BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012837
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans, Northeast
Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 170/343 (49%), Gaps = 69/343 (20%)
Query: 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHH 102
KEK++ I GPT GK++ ++ LAKRLNGE+IS DS QVYRG DIG+AK ++ + VPHH
Sbjct: 2 KEKLVAIVGPTAVGKTKTSVXLAKRLNGEVISGDSXQVYRGXDIGTAKITAEEXDGVPHH 61
Query: 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPE 162
LIDI P E +SV F + A ++ ++GR+P + GGTGLY+ I+
Sbjct: 62 LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIH----------- 110
Query: 163 IIAEVNSELADLQRDGDWYAAVE-FVVKAG-----------DPK-ARSLAANDWYRLRRS 209
L D++ D D+ +E FV G DPK A ++ N++ R+ R+
Sbjct: 111 -----QFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRA 165
Query: 210 LEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS 269
LEIIK TG + + + H E S Y+ + L+
Sbjct: 166 LEIIKLTGK---------------TVTEQARHEEETPSP------------YNLVXIGLT 198
Query: 270 SHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCR 329
R LY I+ R + + +G++ EA L D G+ + +AIGY++ +YL
Sbjct: 199 XERDVLYDRINRRVDQXV--EEGLIDEAKKLYDRGI--RDCQSVQAIGYKEXYDYL---- 250
Query: 330 QQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLN 372
G + E + ++ SR +AKRQLTWFRN+ W +
Sbjct: 251 --DGNVTLEE---AIDTLKRNSRRYAKRQLTWFRNKANVTWFD 288
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 170/342 (49%), Gaps = 42/342 (12%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
+IVI GPT +GK++L++E+AK+ NGEIIS DS QVY+G DIG+AK ++ + + +PH+ ID
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSXQVYQGXDIGTAKVTTEEXEGIPHYXID 68
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 165
IL P +S +F + A KD+ ++G+VPI+ GGTGLY++ +Y ++ E
Sbjct: 69 ILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKX 128
Query: 166 EVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQI 225
+ + E++ A+ + N+ R+ R++E T S+ +
Sbjct: 129 KQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSRK- 187
Query: 226 PYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCED 285
F E +YD + + R LY I+ R +
Sbjct: 188 KVQQFTE---------------------------NYDTLLIGIEXSRETLYLRINKRVDI 220
Query: 286 MLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLA 345
L G+ +E L+++G ++ + +AIGY++ + + +G S +
Sbjct: 221 XL--GHGLFNEVQHLVEQGF--EASQSXQAIGYKELVPVI-----KGNISXENA----VE 267
Query: 346 EFQKASRNFAKRQLTWFRNERIYHWLNAAR-PLENVLNYIIT 386
+ ++ SR +AKRQLTWF+N+ HWLN R L+ L+ I T
Sbjct: 268 KLKQHSRQYAKRQLTWFKNKXNVHWLNKERXSLQXXLDEITT 309
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 161/340 (47%), Gaps = 44/340 (12%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
++ + K I + GPT +GK+ LA+EL K L E+IS DS +Y+G+DIG+AKP++ +
Sbjct: 4 ISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELL 63
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
PH L+DI P + YS F DA D+ GR+P++ GGT LY + + G +P
Sbjct: 64 AAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLP 123
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARS-LAANDWYRLRRSLEIIKST 216
A PE+ A + + A+ + ++ ++ DP A + + ND RL R+LE+
Sbjct: 124 SADPEVRARIEQQAAE-----QGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEV---- 174
Query: 217 GSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLY 276
F I + E + +S Y+ + A A + R L+
Sbjct: 175 ------FFISGKTLTELTQTSGDALPYQVHQFAIA-----------------PASRELLH 211
Query: 277 RSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSS 336
+ I+ R ML + G +E L G L + R +GYRQ YL +G S
Sbjct: 212 QRIEQRFHQML--ASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYL-----EGEISY 264
Query: 337 TGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARP 376
Y + A+R AKRQ+TW R HWL++ +P
Sbjct: 265 DEMVYRGVC----ATRQLAKRQITWLRGWEGVHWLDSEKP 300
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 158/341 (46%), Gaps = 46/341 (13%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
++ + K I + GPT +GK+ LA+EL K L E+IS DS +Y+G DIG+AKP++ +
Sbjct: 4 ISKASLPKAIFLXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEELL 63
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
PH L+DI P + YS F DA D+ GR+P++ GGT LY + + G +P
Sbjct: 64 AAPHRLLDIRDPSQAYSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALLEGLSPLP 123
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARS-LAANDWYRLRRSLEIIKST 216
A PE+ A + + A+ + ++ ++ DP A + + ND RL R+LE+ +
Sbjct: 124 SADPEVRARIEQQAAE-----QGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFIS 178
Query: 217 GSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDL 275
G + + T+ L Y F ++ + R L
Sbjct: 179 GKTLTEL----------------------------TQTSGDALPYQVHQFAIAPASRELL 210
Query: 276 YRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTS 335
++ I+ R L + G +E L G L + R +GYRQ YL +G S
Sbjct: 211 HQRIEQRFHQXL--ASGFEAEVRALFARGDLHTDLPSIRCVGYRQXWSYL-----EGEIS 263
Query: 336 STGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARP 376
Y + A+R AKRQ+TW R HWL++ +P
Sbjct: 264 YDEXVYRGVC----ATRQLAKRQITWLRGWEGVHWLDSEKP 300
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/344 (32%), Positives = 154/344 (44%), Gaps = 37/344 (10%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDI 106
I + GPT AGK+ LA+ LA L E+IS DS +YRG+DIG+AKPS PH LIDI
Sbjct: 8 IFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDI 67
Query: 107 LHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAE 166
P E YS +F DA A +GR+P++ GGT LY + + G D+P A P E
Sbjct: 68 RDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADP----E 123
Query: 167 VNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIP 226
V + + + W A + + A + ND RL R+LE+ + G +
Sbjct: 124 VRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGG-------VS 176
Query: 227 YDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCED 285
R + + D AS N L Y ++ R L+ I R
Sbjct: 177 MSDLRRRQSAEKADFD--------ASGRN--QLPYTVAQLAIAPEQRQVLHARIAQRFRQ 226
Query: 286 MLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLA 345
ML G ++E L L + RA+GYRQ +YL G S YA +
Sbjct: 227 ML--EQGFIAEVEALHARSDLHAGLPSIRAVGYRQVWDYL-----DGKLS-----YAEMT 274
Query: 346 EFQ-KASRNFAKRQLTWFRNERIYHWLN--AARPLENVLNYIIT 386
E A+R AKRQ TW R+ HW++ A L L Y+ T
Sbjct: 275 ERGIIATRQLAKRQFTWLRSWSHLHWMDSLAGDNLPRALRYLKT 318
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 158/327 (48%), Gaps = 46/327 (14%)
Query: 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHL 103
+KVIVI+G TG GKSQL+++LA++ NGE+I++DS+QVY+ + I + K +R+ +PHH+
Sbjct: 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV 61
Query: 104 IDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEI 163
++ + E+Y +F + +A +D+ ++G++PIV GGT YL+ + D +
Sbjct: 62 MNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSE--- 118
Query: 164 IAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAF 223
++ + D+ D +VK A ND+ R++R LEI TG PS
Sbjct: 119 -RKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPS-- 175
Query: 224 QIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRC 283
++F E + L +D + +L S L++ +D R
Sbjct: 176 ----ETFNEQKIT----------------------LKFDTLFLWLYSKPEPLFQRLDDRV 209
Query: 284 EDMLPGSDGILSEAAWLLD----EGLLPNS--NSATRAIGYRQAMEYLLRCRQQGGT-SS 336
+DML G L E L + P N + IG+++ + +L G T +
Sbjct: 210 DDML--ERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLT-----GKTDDN 262
Query: 337 TGEFYAFLAEFQKASRNFAKRQLTWFR 363
T + + + +R +AKRQ+ W +
Sbjct: 263 TVKLEDCIERMKTRTRQYAKRQVKWIK 289
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp
Length = 339
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 79/136 (58%), Gaps = 8/136 (5%)
Query: 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPH 101
+KEK++V+ G TG GKS+L+++LA E+I++D +QVY+GLDI + K S DR VPH
Sbjct: 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPH 97
Query: 102 HLIDILHPCE-DYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKAS 160
HL+ + P + + F A A ++ + ++P++ GG+ ++ + + D +
Sbjct: 98 HLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFD--SSG 155
Query: 161 PEIIAE-----VNSEL 171
P + E V+SEL
Sbjct: 156 PGVFEEGSHSVVSSEL 171
>pdb|2ZE5|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase
pdb|2ZE6|A Chain A, Crystal Structure Of Adenosine
Phosphate-isopentenyltransferase Complexed With
Substrate Analog, Dmaspp
pdb|2ZE7|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With Zinc
Ion And Substrate Analog, Dmaspp
pdb|2ZE8|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|B Chain B, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|C Chain C, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|D Chain D, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
Length = 253
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 48 VISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSD 95
+I GPT +GK+ +A+++A+ +++ D VQ + GS +P S+
Sbjct: 5 LIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESE 52
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
Length = 173
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEIISADS-VQVYRGLDIG 87
I + GP GAGKS + +LA++LN E +D ++ G D+G
Sbjct: 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVG 48
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 13/61 (21%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
VI + GP+GAGK L LA+ LN ++ DS +YR L + + HH +D
Sbjct: 29 VITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIYRVLALAAL-----------HHQVD 75
Query: 106 I 106
I
Sbjct: 76 I 76
>pdb|3NA8|A Chain A, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|B Chain B, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|C Chain C, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|D Chain D, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
Length = 315
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 129 VLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAA----- 183
+L +GRVP G L L F+ G A+P +I +N +L DGD A
Sbjct: 199 LLGEGRVPFYNGXNPLALEAFVAGAKGWCSAAPNLIPTLNGQLYQAVLDGDLEKARALFY 258
Query: 184 -----VEFVVKAGDP 193
++F+++ G P
Sbjct: 259 RQLPLLDFILRRGLP 273
>pdb|2QMH|A Chain A, Structure Of V267f Mutant HprkP
pdb|2QMH|B Chain B, Structure Of V267f Mutant HprkP
pdb|2QMH|C Chain C, Structure Of V267f Mutant HprkP
pdb|2QMH|D Chain D, Structure Of V267f Mutant HprkP
pdb|2QMH|E Chain E, Structure Of V267f Mutant HprkP
pdb|2QMH|F Chain F, Structure Of V267f Mutant HprkP
pdb|2QMH|G Chain G, Structure Of V267f Mutant HprkP
pdb|2QMH|H Chain H, Structure Of V267f Mutant HprkP
pdb|2QMH|I Chain I, Structure Of V267f Mutant HprkP
pdb|2QMH|J Chain J, Structure Of V267f Mutant HprkP
pdb|2QMH|K Chain K, Structure Of V267f Mutant HprkP
pdb|2QMH|L Chain L, Structure Of V267f Mutant HprkP
Length = 205
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLD---IGSAKPSSSDRKEV 99
++I+G +G GKS+ ALEL +R +I+ D V VY+ + +G+A P S E+
Sbjct: 37 VLITGDSGVGKSETALELVQR-GHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEI 91
>pdb|1KKL|A Chain A, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKL|B Chain B, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKL|C Chain C, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKM|A Chain A, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
pdb|1KKM|B Chain B, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
pdb|1KKM|C Chain C, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
Length = 205
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLD---IGSAKPSSSDRKEV 99
++I+G +G GKS+ ALEL +R +I+ D V VY+ + +G+A P S E+
Sbjct: 37 VLITGDSGVGKSETALELVQR-GHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEI 91
>pdb|1JB1|A Chain A, Lactobacillus Casei Hprk/p Bound To Phosphate
Length = 205
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLD---IGSAKPSSSDRKEV 99
++I+G +G GKS+ ALEL +R +I+ D V VY+ + +G+A P S E+
Sbjct: 37 VLITGDSGVGKSETALELVQR-GHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEI 91
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYR 82
V+ + GP+G GKS +A ELA++L + D+ +YR
Sbjct: 6 VVAVDGPSGTGKSSVAKELARQLGASYL--DTGAMYR 40
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
Length = 310
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79
K I++ GPTG GK+++A LAK N I ++ +
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79
K I++ GPTG GK+++A LAK N I ++ +
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 84
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
Length = 444
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79
K I++ GPTG GK+++A LAK N I ++ +
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79
K I++ GPTG GK+++A LAK N I ++ +
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 91
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79
K I++ GPTG GK+++A LAK N I ++ +
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli Complexed With Dcmp
Length = 227
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
VI I GP+GAGK L +A+ L ++ DS +YR L + + HH +D
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIYRVLALAAL-----------HHHVD 53
Query: 106 I 106
+
Sbjct: 54 V 54
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
VI I GP+GAGK L +A+ L ++ DS +YR L + + HH +D
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIYRVLALAAL-----------HHHVD 53
Query: 106 I 106
+
Sbjct: 54 V 54
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
VI I GP+GAGK L +A+ L ++ DS +YR L + + HH +D
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIYRVLALAAL-----------HHHVD 53
Query: 106 I 106
+
Sbjct: 54 V 54
>pdb|1KO7|A Chain A, X-Ray Structure Of The Hpr KinasePHOSPHATASE FROM
Staphylococcus Xylosus At 1.95 A Resolution
pdb|1KO7|B Chain B, X-Ray Structure Of The Hpr KinasePHOSPHATASE FROM
Staphylococcus Xylosus At 1.95 A Resolution
Length = 314
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80
++I+G +G GKS+ ALEL KR +++ D+V++
Sbjct: 147 VLITGDSGIGKSETALELIKR-GHRLVADDNVEI 179
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQV----YRGLDI 86
I++ GPTG+GK+ +A LAK L+ I +D+ + Y G D+
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDV 118
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79
K I+ GPTG GK+++A LAK N I ++ +
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATK 85
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDI 106
I++ GPTG+GK+ LA LA+ L+ AD+ + +G ++V + + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG---------EDVENIIQKL 104
Query: 107 LHPCEDYSVGK 117
L C DY V K
Sbjct: 105 LQKC-DYDVQK 114
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDI 106
I++ GPTG+GK+ LA LA+ L+ AD+ + +G ++V + + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG---------EDVENIIQKL 104
Query: 107 LHPCEDYSVGK 117
L C DY V K
Sbjct: 105 LQKC-DYDVQK 114
>pdb|2P5T|B Chain B, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|D Chain D, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|F Chain F, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|H Chain H, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
Length = 253
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 27/128 (21%)
Query: 40 SSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEV 99
SSK+ I++ G +GAGK+ + K G I+ D S R +
Sbjct: 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIID---------------GDSFRSQH 72
Query: 100 PHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYG---KPDV 156
PH+ L ++Y GK D+ TKD K +VT + L I G DV
Sbjct: 73 PHY----LELQQEY--GK---DSVEYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDV 123
Query: 157 PKASPEII 164
PK + +++
Sbjct: 124 PKKTAQLL 131
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 48 VISGPTGAGKSQLALELAKRLNGEIISAD 76
+ +GPTG GK+++ ++L+K L E++ D
Sbjct: 492 LFAGPTGVGKTEVTVQLSKALGIELLRFD 520
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 177 DGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSP-----PSAFQIP 226
+GDWYA + F G P A +A N++Y + S++ T SP AF IP
Sbjct: 180 EGDWYAGINFAAVQGAP-AVFIAENNFYAI--SVDYRHQTHSPTIADKAHAFGIP 231
>pdb|2JAQ|A Chain A, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAQ|B Chain B, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAT|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
pdb|2JAT|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
Length = 205
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEI 72
I I G GAGKS ++ E++K+L EI
Sbjct: 3 IAIFGTVGAGKSTISAEISKKLGYEI 28
>pdb|2JAS|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|C Chain C, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|D Chain D, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|E Chain E, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|F Chain F, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
Length = 206
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEI 72
I I G GAGKS ++ E++K+L EI
Sbjct: 4 IAIFGTVGAGKSTISAEISKKLGYEI 29
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 44 EKVIVISGPTGAGKSQLALELAKRLN------GEIISADSVQVYR 82
+K+ +I+GP G GKS LA +L+ G+II+ V YR
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHXVVGGYR 46
>pdb|1KNX|A Chain A, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
pdb|1KNX|B Chain B, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
pdb|1KNX|C Chain C, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
pdb|1KNX|D Chain D, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
pdb|1KNX|E Chain E, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
pdb|1KNX|F Chain F, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
Length = 312
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQVYR 82
++++G +G GKS+ AL+L + N + D++++YR
Sbjct: 150 VLLTGRSGIGKSECALDLINK-NHLFVGDDAIEIYR 184
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 45 KVIVISGPTGAGKSQLALELAKRLNGEI 72
+ ++++GP G GK+ LAL +A+ L ++
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 45 KVIVISGPTGAGKSQLALELAKRLNGEI 72
+ ++++GP G GK+ LAL +A+ L ++
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKV 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,681,762
Number of Sequences: 62578
Number of extensions: 557003
Number of successful extensions: 1714
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1666
Number of HSP's gapped (non-prelim): 53
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)