCTTSCCHHHHC
T ss_pred CCHHHHHHHHHcCCCC------CCcCCCCCCHHHHh
Confidence 5555555555555544 55555555555555
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=5.6e-22 Score=162.46 Aligned_cols=110 Identities=28% Similarity=0.357 Sum_probs=103.1
Q ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcH
Q 012836 108 GPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187 (455)
Q Consensus 108 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~ 187 (455)
+..|.||||.|+..|+.+++++|++. +.+++..|..|+||||+|+..++.+++++|+++|+++ +.+|..|+||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~d~~g~tp 76 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI------NAPDKHHITP 76 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT------TCCCTTSCCH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------CcCCCCCCCH
Confidence 46788999999999999999999997 7889999999999999999999999999999998887 8999999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHH
Q 012836 188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL 230 (455)
Q Consensus 188 Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a 230 (455)
||+|+..++.+++++|+++|+ +++.+|..|.||+|+|
T Consensus 77 L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 77 LLSAVYEGHVSCVKLLLSKGA------DKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHh
Confidence 999999999999999999998 8899999999999999
No 100
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=3.5e-22 Score=184.24 Aligned_cols=144 Identities=16% Similarity=0.217 Sum_probs=125.1
Q ss_pred CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhc-CCCCcHHHH
Q 012836 5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVN-QDGFSPMHM 83 (455)
Q Consensus 5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpLh~ 83 (455)
++.|+|+||.|+..|+.+.++.|++ +.+.... +..|.||||+|+..|+.+++++|++++.++ +..+ ..|+||||+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~ 117 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence 3578899999999999999999999 5544332 345999999999999999999999999885 4445 889999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHH
Q 012836 84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163 (455)
Q Consensus 84 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~ 163 (455)
|+..|+.+++++|+++++++ +.+|..|.||||+|+..++ +..+.||||+|+..|+.+++++
T Consensus 118 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~ 178 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINV 178 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHH
Confidence 99999999999999999998 8899999999999986332 2467899999999999999999
Q ss_pred HHHHhhhh
Q 012836 164 LVDWIRDV 171 (455)
Q Consensus 164 Ll~~g~~~ 171 (455)
|++.+.+.
T Consensus 179 L~~~~~~~ 186 (244)
T 3ui2_A 179 LEGQVFEY 186 (244)
T ss_dssp HHHHHEEE
T ss_pred HHHhcccc
Confidence 99876553
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=3.8e-22 Score=181.09 Aligned_cols=127 Identities=22% Similarity=0.311 Sum_probs=112.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhc-CccccccCCCCCCCHHHHHHH
Q 012836 42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF-DQKLCHLQGPERKTPLHFAAI 120 (455)
Q Consensus 42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~ 120 (455)
.|.||||+|+..|+.++++.|++.+.+ ++..|..|+||||+|+..|+.+++++|++. +.++ +.+|..|.||||+|+.
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAW 149 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHH
Confidence 368999999999999999999999887 577799999999999999999999999998 7776 8899999999999999
Q ss_pred hCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhh
Q 012836 121 KGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171 (455)
Q Consensus 121 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~ 171 (455)
.|+.+++++|+++ |.+++..|.+|+||||+|+..++.++++.+++.++..
T Consensus 150 ~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 150 KGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp HTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred cCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 9999999999998 9999999999999999999999999999999988765
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=9.5e-22 Score=186.89 Aligned_cols=141 Identities=19% Similarity=0.151 Sum_probs=122.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCcchhh-----hcCCCCcHHHHHHHc---CCHHHHHHHHhcCccccccCCCCCCCH
Q 012836 43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKE-----VNQDGFSPMHMASAN---GQIDVVRGLMKFDQKLCHLQGPERKTP 114 (455)
Q Consensus 43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tp 114 (455)
..++||.|+..|+.+.++.|++.++++... .+..|.||||+|+.. |+.+++++|++.++++ +.+|.+|.||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence 447799999999999999999999884332 588999999999997 8999999999999998 8899999999
Q ss_pred HHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhc
Q 012836 115 LHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK 194 (455)
Q Consensus 115 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~ 194 (455)
||+|+..|+.+++++|++. |++++..|.+|+||||+|+..++.+++++|+++|++ .|+||||+|+..
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------------~g~tpLh~A~~~ 296 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------------TFAFPLHVDYSW 296 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------------TTSSCCC-----
T ss_pred HHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------------CCCChhHHHHhc
Confidence 9999999999999999997 999999999999999999999999999999998765 478999999988
Q ss_pred CCh
Q 012836 195 REC 197 (455)
Q Consensus 195 ~~~ 197 (455)
|+.
T Consensus 297 g~~ 299 (301)
T 2b0o_E 297 VIS 299 (301)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=1.7e-21 Score=183.10 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=116.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCcccc-----ccCCCCCCCHHHHHHHh---CCHHHHHHHHHhcCccccccccCCCcH
Q 012836 77 GFSPMHMASANGQIDVVRGLMKFDQKLC-----HLQGPERKTPLHFAAIK---GRVDVVSEMLSAYGECAEDVSVQRETV 148 (455)
Q Consensus 77 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~ 148 (455)
..++|+.|+..|+.+.++.+++.+.+.. +..|..|.||||+|+.. |+.+++++|++. |.+++..|.+|+||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~Tp 208 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCH
Confidence 4578999999999999999999998852 44588899999999999 899999999998 89999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836 149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208 (455)
Q Consensus 149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga 208 (455)
||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|+++|+
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASI------EIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC------CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999999987 8999999999999999999999999999998
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=5.1e-21 Score=186.18 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=118.2
Q ss_pred CCCcHHHHHHHc-CCHHHHHHHHhcCccccccCC--CCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHH
Q 012836 76 DGFSPMHMASAN-GQIDVVRGLMKFDQKLCHLQG--PERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLA 152 (455)
Q Consensus 76 ~g~tpLh~Aa~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A 152 (455)
.+.|+||.|+.. |+.++++.|++.++++ +..+ .+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh~A 275 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHA 275 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHH
Confidence 456899999999 9999999999999998 6667 8899999999999999999999998 899999999999999999
Q ss_pred HHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhh
Q 012836 153 VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232 (455)
Q Consensus 153 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~ 232 (455)
+..|+.+++++|+++|+++ +.+|.+|+||||+|+..++.+++++|++.+.. ..+....+..+.|+++++..
T Consensus 276 ~~~g~~~~v~~LL~~Gad~------~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~---~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADL------GARDSEGRDPLTIAMETANADIVTLLRLAKMR---EAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred HHcCcHHHHHHHHHCcCCC------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---cccccccCCCCCCHHHHHHH
Confidence 9999999999999999987 89999999999999999999999999988763 22455667788999988854
Q ss_pred C
Q 012836 233 F 233 (455)
Q Consensus 233 ~ 233 (455)
+
T Consensus 347 ~ 347 (368)
T 3jue_A 347 F 347 (368)
T ss_dssp -
T ss_pred H
Confidence 3
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=2.6e-20 Score=174.97 Aligned_cols=125 Identities=26% Similarity=0.284 Sum_probs=114.1
Q ss_pred CCHHHHHHHhCCHHHHHHHHHhcCcc------ccccccCCCcHHHHHHHc---CCHHHHHHHHHHhhhhcccccccccCC
Q 012836 112 KTPLHFAAIKGRVDVVSEMLSAYGEC------AEDVSVQRETVLHLAVKN---NQFEVVRALVDWIRDVKKENILNMKDK 182 (455)
Q Consensus 112 ~tpLh~A~~~g~~~~v~~Ll~~~~~~------~~~~~~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~~~d~ 182 (455)
.++|+.|+..|+.+.++.++.. +.+ ++..|..|+||||+|+.. ++.+++++|+++|+++ |.+|.
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i------n~~d~ 203 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL------DKQTG 203 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT------TCCCT
T ss_pred hhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc------cccCC
Confidence 4689999999999999999987 555 344478899999999999 8999999999999987 89999
Q ss_pred CCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccc
Q 012836 183 QGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMR 253 (455)
Q Consensus 183 ~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~ 253 (455)
.|+||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|.. .++.+++++|+++|+.+
T Consensus 204 ~g~TpLh~A~~~g~~~~v~~Ll~~ga------d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 204 KGSTALHYCCLTDNAECLKLLLRGKA------SIEIANESGETPLDIAKR----LKHEHCEELLTQALSGR 264 (278)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999 899999999999999975 47899999999999954
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=3.3e-20 Score=180.50 Aligned_cols=147 Identities=18% Similarity=0.159 Sum_probs=116.6
Q ss_pred CChHHHHHHHc-CCHHHHHHHHHcCCcchhhhc--CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHH
Q 012836 43 AGNPLHVASAY-GHVDFVKEIIRLKPDFAKEVN--QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAA 119 (455)
Q Consensus 43 g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~ 119 (455)
+.|+||.|+.. |+.++++.|++++.+ ++..+ ..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHAT 276 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 45899999999 999999999999988 45556 88999999999999999999999999998 889999999999999
Q ss_pred HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcC
Q 012836 120 IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKR 195 (455)
Q Consensus 120 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~ 195 (455)
..|+.+++++|+++ +.+++..|.+|+||||+|+..++.+++++|++.+... ......+..+.|+++++....
T Consensus 277 ~~g~~~~v~~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~---~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 277 ILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE---AEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------------
T ss_pred HcCcHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc---ccccccCCCCCCHHHHHHHHH
Confidence 99999999999998 8999999999999999999999999999999877442 122455677889998887553
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=3.2e-20 Score=188.96 Aligned_cols=134 Identities=22% Similarity=0.187 Sum_probs=115.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCccccccC------CCCCCCHHHHHHH---hCCHHHHHHHHHhcCccccccccCCCcH
Q 012836 78 FSPMHMASANGQIDVVRGLMKFDQKLCHLQ------GPERKTPLHFAAI---KGRVDVVSEMLSAYGECAEDVSVQRETV 148 (455)
Q Consensus 78 ~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~g~t~ 148 (455)
.+.||.|+..|+.++++.|++.++++ +.. |..|.||||+|+. .|+.+++++|+++ |++++..|.+|+||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCCTTCCCSSSCCH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc-CCCCCccCCCCCcH
Confidence 36799999999999999999999887 544 8899999999966 9999999999997 89999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHH
Q 012836 149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228 (455)
Q Consensus 149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~ 228 (455)
||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|+++|+ +++. +|+|
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga------~~~~------~~~h 272 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALV------GTVNEAGETALDIARKKHHKECEELLEQAQA------GTFA------FPLH 272 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCC------SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC------CCCC------Ccce
Confidence 99999999999999999999987 8999999999999999999999999999999 5554 5666
Q ss_pred HHh
Q 012836 229 VLL 231 (455)
Q Consensus 229 ~a~ 231 (455)
.+.
T Consensus 273 ~~~ 275 (497)
T 3lvq_E 273 VDY 275 (497)
T ss_dssp ---
T ss_pred eec
Confidence 653
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=5.5e-20 Score=142.64 Aligned_cols=92 Identities=45% Similarity=0.618 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHH
Q 012836 110 ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALH 189 (455)
Q Consensus 110 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh 189 (455)
+|+||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~d~~g~t~l~ 73 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------NAKDKNGRTPLH 73 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CccCCCCCCHHH
Confidence 366777777777777777777765 6667777777777777777777777777777777665 667777777777
Q ss_pred HHHhcCChHHHHHHHhcCC
Q 012836 190 LATWKRECQVVELLLSHGA 208 (455)
Q Consensus 190 ~A~~~~~~~iv~~Ll~~ga 208 (455)
+|+..|+.+++++|+++|+
T Consensus 74 ~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 74 LAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HHHHTTCHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHcCC
Confidence 7777777777777777765
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=6.5e-20 Score=186.65 Aligned_cols=136 Identities=20% Similarity=0.180 Sum_probs=115.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCcchhhh------cCCCCcHHHHHHH---cCCHHHHHHHHhcCccccccCCCCCCC
Q 012836 43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEV------NQDGFSPMHMASA---NGQIDVVRGLMKFDQKLCHLQGPERKT 113 (455)
Q Consensus 43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~------~~~g~tpLh~Aa~---~g~~~iv~~Ll~~~~~~~~~~d~~g~t 113 (455)
..+.||.|+..|+.+.++.|++.+.++ +.. |..|.||||+||. .|+.+++++|+++|+++ +.+|.+|+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~T 209 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 209 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCc
Confidence 457899999999999999999999874 433 7889999999976 99999999999999998 889999999
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHh
Q 012836 114 PLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATW 193 (455)
Q Consensus 114 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~ 193 (455)
|||+|+..|+.+++++|+++ |++++..|.+|+||||+|+..|+.+++++|+++|++. +. +|+|.+..
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~------~~------~~~h~~~~ 276 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT------FA------FPLHVDYS 276 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHT-CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC------CC------Ccceeecc
Confidence 99999999999999999997 9999999999999999999999999999999999886 33 68887653
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=8.3e-20 Score=141.64 Aligned_cols=90 Identities=34% Similarity=0.564 Sum_probs=42.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcC
Q 012836 77 GFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNN 156 (455)
Q Consensus 77 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~ 156 (455)
|+||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..|+.+++++|++. +.+++..|.+|+||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcC
Confidence 444444444444444444444444444 44444444444444444444444444443 4444444444455555555555
Q ss_pred CHHHHHHHHHHh
Q 012836 157 QFEVVRALVDWI 168 (455)
Q Consensus 157 ~~~~v~~Ll~~g 168 (455)
+.+++++|+++|
T Consensus 80 ~~~~~~~Ll~~g 91 (93)
T 1n0q_A 80 HLEVVKLLLEAG 91 (93)
T ss_dssp CHHHHHHHHHTT
T ss_pred CHHHHHHHHHcC
Confidence 555555544443
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=4.1e-20 Score=149.32 Aligned_cols=109 Identities=37% Similarity=0.450 Sum_probs=86.7
Q ss_pred cCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCC
Q 012836 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN 185 (455)
Q Consensus 106 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~ 185 (455)
.+|.+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..++.+++++|+++|+++ +.+|..|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~d~~g~ 76 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV------NARSKDGN 76 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT------TCCCTTCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC------cccCCCCC
Confidence 4677788888888888888888888876 6777777888888888888888888888888877776 77888888
Q ss_pred cHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHH
Q 012836 186 TALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227 (455)
Q Consensus 186 T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l 227 (455)
||||+|+..++.+++++|+++|+ +++.++..|.||-
T Consensus 77 tpl~~A~~~~~~~~~~~Ll~~ga------~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 77 TPEHLAKKNGHHEIVKLLDAKGA------DVNARSWGSSHHH 112 (115)
T ss_dssp CTTHHHHTTTCHHHHHHHHTTSS------SHHHHSCCCC---
T ss_pred CHHHHHHHCCCHHHHHHHHHcCC------CCCcCCccccccc
Confidence 88888888888888888888888 7888888887763
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=9.9e-20 Score=147.03 Aligned_cols=107 Identities=30% Similarity=0.417 Sum_probs=65.9
Q ss_pred hcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHH
Q 012836 73 VNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLA 152 (455)
Q Consensus 73 ~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A 152 (455)
+|.+|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHH
Confidence 3555666666666666666666666666555 55566666666666666666666666655 555666666666666666
Q ss_pred HHcCCHHHHHHHHHHhhhhcccccccccCCCCCcH
Q 012836 153 VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187 (455)
Q Consensus 153 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~ 187 (455)
+..++.+++++|+++|+++ |.++..|.||
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~------n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADV------NARSWGSSHH 111 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSH------HHHSCCCC--
T ss_pred HHCCCHHHHHHHHHcCCCC------CcCCcccccc
Confidence 6666666666666666665 5556655554
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.70 E-value=4.7e-17 Score=130.23 Aligned_cols=87 Identities=26% Similarity=0.316 Sum_probs=35.9
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHH
Q 012836 74 NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAV 153 (455)
Q Consensus 74 ~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~ 153 (455)
|.+|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCcHHHHHH
Confidence 334444444444444444444444444333 33344444444444444444444444433 3334444444444444444
Q ss_pred HcCCHHHHH
Q 012836 154 KNNQFEVVR 162 (455)
Q Consensus 154 ~~~~~~~v~ 162 (455)
..|+.++++
T Consensus 99 ~~~~~~~~~ 107 (110)
T 2zgd_A 99 DNGNEDLAE 107 (110)
T ss_dssp HHTCHHHHH
T ss_pred HcCCHHHHH
Confidence 444444443
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=6.7e-17 Score=129.34 Aligned_cols=92 Identities=29% Similarity=0.345 Sum_probs=84.5
Q ss_pred ccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCC
Q 012836 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQG 184 (455)
Q Consensus 105 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G 184 (455)
...|.+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~------~~~d~~g 90 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV------XAQDKFG 90 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTS
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------cccccCC
Confidence 45678899999999999999999999987 8899999999999999999999999999999998887 8999999
Q ss_pred CcHHHHHHhcCChHHHHHH
Q 012836 185 NTALHLATWKRECQVVELL 203 (455)
Q Consensus 185 ~T~Lh~A~~~~~~~iv~~L 203 (455)
+||||+|+..|+.+++++|
T Consensus 91 ~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHh
Confidence 9999999999999999987
No 115
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=58.26 E-value=60 Score=26.99 Aligned_cols=134 Identities=12% Similarity=0.089 Sum_probs=81.5
Q ss_pred cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836 6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS 85 (455)
Q Consensus 6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa 85 (455)
.+-++.+-.|+..|+++....+.++-. .. ...+..=..|...|+.++++....+-.+.. ..+.+..
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l~----~~--~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~--------~L~~Ly~ 71 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKLN----DS--ITWERLIQEALAQGNASLAEMIYQTQHSFD--------KLSFLYL 71 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHC----CH--HHHHHHHHHHHHTTCHHHHHHHHHHTTCHH--------HHHHHHH
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHhC----CH--HHHHHHHHHHHHcCChHHHHHHHHHhCCHH--------HHHHHHH
Confidence 445688889999999998888766421 00 012233346677899999998888766642 2355666
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 012836 86 ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165 (455)
Q Consensus 86 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll 165 (455)
..|+.+-++.+.+... ...+.....+.+...|+++-...++...+.. .-+...|-.+|..+..+-++
T Consensus 72 ~tg~~e~L~kla~iA~-----~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~~~~ 138 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIAQ-----TREDFGSMLLNTFYNNSTKERSSIFAEGGSL--------PLAYAVAKANGDEAAASAFL 138 (177)
T ss_dssp HHTCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH-----HCccHHHHHHHHHHcCCHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHHHHH
Confidence 6788777776654311 1122345677777788876555555442211 12345566677777777766
Q ss_pred H
Q 012836 166 D 166 (455)
Q Consensus 166 ~ 166 (455)
+
T Consensus 139 ~ 139 (177)
T 3mkq_B 139 E 139 (177)
T ss_dssp H
T ss_pred H
Confidence 5
No 116
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=43.54 E-value=49 Score=31.39 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=36.9
Q ss_pred HHHcCCHHHHHHHHhcCCcccCC------------CCCCCCChHHHHHHHcCCHHHHHHHHH
Q 012836 15 AALTGDVQTLQQLFVENPLILHT------------PAFASAGNPLHVASAYGHVDFVKEIIR 64 (455)
Q Consensus 15 A~~~g~~~~v~~Ll~~~~~~~~~------------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 64 (455)
.+..||...|+.++.++.+.... ...+-|.|.+|+|++..+.+++..|+.
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 45689999999999988764221 112237888888888888888888876
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=42.90 E-value=1.4e+02 Score=24.66 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=83.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHH-HHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836 43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPM-HMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK 121 (455)
Q Consensus 43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL-h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 121 (455)
-++=+-.|...|+.+.+..+.+...+ ..-|.-| ..|...|+.++++.-..+-.+. ...+.+....
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l~~------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~t 73 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKLND------SITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVT 73 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHCC------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHhCC------HHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHh
Confidence 35668899999999988877664211 1112223 4567889999999888765544 2344555667
Q ss_pred CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCH-HHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHH
Q 012836 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF-EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200 (455)
Q Consensus 122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~-~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv 200 (455)
|+.+-++.+.+.. ....+-..+++.+-..|+. +.+++|.+.|.-. -+.-.|..+|..++.
T Consensus 74 g~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~--------------eA~~~A~t~g~~~~a 134 (177)
T 3mkq_B 74 GDVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP--------------LAYAVAKANGDEAAA 134 (177)
T ss_dssp TCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH--------------HHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH--------------HHHHHHHHcCcHHHH
Confidence 7877777665431 1112334567777778875 5667776644322 355566778888888
Q ss_pred HHHHhc
Q 012836 201 ELLLSH 206 (455)
Q Consensus 201 ~~Ll~~ 206 (455)
+-+++.
T Consensus 135 ~~~~~~ 140 (177)
T 3mkq_B 135 SAFLEQ 140 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 118
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=42.60 E-value=11 Score=22.45 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=16.1
Q ss_pred cCHHHHHHHHcCCHHHHHHHHh
Q 012836 8 MDRRLIAAALTGDVQTLQQLFV 29 (455)
Q Consensus 8 ~~t~L~~A~~~g~~~~v~~Ll~ 29 (455)
.+..++.||..||.+.++.|-.
T Consensus 13 iEQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 13 IRKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 3456788888888888887643
No 119
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=27.77 E-value=81 Score=29.23 Aligned_cols=196 Identities=9% Similarity=-0.010 Sum_probs=91.6
Q ss_pred cCHHHHHHHHcCCHHHHHHHHhcCC-cccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-cc-hhhhcCCCCcHHHHH
Q 012836 8 MDRRLIAAALTGDVQTLQQLFVENP-LILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKP-DF-AKEVNQDGFSPMHMA 84 (455)
Q Consensus 8 ~~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~-~~~~~~~g~tpLh~A 84 (455)
|-..|......++.+..+.++++-. ....-..+..|+..+......|+.+....+++.-. .+ .-..+..|.-.+..+
T Consensus 37 gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~ 116 (351)
T 3gvo_A 37 GSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKA 116 (351)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHH
T ss_pred chHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHH
Confidence 3344555566666665555554311 11111222236666666667777766666655321 11 122355566666666
Q ss_pred HHcCCHHHHHHHHhcC-cc-ccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccc--ccccCCCcHHHHHHHcCCHHH
Q 012836 85 SANGQIDVVRGLMKFD-QK-LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAE--DVSVQRETVLHLAVKNNQFEV 160 (455)
Q Consensus 85 a~~g~~~iv~~Ll~~~-~~-~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~g~t~Lh~A~~~~~~~~ 160 (455)
......+-...+++.- +. ..-.+|..|...+......+..+..+.+++....... ..+..|...+..+......+-
T Consensus 117 le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~ 196 (351)
T 3gvo_A 117 LESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ 196 (351)
T ss_dssp HHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHH
T ss_pred HHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHH
Confidence 5555554434443321 11 1123455555555555444444443444433211110 112334444444444433332
Q ss_pred HHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhc
Q 012836 161 VRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206 (455)
Q Consensus 161 v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 206 (455)
...+++...+ ....-..|..||-.+......+..+..+.+++.
T Consensus 197 ~~~ii~~l~~---~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~ 239 (351)
T 3gvo_A 197 TLPILEELHQ---HTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSE 239 (351)
T ss_dssp HHHHHHHHHT---THHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHHHHhh---hHHhcCCCchHHHHHHHHHHhCchhhHHHHHHH
Confidence 2222221111 011134688888888888888777766666653
No 120
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=23.92 E-value=94 Score=24.05 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012836 421 LFVTLTVAIMPAVIALAAYLLRQHRKRHT 449 (455)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (455)
+.++++..+.++++-+++-.+|+||....
T Consensus 55 YIL~vmgffgff~~GImLsYiRSKk~E~s 83 (138)
T 2k21_A 55 YVLMVLGFFGFFTLGIMLSYIRSKKLEHS 83 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhcccc
Confidence 33444455667777788888888887554
No 121
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=23.50 E-value=1.2e+02 Score=17.79 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 012836 425 LTVAIMPAVIALAAYLLRQHRKR 447 (455)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~ 447 (455)
+++++....+.|.+-++++++.+
T Consensus 11 livalIiaIVVWtiv~ieYrk~~ 33 (36)
T 1pi7_A 11 LVVAIIIAIVVWSIVIIEGRGGK 33 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666677766543
No 122
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=22.86 E-value=1.2e+02 Score=17.80 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhhhc
Q 012836 436 LAAYLLRQHRKRHTE 450 (455)
Q Consensus 436 ~~~~~~~~~~~~~~~ 450 (455)
++...-++|++|..+
T Consensus 18 Fl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 18 FMILRPQQKRTKEHK 32 (37)
T ss_dssp HHTHHHHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHH
Confidence 334444555544433
Done!