BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012837
(455 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5J6|IPT9_ARATH tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9
PE=2 SV=1
Length = 463
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 287/431 (66%), Positives = 339/431 (78%), Gaps = 11/431 (2%)
Query: 28 RRRLFA--TSCSV-------ASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78
RRR A T+CSV S+KEKVIVISGPTGAGKS+LA+ELAKRLNGEIISADSV
Sbjct: 25 RRRFCAATTACSVPLNGNKKKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEIISADSV 84
Query: 79 QVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIV 138
QVY+GLD+GSAKPS SDRK VPHHLIDILHP +DYSVG+F++D R ATKD+L +GRVPIV
Sbjct: 85 QVYKGLDVGSAKPSDSDRKVVPHHLIDILHPSQDYSVGQFYDDGRQATKDILNRGRVPIV 144
Query: 139 TGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSL 198
TGGTGLYLRWF+YGKPDVPK SPE+IAE + L Q + +W AAVE VV AGDPKA SL
Sbjct: 145 TGGTGLYLRWFMYGKPDVPKPSPEVIAEAHDMLVGFQTEYNWDAAVELVVNAGDPKASSL 204
Query: 199 AANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPK- 257
NDWYRLRRSLEI+KSTGSPPS+F+IPYDSFR + + + D E SSA S N +
Sbjct: 205 PRNDWYRLRRSLEILKSTGSPPSSFRIPYDSFRVNLVAPDADDFLEDGSSADISIQNIET 264
Query: 258 DLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIG 317
DLDYDF+CFFLSS R+ LYRSID RCEDML G +G+LSEA WLLD GLLPNSN ATRAIG
Sbjct: 265 DLDYDFLCFFLSSPRVALYRSIDFRCEDMLSGPNGVLSEARWLLDLGLLPNSNPATRAIG 324
Query: 318 YRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPL 377
YRQAMEYLL+CR+ G SS EFYAFL +FQ ASRNFAKRQ+TWFR E +YHWLNA++PL
Sbjct: 325 YRQAMEYLLQCRRYEGESSPREFYAFLNKFQTASRNFAKRQMTWFRCEPMYHWLNASKPL 384
Query: 378 ENVLNYIITAYHDSTGTLVVPDYLQIRRDSSSSREVSELKSYRTRNRHFISRGDCCNILD 437
+++L I AY + +P+ L++ +D SRE SELK YR++NRHF+ R DC ++L+
Sbjct: 385 DSILQCIYDAYESEAEMVEIPESLRMSKDVRDSREASELKGYRSKNRHFVRREDCSSVLE 444
Query: 438 WIKRTQGKTCE 448
WI R++G E
Sbjct: 445 WI-RSEGCKSE 454
>sp|B5EGD5|MIAA1_GEOBB tRNA dimethylallyltransferase 1 OS=Geobacter bemidjiensis (strain
Bem / ATCC BAA-1014 / DSM 16622) GN=miaA1 PE=3 SV=1
Length = 306
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 184/347 (53%), Gaps = 53/347 (15%)
Query: 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPH 101
KK KVIV+ GPTG+GKS LA++LA+ + GEI++ADS+QVYR LDIG+AKPS++D VPH
Sbjct: 6 KKIKVIVLGGPTGSGKSDLAVKLAEEIGGEIVNADSMQVYRRLDIGTAKPSAADLARVPH 65
Query: 102 HLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASP 161
HLIDIL P ED++ F +A A D+ ++G+ IV GGTGLY+R +YG D P P
Sbjct: 66 HLIDILDPNEDFTASDFRREATAAIADIERRGKRAIVVGGTGLYIRALLYGLVDSPTGDP 125
Query: 162 EIIAEVNSELADLQRDGDWYAAVEFVVKAG--DPK-ARSLAANDWYRLRRSLEIIKSTGS 218
E L+R D E + + DP+ A L ND RL R+LE+ TG
Sbjct: 126 E-----------LRRQFDDVPGEELLRRLSLVDPETAARLHPNDRVRLIRALEVYTQTGR 174
Query: 219 PPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRS 278
P SAF+ ++H++ D+ Y + + R +LYR
Sbjct: 175 PVSAFR--------------SEHAF-------------SDVHYQVLKMAIRVERQELYRR 207
Query: 279 IDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTG 338
IDLR E ML DG++ E LL G + A R+IGY++ YL G +
Sbjct: 208 IDLRVEKML--EDGLVEEVRLLLAAG-YGHELKALRSIGYKEITAYL------AGEMTLD 258
Query: 339 EFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYII 385
E + ++ +R +AKRQ+TWF E +WL +L ++I
Sbjct: 259 EAVTLI---KRDTRRYAKRQMTWFGKENDIYWLEYPGSFATILGHVI 302
>sp|Q607R4|MIAA_METCA tRNA dimethylallyltransferase OS=Methylococcus capsulatus (strain
ATCC 33009 / NCIMB 11132 / Bath) GN=miaA PE=3 SV=1
Length = 312
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 174/340 (51%), Gaps = 43/340 (12%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
+++++ V+V+ GPT +GKSQLA+ELA L+GEI+S DS VYRG+DIG+AKP+ ++R
Sbjct: 1 MSAAELPPVVVLMGPTASGKSQLAIELANALDGEIVSVDSSLVYRGMDIGTAKPTPTERA 60
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
VPHHLID+L P E +S G+F ++A D+ +GR+P++ GGT LY + G ++P
Sbjct: 61 AVPHHLIDVLDPSEVFSTGRFRDEALALIADITARGRLPVLAGGTMLYFNALLRGLAELP 120
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTG 217
A P++ E+ + A RDG W+A + + P A + ND RL+R+LE+ TG
Sbjct: 121 SADPDLRREIETRAA---RDG-WHALHAELARIDPPAAARIHPNDPQRLQRALEVFYLTG 176
Query: 218 SPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLY 276
R SD E S E L + + L+ S R L
Sbjct: 177 -------------RTLSDLCEGSRSPE--------------LPFRPLRIVLAPSSRAVLA 209
Query: 277 RSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSS 336
I R ML +G L E L G L + + RA+GYRQA YL QG
Sbjct: 210 ERIAERFRRML--EEGFLEEVEALYRRGDLNETLPSIRAVGYRQAWGYL-----QGDYG- 261
Query: 337 TGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARP 376
F F+ A+R FAKRQ TW R E WL P
Sbjct: 262 ---FDTFVERAIIATRQFAKRQCTWLRKETEATWLETGTP 298
>sp|A1U4C6|MIAA_MARAV tRNA dimethylallyltransferase OS=Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8) GN=miaA PE=3 SV=1
Length = 347
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 178/337 (52%), Gaps = 29/337 (8%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
I + GPT +GK+ LA+EL + L EIIS DS VYRG+DIG+AKPS + PH LID
Sbjct: 15 TIFLMGPTASGKTDLAIELCRTLPCEIISVDSAMVYRGMDIGTAKPSPEELALAPHRLID 74
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 165
I P + YS F DA A ++ +GR+P++ GGT +Y + ++G ++P A+ + A
Sbjct: 75 ICDPADTYSAADFRRDALAAMSEISGRGRIPLLVGGTMMYFKALLHGMSNLPSANQALRA 134
Query: 166 EVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAF-Q 224
E+ E +RDG W A E + + AR + N+ RL R++E+I+ T P S+F Q
Sbjct: 135 EIERE---AERDG-WGALHEELAEKDPDAARLIHPNNRQRLMRAIEVIRLTDKPISSFWQ 190
Query: 225 IPYDSFREHSDSSETDHSY----ERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSI 279
+ +H S D++Y + + SAG L Y F L+ + R L+ I
Sbjct: 191 SESGTSGQHPQSGIEDYTYFTSWQADESAG--------LPYTVFQFALAPAERSVLHSRI 242
Query: 280 DLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGE 339
R ML G L E L+ G L + R +GYRQA +YL S +
Sbjct: 243 QKRFLAMLEA--GFLDEVRALMARGDLSPDLPSMRCVGYRQAWDYL---------SGNED 291
Query: 340 FYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARP 376
+ +F+A+ A+R AKRQLTW R R HWL++A P
Sbjct: 292 YDSFVAKGVAATRQLAKRQLTWLRKWRDVHWLDSADP 328
>sp|A5GEV6|MIAA2_GEOUR tRNA dimethylallyltransferase 2 OS=Geobacter uraniireducens (strain
Rf4) GN=miaA2 PE=3 SV=1
Length = 310
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 182/352 (51%), Gaps = 45/352 (12%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
V K K+I+I GPT +GK++LA+ LA+R +GEI++ADS+QVYRG+DIG+AKPS R+
Sbjct: 2 VDGEDKIKLIIIVGPTASGKTELAVRLAERFDGEIVNADSMQVYRGMDIGTAKPSPQLRQ 61
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
VPHHL+DI+ P ++S F +A A D+ +G+ V GGTGLY+R + G D P
Sbjct: 62 RVPHHLVDIVTPDVNFSAADFRREAAAAIDDIHSRGKSVFVVGGTGLYIRALLQGLVDSP 121
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKST 216
I E+ ELA + + + V DP+ A L ND R+ R+LE+ + T
Sbjct: 122 SGDESIRREL-VELAQTVGNEELLRRLALV----DPETAERLHPNDRLRIIRALEVYRQT 176
Query: 217 GSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLY 276
G P S F+ S G +DT YD + L R +LY
Sbjct: 177 GRPISTFR----------------------SEHGFADTY-----YDCLKIGLRVERQELY 209
Query: 277 RSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSS 336
R ++ R E M+ G+++E LL G P+ S R+IGY++ YL G +
Sbjct: 210 RRVESRVEVMI--EQGLIAEVEGLLRAGYTPDLKS-MRSIGYKEICAYL------AGECT 260
Query: 337 TGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAY 388
E + ++ +R++AKRQ+TWF + +W+ + N++I +
Sbjct: 261 LDEAVQLI---KRDTRHYAKRQMTWFNKDFEINWVEYPESFATICNHVIEFF 309
>sp|Q39TZ3|MIAA_GEOMG tRNA dimethylallyltransferase OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=miaA PE=3 SV=1
Length = 309
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 183/349 (52%), Gaps = 45/349 (12%)
Query: 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPH 101
+K +++++ GPT +GKS LALELA+R+ GEI++ADS+QVYRG+DIG+AKPS +R+ VPH
Sbjct: 5 EKTRLVIVQGPTASGKSALALELAERIGGEIVNADSMQVYRGMDIGTAKPSQEERRRVPH 64
Query: 102 HLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASP 161
HL DI+ P +++ F E A A D+ ++G+ I+ GGTGLY+R G ASP
Sbjct: 65 HLYDIVDPKVNFTAADFREHASRAIADIERRGKRVILVGGTGLYIRILTQGLV----ASP 120
Query: 162 EIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARS-LAANDWYRLRRSLEIIKSTGSPP 220
+ EL D Q G+ ++ + A DP A + L ND R+ R+LE+ TG P
Sbjct: 121 GGDDNIRRELED-QAHGEGLESLHRRLAAVDPVAAARLHPNDGVRIVRALEVFLLTGRPL 179
Query: 221 SAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280
SAFQ H + D Y + ++ R LYR ++
Sbjct: 180 SAFQ--------------EAHRF-------------ADEPYRCLKLGITVERELLYRRVE 212
Query: 281 LRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEF 340
R + M+ ++G++ E LL G P + A +IGYR+ C G S E
Sbjct: 213 ERVDRMI--AEGLVEEVRGLLSAGY-PATLKAMGSIGYREI------CAHLAGEFSLDEA 263
Query: 341 YAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYH 389
+ ++ +R +AKRQ+TWFR + W+ +++L+ ++ YH
Sbjct: 264 MRLI---KQNTRQYAKRQMTWFRRDSEIIWVEYPGKFDSILSTVMGFYH 309
>sp|Q820E1|MIAA_CHLCV tRNA dimethylallyltransferase OS=Chlamydophila caviae (strain GPIC)
GN=miaA PE=3 SV=1
Length = 342
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 178/335 (53%), Gaps = 39/335 (11%)
Query: 37 SVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDR 96
S A+ K VI++SGPTG+GK+ ++L LA ++GEIIS DS+QVYRG+DIG+AK S DR
Sbjct: 25 SFANLFKRTVILLSGPTGSGKTDVSLRLASMVDGEIISVDSMQVYRGMDIGTAKVSLEDR 84
Query: 97 KEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDV 156
+ +PH+LIDI H E ++ F+ A HA +++L + +VPI+ GG+G Y F+ G P
Sbjct: 85 QRIPHYLIDICHVQELFNAVDFYYQAMHACQNILSRNKVPILVGGSGFYFHTFLSGPPGG 144
Query: 157 PKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKST 216
P A E +LA +D E + + AR++ ND ++ R+LEII T
Sbjct: 145 PPAD----REFRDQLALYIQDHGLSFLYENLCQKDPEYARTITKNDKNKIVRALEIIHLT 200
Query: 217 GSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLY 276
G S EHS S E S E N +FLS + L
Sbjct: 201 GRKVS----------EHSWSMEPQESREYNCRG----------------WFLSPPKELLL 234
Query: 277 RSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSS 336
+I LRC+ ML D ++ E LL++G+ NS SA++AIGYR+ +E++ QG
Sbjct: 235 DNIQLRCQKML--EDNLIGEVRGLLEQGIRENS-SASKAIGYREWIEFI----DQGSPEE 287
Query: 337 TGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWL 371
E A +F + + K+Q TWF+ ++ L
Sbjct: 288 AYE--AVKQKFITNTCQYTKKQRTWFKRYPVFREL 320
>sp|A1AT90|MIAA1_PELPD tRNA dimethylallyltransferase 1 OS=Pelobacter propionicus (strain
DSM 2379) GN=miaA1 PE=3 SV=1
Length = 309
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 178/344 (51%), Gaps = 43/344 (12%)
Query: 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLI 104
++++I GPT +GKS+LA+ LA+ L+GEI++ADS+Q++RG+DIG+AKP+ + VPHHL+
Sbjct: 8 RILIICGPTASGKSELAVRLARELDGEIVNADSMQIHRGMDIGTAKPTVGEMGAVPHHLL 67
Query: 105 DILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEII 164
D+ P +S F + A A ++++G+ PIV GGTGLYLR ++G D P + E+
Sbjct: 68 DVADPDRPFSAADFSDAASQAISGIIRRGKRPIVVGGTGLYLRALLHGLVDSPSGAGELR 127
Query: 165 AEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQ 224
+ E +L A +E + + A ++ N+ R+ R LE+ TG P S +Q
Sbjct: 128 RRLQEEARELGNQ----AMLERLRRVDPQLATTIHPNNLVRIIRGLEVYHLTGIPLSRYQ 183
Query: 225 IPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCE 284
EH ++E Y + + R +LY I+ R +
Sbjct: 184 ------HEHGFAAER---------------------YRSLAIGIRVERRELYERIERRVD 216
Query: 285 DMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFL 344
ML + G+L E LL+ G P A R+IGYR++ ++L G SS E A +
Sbjct: 217 RML--ATGLLDEVRALLEAGFGPELK-AMRSIGYRESCDFL------AGNSSLEETTALI 267
Query: 345 AEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAY 388
++ +R +AKRQLTWF + WL +L + I +
Sbjct: 268 ---KRNTRRYAKRQLTWFNADPEIIWLEYPEKFATILRHCIAFF 308
>sp|A5D2K7|MIAA_PELTS tRNA dimethylallyltransferase OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=miaA PE=3 SV=1
Length = 314
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 176/337 (52%), Gaps = 52/337 (15%)
Query: 39 ASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKE 98
+ +KKE ++VI+GPT GKS++ + +A++L GEIISADS+ +YRG+DIG+AKP+S+DR+
Sbjct: 3 SENKKEPLLVITGPTATGKSEVGVLVAEKLGGEIISADSMLIYRGMDIGTAKPTSADRRG 62
Query: 99 VPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFI----YGKP 154
+PHH+IDI+ P +DY+V + + A K VL++G +PIV GGTGLY+ I +G
Sbjct: 63 IPHHMIDIVEPDQDYNVALYRKQAMAVIKKVLERGNLPIVVGGTGLYIEALIRNYSFGGA 122
Query: 155 DVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIK 214
K + ++ E A+ + + + K A L + R+ R+LE+
Sbjct: 123 GTDKT---LRKKLQKEAAE-----SPFLLHQRLAKIDPATASQLHPANTRRVIRALEVYY 174
Query: 215 STGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLD 274
TG P S F+ + D ++ + F L+ R
Sbjct: 175 LTGKPISNFK----------------------------RLDEPDPPFNLLMFGLTMEREA 206
Query: 275 LYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGT 334
LYR I+ R + M+ + G++ E LL G P NS R +GY++ + YL GT
Sbjct: 207 LYRRIEKRVDRMI--AMGLIEEVQNLLQRGFSPRLNS-MRGLGYKEMISYL------NGT 257
Query: 335 SSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWL 371
S E L ++ +R FAKRQ+TWFR + WL
Sbjct: 258 LSLEEAVEVL---KRNTRRFAKRQMTWFRRYKEIRWL 291
>sp|Q3ACA8|MIAA_CARHZ tRNA dimethylallyltransferase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=miaA PE=3 SV=1
Length = 311
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 188/345 (54%), Gaps = 46/345 (13%)
Query: 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHL 103
EK+I+I GPT GKS L +++AK++NGEIIS DS+QVY+ +DIG+AK +R+ VPHHL
Sbjct: 3 EKLIIIVGPTAVGKSALGIKVAKKINGEIISGDSMQVYKYMDIGTAKVLPEEREGVPHHL 62
Query: 104 IDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEI 163
IDIL P + YSV F ++AR K++ ++G++PI+ GGTGLY+R I D S +
Sbjct: 63 IDILEPFQKYSVALFQKEARRLIKEINERGKIPIIVGGTGLYIRSVI-DPYDFTDFSFDP 121
Query: 164 IAEVNSELADLQRDGDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPPSA 222
+ E A ++ + + +++ DP A+ + +ND R+ R+LE+ + TG P S
Sbjct: 122 VFRGKLEQAAKEKGSSY---LHQMLEKIDPVAAQKIHSNDLRRIIRALEVYEHTGKPISY 178
Query: 223 FQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLR 282
+ +ER + P+ Y + + L+ R LY+ I+ R
Sbjct: 179 Y-------------------WER-----GKQSKPQ---YRLLYYGLTMDRALLYQRINER 211
Query: 283 CEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYA 342
+ M+ G+++E LL G ++A +A+GY++ ++YL +G + Y
Sbjct: 212 VDKMI--EKGLIAEVKRLLQMGF--KESTAMQALGYKEIVQYL-----EGKITLDEAIYL 262
Query: 343 FLAEFQKASRNFAKRQLTWFRNERIYHWLNAARP-LENVLNYIIT 386
++ +R FAKRQLTWFR + W ++ + LE + IIT
Sbjct: 263 I----KRDTRRFAKRQLTWFRRDPRIKWFDSGKESLEKITEKIIT 303
>sp|C1FNT7|MIAA_CLOBJ tRNA dimethylallyltransferase OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=miaA PE=3 SV=1
Length = 311
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/348 (33%), Positives = 181/348 (52%), Gaps = 44/348 (12%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
+++I+GPT GK+ +++ELA++LNGEIISADS+Q+Y+ +DIGSAK + + K +PHHLID
Sbjct: 4 LLIIAGPTAVGKTDISIELAEKLNGEIISADSMQIYKYMDIGSAKITKDEMKGIPHHLID 63
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 165
++ P E+++V F A + KD+ KG++PI+ GGTGLY+ IY E
Sbjct: 64 VVEPHEEFNVSSFKALAEKSIKDIWNKGKLPIIVGGTGLYINSLIYNYDFTDADRDEKYR 123
Query: 166 EVNSELADLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQ 224
E ++LA + G Y V ++K D ++ L ND R+ R+LE+ K TG S +
Sbjct: 124 EYLTKLA--EDKGKEY--VHSLLKDIDEESYEKLYPNDLKRVVRALEVYKITGKSISEY- 178
Query: 225 IPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCE 284
++ D+ Y+ F L+ +R LY I+ R +
Sbjct: 179 ------------------------TKENEKKLYDIPYNVNYFILNMNREVLYERINKRVD 214
Query: 285 DMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFL 344
M+ S G++ E L G P+ S + IGY++ + YL G S Y
Sbjct: 215 IMM--SKGLIEEVKKLESMGYTPDMQS-MKGIGYKEVLFYL-----NGDISLDEAIYL-- 264
Query: 345 AEFQKASRNFAKRQLTWFRNERIYHWLNAAR--PLENVLNYIITAYHD 390
+K SRN+AKRQLTWFR ++ W++ + E +++ II D
Sbjct: 265 --IKKGSRNYAKRQLTWFRKDKRSIWIDKDKYSSEEEIVDKIIKMVKD 310
>sp|A0Q0M8|MIAA_CLONN tRNA dimethylallyltransferase OS=Clostridium novyi (strain NT)
GN=miaA PE=3 SV=1
Length = 314
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 172/330 (52%), Gaps = 42/330 (12%)
Query: 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHH 102
K+ + +++GPT GK+ ++++LA++LNGEIISADS+Q+Y+ +DIGSAK + ++++ +PHH
Sbjct: 2 KQDLFILAGPTAVGKTDISIKLAQKLNGEIISADSMQIYKHMDIGSAKITEAEKEGIPHH 61
Query: 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPE 162
LID + P +++SV +F E +++A KD+ +G++P++ GGTG Y+ I+ E
Sbjct: 62 LIDFVSPFDEFSVAEFKEKSKNAIKDIASRGKLPMIVGGTGFYIDSLIFNYDFANTYKDE 121
Query: 163 IIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSA 222
E L +L + E + + + L ND R+ R+LE+ K TG S
Sbjct: 122 ---EYREHLKNLASEHGKEYVHELLKDIDEVSYKKLYPNDLKRVIRALEVFKLTGKTISE 178
Query: 223 FQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLR 282
F D F D+ Y+ F L+ R LY I+ R
Sbjct: 179 FNKEQDIF---------------------------DIPYNVYYFVLNMDRSKLYERINKR 211
Query: 283 CEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYA 342
+ M+ G++ E L + G P+ S + IGY++ + YL G S E
Sbjct: 212 VDIMM--EKGLIEEVKSLQNMGCTPDMQS-MKGIGYKEILYYL------DGKLSLDEAVE 262
Query: 343 FLAEFQKASRNFAKRQLTWFRNERIYHWLN 372
+ +K SR++AKRQLTWFR + +W++
Sbjct: 263 LI---KKGSRHYAKRQLTWFRKDNRVNWID 289
>sp|Q9Z6Z6|MIAA_CHLPN tRNA dimethylallyltransferase OS=Chlamydia pneumoniae GN=miaA PE=3
SV=1
Length = 342
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 175/330 (53%), Gaps = 41/330 (12%)
Query: 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHH 102
K ++++SGPTG+GK+ ++L LA ++GEI+S DS+QVY+G+DIG+AK S R+E+PHH
Sbjct: 31 KRTIVLLSGPTGSGKTDVSLALAPMIDGEIVSVDSMQVYQGMDIGTAKVSLKARQEIPHH 90
Query: 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPE 162
LIDI H E ++V F+ +A A +++L + +VPI+ GG+G Y F+ G P P A P+
Sbjct: 91 LIDIRHVQEPFNVVDFYYEAIQACQNILSRNKVPILVGGSGFYFHAFLSGPPKGPAADPQ 150
Query: 163 IIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSA 222
I +L + + A E ++ A+++ ND ++ R LEII+ TG S
Sbjct: 151 I----REQLEAIAEEHGVSALYEDLLLKDPEYAQTITKNDKNKIIRGLEIIQLTGKKVS- 205
Query: 223 FQIPYDSFREHSDSSETDHSYERNSSAGASDTNPK-DLDYDFMCFFLSSHRLDLYRSIDL 281
DH + D PK +Y +FLS L +I +
Sbjct: 206 -----------------DHEW---------DIVPKASREYCCRAWFLSPETEFLKNNIQM 239
Query: 282 RCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFY 341
RCE ML +G+L E LL++G+ N SA +AIGYR+ +E+L E+
Sbjct: 240 RCEAML--QEGLLEEVRGLLNQGIRENP-SAFKAIGYREWIEFL------DNGEKLEEYE 290
Query: 342 AFLAEFQKASRNFAKRQLTWFRNERIYHWL 371
+F S ++ K+Q TWF+ I+ L
Sbjct: 291 ETKRKFVSNSWHYTKKQKTWFKRYSIFREL 320
>sp|A7GR71|MIAA_BACCN tRNA dimethylallyltransferase OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=miaA PE=3 SV=1
Length = 316
Score = 175 bits (444), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 182/353 (51%), Gaps = 54/353 (15%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
+ ++EKV+VI GPT GK++L++ELAK LNGEI+S DS+Q+YR +DIG+AK ++ + +
Sbjct: 1 MEEKQREKVVVIIGPTAVGKTKLSIELAKALNGEIVSGDSMQIYRTMDIGTAKVTADEME 60
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
+PH++IDI P + +SV +F E R +++ K+G++PI+ GGTGLY++ +Y
Sbjct: 61 GIPHYMIDIKDPEDSFSVAEFQELVRGHIREITKRGKLPIIVGGTGLYIQSVLYDYQFTD 120
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFV---VKAGDPK-ARSLAANDWYRLRRSLEII 213
+A E +LA+ Q VEFV ++ DP+ A+ + AN+ R+ R+LEI
Sbjct: 121 EAGDTAYRERMEKLAEEQ-------GVEFVHKKLEEVDPESAKRIHANNVRRVIRALEIF 173
Query: 214 KSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRL 273
++TG S + +L YD + L+ R
Sbjct: 174 QTTGKKMSE----------------------------QLEKQKNELLYDVVLIGLTMDRT 205
Query: 274 DLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGG 333
LY I+LR + M+ G+ E L G+ + +AIGY++ Y G
Sbjct: 206 MLYDRINLRVDLMM--EQGLEQEVKRLYQNGV--RDCQSIQAIGYKELYRYF------AG 255
Query: 334 TSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNA--ARPLENVLNYI 384
+S E +++ + SR +AKRQLTWFRN+ W + +L YI
Sbjct: 256 ATSLEEA---ISQLKTNSRRYAKRQLTWFRNKMDVAWFDVTDGEKTAEILRYI 305
>sp|Q87F70|MIAA_XYLFT tRNA dimethylallyltransferase OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=miaA PE=3 SV=1
Length = 317
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 170/340 (50%), Gaps = 50/340 (14%)
Query: 40 SSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEV 99
+ + IV+ GPT +GKSQLA+++AKR GE+IS DSV VYRGLDIG+AKP+++ R V
Sbjct: 3 ADTRPAAIVLMGPTASGKSQLAIDIAKRWGGEVISVDSVLVYRGLDIGTAKPNAAMRASV 62
Query: 100 PHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKA 159
PHHLIDI P E YS F DAR A ++++G +PI+TGGTGLY R + G D+P A
Sbjct: 63 PHHLIDICEPWETYSAADFAHDARAAIDMIVRRGALPILTGGTGLYFRALLAGLSDMPPA 122
Query: 160 SPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSP 219
PEI A + +E +RD W A + + A + A D R++R+LE+ +G
Sbjct: 123 HPEIRAMIAAE---AKRDS-WAALHTRLAEVDAITAARIHATDPQRIQRALEVYLVSGQS 178
Query: 220 PSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKD-LDYDFMCFFLS-SHRLDLYR 277
S +Q + PK L + L+ +HR L+
Sbjct: 179 MSDWQ----------------------------NQPPKQRLPLRVLKLVLAPTHRKVLHF 210
Query: 278 SIDLRCEDMLPGSDGILSEAAWL-----LDEGLLPNSNSATRAIGYRQAMEYLLRCRQQG 332
I R + ML +G+L+E L + P A RA+GYRQ E+L
Sbjct: 211 RIAQRFKAML--DNGLLAEVNALRTHPSIHAMARPLDLPAMRAVGYRQCWEHL------D 262
Query: 333 GTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLN 372
G + Y A+R AKRQLTW R E W +
Sbjct: 263 GMYTAEMLY---QRSVAATRQLAKRQLTWLRGELDALWFD 299
>sp|B2I692|MIAA_XYLF2 tRNA dimethylallyltransferase OS=Xylella fastidiosa (strain M23)
GN=miaA PE=3 SV=1
Length = 317
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 170/340 (50%), Gaps = 50/340 (14%)
Query: 40 SSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEV 99
+ + IV+ GPT +GKSQLA+++AKR GE+IS DSV VYRGLDIG+AKP+++ R V
Sbjct: 3 ADTRPAAIVLMGPTASGKSQLAIDIAKRWGGEVISVDSVLVYRGLDIGTAKPNAAMRASV 62
Query: 100 PHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKA 159
PHHLIDI P E YS F DAR A ++++G +PI+TGGTGLY R + G D+P A
Sbjct: 63 PHHLIDICEPWETYSAADFAHDARAAIDMIVRRGALPILTGGTGLYFRALLAGLSDMPPA 122
Query: 160 SPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSP 219
PEI A + +E +RD W A + + A + A D R++R+LE+ +G
Sbjct: 123 HPEIRAMIAAE---AKRDS-WAALHTRLAEVDAITAARIHATDPQRIQRALEVYLVSGQS 178
Query: 220 PSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKD-LDYDFMCFFLS-SHRLDLYR 277
S +Q + PK L + L+ +HR L+
Sbjct: 179 MSDWQ----------------------------NQPPKQRLPLRVLKLVLAPTHRKVLHF 210
Query: 278 SIDLRCEDMLPGSDGILSEAAWL-----LDEGLLPNSNSATRAIGYRQAMEYLLRCRQQG 332
I R + ML +G+L+E L + P A RA+GYRQ E+L
Sbjct: 211 RIAQRFKAML--DNGLLAEVNALRTHPSIHAMARPLDLPAMRAVGYRQCWEHL------D 262
Query: 333 GTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLN 372
G + Y A+R AKRQLTW R E W +
Sbjct: 263 GMYTAEMLY---QRSVAATRQLAKRQLTWLRGELDALWFD 299
>sp|Q74BP1|MIAA_GEOSL tRNA dimethylallyltransferase OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=miaA PE=3 SV=1
Length = 311
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 172/333 (51%), Gaps = 45/333 (13%)
Query: 40 SSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEV 99
+ K K+++I GPT +GKS+LA+ LA+ G++++ADS+QVYRG+DIG+AKPS V
Sbjct: 5 AGSKTKLVIIQGPTASGKSELAVRLAEACGGDVVNADSMQVYRGMDIGTAKPSPELVARV 64
Query: 100 PHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKA 159
PHHL DI+ P +++ + +A ++ +G+ PI+ GGTGLY++ I G P A
Sbjct: 65 PHHLYDIVDPDVNFTAADYRREAGRVITEIHSRGKRPILVGGTGLYIKTLIGGLAPSPGA 124
Query: 160 SPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARS-LAANDWYRLRRSLEIIKSTGS 218
I AE+ D + +G AA+ + DP A + L ND R+ R+LE+ TG
Sbjct: 125 DDTIRAELEE---DARSEG--AAALHDRLAQVDPAAAARLHPNDRVRIVRALEVFLMTGK 179
Query: 219 PPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRS 278
P S FQ EH + E YD + +S R DLYR
Sbjct: 180 PLSEFQ------EEHRFADEP---------------------YDCLKLGISVERDDLYRR 212
Query: 279 IDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTG 338
I+ R M ++G + E + LL+ G P+ A AIGY++ YL GT S
Sbjct: 213 INERVNRMF--AEGFVEEVSGLLNAGYSPDLK-AMGAIGYKEVCAYL------AGTCSLD 263
Query: 339 EFYAFLAEFQKASRNFAKRQLTWFRNERIYHWL 371
E + Q+ +R +AKRQLTWFR + W+
Sbjct: 264 EARELV---QRNTRRYAKRQLTWFRKDPAIKWV 293
>sp|B9M3M9|MIAA2_GEOSF tRNA dimethylallyltransferase 2 OS=Geobacter sp. (strain FRC-32)
GN=miaA2 PE=3 SV=1
Length = 326
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 178/351 (50%), Gaps = 43/351 (12%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
+ S +K K++ I GPT +GK++LA+ LA+R +GEI++ADS+QVYRG+DIG+AKPS S R
Sbjct: 1 MKSEEKIKLVSIVGPTASGKTELAVRLAERFDGEIVNADSMQVYRGMDIGTAKPSVSLRS 60
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
V HHLIDI+ P ++S F A A D+ +G+ + GGTGLY+R + G D P
Sbjct: 61 RVTHHLIDIVTPDVNFSASDFRRAADGAIADIHSRGKRVFIVGGTGLYIRALLQGLVDSP 120
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTG 217
+I E+N ++ +G ++ + + A L ND R+ R+LE+ + TG
Sbjct: 121 SGDEQIRGELNELAKEIGNEG----LLQLLAEVDPITAERLHHNDRVRIIRALEVYRQTG 176
Query: 218 SPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYR 277
P S F+ +EH + E YD + ++ R +LY
Sbjct: 177 RPMSQFR------QEHGFAEEM---------------------YDCLMLGINVERQELYS 209
Query: 278 SIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSST 337
++ R ++M+ G+ +E L G + A R+IGY++ +L G S
Sbjct: 210 RVEKRVDEMV--ESGLAAEVEELFRLGYARDLK-AMRSIGYKEICSFL------SGEISL 260
Query: 338 GEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAY 388
+ + ++ +R +AKRQ+TWF E W+ N+ N++I +
Sbjct: 261 DQAVQLI---KRDTRRYAKRQMTWFNKEYGIKWVEYPAAFANICNHVIEFF 308
>sp|Q9PH56|MIAA_XYLFA tRNA dimethylallyltransferase OS=Xylella fastidiosa (strain 9a5c)
GN=miaA PE=3 SV=1
Length = 317
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 170/342 (49%), Gaps = 54/342 (15%)
Query: 40 SSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEV 99
+ + IV+ GPT +GKSQLA+++AKR GE+IS DSV VYRGLDIG+AKP+++ R V
Sbjct: 3 ADTRPAAIVLMGPTASGKSQLAIDIAKRWGGEVISVDSVLVYRGLDIGTAKPNAAMRASV 62
Query: 100 PHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKA 159
PHHLIDI P E YS F DAR A ++++G +PI+TGGTGLY R + G D+P A
Sbjct: 63 PHHLIDICEPWETYSAADFAHDARAAIDMIVRRGALPILTGGTGLYFRALLAGLSDMPPA 122
Query: 160 SPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSP 219
PEI A + +E +RD W + + A + A D R++R+LE+ + +G
Sbjct: 123 HPEIRAMITAE---AKRDS-WATLHTRLAEVDAITAARIHATDPQRIQRALEVYRVSGRS 178
Query: 220 PSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRS 278
S +Q + L + L+ +HR L+
Sbjct: 179 MSDWQ---------------------------KQPLKQRLPLRVLKLVLAPTHRKVLHFR 211
Query: 279 IDLRCEDMLPGSDGILSEAAWL-----LDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGG 333
I R + ML +G+L+E L + P + A RA+GYRQ E+L
Sbjct: 212 IAQRFKAML--DNGLLAEVNALRTHPSIHAMARPLNLPAMRAVGYRQCWEHL-------- 261
Query: 334 TSSTGEFYAFLAEFQK---ASRNFAKRQLTWFRNERIYHWLN 372
Y +Q+ A+R AKRQLTW R E W +
Sbjct: 262 ----DNMYTAETLYQRGVAATRQLAKRQLTWLRGELDALWFD 299
>sp|Q5L530|MIAA_CHLAB tRNA dimethylallyltransferase OS=Chlamydophila abortus (strain
S26/3) GN=miaA PE=3 SV=2
Length = 342
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 184/337 (54%), Gaps = 43/337 (12%)
Query: 37 SVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDR 96
S A K VI+++GPTG+GK+ ++L LA ++GEIIS DS+QVYRG+DIG+AK S DR
Sbjct: 25 SFAKLFKRTVILLAGPTGSGKTDVSLRLAPMIDGEIISVDSMQVYRGMDIGTAKVSWEDR 84
Query: 97 KEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDV 156
+ +PH+LIDI H E ++ F+ A A +++L + +VPI+ GGTG Y F+ G P
Sbjct: 85 QRIPHYLIDICHVQELFNAVDFYYQAIQACQNILSRNKVPILVGGTGFYFHTFLSGPPQG 144
Query: 157 PKASPEIIAEVNSELA-DLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIK 214
P SP+ + +LA +Q G +K DP+ AR++ ND ++ R+LEII
Sbjct: 145 P--SPD--CDFRDKLALYIQEHGLSLLYENLCLK--DPEYARTITKNDRNKIVRALEIIH 198
Query: 215 STGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLD 274
TG S DH + + +S +Y+ +FLS +
Sbjct: 199 LTGKKVS------------------DHKWTKEASECQ--------EYNCRGWFLSPPKEL 232
Query: 275 LYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGT 334
L +I LRC+ ML D ++ E LL +G+ NS SA+RAIGYR+ +E++ QG
Sbjct: 233 LRDTIHLRCQRML--EDDLIDEVHRLLKQGIRDNS-SASRAIGYREWIEFI----DQGSP 285
Query: 335 SSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWL 371
+ + E A +F + ++ K+Q TWF+ I+ L
Sbjct: 286 AESYE--AVKQKFITNTCHYTKKQRTWFKRYPIFREL 320
>sp|Q24X66|MIAA_DESHY tRNA dimethylallyltransferase OS=Desulfitobacterium hafniense
(strain Y51) GN=miaA PE=3 SV=1
Length = 314
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 174/348 (50%), Gaps = 56/348 (16%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
+I+I GPT GK+ L + LA+ L GEIIS DSVQVYR LDIGSAKP+ +++ +PH+L+D
Sbjct: 4 LIIIVGPTAVGKTALGVALAQALQGEIISGDSVQVYRKLDIGSAKPTLAEQGNIPHYLLD 63
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 165
L P E ++V +F A A +D+ +G+VPIV GGTGLY+R I P A
Sbjct: 64 ALEPAEPFTVAQFQTLANQAIQDIQSRGKVPIVVGGTGLYIRSLI---------DPFQFA 114
Query: 166 EVNSE------LADLQRDGDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGS 218
E SE A L G E + DP A+ L ND R+ R+LE+ + TG
Sbjct: 115 EHGSESIRSFWTAFLSEQGKEALHQELAKR--DPLSAQRLHPNDTVRIIRALEMCQLTGK 172
Query: 219 PPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRS 278
P F E + G D N L + L++ R +Y
Sbjct: 173 P----------FSE---------------TRGNQDLNYPPLPPSTLYVGLTAPREIIYER 207
Query: 279 IDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTG 338
I+ RCE M+ + G++ E L+ EG P ++IGYR A+ YL G +
Sbjct: 208 INRRCEQMV--AAGLIEETHNLIKEGYSPKLKP-LQSIGYRHALLYLY------GKVTLP 258
Query: 339 EFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNA-ARPLENVLNYII 385
E FQ+ +R+FAKRQLTWFR + W + + L N+L +I
Sbjct: 259 EMMRI---FQRDTRHFAKRQLTWFRRDPRVVWYDTYSGNLTNILESLI 303
>sp|B1KSA1|MIAA_CLOBM tRNA dimethylallyltransferase OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=miaA PE=3 SV=1
Length = 311
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 182/348 (52%), Gaps = 44/348 (12%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
+++I+GPT GK+ +++ELA++LNGEIISADS+Q+Y+ +DIGSAK + + K +PHHLID
Sbjct: 4 LLIIAGPTAVGKTDISIELAEKLNGEIISADSMQIYKYMDIGSAKITKDEMKGIPHHLID 63
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 165
++ P E+++V F A + KD+ +G++PI+ GGTGLY+ IY E
Sbjct: 64 VVKPHEEFNVSSFKVLAEKSIKDIWNRGKLPIIAGGTGLYINSLIYNYDFTDADRDEKYR 123
Query: 166 EVNSELADLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQ 224
E ++LA + G Y V ++K D K+ L ND R+ R+LE+ K TG
Sbjct: 124 EYLTKLA--EDKGKEY--VHSLLKDIDEKSYEKLYPNDLKRVVRALEVYKITGK------ 173
Query: 225 IPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCE 284
S E++ +E D+ Y+ F L+ +R LY I+ R +
Sbjct: 174 ----SISEYTKENE---------------KKLYDIPYNVNYFVLNMNREVLYERINKRVD 214
Query: 285 DMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFL 344
M+ G++ E L G P+ S + IGY++ + YL G S Y
Sbjct: 215 IMM--GKGLIEEVKKLESMGYTPDMQS-MKGIGYKEVLFYL-----NGDISLDEAIYL-- 264
Query: 345 AEFQKASRNFAKRQLTWFRNERIYHWLNAAR--PLENVLNYIITAYHD 390
+K SRN+AKRQLTWFR ++ W++ + E +++ II D
Sbjct: 265 --IKKGSRNYAKRQLTWFRKDKRSIWIDKDKYSSEEEIVDEIIKMVKD 310
>sp|B0U1E8|MIAA_XYLFM tRNA dimethylallyltransferase OS=Xylella fastidiosa (strain M12)
GN=miaA PE=3 SV=1
Length = 317
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 169/340 (49%), Gaps = 50/340 (14%)
Query: 40 SSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEV 99
+ + IV+ GPT +GKSQLA+++AKR GE+IS DSV VYRGLDIG+AKP+++ R V
Sbjct: 3 ADTRPAAIVLMGPTASGKSQLAIDIAKRWGGEVISVDSVLVYRGLDIGTAKPNAAMRASV 62
Query: 100 PHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKA 159
PHHLIDI P E YS F DAR A ++++G +PI+TGGTGLY R + G D+P A
Sbjct: 63 PHHLIDICEPWETYSAADFAHDARAAIDMIVRRGALPILTGGTGLYFRALLAGLSDMPPA 122
Query: 160 SPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSP 219
PEI A + +E +RD W + + A + A D R++R+LE+ +G
Sbjct: 123 HPEIRAMIAAE---AKRDS-WATLHTRLAEVDAITAARIHATDPQRIQRALEVYLVSGRS 178
Query: 220 PSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKD-LDYDFMCFFLS-SHRLDLYR 277
S +Q + PK L + L+ +HR L+
Sbjct: 179 MSDWQ----------------------------NQPPKQRLPLRVLKLVLAPTHRKVLHF 210
Query: 278 SIDLRCEDMLPGSDGILSEAAWL-----LDEGLLPNSNSATRAIGYRQAMEYLLRCRQQG 332
I R + ML +G+L+E L + P A RA+GYRQ E+L
Sbjct: 211 RIAQRFKAML--DNGLLAEVNALRTHPSIHAMARPLDLPAMRAVGYRQCWEHL------D 262
Query: 333 GTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLN 372
G + Y A+R AKRQLTW R E W +
Sbjct: 263 GMYTAEMLY---QRSVAATRQLAKRQLTWLRGELDALWFD 299
>sp|B1IM66|MIAA_CLOBK tRNA dimethylallyltransferase OS=Clostridium botulinum (strain Okra
/ Type B1) GN=miaA PE=3 SV=1
Length = 311
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 182/348 (52%), Gaps = 44/348 (12%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
+++I+GPT GK+ ++++LA++LNGEIISADS+Q+Y+ +DIGSAK + + K +PHHLID
Sbjct: 4 LLIIAGPTAVGKTDISIKLAEKLNGEIISADSMQIYKYMDIGSAKITKDEMKGIPHHLID 63
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 165
++ P E+++V F + A + KD+ +G++PI+ GGTGLY+ IY E
Sbjct: 64 VVEPHEEFNVSSFKDLAEKSIKDIWNRGKLPIIAGGTGLYINSLIYNYDFTDADRDEKYR 123
Query: 166 EVNSELADLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQ 224
E ++LA + G+ Y V ++K D ++ L ND R+ R+LE+ K TG S +
Sbjct: 124 EYLTKLA--EDKGNEY--VHSLLKDIDEESYEKLYPNDLKRVVRALEVYKITGKSISEY- 178
Query: 225 IPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCE 284
++ D+ Y+ F L+ +R LY I+ R +
Sbjct: 179 ------------------------IKENEKKLYDIPYNVNYFILNMNREVLYERINKRVD 214
Query: 285 DMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFL 344
M+ G++ E L G P+ S + IGY++ + YL G S Y
Sbjct: 215 IMM--GKGLIEEVKKLESMGYTPDMQS-MKGIGYKEVLFYL-----NGDISLDEAIYLI- 265
Query: 345 AEFQKASRNFAKRQLTWFRNERIYHWLNAAR--PLENVLNYIITAYHD 390
+K SRN+AKRQLTWFR ++ W++ + E +++ II D
Sbjct: 266 ---KKGSRNYAKRQLTWFRKDKRSIWIDKDKYSSEEEIVDKIIKMVKD 310
>sp|A5I2S0|MIAA_CLOBH tRNA dimethylallyltransferase OS=Clostridium botulinum (strain Hall
/ ATCC 3502 / NCTC 13319 / Type A) GN=miaA PE=3 SV=1
Length = 311
Score = 173 bits (438), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/348 (33%), Positives = 182/348 (52%), Gaps = 44/348 (12%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
+++I+GPT GK+ ++++LA++LNGEIISADS+Q+Y+ +DIGSAK + + K +PHHLID
Sbjct: 4 LLIIAGPTAVGKTDISIKLAEKLNGEIISADSMQIYKYMDIGSAKITKDEMKGIPHHLID 63
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 165
++ P E+++V F A + KD+ +G++PI+ GGTGLY+ IY E
Sbjct: 64 VVEPHEEFNVSSFKALAEKSIKDIWNRGKLPIIAGGTGLYINSLIYNYDFTDADRDEKYR 123
Query: 166 EVNSELADLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQ 224
E ++LA + G Y V ++K D ++ L ND R+ R+LE+ K TG
Sbjct: 124 EYLTKLA--EDKGKEY--VHSLLKDIDKESYEKLYPNDLKRVVRALEVYKITGK------ 173
Query: 225 IPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCE 284
S E++ +E D+ Y+ F L+ +R LY I+ R +
Sbjct: 174 ----SISEYTKENE---------------KKLYDIPYNVNYFILNMNREVLYERINKRVD 214
Query: 285 DMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFL 344
M+ G++ E L G P+ S + IGY++ + YL G S Y
Sbjct: 215 IMM--GKGLIEEVKKLESMGYTPDMQS-MKGIGYKEVLFYL-----NGDISLDEAIYL-- 264
Query: 345 AEFQKASRNFAKRQLTWFRNERIYHWL--NAARPLENVLNYIITAYHD 390
+K SRN+AKRQLTWFR ++ W+ + R E +++ II D
Sbjct: 265 --IKKGSRNYAKRQLTWFRKDKRSIWIDKDKYRSEEEIVDKIIKMVKD 310
>sp|A7FUK8|MIAA_CLOB1 tRNA dimethylallyltransferase OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=miaA PE=3 SV=1
Length = 311
Score = 173 bits (438), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/348 (33%), Positives = 182/348 (52%), Gaps = 44/348 (12%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
+++I+GPT GK+ ++++LA++LNGEIISADS+Q+Y+ +DIGSAK + + K +PHHLID
Sbjct: 4 LLIIAGPTAVGKTDISIKLAEKLNGEIISADSMQIYKYMDIGSAKITKDEMKGIPHHLID 63
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 165
++ P E+++V F A + KD+ +G++PI+ GGTGLY+ IY E
Sbjct: 64 VVEPHEEFNVSSFKALAEKSIKDIWNRGKLPIIAGGTGLYINSLIYNYDFTDADRDEKYR 123
Query: 166 EVNSELADLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQ 224
E ++LA + G Y V ++K D ++ L ND R+ R+LE+ K TG
Sbjct: 124 EYLTKLA--EDKGKEY--VHSLLKDIDKESYEKLYPNDLKRVVRALEVYKITGK------ 173
Query: 225 IPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCE 284
S E++ +E D+ Y+ F L+ +R LY I+ R +
Sbjct: 174 ----SISEYTKENE---------------KKLYDIPYNVNYFILNMNREVLYERINKRVD 214
Query: 285 DMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFL 344
M+ G++ E L G P+ S + IGY++ + YL G S Y
Sbjct: 215 IMM--GKGLIEEVKKLESMGYTPDMQS-MKGIGYKEVLFYL-----NGDISLDEAIYL-- 264
Query: 345 AEFQKASRNFAKRQLTWFRNERIYHWL--NAARPLENVLNYIITAYHD 390
+K SRN+AKRQLTWFR ++ W+ + R E +++ II D
Sbjct: 265 --IKKGSRNYAKRQLTWFRKDKRSIWIDKDKYRSEEEIVDKIIKMVKD 310
>sp|Q3A503|MIAA1_PELCD tRNA dimethylallyltransferase 1 OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=miaA1 PE=3 SV=1
Length = 314
Score = 172 bits (436), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 172/346 (49%), Gaps = 45/346 (13%)
Query: 40 SSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEV 99
+ K+ ++V+ GPT AGK+ LA+ LA L E++SADS QVYR +DIG+AKP+S + V
Sbjct: 6 NDKRPPIVVLCGPTAAGKTALAVRLAGELPVEVVSADSRQVYRHMDIGTAKPTSEELAAV 65
Query: 100 PHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKA 159
PHHLID++ P E+++ G F R A D+L + R+PIV GGTGLY++ ++G DVP
Sbjct: 66 PHHLIDVVDPDENFTAGNFCRLGRQALNDILGRNRLPIVVGGTGLYIQALLHGLIDVPDG 125
Query: 160 SPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGS 218
E+ A + L +G Y ++ V DP A+ L ND R+ R LE+
Sbjct: 126 DSELRATL-LRAEQLHGEGTLYQRLQIV----DPVLAKRLPPNDLVRIVRGLEV------ 174
Query: 219 PPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRS 278
Y+ + +H+ +++ Y + L+ R LY
Sbjct: 175 --------YELCNRRLSDLQAEHAGQKSP-------------YRVLTLGLTMSREALYER 213
Query: 279 IDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTG 338
I+ R ML DG+ E +LL G A + IGYR+ ++++L G S
Sbjct: 214 INHRVWRML--EDGLAQEVEFLLKRGYAAEC-KAMQTIGYRELVQHVL------GNLSMD 264
Query: 339 EFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYI 384
E + Q+ +R +AKRQLTWF WL++ VL I
Sbjct: 265 EAVRLI---QRDTRRYAKRQLTWFNKVNSIIWLDSFGEFAKVLKLI 307
>sp|Q3J802|MIAA_NITOC tRNA dimethylallyltransferase OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=miaA PE=3 SV=1
Length = 314
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 161/320 (50%), Gaps = 43/320 (13%)
Query: 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDI 106
+ + GPT +GK++LAL LA+RL+ EIIS DS QVY G+DIG+AKPS + R PHHLIDI
Sbjct: 8 VFLMGPTASGKTELALALAERLSCEIISVDSAQVYCGMDIGTAKPSLALRHRYPHHLIDI 67
Query: 107 LHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAE 166
L P E YS G+F DA K + K+GR+P++ GGT LY YG +P A PE+ A
Sbjct: 68 LDPAETYSAGRFRADALTLMKAISKRGRIPLLVGGTMLYFHALTYGISPLPPADPEVRAA 127
Query: 167 VNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIP 226
++ E A+++ W A + + A+ + +D R++R+LE+ + TG P S
Sbjct: 128 IDRE-ANMK---GWKALHRRLAELDPMAAQRIHHHDPQRIQRALEVFQLTGRPLSEL--- 180
Query: 227 YDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCED 285
+++ +L Y + L+ + R+ L+ I+ R
Sbjct: 181 ------------------------IANSRESELPYRVIKLILAPAERIVLHSRIERRFRA 216
Query: 286 MLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLA 345
ML G L E L L +S+ RA+GYRQA YL F
Sbjct: 217 MLKA--GFLEEVKGLFMRPDLSLGHSSIRAVGYRQAWLYL---------QDQFSFPTMAE 265
Query: 346 EFQKASRNFAKRQLTWFRNE 365
+ A+R AKRQLTW R E
Sbjct: 266 QAISATRQMAKRQLTWLRRE 285
>sp|A7GE43|MIAA_CLOBL tRNA dimethylallyltransferase OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=miaA PE=3 SV=1
Length = 311
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/348 (33%), Positives = 182/348 (52%), Gaps = 44/348 (12%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
+++I+GPT GK+ ++++LA++LNGEIISADS+Q+Y+ +DIGSAK + + K +PHHLID
Sbjct: 4 LLIIAGPTAVGKTDISIKLAEKLNGEIISADSMQIYKYMDIGSAKITKDEMKGIPHHLID 63
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 165
++ P E+++V F A + KD+ +G++PI+ GGTGLY+ IY E
Sbjct: 64 VVEPHEEFNVSSFKALAEESIKDIWNRGKLPIIAGGTGLYINSLIYNYDFTDADRDEKYR 123
Query: 166 EVNSELADLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQ 224
E ++LA + G Y V ++K D ++ L ND R+ R+LE+ K TG
Sbjct: 124 EYLTKLA--EDKGKEY--VHSLLKDIDEESYEKLYPNDLKRVVRALEVYKITGK------ 173
Query: 225 IPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCE 284
S E++ +E D+ Y+ F L+ +R LY I+ R +
Sbjct: 174 ----SISEYTKENE---------------KKLYDIPYNVNYFILNMNREVLYERINKRVD 214
Query: 285 DMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFL 344
M+ G++ E L G P+ S + IGY++ + YL G S Y
Sbjct: 215 IMM--GKGLIEEVKKLESMGYTPDMQS-MKGIGYKEVLFYL-----NGDISLDEAIYL-- 264
Query: 345 AEFQKASRNFAKRQLTWFRNERIYHWLNAAR--PLENVLNYIITAYHD 390
+K SRN+AKRQLTWFR ++ W++ + E +++ II D
Sbjct: 265 --IKKGSRNYAKRQLTWFRKDKRSIWIDKDKYNSEEEIVDKIIKMVKD 310
>sp|B8FWE4|MIAA_DESHD tRNA dimethylallyltransferase OS=Desulfitobacterium hafniense
(strain DCB-2 / DSM 10664) GN=miaA PE=3 SV=1
Length = 314
Score = 171 bits (434), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 174/348 (50%), Gaps = 56/348 (16%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
+I+I GPT GK+ L + LA+ L GEIIS DSVQVYR LDIGSAKP+ +++ VPH+L+D
Sbjct: 4 LIIIVGPTAVGKTALGVALAQALQGEIISGDSVQVYRKLDIGSAKPTLAEQGNVPHYLLD 63
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 165
L P E ++V +F A + +++ +G+VPIV GGTGLY+R I P A
Sbjct: 64 ALDPAEPFTVAQFQTLANQSIQNIQSRGKVPIVVGGTGLYIRSLI---------DPFQFA 114
Query: 166 EVNSE------LADLQRDGDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGS 218
E SE A L G A+ + DP A+ L ND R+ R+LE+ + TG
Sbjct: 115 EHGSESIRSFWTAFLSEQGK--EALHRELAKRDPLSAQRLHPNDTVRIIRALEMCQLTGK 172
Query: 219 PPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRS 278
P S + G D N L + L++ R +Y
Sbjct: 173 PFSEIR-------------------------GNQDMNYPPLPPSLLYVGLTAPREIIYER 207
Query: 279 IDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTG 338
I+ RCE M+ + G++ E L+ EG P ++IGYR A+ YL G +
Sbjct: 208 INRRCEQMV--AAGLIEETHNLIKEGYSPKLK-PLQSIGYRHALLYLY------GKVTLP 258
Query: 339 EFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNA-ARPLENVLNYII 385
E FQ+ +R+FAKRQLTWFR + W + + L N+L +I
Sbjct: 259 EMMRI---FQRDTRHFAKRQLTWFRRDPRVVWYDTYSGNLTNILESLI 303
>sp|C3KX33|MIAA_CLOB6 tRNA dimethylallyltransferase OS=Clostridium botulinum (strain 657
/ Type Ba4) GN=miaA PE=3 SV=1
Length = 311
Score = 171 bits (434), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 180/348 (51%), Gaps = 44/348 (12%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
+++I+GPT GK+ ++++LA++LNGEIISADS+Q+Y+ +DIGSAK + + K +PHHLID
Sbjct: 4 LLIIAGPTAVGKTDISIKLAEKLNGEIISADSMQIYKYMDIGSAKITKDEMKGIPHHLID 63
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 165
++ P E+++V F A + KD+ +G++PI+ GGTGLY+ IY E
Sbjct: 64 VVEPHEEFNVSSFKTLAEKSIKDIWSRGKLPIIAGGTGLYINSLIYNYDFTDADRDEKYR 123
Query: 166 EVNSELADLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQ 224
E ++L+ + G Y V ++K D K+ L ND R+ R+LE+ K TG S +
Sbjct: 124 EYLTKLS--EDKGKEY--VHSLLKDIDEKSYEKLYPNDLKRVVRALEVYKITGKSISEY- 178
Query: 225 IPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCE 284
++ D+ Y+ F L+ +R LY I+ R +
Sbjct: 179 ------------------------TKENEKKLYDIPYNVNYFVLNMNREVLYERINKRVD 214
Query: 285 DMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFL 344
M+ G++ E L G P+ S + IGY++ + YL G S Y
Sbjct: 215 IMM--GKGLIEEVKKLESMGYTPDMQSM-KGIGYKEVLFYL-----NGDISLDEAIYL-- 264
Query: 345 AEFQKASRNFAKRQLTWFRNERIYHWLNAARPL--ENVLNYIITAYHD 390
+K SRN+AKRQLTWFR ++ W++ + E +++ II D
Sbjct: 265 --IKKGSRNYAKRQLTWFRKDKRSIWIDKDKYTFEEEIVDKIIKMVKD 310
>sp|Q812Y4|MIAA_BACCR tRNA dimethylallyltransferase OS=Bacillus cereus (strain ATCC 14579
/ DSM 31) GN=miaA PE=3 SV=1
Length = 317
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 182/353 (51%), Gaps = 54/353 (15%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
+ ++EKV VI GPT GK++L+++LAK LNGEIIS DS+Q+YR +DIG+AK + ++
Sbjct: 1 MGEVQREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKAEMD 60
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
+PH++IDI +P + +SV +F E R +++ ++G++PI+ GGTGLY++ ++
Sbjct: 61 GIPHYMIDIKNPEDSFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTD 120
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFV---VKAGDPK-ARSLAANDWYRLRRSLEII 213
A I E +LA L+R VE+V ++ DP+ A + AN+ R+ R+LEI
Sbjct: 121 DAGDVIYREQREKLA-LER------GVEYVHEKLQEVDPESAERIHANNVRRVIRALEIF 173
Query: 214 KSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRL 273
+TG S QI + K+L YD L+ R
Sbjct: 174 HTTGEKMSE-QI---------------------------EKQEKELLYDVSLIGLTMDRE 205
Query: 274 DLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGG 333
LY I+LR + M+ G+L E L + G+ + +AIGY++ +Y
Sbjct: 206 MLYDRINLRVDLMM--EQGLLEEVEGLYNRGI--RDCQSIQAIGYKEIYDYF-------- 253
Query: 334 TSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNA--ARPLENVLNYI 384
+ +++ + SR +AKRQLTWFRN+ W + +L YI
Sbjct: 254 -ENRASLEDAVSQLKTNSRRYAKRQLTWFRNKMDVTWFDVTDGEKTSEILRYI 305
>sp|B7ISQ9|MIAA_BACC2 tRNA dimethylallyltransferase OS=Bacillus cereus (strain G9842)
GN=miaA PE=3 SV=1
Length = 317
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 113/353 (32%), Positives = 182/353 (51%), Gaps = 54/353 (15%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
+ ++EKV VI GPT GK++L+++LAK LNGEIIS DS+Q+YR +DIG+AK + ++
Sbjct: 1 MGEVQREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTQAEMD 60
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
+PH+++DI +P + +SV +F E R +++ ++G++PI+ GGTGLY++ ++
Sbjct: 61 GIPHYMVDIKNPEDSFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTD 120
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFV---VKAGDPK-ARSLAANDWYRLRRSLEII 213
A I E +LA L+R VE+V ++ DP+ A + AN+ R+ R+LEI
Sbjct: 121 DAGDVIYREQMEKLA-LER------GVEYVHKKLQEVDPESAERIHANNVRRVIRALEIF 173
Query: 214 KSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRL 273
+TG S QI + K+L YD L+ R
Sbjct: 174 HTTGEKMSD-QI---------------------------EKQEKELLYDVSLIGLTMDRE 205
Query: 274 DLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGG 333
LY I+LR + M+ G+L E L + G+ + +AIGY++ +Y
Sbjct: 206 MLYDRINLRVDLMM--EQGLLEEVEGLYNRGI--RDCQSIQAIGYKEIYDYF-------- 253
Query: 334 TSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNA--ARPLENVLNYI 384
+ +++ + SR +AKRQLTWFRN+ W + +L YI
Sbjct: 254 -ENRASLEDAVSQLKTNSRRYAKRQLTWFRNKMDVTWFDVTDGEKTSEILRYI 305
>sp|B0BAM1|MIAA_CHLTB tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar L2b
(strain UCH-1/proctitis) GN=miaA PE=3 SV=1
Length = 339
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 179/342 (52%), Gaps = 46/342 (13%)
Query: 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHH 102
K VI+++GPTG+GK+ ++L+LA ++GEIIS DS+QVY+G+DIG+AK S +DRKEVPHH
Sbjct: 28 KRTVILLAGPTGSGKTAVSLKLAPLVDGEIISVDSMQVYQGMDIGTAKVSLADRKEVPHH 87
Query: 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPE 162
LID+ H E ++ F+ A A +D+L + +VPI+ GGTG Y F+ G P P SP+
Sbjct: 88 LIDVCHVQESFNAVDFYYHAVQACQDILSRNKVPILVGGTGFYFHTFLSGPPSGP--SPD 145
Query: 163 IIAEVNSELADLQRD-GDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPP 220
+ L +R Y +E + DP A ++ +D ++ R+LEII+ TGS
Sbjct: 146 FVLREQLTLEAQERGISALYQELELL----DPVYAATITKHDKNKIIRALEIIRKTGSKV 201
Query: 221 SAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280
S SY S+ S +Y + LS L +I
Sbjct: 202 S--------------------SYAWQSTVNESK------EYHCRGWLLSPDPELLRHNIL 235
Query: 281 LRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEF 340
RC+ ML +G+L E LL G+ NS SA+RAIGYR+ +E+L S F
Sbjct: 236 ERCDQML--EEGLLDEVQALLAAGIKGNS-SASRAIGYREWIEFL------DLGSPPDLF 286
Query: 341 YAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLN 382
+F + + K+Q TWF+ ++ L RP+ L+
Sbjct: 287 EITKQKFITNTWRYTKKQRTWFKRYSLFREL---RPMGMTLD 325
>sp|B0B8Z2|MIAA_CHLT2 tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar L2
(strain 434/Bu / ATCC VR-902B) GN=miaA PE=3 SV=1
Length = 339
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 179/342 (52%), Gaps = 46/342 (13%)
Query: 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHH 102
K VI+++GPTG+GK+ ++L+LA ++GEIIS DS+QVY+G+DIG+AK S +DRKEVPHH
Sbjct: 28 KRTVILLAGPTGSGKTAVSLKLAPLVDGEIISVDSMQVYQGMDIGTAKVSLADRKEVPHH 87
Query: 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPE 162
LID+ H E ++ F+ A A +D+L + +VPI+ GGTG Y F+ G P P SP+
Sbjct: 88 LIDVCHVQESFNAVDFYYHAVQACQDILSRNKVPILVGGTGFYFHTFLSGPPSGP--SPD 145
Query: 163 IIAEVNSELADLQRD-GDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPP 220
+ L +R Y +E + DP A ++ +D ++ R+LEII+ TGS
Sbjct: 146 FVLREQLTLEAQERGISALYQELELL----DPVYAATITKHDKNKIIRALEIIRKTGSKV 201
Query: 221 SAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280
S SY S+ S +Y + LS L +I
Sbjct: 202 S--------------------SYAWQSTVNESK------EYHCRGWLLSPDPELLRHNIL 235
Query: 281 LRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEF 340
RC+ ML +G+L E LL G+ NS SA+RAIGYR+ +E+L S F
Sbjct: 236 ERCDQML--EEGLLDEVQALLAAGIKGNS-SASRAIGYREWIEFL------DLGSPPDLF 286
Query: 341 YAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLN 382
+F + + K+Q TWF+ ++ L RP+ L+
Sbjct: 287 EITKQKFITNTWRYTKKQRTWFKRYSLFREL---RPMGMTLD 325
>sp|B7HCI3|MIAA_BACC4 tRNA dimethylallyltransferase OS=Bacillus cereus (strain B4264)
GN=miaA PE=3 SV=1
Length = 317
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 181/353 (51%), Gaps = 54/353 (15%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
+ ++EKV VI GPT GK++L+++LAK LNGEIIS DS+Q+YR +DIG+AK + ++
Sbjct: 1 MGEVQREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKAEMD 60
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
+PH++IDI +P + +SV +F E R +++ ++G++PI+ GGTGLY++ ++
Sbjct: 61 GIPHYMIDIKNPEDSFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTD 120
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFV---VKAGDPK-ARSLAANDWYRLRRSLEII 213
A I E +LA L+R VE+V ++ DP+ A + AN+ R+ R+LEI
Sbjct: 121 DAGDVIYREQMEKLA-LER------GVEYVHKKLQEVDPESAERIHANNVRRVIRALEIF 173
Query: 214 KSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRL 273
TG S QI + K+L YD L+ R
Sbjct: 174 HMTGEKMSD-QI---------------------------EKQEKELLYDVSLIGLTMDRE 205
Query: 274 DLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGG 333
LY I+LR + M+ G+L E L + G+ + +AIGY++ +Y
Sbjct: 206 MLYDRINLRVDLMM--EQGLLEEVEGLYNRGI--RDCQSIQAIGYKEIYDYF-------- 253
Query: 334 TSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNA--ARPLENVLNYI 384
+ +++ + SR +AKRQLTWFRN+ W + +L YI
Sbjct: 254 -ENRASLEDAVSQLKTNSRRYAKRQLTWFRNKMDVTWFDVTDGEKTSEILRYI 305
>sp|C4L1B9|MIAA_EXISA tRNA dimethylallyltransferase OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=miaA PE=3 SV=1
Length = 311
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 172/334 (51%), Gaps = 48/334 (14%)
Query: 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPH 101
KK V+VI GPT GK++ +ELAK +GEI+S DSVQVYRG+DIGSAK + + + +PH
Sbjct: 2 KKTPVVVIVGPTAVGKTKTGIELAKAFDGEIVSGDSVQVYRGMDIGSAKVTKEEAEGIPH 61
Query: 102 HLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASP 161
HLIDI P + SV F + AR A D+ +G++PI+ GGTGLY+R +Y V +
Sbjct: 62 HLIDICDPDDAMSVAMFQQLARAAIDDIYARGKLPIIVGGTGLYIRSILYDYEFVERPVD 121
Query: 162 EIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPS 221
E + E LA+++ A + +V+ +A ++ N+ R+ R+LE+ +
Sbjct: 122 EALREELERLAEVE---GREALHQRLVQLDPERAATIHPNNVRRVVRALEVAMQGDT--- 175
Query: 222 AFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDL 281
+ +DS+ ++H YD+ F L + R LY I+
Sbjct: 176 ----------QTTDSAPSEH-------------------YDYRLFVLHADREILYDRINQ 206
Query: 282 RCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFY 341
R + M+ G++ E LL +G A RAIGY++ + Y+ G S
Sbjct: 207 RVDAMMEA--GLVEEVERLLAQGY--RDTQAMRAIGYKEIIPYV------EGKISKDRAT 256
Query: 342 AFLAEFQKASRNFAKRQLTWFRNERIYHWLNAAR 375
L ++ +R FAKRQLTWFR++ W++ R
Sbjct: 257 DLL---KQHTRQFAKRQLTWFRHQFDGIWVDMGR 287
>sp|O84771|MIAA_CHLTR tRNA dimethylallyltransferase OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=miaA PE=3 SV=2
Length = 314
Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 177/342 (51%), Gaps = 46/342 (13%)
Query: 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHH 102
K VI+++GPTG+GK+ ++L+LA ++GEIIS DS+QVY+G+DIG+AK S +DRKEVPHH
Sbjct: 3 KRTVILLAGPTGSGKTAVSLKLAPLVDGEIISVDSMQVYQGMDIGTAKVSLTDRKEVPHH 62
Query: 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPE 162
LID+ H E ++ F+ A A +D+L + +VPI+ GGTG Y F+ G P P SP+
Sbjct: 63 LIDVCHVQESFNAVDFYYHAVQACQDILSRNKVPILVGGTGFYFHTFLSGPPSGP--SPD 120
Query: 163 IIAEVNSELADLQRD-GDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPP 220
+ L +R Y +E + DP A ++ +D ++ R+LEII+ TGS
Sbjct: 121 FVLREQLTLEAQERGISALYQELELL----DPVYAATITKHDKNKIIRALEIIRKTGSKV 176
Query: 221 SAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280
S SY S+ S +Y + LS L +I
Sbjct: 177 S--------------------SYAWQSTVNESK------EYHCRRWLLSPDPELLRHNIL 210
Query: 281 LRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEF 340
RC+ ML +G+L E LL G+ NS SA+RAIGYR+ +E+L S F
Sbjct: 211 ERCDQML--EEGLLDEVQALLAAGIKGNS-SASRAIGYREWIEFL------DLGSPPDLF 261
Query: 341 YAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLN 382
+F + + K+Q TWF+ Y RP+ L+
Sbjct: 262 EITKQKFITNTWRYTKKQRTWFKR---YSLFRELRPMGMTLD 300
>sp|Q3KKS6|MIAA_CHLTA tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar A
(strain HAR-13 / ATCC VR-571B) GN=miaA PE=3 SV=1
Length = 339
Score = 169 bits (427), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 179/342 (52%), Gaps = 46/342 (13%)
Query: 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHH 102
K VI+++GPTG+GK+ ++L+LA ++GEIIS DS+QVY+G+DIG+AK S +DRKEVPHH
Sbjct: 28 KRTVILLAGPTGSGKTAVSLKLAPLVDGEIISVDSMQVYQGMDIGTAKVSLADRKEVPHH 87
Query: 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPE 162
LID+ H E ++ F+ A A +D+L + +VPI+ GGTG Y F+ G P P SP+
Sbjct: 88 LIDVCHVQESFNAVDFYYHAVQACQDILSRNKVPILVGGTGFYFHTFLSGPPSGP--SPD 145
Query: 163 IIAEVNSELADLQRD-GDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPP 220
+ L +R Y +E + DP A ++ +D ++ R+LEII+ TGS
Sbjct: 146 FVLREQLTLEAQERGISALYQELELL----DPVYAATITKHDKNKIIRALEIIRKTGSKV 201
Query: 221 SAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280
S SY S+ S +Y + LS L +I
Sbjct: 202 S--------------------SYAWQSTVNESK------EYHCRGWLLSPDPELLRHNIL 235
Query: 281 LRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEF 340
RC+ ML +G+L E LL G+ NS SA+RAIGYR+ +E+L S F
Sbjct: 236 ERCDQML--EEGLLDEVQALLAAGIKGNS-SASRAIGYREWIEFL------DLGSPPDLF 286
Query: 341 YAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLN 382
+F + + K+Q TWF+ ++ L RP+ L+
Sbjct: 287 EITKQKFITNTWRYTKKQRTWFKRCSLFREL---RPMGMTLD 325
>sp|B7HKR9|MIAA_BACC7 tRNA dimethylallyltransferase OS=Bacillus cereus (strain AH187)
GN=miaA PE=3 SV=1
Length = 317
Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 179/353 (50%), Gaps = 54/353 (15%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
+ ++EKV VI GPT GK++L+++LAK LNGEIIS DS+Q+YR +DIG+AK + +
Sbjct: 1 MGEVQREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKEEMD 60
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
+PH+++DI +P E +SV +F E R +++ ++G++PI+ GGTGLY++ ++
Sbjct: 61 GIPHYMVDIKNPEESFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTD 120
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFV---VKAGDPK-ARSLAANDWYRLRRSLEII 213
A I E +LA L+R VE+V ++ DP+ A + AN+ R+ R+LEI
Sbjct: 121 DAGDAIYREQMEKLA-LER------GVEYVHKKLQEVDPESAERIHANNVRRVIRALEIF 173
Query: 214 KSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRL 273
+TG S D + + +L YD L+ R
Sbjct: 174 HTTGEKMS------DQLEKQEN----------------------ELLYDVSLIGLTMDRE 205
Query: 274 DLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGG 333
LY I+LR + M+ G+L E L + G+ + +AIGY++ +Y
Sbjct: 206 MLYDRINLRVDIMM--DQGLLEEVEGLYNRGI--RDCQSIQAIGYKEIYDYF-------- 253
Query: 334 TSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNA--ARPLENVLNYI 384
+++ + SR +AKRQLTWFRN+ W + +L YI
Sbjct: 254 -EDRVSLEEAVSQLKTNSRRYAKRQLTWFRNKMDVTWFDVTDGEKTSEILRYI 305
>sp|Q65JA9|MIAA_BACLD tRNA dimethylallyltransferase OS=Bacillus licheniformis (strain DSM
13 / ATCC 14580) GN=miaA PE=3 SV=1
Length = 314
Score = 168 bits (426), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 178/337 (52%), Gaps = 48/337 (14%)
Query: 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHH 102
K VIV+ GPT GK++L++ LA+RLN EIIS DS+Q+Y+ +DIG+AK + VPHH
Sbjct: 5 KPPVIVLIGPTAVGKTKLSVMLAERLNAEIISGDSMQIYKRMDIGTAKIREEEMNGVPHH 64
Query: 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKAS-P 161
LIDI P E +SV ++ E R ++ ++G++P++ GGTGLY++ +Y +A P
Sbjct: 65 LIDIKEPTESFSVAEYQEIVRQKIAEIDRRGKLPMIVGGTGLYIQSVLYDYSFTEEAGDP 124
Query: 162 EIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPP 220
E AE+ + A +R ++ V ++K DP+ AR++ N+ R+ R+LEI+ +TG
Sbjct: 125 EFRAEMEAFSA--KRGAEY---VHDLLKERDPEAARAIHPNNKRRVIRALEILHTTGK-- 177
Query: 221 SAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280
+ EH + K+L Y L+ R LY I+
Sbjct: 178 --------TMSEHMEGQR------------------KELLYTTALIGLTMEREVLYDRIN 211
Query: 281 LRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEF 340
R + M+ +G+L E L DE + + + +AIGY++ +L G +S E
Sbjct: 212 SRVDQMM--DEGLLDEVKLLYDENV--RNCQSVQAIGYKELYAHL------EGRASLEEA 261
Query: 341 YAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPL 377
L ++ SR +AKRQLTWFRN+ W + P+
Sbjct: 262 VETL---KRNSRRYAKRQLTWFRNQMDVAWFDMTPPV 295
>sp|Q5L0D9|MIAA_GEOKA tRNA dimethylallyltransferase OS=Geobacillus kaustophilus (strain
HTA426) GN=miaA PE=3 SV=1
Length = 315
Score = 168 bits (426), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 167/330 (50%), Gaps = 46/330 (13%)
Query: 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHL 103
EKV VI GPT GK++L + LAK+L GE+IS DS+Q+Y+G+DIG+AK + + +PHHL
Sbjct: 3 EKVAVIVGPTAVGKTKLGIALAKKLGGEVISGDSMQIYKGMDIGTAKVKPDEMEGIPHHL 62
Query: 104 IDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEI 163
+DI PCE +SV +F R ++ +GR+PI+ GGTGLY++ +Y S E
Sbjct: 63 LDIKEPCEPFSVVEFQRLCRALITEISARGRLPIIVGGTGLYIQAALYDYQFSAAPSDEA 122
Query: 164 IAEVNSELADLQRDGDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPPSA 222
+LA Q + +E V DP A + ++ R+ R+LE+ TG P S
Sbjct: 123 YRRALKQLAAEQGAEALHRRLEAV----DPISAARIHPHNIRRVIRALEVYHCTGKPFSE 178
Query: 223 FQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLR 282
+Q K L Y+ L++ R LYR I+ R
Sbjct: 179 WQ----------------------------QGQSKRLLYEAAIVGLTAEREALYRRINER 210
Query: 283 CEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYA 342
++M+ + G++ EA L D GL A +AIGY++ +Y G S E
Sbjct: 211 VDEMI--AAGLIEEARALYDRGL--RDCQAVQAIGYKELYDYF------DGRVSLDEA-- 258
Query: 343 FLAEFQKASRNFAKRQLTWFRNERIYHWLN 372
+ + ++ SR +AKRQLTWFRN+ W +
Sbjct: 259 -IEQLKQNSRRYAKRQLTWFRNQMPVKWFD 287
>sp|B9IUM7|MIAA_BACCQ tRNA dimethylallyltransferase OS=Bacillus cereus (strain Q1)
GN=miaA PE=3 SV=1
Length = 317
Score = 168 bits (426), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 179/353 (50%), Gaps = 54/353 (15%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
+ ++EKV VI GPT GK++L+++LAK LNGEIIS DS+Q+YR +DIG+AK + +
Sbjct: 1 MGEVQREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKEEMD 60
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
+PH+++DI +P E +SV +F E R +++ ++G++PI+ GGTGLY++ ++
Sbjct: 61 GIPHYMVDIKNPEESFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTD 120
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFV---VKAGDPK-ARSLAANDWYRLRRSLEII 213
A I E +LA L+R VE+V ++ DP+ A + AN+ R+ R+LEI
Sbjct: 121 DAGDAIYREQMEKLA-LER------GVEYVHKKLQEVDPESAERIHANNVRRVIRALEIF 173
Query: 214 KSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRL 273
+TG S D + + +L YD L+ R
Sbjct: 174 HTTGEKMS------DQLEKQEN----------------------ELLYDVSLIGLTMDRE 205
Query: 274 DLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGG 333
LY I+LR + M+ G+L E L + G+ + +AIGY++ +Y
Sbjct: 206 MLYDRINLRVDIMM--DQGLLEEVEGLYNRGI--RDCQSIQAIGYKEIYDYF-------- 253
Query: 334 TSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNA--ARPLENVLNYI 384
+++ + SR +AKRQLTWFRN+ W + +L YI
Sbjct: 254 -EDRVSLEEAVSQLKTNSRRYAKRQLTWFRNKMDVTWFDVTDGEKTSEILRYI 305
>sp|B8FNN5|MIAA_DESAA tRNA dimethylallyltransferase OS=Desulfatibacillum alkenivorans
(strain AK-01) GN=miaA PE=3 SV=1
Length = 306
Score = 168 bits (425), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 110/329 (33%), Positives = 161/329 (48%), Gaps = 43/329 (13%)
Query: 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHH 102
KEK++VI+GPTG GKS L LA+ GEIISAD+V VYR LDIG+AKP DR+ VPHH
Sbjct: 4 KEKIVVIAGPTGVGKSASTLPLAREFGGEIISADAVSVYRCLDIGAAKPGMEDRRLVPHH 63
Query: 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPE 162
+ID++ P ED+ + AR + + + + V GGTG Y++ +YG ++ PE
Sbjct: 64 MIDVVDPDEDFDANIYAAQARAIAQSLHESDKRVFVDGGTGFYIKALLYGLFTEGRSDPE 123
Query: 163 IIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSA 222
+ + E A L +A + + P A+ + ND YR+ R+LEI TG P SA
Sbjct: 124 LRDSLRREAAQLGS----HALHDRLKDLDPPSAKRIHPNDAYRITRALEICILTGKPASA 179
Query: 223 FQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLR 282
Q H +E + YD + F L R LY+ D R
Sbjct: 180 QQ--------------AAHGFEESP-------------YDVLFFCLHREREILYQRTDQR 212
Query: 283 CEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYA 342
+ ML + G+ E LL+ G P S ++IGYR +Y+ + +
Sbjct: 213 VDQML--AMGLEQEVRGLLENGYGPELKS-MQSIGYRHMCQYI---------TGALNYED 260
Query: 343 FLAEFQKASRNFAKRQLTWFRNERIYHWL 371
+ ++ +R AKRQ+TWF+ W+
Sbjct: 261 AVTLMKRDTRRLAKRQMTWFKAYPEIRWM 289
>sp|B3E5Z1|MIAA1_GEOLS tRNA dimethylallyltransferase 1 OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=miaA1 PE=3 SV=1
Length = 305
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/329 (35%), Positives = 176/329 (53%), Gaps = 43/329 (13%)
Query: 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHH 102
K +V+VI+GPT +GKS LAL+LA L+GEII ADS+ VYRGLDIGSAKP++ ++++PHH
Sbjct: 2 KPRVLVIAGPTASGKSALALDLAVALDGEIICADSLTVYRGLDIGSAKPTAEQQRQIPHH 61
Query: 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPE 162
L+DI P E ++ F A+ A + ++G+ PI+ GGTGLYLR + G D P P
Sbjct: 62 LLDIREPTEPFTAADFKLAAKAAIAAICQRGKRPILAGGTGLYLRALLRGLNDAPGEDPV 121
Query: 163 IIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSA 222
+ + L + +G E + K ++ L N+ R+ R+LE+ ++TG P S
Sbjct: 122 LRETLRKRL---ECEGAETLLAE-LAKVDPDTSQRLHPNNRNRIIRALEVFQTTGIPLSQ 177
Query: 223 FQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLR 282
FQ +H + D YD + F L R +LY+ ID R
Sbjct: 178 FQ--------------AEHGF-------------ADSPYDSLQFCLDLPRPELYQRIDDR 210
Query: 283 CEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYA 342
+ ML + G+++E LL G+ P +AIGY++ + +L G E
Sbjct: 211 VDAML--AAGLVAEVQGLLQSGV-PADCKPLQAIGYKEVLAHL------QGEYDHNEMVR 261
Query: 343 FLAEFQKASRNFAKRQLTWFRNERIYHWL 371
+ ++ +R+FAKRQLTWFR+E W+
Sbjct: 262 LI---KRNTRHFAKRQLTWFRSEPAMQWV 287
>sp|Q3KIZ0|MIAA_PSEPF tRNA dimethylallyltransferase OS=Pseudomonas fluorescens (strain
Pf0-1) GN=miaA PE=3 SV=1
Length = 323
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 172/339 (50%), Gaps = 43/339 (12%)
Query: 41 SKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVP 100
S+ I + GPT AGK+ LA+EL K L E+IS DS VYRG+DIG+AKPS E P
Sbjct: 2 SQLPPAIFLMGPTAAGKTDLAIELTKVLPCELISVDSALVYRGMDIGTAKPSKELLAEFP 61
Query: 101 HHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKAS 160
H LIDIL P E YS F DA A ++ +G++P++ GGT LY + I G D+P A
Sbjct: 62 HRLIDILDPAEAYSAADFRRDALEAMAEITARGKIPLLVGGTMLYYKALIEGLADMPAAD 121
Query: 161 PEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSP 219
PE+ A++ E A L + A+ + A DP+ A + ND RL R+LE+ + +G
Sbjct: 122 PEVRAQIEEEAARLG-----WQALHDQLAAIDPESAARIHPNDPQRLSRALEVYRVSGQS 176
Query: 220 PSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRS 278
+ ++ ++ S+E A+ + + L Y ++ ++R L+
Sbjct: 177 MTELRL-----KQSVQSTE------------AAASGLQQLPYTVANLAIAPTNRQVLHER 219
Query: 279 IDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTG 338
I R +ML G + E L + L + RA+GYRQ ++L G +S
Sbjct: 220 IKQRFTNML--EQGFIDEVVALRNRSDLHAGLPSIRAVGYRQVWDFL-----DGKLTS-- 270
Query: 339 EFYAFLAEFQK----ASRNFAKRQLTWFRNERIYHWLNA 373
AE Q+ A+R AKRQ TW R+ + HWL++
Sbjct: 271 ------AEMQERGIIATRQLAKRQFTWLRSWKDLHWLDS 303
>sp|Q733B9|MIAA_BACC1 tRNA dimethylallyltransferase OS=Bacillus cereus (strain ATCC
10987) GN=miaA PE=3 SV=1
Length = 317
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 179/353 (50%), Gaps = 54/353 (15%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
+ ++EKV VI GPT GK++L+++LAK LNGEIIS DS+Q+YR +DIG+AK + +
Sbjct: 1 MGEVQREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKEEMD 60
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
+PH+++DI +P E +SV +F E R +++ ++G++PI+ GGTGLY++ ++
Sbjct: 61 GIPHYMVDIKNPEESFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTD 120
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFV---VKAGDPK-ARSLAANDWYRLRRSLEII 213
A I E +LA L+R VE+V ++ DP+ A + AN+ R+ R+LEI
Sbjct: 121 DAGDVIYREHMEKLA-LER------GVEYVHKKLQEVDPESAERIHANNVRRVIRALEIF 173
Query: 214 KSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRL 273
+TG S D + + +L YD L+ R
Sbjct: 174 HTTGEKMS------DQLEKQEN----------------------ELLYDVSLIGLTMDRE 205
Query: 274 DLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGG 333
LY I+LR + M+ G+L E L + G+ + +AIGY++ +Y
Sbjct: 206 MLYDRINLRVDIMM--DQGLLEEVEGLYNRGI--RDCQSIQAIGYKEIYDYF-------- 253
Query: 334 TSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNA--ARPLENVLNYI 384
+++ + SR +AKRQLTWFRN+ W + +L YI
Sbjct: 254 -EDRVSLEEAVSQLKTNSRRYAKRQLTWFRNKMDVTWFDVTDGEKTSEILRYI 305
>sp|B2VAE4|MIAA_SULSY tRNA dimethylallyltransferase OS=Sulfurihydrogenibium sp. (strain
YO3AOP1) GN=miaA PE=3 SV=1
Length = 307
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/351 (31%), Positives = 185/351 (52%), Gaps = 60/351 (17%)
Query: 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105
+IVI+G T GK++L ++LAK L+GE+ISADS+ VY+ +DIG+AKPS +R+ + H++ID
Sbjct: 1 MIVIAGATATGKTELCIKLAKLLDGEVISADSMMVYKYMDIGTAKPSVEEREGIEHYVID 60
Query: 106 ILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKAS----P 161
++ P ++YSV + ED A + + +KG++PIV GGT LY++ +YG D P++
Sbjct: 61 VVLPSQNYSVKDYIEDFDKAVQKIREKGKIPIVVGGTWLYIQGALYGLSDAPESDWTLRE 120
Query: 162 EIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPP 220
++ + VN EL Y ++ V DP+ A + ND R+ R+LE+ TG P
Sbjct: 121 KLYSLVNLEL---------YTQLQKV----DPEYANKIHVNDKRRIVRALEVYYLTGKPF 167
Query: 221 SAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280
S F +H N K Y+F+ F L R +L I+
Sbjct: 168 SFF------INQH---------------------NFKSKRYNFLGFILERDRQELMDRIE 200
Query: 281 LRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYL-LRCRQQGGTSSTGE 339
+R E M G++ E L+D G +S ++ +AIGY++ + YL + + E
Sbjct: 201 IRVEKMF--EKGLVEEVKKLVDMG-FKDSLTSMQAIGYKEILPYLDKKISLEDAKKCIIE 257
Query: 340 FYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAAR-PLENVLNYIITAYH 389
+++FAKRQ+ FRN+ + + A++ + +L+YI Y+
Sbjct: 258 ----------NTKDFAKRQIRTFRNKTDFEKIEASKFEVNEMLDYIYRKYN 298
>sp|B0S1C3|MIAA_FINM2 tRNA dimethylallyltransferase OS=Finegoldia magna (strain ATCC
29328) GN=miaA PE=3 SV=1
Length = 314
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 182/342 (53%), Gaps = 49/342 (14%)
Query: 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHH 102
++K IVI GPTG GK++L++ LAKRL+ EIISADS+Q+Y+ +DIG+AK ++ + HH
Sbjct: 2 RKKCIVIVGPTGVGKTRLSIFLAKRLSSEIISADSMQIYKYMDIGTAKVEPKYQRVIKHH 61
Query: 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYG-KPDVPKASP 161
LIDI+ P E+++V +F +++ K ++PI+ GGTGLY+ + + + K+
Sbjct: 62 LIDIVEPYENFNVEQFKNLCIEKIEEISSKNKIPIIVGGTGLYINSITHKLEFNAVKSDD 121
Query: 162 EIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPP 220
++ E+ E LQ + + +++ DPK A + N+ R+ R++E+ K TG
Sbjct: 122 KLREEL--ENISLQYGNE---KLHEILEDIDPKSADKIHMNNVRRVIRAIEVCKLTGHKF 176
Query: 221 SAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280
S +D + + DYDF L+ R LY I+
Sbjct: 177 SEINDKFDHYND---------------------------DYDFYIIGLNDDRQVLYERIN 209
Query: 281 LRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEF 340
R ++M+ +G ++E ++ + + ++ + +AIGYR+A YL ++ F
Sbjct: 210 KRVDEMI--DEGFMAECKYIYE--MTDENSQSIQAIGYREAFMYL---------NNKISF 256
Query: 341 YAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAA--RPLENV 380
++ +K SR +AKRQLTWFR ++ HW+N R E++
Sbjct: 257 KDMISLMKKNSRKYAKRQLTWFRQDKRIHWMNLKDFREFEDI 298
>sp|A0RH88|MIAA_BACAH tRNA dimethylallyltransferase OS=Bacillus thuringiensis (strain Al
Hakam) GN=miaA PE=3 SV=1
Length = 320
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/353 (31%), Positives = 179/353 (50%), Gaps = 54/353 (15%)
Query: 38 VASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRK 97
+ ++EKV VI GPT GK++L+++LAK LNGEIIS DS+Q+YR +DIG+AK + +
Sbjct: 4 MGEVQREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKEEMD 63
Query: 98 EVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157
+PH+++DI +P E +SV +F E R +++ ++G++PI+ GGTGLY++ ++
Sbjct: 64 GIPHYMVDIKNPEESFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTD 123
Query: 158 KASPEIIAEVNSELADLQRDGDWYAAVEFV---VKAGDPK-ARSLAANDWYRLRRSLEII 213
A I E +LA L+R VE+V ++ DP+ A + AN+ R+ R+LEI
Sbjct: 124 DAGDAIYREQMEKLA-LER------GVEYVHKKLQEVDPESAERIHANNVRRVIRALEIF 176
Query: 214 KSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRL 273
++G S D + + +L YD L+ R
Sbjct: 177 HTSGEKMS------DQLEKQEN----------------------ELLYDVSLIGLTMDRE 208
Query: 274 DLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGG 333
LY I+LR + M+ G+L E L + G+ + +AIGY++ +Y
Sbjct: 209 MLYDRINLRVDIMM--DQGLLEEVEGLYNRGI--RDCQSIQAIGYKEIYDYF-------- 256
Query: 334 TSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNA--ARPLENVLNYI 384
+++ + SR +AKRQLTWFRN+ W + +L YI
Sbjct: 257 -EDRVSLEEAVSQLKTNSRRYAKRQLTWFRNKMDVTWFDVTDGEKTSEILRYI 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,853,713
Number of Sequences: 539616
Number of extensions: 7403999
Number of successful extensions: 31992
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 358
Number of HSP's that attempted gapping in prelim test: 29238
Number of HSP's gapped (non-prelim): 1903
length of query: 455
length of database: 191,569,459
effective HSP length: 121
effective length of query: 334
effective length of database: 126,275,923
effective search space: 42176158282
effective search space used: 42176158282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)