Query 012837
Match_columns 455
No_of_seqs 235 out of 2330
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:49:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02840 tRNA dimethylallyltra 100.0 2E-103 4E-108 814.2 37.7 401 42-448 19-419 (421)
2 PRK14729 miaA tRNA delta(2)-is 100.0 1.1E-80 2.4E-85 622.7 30.7 296 42-384 2-298 (300)
3 COG0324 MiaA tRNA delta(2)-iso 100.0 3.1E-78 6.8E-83 604.0 30.5 302 43-388 2-305 (308)
4 TIGR00174 miaA tRNA isopenteny 100.0 5.4E-77 1.2E-81 593.1 28.8 286 46-376 1-287 (287)
5 PRK00091 miaA tRNA delta(2)-is 100.0 1.1E-74 2.3E-79 582.3 30.9 301 42-388 2-305 (307)
6 PLN02748 tRNA dimethylallyltra 100.0 1.7E-71 3.8E-76 584.0 28.8 305 42-375 20-369 (468)
7 PF01715 IPPT: IPP transferase 100.0 2.6E-68 5.5E-73 523.3 19.7 251 78-373 1-252 (253)
8 PLN02165 adenylate isopentenyl 100.0 2.5E-58 5.4E-63 465.6 24.5 246 40-375 39-296 (334)
9 KOG1384 tRNA delta(2)-isopente 100.0 3.6E-52 7.9E-57 414.1 21.4 298 43-429 6-337 (348)
10 PF01745 IPT: Isopentenyl tran 99.9 4.4E-21 9.6E-26 183.0 18.7 214 45-364 2-224 (233)
11 COG0283 Cmk Cytidylate kinase 99.1 1.3E-11 2.9E-16 118.4 2.1 42 45-88 5-46 (222)
12 PRK00300 gmk guanylate kinase; 99.1 4.5E-11 9.7E-16 112.6 4.4 100 42-150 3-115 (205)
13 cd00071 GMPK Guanosine monopho 99.1 9.4E-11 2E-15 105.2 5.0 97 46-151 1-107 (137)
14 TIGR03263 guanyl_kin guanylate 99.1 5.2E-11 1.1E-15 109.8 3.2 97 44-149 1-110 (180)
15 PRK04220 2-phosphoglycerate ki 99.0 2.9E-10 6.3E-15 114.8 5.9 89 42-140 90-197 (301)
16 PRK14737 gmk guanylate kinase; 99.0 3.5E-10 7.6E-15 106.7 5.2 89 42-139 2-100 (186)
17 COG0194 Gmk Guanylate kinase [ 98.9 2E-09 4.3E-14 101.5 8.1 87 43-139 3-99 (191)
18 PF00625 Guanylate_kin: Guanyl 98.8 1.1E-09 2.4E-14 102.1 2.6 90 43-140 1-100 (183)
19 PRK11860 bifunctional 3-phosph 98.7 6.5E-09 1.4E-13 115.4 2.8 42 44-87 442-483 (661)
20 smart00072 GuKc Guanylate kina 98.6 3.7E-08 8.1E-13 92.1 4.9 90 44-141 2-101 (184)
21 PRK12269 bifunctional cytidyla 98.6 2.2E-08 4.7E-13 113.7 2.9 49 34-87 27-75 (863)
22 PRK14738 gmk guanylate kinase; 98.5 2E-07 4.4E-12 89.0 7.9 100 42-151 11-120 (206)
23 PRK05057 aroK shikimate kinase 98.5 2.9E-07 6.2E-12 85.6 6.8 81 43-142 3-83 (172)
24 PRK00131 aroK shikimate kinase 98.4 2.8E-07 6.1E-12 83.6 5.9 80 43-141 3-82 (175)
25 PLN02772 guanylate kinase 98.4 2.4E-07 5.2E-12 96.7 5.1 89 43-139 134-232 (398)
26 COG0703 AroK Shikimate kinase 98.4 2.5E-07 5.5E-12 86.5 4.3 79 44-141 2-80 (172)
27 TIGR00017 cmk cytidylate kinas 98.4 8.4E-07 1.8E-11 85.8 7.8 40 45-86 3-42 (217)
28 PF13207 AAA_17: AAA domain; P 98.4 2.9E-07 6.3E-12 79.1 3.7 32 46-77 1-32 (121)
29 COG0396 sufC Cysteine desulfur 98.3 7E-07 1.5E-11 87.0 6.0 89 30-126 19-109 (251)
30 PRK13477 bifunctional pantoate 98.3 4E-07 8.6E-12 98.3 4.5 44 43-88 283-326 (512)
31 PRK13946 shikimate kinase; Pro 98.3 6.3E-07 1.4E-11 83.9 5.2 81 43-143 9-89 (184)
32 COG1102 Cmk Cytidylate kinase 98.3 1.1E-05 2.5E-10 74.9 13.2 38 46-85 2-39 (179)
33 PRK09518 bifunctional cytidyla 98.3 5E-07 1.1E-11 101.3 5.1 40 46-87 3-42 (712)
34 PRK13948 shikimate kinase; Pro 98.3 1.1E-06 2.3E-11 83.0 6.2 81 42-141 8-88 (182)
35 TIGR01313 therm_gnt_kin carboh 98.2 2.4E-06 5.2E-11 77.7 6.8 33 47-79 1-33 (163)
36 COG4619 ABC-type uncharacteriz 98.2 1.7E-06 3.6E-11 81.2 5.4 57 27-91 15-72 (223)
37 cd00464 SK Shikimate kinase (S 98.2 2.4E-06 5.1E-11 76.3 5.3 78 47-144 2-79 (154)
38 PRK13949 shikimate kinase; Pro 98.2 2.1E-06 4.6E-11 79.7 5.1 78 45-141 2-79 (169)
39 PRK06217 hypothetical protein; 98.2 9.4E-06 2E-10 75.8 9.4 34 45-78 2-35 (183)
40 PRK13947 shikimate kinase; Pro 98.2 3.8E-06 8.2E-11 76.8 6.4 33 46-78 3-35 (171)
41 PRK13808 adenylate kinase; Pro 98.1 0.00022 4.7E-09 73.5 19.4 32 46-77 2-33 (333)
42 PRK10078 ribose 1,5-bisphospho 98.1 5.3E-06 1.1E-10 77.7 7.0 34 44-77 2-35 (186)
43 PRK00023 cmk cytidylate kinase 98.1 1.7E-06 3.6E-11 84.1 2.8 43 42-86 2-44 (225)
44 PF13671 AAA_33: AAA domain; P 98.1 6E-06 1.3E-10 72.7 5.6 33 46-78 1-33 (143)
45 PRK00625 shikimate kinase; Pro 98.1 4E-06 8.6E-11 78.5 4.7 80 46-141 2-81 (173)
46 PRK05800 cobU adenosylcobinami 98.0 7.6E-06 1.6E-10 76.4 5.8 91 45-151 2-94 (170)
47 PRK07261 topology modulation p 98.0 7E-06 1.5E-10 76.3 4.7 34 46-79 2-35 (171)
48 PLN02199 shikimate kinase 98.0 9E-06 2E-10 82.3 5.5 78 44-141 102-181 (303)
49 PRK08118 topology modulation p 98.0 6.4E-06 1.4E-10 76.4 4.1 34 45-78 2-35 (167)
50 cd02020 CMPK Cytidine monophos 97.9 8.6E-06 1.9E-10 71.8 3.8 31 46-76 1-31 (147)
51 TIGR02322 phosphon_PhnN phosph 97.9 1.2E-05 2.7E-10 74.1 4.8 25 45-69 2-26 (179)
52 PRK03731 aroL shikimate kinase 97.9 1.4E-05 3.1E-10 73.2 5.1 34 45-78 3-36 (171)
53 PRK06547 hypothetical protein; 97.9 1.2E-05 2.6E-10 75.2 4.5 37 42-78 13-49 (172)
54 COG0572 Udk Uridine kinase [Nu 97.9 3.6E-05 7.8E-10 74.7 7.9 42 43-86 7-51 (218)
55 COG1120 FepC ABC-type cobalami 97.9 1.2E-05 2.6E-10 79.9 4.2 51 31-89 18-69 (258)
56 PRK14530 adenylate kinase; Pro 97.9 1.6E-05 3.4E-10 76.1 4.8 35 43-77 2-36 (215)
57 PRK03839 putative kinase; Prov 97.9 1.4E-05 3.1E-10 73.9 4.3 32 46-77 2-33 (180)
58 PRK14021 bifunctional shikimat 97.8 1.7E-05 3.7E-10 86.5 5.0 81 43-142 5-85 (542)
59 PRK08233 hypothetical protein; 97.8 2E-05 4.4E-10 72.2 4.8 35 43-77 2-37 (182)
60 COG0563 Adk Adenylate kinase a 97.8 1E-05 2.3E-10 76.1 2.8 37 46-84 2-38 (178)
61 PRK08154 anaerobic benzoate ca 97.8 2.6E-05 5.7E-10 79.2 5.6 84 42-144 131-214 (309)
62 cd02021 GntK Gluconate kinase 97.8 2E-05 4.3E-10 70.5 4.0 33 46-78 1-33 (150)
63 PRK05480 uridine/cytidine kina 97.8 2.7E-05 5.9E-10 73.9 4.9 38 41-78 3-43 (209)
64 TIGR01359 UMP_CMP_kin_fam UMP- 97.8 2.5E-05 5.4E-10 72.1 4.1 32 46-77 1-32 (183)
65 PRK05541 adenylylsulfate kinas 97.7 6.1E-05 1.3E-09 69.5 6.6 29 41-69 4-32 (176)
66 PRK06762 hypothetical protein; 97.7 2.3E-05 4.9E-10 71.5 3.7 34 44-77 2-37 (166)
67 PF00004 AAA: ATPase family as 97.7 9.9E-05 2.1E-09 63.4 7.4 33 47-79 1-33 (132)
68 TIGR01360 aden_kin_iso1 adenyl 97.7 2.8E-05 6E-10 71.7 4.1 35 43-77 2-36 (188)
69 TIGR01663 PNK-3'Pase polynucle 97.7 0.00031 6.7E-09 76.5 12.6 36 42-77 367-402 (526)
70 PRK11545 gntK gluconate kinase 97.7 0.00038 8.3E-09 64.2 11.5 29 50-78 1-29 (163)
71 PRK14531 adenylate kinase; Pro 97.7 4.6E-05 1E-09 71.2 4.6 33 45-77 3-35 (183)
72 PTZ00301 uridine kinase; Provi 97.7 3.9E-05 8.4E-10 74.1 4.0 39 43-83 2-47 (210)
73 PRK14527 adenylate kinase; Pro 97.7 4E-05 8.7E-10 71.9 4.0 36 42-77 4-39 (191)
74 PRK14532 adenylate kinase; Pro 97.6 5.1E-05 1.1E-09 70.7 4.5 32 46-77 2-33 (188)
75 PRK12337 2-phosphoglycerate ki 97.6 9.2E-05 2E-09 79.1 6.8 43 42-84 253-297 (475)
76 PRK04182 cytidylate kinase; Pr 97.6 4.3E-05 9.2E-10 69.8 3.7 31 46-76 2-32 (180)
77 COG1124 DppF ABC-type dipeptid 97.6 0.00013 2.8E-09 71.8 7.0 51 30-88 22-73 (252)
78 PRK06696 uridine kinase; Valid 97.6 6.9E-05 1.5E-09 72.2 4.9 37 42-78 20-61 (223)
79 cd01428 ADK Adenylate kinase ( 97.6 6.3E-05 1.4E-09 69.8 4.3 31 47-77 2-32 (194)
80 PRK12338 hypothetical protein; 97.6 0.00015 3.3E-09 74.2 7.4 36 42-77 2-38 (319)
81 PRK14734 coaE dephospho-CoA ki 97.6 0.00094 2E-08 63.8 12.4 33 45-78 2-34 (200)
82 COG1126 GlnQ ABC-type polar am 97.6 5.8E-05 1.3E-09 73.3 4.0 50 29-86 16-66 (240)
83 cd03292 ABC_FtsE_transporter F 97.6 7.8E-05 1.7E-09 70.6 4.8 51 30-88 16-67 (214)
84 PRK08356 hypothetical protein; 97.6 9.2E-05 2E-09 69.8 5.2 33 44-77 5-37 (195)
85 PTZ00088 adenylate kinase 1; P 97.6 7.5E-05 1.6E-09 73.0 4.7 35 44-78 6-40 (229)
86 cd00227 CPT Chloramphenicol (C 97.6 6.6E-05 1.4E-09 69.5 4.1 30 44-73 2-31 (175)
87 TIGR02173 cyt_kin_arch cytidyl 97.6 6.4E-05 1.4E-09 68.2 3.9 32 46-77 2-33 (171)
88 PLN02200 adenylate kinase fami 97.6 8.6E-05 1.9E-09 72.7 5.0 35 43-77 42-76 (234)
89 PHA02530 pseT polynucleotide k 97.5 7.1E-05 1.5E-09 74.6 4.3 35 44-78 2-37 (300)
90 TIGR00235 udk uridine kinase. 97.5 8.1E-05 1.7E-09 70.8 4.4 36 42-77 4-42 (207)
91 cd02024 NRK1 Nicotinamide ribo 97.5 7.3E-05 1.6E-09 71.0 3.9 33 46-78 1-34 (187)
92 PF00485 PRK: Phosphoribulokin 97.5 7.3E-05 1.6E-09 70.4 3.9 24 46-69 1-24 (194)
93 COG1136 SalX ABC-type antimicr 97.5 9.5E-05 2.1E-09 72.2 4.7 53 29-89 19-72 (226)
94 COG4559 ABC-type hemin transpo 97.5 8.4E-05 1.8E-09 72.1 4.0 56 28-91 14-70 (259)
95 smart00382 AAA ATPases associa 97.5 0.00013 2.8E-09 61.4 4.6 28 44-71 2-29 (148)
96 PRK13951 bifunctional shikimat 97.5 0.00013 2.9E-09 78.7 5.6 77 46-141 2-78 (488)
97 PRK01184 hypothetical protein; 97.5 0.00011 2.3E-09 68.2 4.3 31 45-76 2-32 (184)
98 PRK14730 coaE dephospho-CoA ki 97.5 0.00011 2.4E-09 69.9 4.4 34 45-78 2-35 (195)
99 PRK10584 putative ABC transpor 97.5 0.00013 2.8E-09 70.1 4.8 51 30-88 25-76 (228)
100 cd03296 ABC_CysA_sulfate_impor 97.5 0.00014 3E-09 70.5 5.1 50 30-87 17-67 (239)
101 TIGR01166 cbiO cobalt transpor 97.5 0.00013 2.8E-09 68.2 4.6 49 30-86 7-56 (190)
102 TIGR02211 LolD_lipo_ex lipopro 97.5 0.00013 2.8E-09 69.6 4.6 51 30-88 20-71 (221)
103 cd03225 ABC_cobalt_CbiO_domain 97.5 0.00013 2.9E-09 69.0 4.7 48 31-86 17-65 (211)
104 cd03301 ABC_MalK_N The N-termi 97.5 0.00015 3.3E-09 68.7 5.1 50 30-87 15-65 (213)
105 COG3842 PotA ABC-type spermidi 97.5 0.00012 2.5E-09 76.0 4.5 56 28-91 18-74 (352)
106 TIGR01351 adk adenylate kinase 97.5 0.0001 2.2E-09 70.3 3.8 31 47-77 2-32 (210)
107 cd03263 ABC_subfamily_A The AB 97.5 0.00013 2.9E-09 69.4 4.6 49 30-86 17-66 (220)
108 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 0.00013 2.8E-09 69.4 4.5 50 30-87 19-69 (218)
109 COG3839 MalK ABC-type sugar tr 97.4 0.00011 2.4E-09 75.7 4.2 60 30-97 18-78 (338)
110 PRK14528 adenylate kinase; Pro 97.4 0.00014 3E-09 68.5 4.4 34 45-78 2-35 (186)
111 PRK00279 adk adenylate kinase; 97.4 0.00015 3.2E-09 69.5 4.7 32 46-77 2-33 (215)
112 TIGR02673 FtsE cell division A 97.4 0.00014 3.1E-09 68.9 4.5 49 30-86 17-66 (214)
113 PF01202 SKI: Shikimate kinase 97.4 6.9E-05 1.5E-09 68.5 2.3 71 53-142 1-71 (158)
114 TIGR00960 3a0501s02 Type II (G 97.4 0.00015 3.1E-09 69.1 4.5 49 30-86 18-67 (216)
115 PRK12339 2-phosphoglycerate ki 97.4 0.00028 6E-09 67.5 6.4 35 43-77 2-37 (197)
116 PF00448 SRP54: SRP54-type pro 97.4 0.00013 2.8E-09 69.6 4.1 35 44-78 1-40 (196)
117 cd03226 ABC_cobalt_CbiO_domain 97.4 0.00015 3.3E-09 68.5 4.5 48 31-86 16-64 (205)
118 cd03259 ABC_Carb_Solutes_like 97.4 0.00016 3.5E-09 68.6 4.6 50 30-87 15-65 (213)
119 cd03261 ABC_Org_Solvent_Resist 97.4 0.00016 3.4E-09 69.9 4.5 49 30-86 15-64 (235)
120 TIGR03608 L_ocin_972_ABC putat 97.4 0.00016 3.5E-09 68.1 4.5 49 30-86 13-62 (206)
121 cd03262 ABC_HisP_GlnQ_permease 97.4 0.00017 3.6E-09 68.3 4.6 49 30-86 15-64 (213)
122 PF00005 ABC_tran: ABC transpo 97.4 9.2E-05 2E-09 64.9 2.6 47 32-86 2-49 (137)
123 cd03256 ABC_PhnC_transporter A 97.4 0.00016 3.5E-09 69.7 4.5 50 30-87 16-66 (241)
124 PRK11629 lolD lipoprotein tran 97.4 0.00016 3.6E-09 69.7 4.5 50 30-87 24-74 (233)
125 TIGR02315 ABC_phnC phosphonate 97.4 0.00016 3.5E-09 69.9 4.5 50 30-87 17-67 (243)
126 cd03235 ABC_Metallic_Cations A 97.4 0.00015 3.3E-09 68.8 4.2 48 30-85 14-62 (213)
127 cd03269 ABC_putative_ATPase Th 97.4 0.00017 3.8E-09 68.3 4.5 49 30-86 15-64 (210)
128 cd03258 ABC_MetN_methionine_tr 97.4 0.00017 3.8E-09 69.3 4.6 50 30-87 20-70 (233)
129 cd02023 UMPK Uridine monophosp 97.4 0.00015 3.2E-09 68.2 3.8 32 46-77 1-35 (198)
130 KOG3354 Gluconate kinase [Carb 97.4 0.00017 3.7E-09 66.8 4.0 36 44-79 12-47 (191)
131 TIGR03864 PQQ_ABC_ATP ABC tran 97.4 0.00018 4E-09 69.5 4.5 50 30-87 16-66 (236)
132 PRK15177 Vi polysaccharide exp 97.4 0.00019 4.1E-09 68.8 4.5 43 31-81 3-45 (213)
133 cd03224 ABC_TM1139_LivF_branch 97.4 0.00018 3.9E-09 68.5 4.4 49 30-86 15-64 (222)
134 PRK02496 adk adenylate kinase; 97.4 0.00016 3.5E-09 67.1 4.0 34 45-78 2-35 (184)
135 PRK15453 phosphoribulokinase; 97.4 0.0002 4.2E-09 72.3 4.7 40 41-80 2-46 (290)
136 TIGR01184 ntrCD nitrate transp 97.4 0.00024 5.1E-09 68.7 5.2 47 33-87 3-50 (230)
137 cd03260 ABC_PstB_phosphate_tra 97.4 0.00023 5.1E-09 68.2 5.1 54 30-86 15-69 (227)
138 PRK00081 coaE dephospho-CoA ki 97.4 0.0002 4.4E-09 67.8 4.6 33 45-78 3-35 (194)
139 cd03265 ABC_DrrA DrrA is the A 97.4 0.0002 4.3E-09 68.5 4.6 49 30-86 15-64 (220)
140 PRK10908 cell division protein 97.4 0.0002 4.2E-09 68.6 4.5 49 30-86 17-66 (222)
141 cd03219 ABC_Mj1267_LivG_branch 97.4 0.00018 3.9E-09 69.3 4.2 49 30-86 15-64 (236)
142 PRK13541 cytochrome c biogenes 97.3 0.00022 4.8E-09 67.0 4.7 49 30-86 15-64 (195)
143 COG0410 LivF ABC-type branched 97.3 0.00017 3.7E-09 70.5 3.9 62 29-98 17-79 (237)
144 COG1131 CcmA ABC-type multidru 97.3 0.00025 5.5E-09 71.6 5.4 53 28-88 18-71 (293)
145 PRK09825 idnK D-gluconate kina 97.3 0.00022 4.9E-09 66.7 4.7 34 43-76 2-35 (176)
146 PRK04040 adenylate kinase; Pro 97.3 0.0002 4.4E-09 67.7 4.4 35 44-78 2-38 (188)
147 cd03229 ABC_Class3 This class 97.3 0.00023 4.9E-09 66.1 4.6 49 30-86 15-64 (178)
148 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00026 5.7E-09 69.2 5.2 24 46-69 1-24 (249)
149 PF13238 AAA_18: AAA domain; P 97.3 0.00015 3.2E-09 62.1 3.0 22 47-68 1-22 (129)
150 cd03257 ABC_NikE_OppD_transpor 97.3 0.00021 4.5E-09 68.3 4.4 50 30-87 20-70 (228)
151 cd03293 ABC_NrtD_SsuB_transpor 97.3 0.00021 4.5E-09 68.3 4.3 49 30-86 19-68 (220)
152 PF06414 Zeta_toxin: Zeta toxi 97.3 0.00036 7.7E-09 66.1 5.8 39 40-78 11-52 (199)
153 PRK11248 tauB taurine transpor 97.3 0.00023 5E-09 70.1 4.6 49 30-86 16-65 (255)
154 PRK13538 cytochrome c biogenes 97.3 0.00024 5.1E-09 67.3 4.5 50 30-87 16-66 (204)
155 cd02022 DPCK Dephospho-coenzym 97.3 0.00021 4.5E-09 66.6 4.0 32 46-78 1-32 (179)
156 cd03264 ABC_drug_resistance_li 97.3 0.00021 4.6E-09 67.7 4.2 48 30-86 15-63 (211)
157 cd03295 ABC_OpuCA_Osmoprotecti 97.3 0.00028 6E-09 68.5 5.1 50 30-87 16-66 (242)
158 cd02025 PanK Pantothenate kina 97.3 0.00018 3.9E-09 69.7 3.7 33 46-78 1-40 (220)
159 cd03246 ABCC_Protease_Secretio 97.3 0.0003 6.5E-09 64.9 5.0 49 30-86 17-66 (173)
160 PRK10247 putative ABC transpor 97.3 0.00026 5.6E-09 68.1 4.7 50 29-86 21-71 (225)
161 COG4608 AppF ABC-type oligopep 97.3 0.00025 5.4E-09 70.8 4.7 51 29-87 27-78 (268)
162 cd03228 ABCC_MRP_Like The MRP 97.3 0.00031 6.6E-09 64.8 4.9 49 30-86 17-66 (171)
163 cd03218 ABC_YhbG The ABC trans 97.3 0.00025 5.4E-09 68.1 4.5 49 30-86 15-64 (232)
164 cd03230 ABC_DR_subfamily_A Thi 97.3 0.00027 5.8E-09 65.3 4.5 49 30-86 15-64 (173)
165 PRK14731 coaE dephospho-CoA ki 97.3 0.00029 6.3E-09 67.5 4.9 35 43-78 4-38 (208)
166 PRK06893 DNA replication initi 97.3 0.0068 1.5E-07 58.8 14.5 90 44-142 39-133 (229)
167 cd02028 UMPK_like Uridine mono 97.3 0.00018 4E-09 67.3 3.4 34 46-79 1-39 (179)
168 TIGR01189 ccmA heme ABC export 97.3 0.00026 5.7E-09 66.6 4.5 49 30-86 15-64 (198)
169 PRK11264 putative amino-acid A 97.3 0.00026 5.6E-09 68.9 4.6 49 30-86 18-67 (250)
170 TIGR00554 panK_bact pantothena 97.3 0.0002 4.2E-09 72.6 3.8 37 42-78 60-103 (290)
171 PRK09493 glnQ glutamine ABC tr 97.3 0.00026 5.6E-09 68.6 4.5 49 30-86 16-65 (240)
172 cd03215 ABC_Carb_Monos_II This 97.3 0.00027 5.8E-09 65.8 4.5 50 30-87 15-65 (182)
173 PRK13540 cytochrome c biogenes 97.3 0.00028 6.1E-09 66.6 4.6 49 30-86 16-65 (200)
174 PRK10895 lipopolysaccharide AB 97.3 0.00025 5.5E-09 68.6 4.5 49 30-86 18-67 (241)
175 TIGR02324 CP_lyasePhnL phospho 97.3 0.00027 5.9E-09 67.6 4.6 44 30-81 23-66 (224)
176 cd03267 ABC_NatA_like Similar 97.3 0.00026 5.6E-09 68.7 4.4 45 28-80 34-78 (236)
177 cd03298 ABC_ThiQ_thiamine_tran 97.3 0.00029 6.2E-09 66.8 4.6 46 33-86 16-62 (211)
178 PRK11124 artP arginine transpo 97.3 0.00028 6E-09 68.4 4.5 50 29-86 16-66 (242)
179 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.3 0.0003 6.4E-09 68.0 4.7 49 30-86 18-67 (238)
180 KOG0707 Guanylate kinase [Nucl 97.3 0.00061 1.3E-08 66.6 6.8 68 44-119 37-104 (231)
181 cd03223 ABCD_peroxisomal_ALDP 97.3 0.00031 6.7E-09 64.7 4.6 43 31-81 17-59 (166)
182 cd03268 ABC_BcrA_bacitracin_re 97.3 0.00029 6.3E-09 66.6 4.5 49 30-86 15-64 (208)
183 cd03214 ABC_Iron-Siderophores_ 97.3 0.00032 6.9E-09 65.2 4.7 49 30-86 14-63 (180)
184 TIGR03410 urea_trans_UrtE urea 97.3 0.00029 6.3E-09 67.7 4.5 49 30-86 15-64 (230)
185 cd02019 NK Nucleoside/nucleoti 97.3 0.00029 6.4E-09 55.8 3.7 23 46-68 1-23 (69)
186 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.00031 6.6E-09 63.4 4.3 44 30-81 15-58 (144)
187 cd03252 ABCC_Hemolysin The ABC 97.3 0.00031 6.8E-09 67.8 4.7 49 30-86 17-66 (237)
188 PRK00889 adenylylsulfate kinas 97.3 0.00027 5.8E-09 65.2 4.0 36 42-77 2-42 (175)
189 PRK07667 uridine kinase; Provi 97.3 0.00033 7.1E-09 66.2 4.7 36 43-78 16-56 (193)
190 PRK06620 hypothetical protein; 97.3 0.0082 1.8E-07 58.0 14.4 30 45-74 45-74 (214)
191 PRK13635 cbiO cobalt transport 97.3 0.00032 6.9E-09 70.0 4.9 51 30-88 22-73 (279)
192 PRK13539 cytochrome c biogenes 97.3 0.00032 6.9E-09 66.7 4.6 48 30-85 17-65 (207)
193 PF13173 AAA_14: AAA domain 97.2 0.00029 6.4E-09 61.9 4.1 91 44-144 2-99 (128)
194 COG1116 TauB ABC-type nitrate/ 97.2 0.00027 5.8E-09 69.8 4.1 45 28-80 16-60 (248)
195 PRK13648 cbiO cobalt transport 97.2 0.00031 6.7E-09 69.5 4.6 49 30-86 24-73 (269)
196 PRK13543 cytochrome c biogenes 97.2 0.00032 7E-09 66.9 4.6 49 30-86 26-75 (214)
197 cd03250 ABCC_MRP_domain1 Domai 97.2 0.00034 7.3E-09 66.1 4.7 43 31-81 21-63 (204)
198 cd03245 ABCC_bacteriocin_expor 97.2 0.00037 8E-09 66.4 4.9 49 30-86 19-68 (220)
199 PRK14733 coaE dephospho-CoA ki 97.2 0.00032 6.9E-09 67.5 4.5 36 43-78 5-40 (204)
200 cd03254 ABCC_Glucan_exporter_l 97.2 0.00035 7.6E-09 67.0 4.7 43 30-80 18-60 (229)
201 cd03247 ABCC_cytochrome_bd The 97.2 0.00038 8.3E-09 64.5 4.8 43 30-80 17-59 (178)
202 cd03294 ABC_Pro_Gly_Bertaine T 97.2 0.00036 7.8E-09 69.2 4.9 49 30-86 39-88 (269)
203 PRK14250 phosphate ABC transpo 97.2 0.00033 7.2E-09 68.1 4.6 49 30-86 18-67 (241)
204 TIGR02770 nickel_nikD nickel i 97.2 0.00034 7.4E-09 67.5 4.6 51 32-86 3-54 (230)
205 PRK11247 ssuB aliphatic sulfon 97.2 0.00034 7.3E-09 69.2 4.6 44 30-81 27-70 (257)
206 PRK13649 cbiO cobalt transport 97.2 0.00033 7.1E-09 69.6 4.5 50 30-87 22-72 (280)
207 COG3638 ABC-type phosphate/pho 97.2 0.00037 8E-09 68.5 4.7 53 27-87 16-69 (258)
208 PRK10575 iron-hydroxamate tran 97.2 0.00032 6.8E-09 69.3 4.2 49 30-86 26-75 (265)
209 PRK14256 phosphate ABC transpo 97.2 0.00058 1.2E-08 66.7 6.0 36 30-68 19-54 (252)
210 PRK14242 phosphate transporter 97.2 0.00035 7.6E-09 68.1 4.5 54 30-86 21-75 (253)
211 cd03216 ABC_Carb_Monos_I This 97.2 0.00038 8.3E-09 63.9 4.5 43 30-80 15-57 (163)
212 TIGR03005 ectoine_ehuA ectoine 97.2 0.00035 7.7E-09 68.2 4.5 49 30-86 15-64 (252)
213 PRK11701 phnK phosphonate C-P 97.2 0.00036 7.8E-09 68.5 4.6 48 30-85 21-69 (258)
214 PRK13638 cbiO cobalt transport 97.2 0.00035 7.6E-09 69.2 4.4 49 30-86 16-65 (271)
215 PRK13647 cbiO cobalt transport 97.2 0.00037 8E-09 69.3 4.6 49 30-86 20-69 (274)
216 PRK11614 livF leucine/isoleuci 97.2 0.00038 8.2E-09 67.3 4.5 49 30-86 20-69 (237)
217 PRK11153 metN DL-methionine tr 97.2 0.00038 8.3E-09 71.7 4.8 51 30-88 20-71 (343)
218 cd03266 ABC_NatA_sodium_export 97.2 0.0004 8.6E-09 66.1 4.6 50 30-87 20-70 (218)
219 PRK15056 manganese/iron transp 97.2 0.00036 7.9E-09 69.2 4.5 49 30-86 22-71 (272)
220 PF00406 ADK: Adenylate kinase 97.2 0.0002 4.4E-09 64.5 2.4 29 49-77 1-29 (151)
221 PRK13645 cbiO cobalt transport 97.2 0.00037 8.1E-09 69.7 4.5 49 30-86 26-75 (289)
222 TIGR01188 drrA daunorubicin re 97.2 0.00037 7.9E-09 70.3 4.5 49 30-86 8-57 (302)
223 TIGR02868 CydC thiol reductant 97.2 0.00035 7.6E-09 75.4 4.6 48 31-86 351-399 (529)
224 cd03238 ABC_UvrA The excision 97.2 0.00038 8.2E-09 65.4 4.2 35 28-65 8-42 (176)
225 PRK05439 pantothenate kinase; 97.2 0.00061 1.3E-08 69.6 6.0 38 41-78 83-127 (311)
226 PRK10851 sulfate/thiosulfate t 97.2 0.00042 9.2E-09 71.8 4.9 51 30-88 17-68 (353)
227 cd03248 ABCC_TAP TAP, the Tran 97.2 0.00046 1E-08 66.1 4.9 49 30-86 29-78 (226)
228 PRK11831 putative ABC transpor 97.2 0.0004 8.6E-09 68.8 4.5 50 30-87 22-72 (269)
229 TIGR02323 CP_lyasePhnK phospho 97.2 0.00038 8.3E-09 67.9 4.3 43 30-80 18-60 (253)
230 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00048 1E-08 59.9 4.4 33 30-65 4-36 (107)
231 TIGR02769 nickel_nikE nickel i 97.2 0.00039 8.5E-09 68.6 4.4 50 30-87 26-76 (265)
232 cd03231 ABC_CcmA_heme_exporter 97.2 0.00043 9.3E-09 65.5 4.5 43 30-80 15-57 (201)
233 cd03297 ABC_ModC_molybdenum_tr 97.2 0.00041 8.8E-09 66.0 4.3 45 33-86 16-61 (214)
234 cd03251 ABCC_MsbA MsbA is an e 97.2 0.00047 1E-08 66.3 4.7 49 30-86 17-66 (234)
235 cd00009 AAA The AAA+ (ATPases 97.2 0.00046 1E-08 58.8 4.2 34 43-76 18-54 (151)
236 PRK11022 dppD dipeptide transp 97.2 0.00043 9.4E-09 70.8 4.7 56 29-88 21-77 (326)
237 PRK13632 cbiO cobalt transport 97.2 0.00045 9.8E-09 68.4 4.7 49 30-86 24-73 (271)
238 PRK11308 dppF dipeptide transp 97.1 0.00047 1E-08 70.7 4.9 50 30-87 30-80 (327)
239 TIGR01277 thiQ thiamine ABC tr 97.1 0.00045 9.7E-09 65.7 4.5 48 31-86 14-62 (213)
240 PRK11300 livG leucine/isoleuci 97.1 0.00041 8.8E-09 67.7 4.3 50 29-86 19-69 (255)
241 PRK15079 oligopeptide ABC tran 97.1 0.0005 1.1E-08 70.6 5.1 51 30-88 36-87 (331)
242 PRK10419 nikE nickel transport 97.1 0.00048 1E-08 68.3 4.8 50 30-87 27-77 (268)
243 TIGR03411 urea_trans_UrtD urea 97.1 0.00046 1E-08 66.8 4.6 50 30-87 17-67 (242)
244 PRK13548 hmuV hemin importer A 97.1 0.00044 9.6E-09 68.0 4.5 49 30-86 17-66 (258)
245 PLN02674 adenylate kinase 97.1 0.00046 1E-08 68.2 4.6 35 43-77 30-64 (244)
246 PRK14245 phosphate ABC transpo 97.1 0.00045 9.9E-09 67.3 4.5 53 30-87 18-73 (250)
247 cd03244 ABCC_MRP_domain2 Domai 97.1 0.00052 1.1E-08 65.4 4.8 48 30-85 19-67 (221)
248 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.1 0.00046 9.9E-09 66.5 4.4 44 29-80 36-79 (224)
249 TIGR02314 ABC_MetN D-methionin 97.1 0.00049 1.1E-08 71.2 4.8 52 30-89 20-72 (343)
250 PRK09544 znuC high-affinity zi 97.1 0.00048 1E-08 67.8 4.5 44 30-81 19-62 (251)
251 cd03290 ABCC_SUR1_N The SUR do 97.1 0.00053 1.1E-08 65.4 4.7 49 30-86 16-65 (218)
252 COG3840 ThiQ ABC-type thiamine 97.1 0.00068 1.5E-08 64.7 5.3 53 33-93 17-70 (231)
253 PRK10619 histidine/lysine/argi 97.1 0.00049 1.1E-08 67.5 4.5 49 30-86 20-69 (257)
254 cd02027 APSK Adenosine 5'-phos 97.1 0.0012 2.6E-08 59.9 6.8 23 46-68 1-23 (149)
255 PRK14237 phosphate transporter 97.1 0.00051 1.1E-08 67.9 4.7 55 29-86 34-89 (267)
256 PRK13646 cbiO cobalt transport 97.1 0.00051 1.1E-08 68.7 4.6 50 30-87 22-72 (286)
257 TIGR02982 heterocyst_DevA ABC 97.1 0.00054 1.2E-08 65.6 4.6 50 30-87 20-70 (220)
258 cd03253 ABCC_ATM1_transporter 97.1 0.00056 1.2E-08 65.8 4.7 49 30-86 16-65 (236)
259 TIGR01288 nodI ATP-binding ABC 97.1 0.0005 1.1E-08 69.4 4.5 49 30-86 19-68 (303)
260 PRK13644 cbiO cobalt transport 97.1 0.00052 1.1E-08 68.2 4.6 50 30-87 17-67 (274)
261 PRK15112 antimicrobial peptide 97.1 0.00052 1.1E-08 67.9 4.5 49 30-86 28-77 (267)
262 PRK10771 thiQ thiamine transpo 97.1 0.00054 1.2E-08 66.1 4.5 46 33-86 17-63 (232)
263 cd03369 ABCC_NFT1 Domain 2 of 97.1 0.00062 1.3E-08 64.4 4.9 49 30-86 23-72 (207)
264 PRK13651 cobalt transporter AT 97.1 0.00051 1.1E-08 69.7 4.5 43 30-80 22-64 (305)
265 TIGR00972 3a0107s01c2 phosphat 97.1 0.00056 1.2E-08 66.6 4.7 36 30-68 16-51 (247)
266 PF08433 KTI12: Chromatin asso 97.1 0.00091 2E-08 67.0 6.2 81 45-151 2-87 (270)
267 TIGR03740 galliderm_ABC gallid 97.1 0.00056 1.2E-08 65.5 4.6 43 30-80 15-57 (223)
268 PRK13975 thymidylate kinase; P 97.1 0.00063 1.4E-08 63.4 4.8 27 44-70 2-28 (196)
269 PRK15093 antimicrobial peptide 97.1 0.00058 1.3E-08 69.9 5.0 56 29-88 21-77 (330)
270 PRK11231 fecE iron-dicitrate t 97.1 0.00052 1.1E-08 67.2 4.4 50 29-86 16-66 (255)
271 PRK13634 cbiO cobalt transport 97.1 0.0006 1.3E-08 68.5 4.9 50 30-87 22-72 (290)
272 PRK11650 ugpC glycerol-3-phosp 97.1 0.00055 1.2E-08 71.0 4.7 51 30-88 19-70 (356)
273 PRK09473 oppD oligopeptide tra 97.1 0.00057 1.2E-08 70.1 4.8 54 30-88 31-85 (330)
274 PRK13641 cbiO cobalt transport 97.1 0.00056 1.2E-08 68.5 4.6 50 30-87 22-72 (287)
275 PRK14235 phosphate transporter 97.1 0.00067 1.5E-08 67.1 5.0 54 30-86 34-88 (267)
276 cd03233 ABC_PDR_domain1 The pl 97.1 0.0005 1.1E-08 65.2 4.0 53 30-87 22-75 (202)
277 PLN02459 probable adenylate ki 97.1 0.00065 1.4E-08 67.8 4.9 36 42-77 27-62 (261)
278 TIGR03265 PhnT2 putative 2-ami 97.1 0.00052 1.1E-08 71.1 4.4 51 30-88 19-70 (353)
279 TIGR00152 dephospho-CoA kinase 97.1 0.00045 9.8E-09 64.6 3.6 33 46-78 1-33 (188)
280 COG1219 ClpX ATP-dependent pro 97.1 0.0005 1.1E-08 70.2 4.1 36 44-79 97-132 (408)
281 PRK13637 cbiO cobalt transport 97.1 0.00059 1.3E-08 68.4 4.6 51 30-88 22-73 (287)
282 TIGR00968 3a0106s01 sulfate AB 97.1 0.00073 1.6E-08 65.5 5.1 50 29-86 14-64 (237)
283 cd03234 ABCG_White The White s 97.1 0.00056 1.2E-08 65.7 4.3 52 30-86 22-74 (226)
284 PRK13639 cbiO cobalt transport 97.1 0.00059 1.3E-08 67.9 4.5 49 30-86 17-66 (275)
285 PLN02348 phosphoribulokinase 97.1 0.00062 1.3E-08 71.5 4.8 29 42-70 47-75 (395)
286 TIGR03258 PhnT 2-aminoethylpho 97.1 0.00035 7.6E-09 72.7 3.0 51 29-87 19-72 (362)
287 PRK13650 cbiO cobalt transport 97.1 0.00062 1.3E-08 67.9 4.6 49 30-86 22-71 (279)
288 PRK10418 nikD nickel transport 97.1 0.00064 1.4E-08 66.6 4.6 53 30-86 18-71 (254)
289 PRK08903 DnaA regulatory inact 97.1 0.018 3.8E-07 55.3 14.5 26 43-68 41-66 (227)
290 TIGR03873 F420-0_ABC_ATP propo 97.0 0.00061 1.3E-08 66.7 4.4 50 29-86 15-65 (256)
291 PRK13631 cbiO cobalt transport 97.0 0.00064 1.4E-08 69.5 4.7 50 30-87 41-91 (320)
292 PRK13643 cbiO cobalt transport 97.0 0.00064 1.4E-08 68.2 4.6 49 30-86 21-70 (288)
293 PRK14257 phosphate ABC transpo 97.0 0.00061 1.3E-08 69.9 4.4 55 30-87 97-152 (329)
294 TIGR03575 selen_PSTK_euk L-ser 97.0 0.0056 1.2E-07 63.4 11.5 32 46-77 1-38 (340)
295 PRK14267 phosphate ABC transpo 97.0 0.00065 1.4E-08 66.3 4.4 55 30-87 19-74 (253)
296 PF05496 RuvB_N: Holliday junc 97.0 0.00063 1.4E-08 66.6 4.2 85 45-140 51-135 (233)
297 PRK14269 phosphate ABC transpo 97.0 0.00066 1.4E-08 66.1 4.4 53 30-87 17-70 (246)
298 PRK14248 phosphate ABC transpo 97.0 0.0007 1.5E-08 66.9 4.6 55 30-87 36-91 (268)
299 PRK14239 phosphate transporter 97.0 0.00065 1.4E-08 66.2 4.3 35 30-67 20-54 (252)
300 COG1132 MdlB ABC-type multidru 97.0 0.00066 1.4E-08 74.1 4.7 51 30-88 344-395 (567)
301 COG1428 Deoxynucleoside kinase 97.0 0.0007 1.5E-08 65.5 4.3 29 44-72 4-32 (216)
302 TIGR01186 proV glycine betaine 97.0 0.00065 1.4E-08 70.8 4.4 51 29-87 7-58 (363)
303 COG3265 GntK Gluconate kinase 97.0 0.0013 2.8E-08 60.6 5.7 30 50-79 1-30 (161)
304 COG0444 DppD ABC-type dipeptid 97.0 0.0012 2.6E-08 67.4 6.1 71 29-106 19-92 (316)
305 PRK11432 fbpC ferric transport 97.0 0.00075 1.6E-08 69.9 4.8 49 31-87 22-71 (351)
306 PRK11000 maltose/maltodextrin 97.0 0.00068 1.5E-08 70.6 4.5 50 30-87 18-68 (369)
307 PRK13633 cobalt transporter AT 97.0 0.00073 1.6E-08 67.4 4.5 50 30-87 25-75 (280)
308 PRK13652 cbiO cobalt transport 97.0 0.00075 1.6E-08 67.2 4.6 49 30-86 19-68 (277)
309 PF01583 APS_kinase: Adenylyls 97.0 0.0035 7.6E-08 58.1 8.7 26 43-68 1-26 (156)
310 PRK10253 iron-enterobactin tra 97.0 0.00066 1.4E-08 67.0 4.2 49 30-86 22-71 (265)
311 COG0411 LivG ABC-type branched 97.0 0.00014 3.1E-09 71.6 -0.6 64 28-99 17-81 (250)
312 PRK09452 potA putrescine/sperm 97.0 0.00073 1.6E-08 70.7 4.7 50 31-88 30-80 (375)
313 cd03291 ABCC_CFTR1 The CFTR su 97.0 0.00075 1.6E-08 67.8 4.6 44 30-81 52-95 (282)
314 PRK14253 phosphate ABC transpo 97.0 0.00081 1.8E-08 65.4 4.7 54 30-86 18-72 (249)
315 COG1419 FlhF Flagellar GTP-bin 97.0 0.00062 1.4E-08 71.5 4.1 37 42-78 201-244 (407)
316 cd03213 ABCG_EPDR ABCG transpo 97.0 0.00076 1.6E-08 63.6 4.4 51 30-86 24-75 (194)
317 CHL00131 ycf16 sulfate ABC tra 97.0 0.00067 1.5E-08 66.0 4.1 51 30-86 22-73 (252)
318 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.0016 3.4E-08 64.8 6.7 36 30-68 19-54 (254)
319 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.00087 1.9E-08 60.7 4.5 42 31-80 15-56 (157)
320 PRK14526 adenylate kinase; Pro 97.0 0.00075 1.6E-08 65.2 4.3 32 46-77 2-33 (211)
321 TIGR03522 GldA_ABC_ATP gliding 97.0 0.0011 2.3E-08 67.0 5.5 51 29-87 16-67 (301)
322 PRK13642 cbiO cobalt transport 97.0 0.00084 1.8E-08 66.8 4.7 50 30-87 22-72 (277)
323 COG1118 CysA ABC-type sulfate/ 97.0 0.00072 1.6E-08 68.8 4.2 50 24-81 11-60 (345)
324 TIGR00390 hslU ATP-dependent p 97.0 0.00079 1.7E-08 71.4 4.7 38 43-80 46-83 (441)
325 PRK09580 sufC cysteine desulfu 97.0 0.00064 1.4E-08 65.9 3.7 51 30-86 16-67 (248)
326 PRK07429 phosphoribulokinase; 97.0 0.00083 1.8E-08 69.1 4.7 37 42-78 6-45 (327)
327 COG1117 PstB ABC-type phosphat 97.0 0.00072 1.6E-08 65.8 3.9 65 28-95 20-85 (253)
328 cd03288 ABCC_SUR2 The SUR doma 97.0 0.00095 2.1E-08 65.6 4.9 49 30-86 36-85 (257)
329 TIGR03797 NHPM_micro_ABC2 NHPM 97.0 0.00078 1.7E-08 75.2 4.8 49 30-86 468-517 (686)
330 PRK13546 teichoic acids export 96.9 0.00084 1.8E-08 66.7 4.5 43 30-80 39-81 (264)
331 PRK13537 nodulation ABC transp 96.9 0.00079 1.7E-08 68.2 4.4 51 29-87 21-72 (306)
332 PRK13636 cbiO cobalt transport 96.9 0.00088 1.9E-08 67.0 4.6 49 30-86 21-70 (283)
333 PRK10522 multidrug transporter 96.9 0.00082 1.8E-08 73.1 4.7 50 30-87 338-388 (547)
334 PRK13547 hmuV hemin importer A 96.9 0.00082 1.8E-08 67.0 4.4 37 30-69 16-52 (272)
335 cd03299 ABC_ModC_like Archeal 96.9 0.0009 1.9E-08 64.8 4.5 50 30-87 14-64 (235)
336 PF07728 AAA_5: AAA domain (dy 96.9 0.00082 1.8E-08 59.3 3.9 27 46-72 1-27 (139)
337 TIGR02142 modC_ABC molybdenum 96.9 0.00086 1.9E-08 69.4 4.6 47 33-87 15-62 (354)
338 cd03300 ABC_PotA_N PotA is an 96.9 0.00094 2E-08 64.5 4.6 49 30-86 15-64 (232)
339 PRK11144 modC molybdate transp 96.9 0.00085 1.8E-08 69.4 4.6 46 33-86 16-62 (352)
340 TIGR01978 sufC FeS assembly AT 96.9 0.00076 1.7E-08 65.1 3.9 51 30-86 15-66 (243)
341 PRK14259 phosphate ABC transpo 96.9 0.00086 1.9E-08 66.5 4.3 54 30-86 28-82 (269)
342 PRK05201 hslU ATP-dependent pr 96.9 0.00079 1.7E-08 71.4 4.2 35 44-78 50-84 (443)
343 cd03289 ABCC_CFTR2 The CFTR su 96.9 0.00092 2E-08 67.0 4.5 48 31-87 20-68 (275)
344 PRK14247 phosphate ABC transpo 96.9 0.00083 1.8E-08 65.4 4.1 54 30-86 18-72 (250)
345 COG1936 Predicted nucleotide k 96.9 0.00082 1.8E-08 63.2 3.8 31 45-76 1-31 (180)
346 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00083 1.8E-08 69.9 4.2 40 42-82 76-115 (361)
347 PRK13536 nodulation factor exp 96.9 0.00093 2E-08 68.9 4.5 50 30-87 56-106 (340)
348 PRK14238 phosphate transporter 96.9 0.0011 2.3E-08 65.9 4.8 54 30-86 39-93 (271)
349 COG4987 CydC ABC-type transpor 96.9 0.00073 1.6E-08 72.9 3.8 51 30-88 353-404 (573)
350 PRK14254 phosphate ABC transpo 96.9 0.00095 2.1E-08 66.9 4.4 54 30-86 54-108 (285)
351 COG1341 Predicted GTPase or GT 96.9 0.0053 1.1E-07 64.5 10.0 89 42-132 71-171 (398)
352 PRK14236 phosphate transporter 96.9 0.001 2.3E-08 65.9 4.6 55 29-86 39-94 (272)
353 PF01121 CoaE: Dephospho-CoA k 96.9 0.00077 1.7E-08 63.6 3.5 32 46-78 2-33 (180)
354 cd03222 ABC_RNaseL_inhibitor T 96.9 0.00097 2.1E-08 62.7 4.1 38 35-80 19-56 (177)
355 PRK10070 glycine betaine trans 96.9 0.00094 2E-08 70.5 4.5 49 31-87 44-93 (400)
356 PRK14266 phosphate ABC transpo 96.9 0.0011 2.5E-08 64.5 4.7 54 30-86 18-72 (250)
357 cd00544 CobU Adenosylcobinamid 96.9 0.0016 3.4E-08 60.9 5.4 90 46-151 1-91 (169)
358 PTZ00451 dephospho-CoA kinase; 96.9 0.00096 2.1E-08 66.0 4.2 33 45-77 2-34 (244)
359 PRK11160 cysteine/glutathione 96.9 0.00093 2E-08 73.2 4.6 49 30-86 355-404 (574)
360 TIGR03415 ABC_choXWV_ATP choli 96.9 0.00096 2.1E-08 70.0 4.4 42 31-80 40-81 (382)
361 TIGR01193 bacteriocin_ABC ABC- 96.9 0.00097 2.1E-08 74.7 4.8 48 31-86 490-538 (708)
362 TIGR03375 type_I_sec_LssB type 96.9 0.00097 2.1E-08 74.6 4.7 49 30-86 480-529 (694)
363 PRK14263 phosphate ABC transpo 96.9 0.0012 2.6E-08 65.3 4.8 54 31-87 24-78 (261)
364 TIGR03796 NHPM_micro_ABC1 NHPM 96.9 0.00099 2.1E-08 74.6 4.7 49 30-86 494-543 (710)
365 PRK14272 phosphate ABC transpo 96.9 0.0011 2.4E-08 64.6 4.5 36 30-68 19-54 (252)
366 PF07724 AAA_2: AAA domain (Cd 96.9 0.0011 2.4E-08 61.9 4.3 34 44-77 3-40 (171)
367 PRK14274 phosphate ABC transpo 96.9 0.0011 2.4E-08 65.0 4.5 54 30-86 27-81 (259)
368 PRK10744 pstB phosphate transp 96.9 0.001 2.2E-08 65.4 4.2 36 30-68 28-63 (260)
369 cd01672 TMPK Thymidine monopho 96.9 0.0011 2.4E-08 61.0 4.3 25 45-69 1-25 (200)
370 TIGR02857 CydD thiol reductant 96.9 0.0011 2.3E-08 71.7 4.8 49 30-86 337-386 (529)
371 COG4604 CeuD ABC-type enteroch 96.9 0.0014 3.1E-08 63.2 5.0 52 28-87 14-66 (252)
372 TIGR00041 DTMP_kinase thymidyl 96.9 0.0008 1.7E-08 62.7 3.3 27 43-69 2-28 (195)
373 PRK10762 D-ribose transporter 96.9 0.00098 2.1E-08 71.8 4.4 49 30-86 19-68 (501)
374 PRK14262 phosphate ABC transpo 96.9 0.001 2.2E-08 64.8 4.1 36 30-68 18-53 (250)
375 PRK11176 lipid transporter ATP 96.8 0.0012 2.5E-08 72.1 5.0 48 31-86 359-407 (582)
376 PRK00698 tmk thymidylate kinas 96.8 0.00095 2.1E-08 62.4 3.7 27 43-69 2-28 (205)
377 PRK03846 adenylylsulfate kinas 96.8 0.0014 3E-08 62.0 4.8 27 42-68 22-48 (198)
378 PRK14261 phosphate ABC transpo 96.8 0.0011 2.4E-08 64.7 4.2 37 29-68 20-56 (253)
379 PRK09700 D-allose transporter 96.8 0.001 2.2E-08 71.7 4.4 48 31-86 279-327 (510)
380 cd03232 ABC_PDR_domain2 The pl 96.8 0.0011 2.3E-08 62.4 4.0 45 30-80 22-66 (192)
381 PRK10938 putative molybdenum t 96.8 0.0011 2.4E-08 71.0 4.6 44 29-80 17-60 (490)
382 PRK14273 phosphate ABC transpo 96.8 0.0011 2.4E-08 64.8 4.1 54 30-86 22-76 (254)
383 PF06068 TIP49: TIP49 C-termin 96.8 0.0012 2.5E-08 68.9 4.5 41 43-83 49-91 (398)
384 PRK13640 cbiO cobalt transport 96.8 0.0013 2.9E-08 65.6 4.8 36 30-68 22-57 (282)
385 PRK10636 putative ABC transpor 96.8 0.001 2.3E-08 74.0 4.4 44 30-81 16-59 (638)
386 TIGR00958 3a01208 Conjugate Tr 96.8 0.0012 2.6E-08 74.2 5.0 42 31-80 497-538 (711)
387 PRK14252 phosphate ABC transpo 96.8 0.0012 2.7E-08 65.0 4.5 36 30-68 31-66 (265)
388 COG0237 CoaE Dephospho-CoA kin 96.8 0.0013 2.9E-08 63.1 4.5 34 44-78 2-35 (201)
389 PRK08084 DNA replication initi 96.8 0.019 4.1E-07 56.1 12.6 26 44-69 45-70 (235)
390 COG4133 CcmA ABC-type transpor 96.8 0.0016 3.4E-08 62.3 4.8 51 28-86 14-66 (209)
391 PRK14732 coaE dephospho-CoA ki 96.8 0.0011 2.3E-08 63.3 3.7 32 46-78 1-32 (196)
392 COG1134 TagH ABC-type polysacc 96.8 0.0013 2.7E-08 65.0 4.2 42 33-82 45-86 (249)
393 COG4778 PhnL ABC-type phosphon 96.8 0.0016 3.5E-08 61.6 4.8 42 31-80 27-68 (235)
394 PRK14241 phosphate transporter 96.8 0.0012 2.6E-08 64.7 4.2 54 30-86 19-73 (258)
395 PRK09700 D-allose transporter 96.8 0.0011 2.4E-08 71.4 4.2 50 30-87 20-70 (510)
396 TIGR03771 anch_rpt_ABC anchore 96.8 0.0012 2.6E-08 63.5 3.9 34 42-80 4-37 (223)
397 PRK14244 phosphate ABC transpo 96.8 0.0013 2.9E-08 64.1 4.3 36 30-68 20-55 (251)
398 PRK14240 phosphate transporter 96.8 0.0013 2.8E-08 64.1 4.1 36 30-68 18-53 (250)
399 COG2884 FtsE Predicted ATPase 96.8 0.0019 4.1E-08 61.9 5.1 53 30-90 17-70 (223)
400 PRK11174 cysteine/glutathione 96.8 0.0012 2.6E-08 72.2 4.3 36 30-68 365-400 (588)
401 PRK14255 phosphate ABC transpo 96.8 0.0013 2.8E-08 64.1 4.1 36 30-68 20-55 (252)
402 PRK11607 potG putrescine trans 96.8 0.0014 2.9E-08 68.7 4.5 49 31-87 35-84 (377)
403 PRK14270 phosphate ABC transpo 96.8 0.0014 3E-08 64.0 4.3 55 30-87 19-74 (251)
404 PRK15134 microcin C ABC transp 96.8 0.0012 2.7E-08 71.4 4.3 54 30-86 24-78 (529)
405 PRK14251 phosphate ABC transpo 96.8 0.0014 3.1E-08 63.8 4.3 36 30-68 19-54 (251)
406 COG1618 Predicted nucleotide k 96.8 0.0062 1.3E-07 57.0 8.2 28 42-69 3-30 (179)
407 TIGR02204 MsbA_rel ABC transpo 96.7 0.0016 3.4E-08 71.0 5.1 48 31-86 356-404 (576)
408 PRK06761 hypothetical protein; 96.7 0.0014 3E-08 66.3 4.2 33 44-76 3-35 (282)
409 PRK15064 ABC transporter ATP-b 96.7 0.0014 3E-08 71.1 4.5 43 30-80 16-58 (530)
410 KOG0609 Calcium/calmodulin-dep 96.7 0.0021 4.6E-08 69.1 5.8 90 42-139 338-437 (542)
411 PRK10762 D-ribose transporter 96.7 0.0014 2.9E-08 70.7 4.4 49 31-87 268-317 (501)
412 PRK14529 adenylate kinase; Pro 96.7 0.0012 2.6E-08 64.5 3.6 30 46-75 2-31 (223)
413 PRK10789 putative multidrug tr 96.7 0.0015 3.3E-08 71.5 4.7 43 30-80 330-372 (569)
414 TIGR01194 cyc_pep_trnsptr cycl 96.7 0.0014 3.1E-08 71.5 4.5 48 31-86 358-406 (555)
415 PRK09984 phosphonate/organopho 96.7 0.0014 3.1E-08 64.4 4.1 37 30-69 19-55 (262)
416 PRK09270 nucleoside triphospha 96.7 0.0013 2.9E-08 63.6 3.8 28 42-69 31-58 (229)
417 PRK11147 ABC transporter ATPas 96.7 0.0013 2.8E-08 73.0 4.3 44 30-81 18-61 (635)
418 PRK09536 btuD corrinoid ABC tr 96.7 0.0015 3.3E-08 68.9 4.6 51 29-87 17-68 (402)
419 PRK13549 xylose transporter AT 96.7 0.0014 3E-08 70.7 4.3 51 30-86 20-71 (506)
420 PRK11819 putative ABC transpor 96.7 0.0015 3.2E-08 71.5 4.5 44 30-81 22-65 (556)
421 COG1123 ATPase components of v 96.7 0.003 6.5E-08 68.8 6.8 49 29-85 305-354 (539)
422 PLN02318 phosphoribulokinase/u 96.7 0.0016 3.4E-08 71.8 4.6 36 43-78 64-100 (656)
423 PRK14268 phosphate ABC transpo 96.7 0.0015 3.3E-08 64.1 4.3 54 30-86 27-81 (258)
424 PRK15439 autoinducer 2 ABC tra 96.7 0.0015 3.2E-08 70.6 4.5 49 30-86 26-75 (510)
425 cd02026 PRK Phosphoribulokinas 96.7 0.0013 2.9E-08 65.8 3.8 32 46-77 1-35 (273)
426 COG4181 Predicted ABC-type tra 96.7 0.0017 3.7E-08 61.5 4.3 43 31-81 26-68 (228)
427 TIGR03269 met_CoM_red_A2 methy 96.7 0.0017 3.7E-08 70.2 4.9 46 30-81 15-60 (520)
428 COG4136 ABC-type uncharacteriz 96.7 0.0019 4.1E-08 60.0 4.4 42 31-75 18-59 (213)
429 PRK14249 phosphate ABC transpo 96.7 0.0016 3.5E-08 63.5 4.2 37 30-69 19-55 (251)
430 PRK14246 phosphate ABC transpo 96.7 0.0018 3.9E-08 63.8 4.6 36 30-68 25-60 (257)
431 PRK14260 phosphate ABC transpo 96.7 0.0019 4E-08 63.5 4.6 37 30-69 22-58 (259)
432 cd02029 PRK_like Phosphoribulo 96.7 0.0013 2.9E-08 66.0 3.5 33 46-78 1-38 (277)
433 KOG3347 Predicted nucleotide k 96.7 0.0015 3.3E-08 60.3 3.6 35 42-76 5-39 (176)
434 PRK04195 replication factor C 96.7 0.012 2.5E-07 63.5 11.0 35 44-78 39-73 (482)
435 PRK11288 araG L-arabinose tran 96.7 0.0015 3.3E-08 70.3 4.1 48 31-86 269-317 (501)
436 PRK10261 glutathione transport 96.7 0.0017 3.8E-08 72.0 4.6 50 31-88 340-390 (623)
437 COG1122 CbiO ABC-type cobalt t 96.7 0.0017 3.7E-08 63.8 4.1 51 29-87 18-69 (235)
438 TIGR03269 met_CoM_red_A2 methy 96.7 0.0018 3.8E-08 70.0 4.6 43 31-81 300-342 (520)
439 COG2274 SunT ABC-type bacterio 96.7 0.0017 3.7E-08 73.2 4.5 49 30-86 488-537 (709)
440 PLN02796 D-glycerate 3-kinase 96.7 0.002 4.4E-08 66.7 4.7 27 43-69 99-125 (347)
441 PRK10790 putative multidrug tr 96.7 0.0018 3.9E-08 71.0 4.6 48 31-86 357-405 (592)
442 PRK10982 galactose/methyl gala 96.7 0.0016 3.5E-08 69.8 4.2 49 30-86 13-62 (491)
443 PF13401 AAA_22: AAA domain; P 96.7 0.0015 3.2E-08 56.5 3.2 28 42-69 2-29 (131)
444 TIGR00455 apsK adenylylsulfate 96.6 0.0018 3.8E-08 60.3 3.9 27 42-68 16-42 (184)
445 KOG0058 Peptide exporter, ABC 96.6 0.0022 4.8E-08 71.4 5.1 42 31-80 484-525 (716)
446 PF13521 AAA_28: AAA domain; P 96.6 0.0016 3.5E-08 59.3 3.5 26 47-73 2-27 (163)
447 TIGR02203 MsbA_lipidA lipid A 96.6 0.0021 4.6E-08 69.8 5.0 42 31-80 348-389 (571)
448 PRK14265 phosphate ABC transpo 96.6 0.0019 4.2E-08 64.2 4.2 36 30-68 35-70 (274)
449 PRK05342 clpX ATP-dependent pr 96.6 0.0018 3.9E-08 68.6 4.2 35 44-78 108-142 (412)
450 COG4167 SapF ABC-type antimicr 96.6 0.0022 4.8E-08 61.3 4.3 33 33-68 31-63 (267)
451 PRK11288 araG L-arabinose tran 96.6 0.0019 4.1E-08 69.6 4.3 49 30-86 19-68 (501)
452 cd03217 ABC_FeS_Assembly ABC-t 96.6 0.0019 4.2E-08 61.1 3.9 52 30-87 15-67 (200)
453 PRK03695 vitamin B12-transport 96.6 0.0019 4.1E-08 63.2 4.0 48 30-86 11-59 (248)
454 COG1125 OpuBA ABC-type proline 96.6 0.0022 4.7E-08 64.0 4.4 51 28-86 14-65 (309)
455 PRK14243 phosphate transporter 96.6 0.002 4.4E-08 63.6 4.2 36 30-68 25-60 (264)
456 PRK13657 cyclic beta-1,2-gluca 96.6 0.0021 4.5E-08 70.5 4.7 48 31-86 351-399 (588)
457 TIGR03719 ABC_ABC_ChvD ATP-bin 96.6 0.002 4.4E-08 70.2 4.6 36 30-68 20-55 (552)
458 cd03237 ABC_RNaseL_inhibitor_d 96.6 0.0018 4E-08 63.6 3.8 46 31-81 10-57 (246)
459 TIGR01842 type_I_sec_PrtD type 96.6 0.0021 4.5E-08 69.9 4.6 49 30-86 333-382 (544)
460 PRK10261 glutathione transport 96.6 0.0021 4.5E-08 71.4 4.6 37 30-69 31-67 (623)
461 PRK10636 putative ABC transpor 96.6 0.0021 4.4E-08 71.7 4.6 42 32-81 329-370 (638)
462 PRK10982 galactose/methyl gala 96.6 0.0018 4E-08 69.4 4.0 49 31-87 264-313 (491)
463 PRK14271 phosphate ABC transpo 96.6 0.0022 4.8E-08 63.9 4.3 36 30-68 36-71 (276)
464 TIGR02633 xylG D-xylose ABC tr 96.6 0.002 4.4E-08 69.2 4.3 51 30-86 16-67 (500)
465 PF13189 Cytidylate_kin2: Cyti 96.6 0.0045 9.9E-08 57.9 6.1 31 46-76 1-31 (179)
466 cd03270 ABC_UvrA_I The excisio 96.6 0.0017 3.6E-08 62.9 3.3 32 28-62 8-39 (226)
467 TIGR01846 type_I_sec_HlyB type 96.6 0.0023 4.9E-08 71.7 4.8 48 31-86 473-521 (694)
468 TIGR02881 spore_V_K stage V sp 96.6 0.0034 7.3E-08 62.0 5.4 26 43-68 41-66 (261)
469 TIGR03719 ABC_ABC_ChvD ATP-bin 96.6 0.002 4.4E-08 70.2 4.2 43 31-81 338-380 (552)
470 PLN02422 dephospho-CoA kinase 96.5 0.0024 5.1E-08 62.8 4.2 33 45-78 2-34 (232)
471 COG1224 TIP49 DNA helicase TIP 96.5 0.0028 6E-08 65.8 4.8 41 42-82 63-105 (450)
472 PRK13549 xylose transporter AT 96.5 0.0023 4.9E-08 69.0 4.5 49 30-86 277-327 (506)
473 PLN03232 ABC transporter C fam 96.5 0.0019 4.1E-08 78.4 4.2 50 31-88 1252-1302(1495)
474 PRK03333 coaE dephospho-CoA ki 96.5 0.0019 4E-08 68.1 3.7 33 45-78 2-34 (395)
475 PRK14258 phosphate ABC transpo 96.5 0.0024 5.1E-08 62.9 4.2 37 30-69 22-58 (261)
476 PRK11889 flhF flagellar biosyn 96.5 0.0024 5.2E-08 67.5 4.3 36 42-77 239-279 (436)
477 PRK11147 ABC transporter ATPas 96.5 0.0024 5.3E-08 70.9 4.6 45 31-83 335-379 (635)
478 PRK12723 flagellar biosynthesi 96.5 0.0023 5E-08 67.3 4.2 27 42-68 172-198 (388)
479 CHL00181 cbbX CbbX; Provisiona 96.5 0.022 4.7E-07 57.6 11.0 26 43-68 58-83 (287)
480 PLN00020 ribulose bisphosphate 96.5 0.0025 5.4E-08 66.7 4.3 43 41-83 145-187 (413)
481 PF06309 Torsin: Torsin; Inte 96.5 0.0091 2E-07 53.5 7.3 70 40-131 49-118 (127)
482 PRK15064 ABC transporter ATP-b 96.5 0.0025 5.3E-08 69.2 4.5 43 31-81 335-377 (530)
483 PRK12726 flagellar biosynthesi 96.5 0.0027 5.8E-08 66.8 4.5 37 42-78 204-245 (407)
484 cd01131 PilT Pilus retraction 96.5 0.002 4.4E-08 61.1 3.4 24 46-69 3-26 (198)
485 KOG3308 Uncharacterized protei 96.5 0.0026 5.6E-08 61.3 4.0 39 43-83 3-42 (225)
486 TIGR00382 clpX endopeptidase C 96.5 0.0026 5.6E-08 67.5 4.5 33 45-77 117-149 (413)
487 COG4555 NatA ABC-type Na+ tran 96.5 0.0024 5.2E-08 61.8 3.8 45 29-81 16-60 (245)
488 PRK10751 molybdopterin-guanine 96.5 0.0021 4.4E-08 60.5 3.2 27 43-69 5-31 (173)
489 TIGR01192 chvA glucan exporter 96.5 0.0026 5.7E-08 69.9 4.6 47 31-85 351-398 (585)
490 PRK11819 putative ABC transpor 96.5 0.0026 5.6E-08 69.5 4.5 44 31-82 340-383 (556)
491 PRK15439 autoinducer 2 ABC tra 96.5 0.0025 5.4E-08 68.9 4.2 50 30-87 278-328 (510)
492 cd01130 VirB11-like_ATPase Typ 96.5 0.0025 5.3E-08 59.8 3.7 28 42-69 23-50 (186)
493 COG4088 Predicted nucleotide k 96.5 0.0036 7.8E-08 60.8 4.8 28 45-72 2-29 (261)
494 COG0645 Predicted kinase [Gene 96.5 0.0083 1.8E-07 56.3 7.0 34 45-78 2-35 (170)
495 PLN03130 ABC transporter C fam 96.5 0.0024 5.2E-08 78.0 4.5 49 31-87 1255-1304(1622)
496 COG1127 Ttg2A ABC-type transpo 96.5 0.0029 6.3E-08 62.5 4.2 44 29-80 22-65 (263)
497 PRK14275 phosphate ABC transpo 96.5 0.0028 6.1E-08 63.5 4.2 35 30-67 54-88 (286)
498 cd03236 ABC_RNaseL_inhibitor_d 96.5 0.0026 5.7E-08 62.9 3.9 34 42-80 24-57 (255)
499 COG0466 Lon ATP-dependent Lon 96.5 0.0025 5.5E-08 70.9 4.1 38 40-77 346-383 (782)
500 TIGR00957 MRP_assoc_pro multi 96.5 0.0026 5.7E-08 77.3 4.7 51 30-88 1301-1352(1522)
No 1
>PLN02840 tRNA dimethylallyltransferase
Probab=100.00 E-value=2e-103 Score=814.21 Aligned_cols=401 Identities=74% Similarity=1.235 Sum_probs=359.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFED 121 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~ 121 (455)
.++++|+|+||||||||+||..||++++++|||+||+|||++++|||+||+.+|+.+|||||+|+++|++.||+++|+++
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~ 98 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDD 98 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCccccccCCC
Q 012837 122 ARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAAN 201 (455)
Q Consensus 122 a~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~A~~i~~n 201 (455)
|.++|++|+++|++||||||||+|++||++|.+.+|+.+++++.++++++.++...++|+.++..+++..||.|++||||
T Consensus 99 A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~DP~A~~i~pn 178 (421)
T PLN02840 99 ARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGDPKARSLPRN 178 (421)
T ss_pred HHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccCcHHHhcCCC
Confidence 99999999999999999999999999999999999999999999988888776444678888888888889977899999
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHH
Q 012837 202 DWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDL 281 (455)
Q Consensus 202 d~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~rI~~ 281 (455)
|++||+|||||++.||+|+|+|+.++++|.++......+...++.. ....+.+|++++|+|++||++||+||+.
T Consensus 179 D~~Ri~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~y~~~~i~L~~dR~~Ly~RI~~ 252 (421)
T PLN02840 179 DWYRLRRSLEIIKSSGSPPSAFSLPYDSFREQLVTEDTDSSLEDGS------SAETELDYDFLCFFLSSPRLDLYRSIDL 252 (421)
T ss_pred cHHHHHHHHHHHHHHCCCHHHhhccccchhhccccccccccccccc------cccCCCCCCeEEEEeCCCHHHHHHHHHH
Confidence 9999999999999999999998543334444422111111000000 0011346999999999999999999999
Q ss_pred HHHHhccCCCChHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhHHHHH
Q 012837 282 RCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTW 361 (455)
Q Consensus 282 Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~~~~~~l~~i~~~TR~yAKRQ~TW 361 (455)
||++||++++||++||++|++.|+.++.++++|+|||||+++||..|+..+|+++++++.++++.++++||||||||+||
T Consensus 253 Rvd~Ml~~~~GLleEV~~Ll~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~G~~s~ee~~~~~e~i~~~TRqYAKRQ~TW 332 (421)
T PLN02840 253 RCEEMLAGTNGILSEASWLLDLGLLPNSNSATRAIGYRQAMEYLLQCRQNGGESSPQEFLAFLSKFQTASRNFAKRQMTW 332 (421)
T ss_pred HHHHHHHcccCHHHHHHHHHHcCCCccccchHHHhcHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998889999999999998877656899999999999999999888899999999889999999999999999999
Q ss_pred hcCCCCceEecCCCcHHHHHHHHHHHhhccCCccccCcccccccccCChHHHhhhccccccccccccCccchhHHHHHHh
Q 012837 362 FRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIRRDSSSSREVSELKSYRTRNRHFISRGDCCNILDWIKR 441 (455)
Q Consensus 362 fR~~~~~~w~d~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~y~~~~~~~~~~~~~~~~l~~~~~ 441 (455)
||+++.++|+|++.+.++++++|.++|+++++.++||++++||+|.+|++|.++||+||++||||++++||++||+|||+
T Consensus 333 FR~~~~~~w~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (421)
T PLN02840 333 FRNEPIYHWLDASQPLEKILQFIYDAYHSRTARVVVPESLRMKKEVSCSRESSELKTYRSKNRHFVSREDCSHVLEWIRR 412 (421)
T ss_pred hCCCCCCeEecCCCCHHHHHHHHHHHHhcCCCCccCchhhhhhhhhhhHHHHHHHhhhhcccceecchhhhHHHHHHHHH
Confidence 99999999999876789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccc
Q 012837 442 TQGKTCE 448 (455)
Q Consensus 442 ~~~~~~~ 448 (455)
||++..+
T Consensus 413 ~~~~~~~ 419 (421)
T PLN02840 413 TQCKASA 419 (421)
T ss_pred hccCccc
Confidence 9999864
No 2
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=1.1e-80 Score=622.75 Aligned_cols=296 Identities=32% Similarity=0.510 Sum_probs=263.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFED 121 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~ 121 (455)
+.+++|+|+||||||||+||..||++ +++|||+||+||||+|+||||||+.+|+++|||||+|+++|.+.||+++|.++
T Consensus 2 ~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~ 80 (300)
T PRK14729 2 KENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKE 80 (300)
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHH
Confidence 34679999999999999999999999 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCcc-ccccCC
Q 012837 122 ARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAA 200 (455)
Q Consensus 122 a~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~-A~~i~~ 200 (455)
|.++|++|+++|++||||||||+|++||++|+...|+.++++|..+.+.+.. .++ +.++..|...||. |++|||
T Consensus 81 a~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~~~----~g~-~~l~~~L~~~DP~~A~~i~p 155 (300)
T PRK14729 81 ALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLFTL----KGK-SYLLEELKRVDFIRYESINK 155 (300)
T ss_pred HHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh----cCH-HHHHHHHHhcCHHHHhhCCc
Confidence 9999999999999999999999999999999988888899888877655543 233 4566778889995 889999
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHH
Q 012837 201 NDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280 (455)
Q Consensus 201 nd~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~rI~ 280 (455)
||.+|+.|||||+..||+++|+|+.. .. ..|++++|+|++||++||+||+
T Consensus 156 nd~~Ri~RALEv~~~tG~~~s~~~~~-----------------------------~~-~~~~~~~i~l~~~r~~L~~rI~ 205 (300)
T PRK14729 156 NDIYRIKRSLEVYYQTGIPISQFLKK-----------------------------QN-MFKNILAIGLKRPMEEMKSRII 205 (300)
T ss_pred CCHHHHHHHHHHHHHhCCChHhhhhc-----------------------------cC-CCCCeEEEEeCCCHHHHHHHHH
Confidence 99999999999999999999998310 01 2488999999999999999999
Q ss_pred HHHHHhccCCCChHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 012837 281 LRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLT 360 (455)
Q Consensus 281 ~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~~~~~~l~~i~~~TR~yAKRQ~T 360 (455)
+||++||+ +||++||+.|++.|+.. ..+++|||||||+++||. +|+++++++ ++.++++||||||||+|
T Consensus 206 ~Rv~~Ml~--~GlieEv~~l~~~~~~~-~~~~~~aIGYkE~~~yl~-----~g~~~l~e~---~e~i~~~Tr~yAKRQ~T 274 (300)
T PRK14729 206 SRVNNMID--CGLLSEIKSLLGKGYNE-NTPAFKGIGYREFLLWKS-----RPCYMLNDI---INLIVKNSFLYVKRQMT 274 (300)
T ss_pred HHHHHHHH--CCHHHHHHHHHhcCCCC-CCCcceeEcHHHHHHHHh-----cCCCCHHHH---HHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999887644 458999999999999994 378888765 89999999999999999
Q ss_pred HhcCCCCceEecCCCcHHHHHHHH
Q 012837 361 WFRNERIYHWLNAARPLENVLNYI 384 (455)
Q Consensus 361 WfR~~~~~~w~d~~~~~~~i~~~i 384 (455)
|||+++.++|+|.+...+.++..|
T Consensus 275 Wfr~~~~~~w~~~~~~~~~~~~~i 298 (300)
T PRK14729 275 FFAKIPNVLWFHPDDDLKNILDLI 298 (300)
T ss_pred HcCCCCCCeeecCCCCHHHHHHHH
Confidence 999999999999764455555443
No 3
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-78 Score=604.02 Aligned_cols=302 Identities=44% Similarity=0.688 Sum_probs=270.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDA 122 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a 122 (455)
++++|+|+||||||||.||+.||+++|+||||+||||||||||||||||+.+|+++||||++|+++|.+.||+.+|..+|
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a 81 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDA 81 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCcc-ccccCCC
Q 012837 123 RHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAAN 201 (455)
Q Consensus 123 ~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~-A~~i~~n 201 (455)
.+.|++|.++||+||+|||||+|++||+.|.+..|..++++|..++.++... ++ ..++..+...||. |++||||
T Consensus 82 ~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~----g~-~~L~~~L~~~Dp~~a~~i~pn 156 (308)
T COG0324 82 LAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAEL----GN-DALHAELKKIDPEAAAKIHPN 156 (308)
T ss_pred HHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc----CH-HHHHHHHHhhCHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999998887766642 44 4456667888996 7899999
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHH
Q 012837 202 DWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDL 281 (455)
Q Consensus 202 d~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~rI~~ 281 (455)
|.+|+.|||||+..||+|+|+++.. + .....+|++..|+|.++|+.||+||+.
T Consensus 157 D~~Ri~RALEv~~~tGk~~s~~~~~------~---------------------~~~~~~~~~~~~~l~~~r~~L~~rI~~ 209 (308)
T COG0324 157 DPQRIIRALEVYYLTGKPISELQKR------S---------------------RPILEPYDILIIALAADREVLYERINR 209 (308)
T ss_pred chhHHHHHHHHHHHHCCCHHHHhhc------c---------------------cCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 9999999999999999999998521 0 123347999999999999999999999
Q ss_pred HHHHhccCCCChHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhHHHHH
Q 012837 282 RCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTW 361 (455)
Q Consensus 282 Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~~~~~~l~~i~~~TR~yAKRQ~TW 361 (455)
|||+|++ +||++||++|++.|+.++ .+++|+|||||+.+||. |.++.+++ ++.++.+||||||||+||
T Consensus 210 R~d~Ml~--~Gli~EV~~L~~~g~~~~-~~~~~~iGy~e~~~yl~------g~~~~~ea---~~~~~~~TRqyAKRQ~TW 277 (308)
T COG0324 210 RVDAMLE--QGLIEEVKALYARGLHLD-LPAMQAIGYKEILAYLD------GGISLEEA---IERIKTATRQYAKRQLTW 277 (308)
T ss_pred HHHHHHH--ccHHHHHHHHHhccCCcc-chHHHhcCHHHHHHHHh------CCCCHHHH---HHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999986665 58999999999999997 77888765 799999999999999999
Q ss_pred hcCCCCceEecCCCc-HHHHHHHHHHHh
Q 012837 362 FRNERIYHWLNAARP-LENVLNYIITAY 388 (455)
Q Consensus 362 fR~~~~~~w~d~~~~-~~~i~~~i~~~~ 388 (455)
|||+..++|++...+ ..+.+..|.+.+
T Consensus 278 fr~~~~~~w~~~~~~~~~~~~~~v~~~~ 305 (308)
T COG0324 278 FRNQLGVHWLDSESPDTLDAAKSVEKAL 305 (308)
T ss_pred hccCcccceeccCCcchHHHHHHHHHHh
Confidence 999999999998754 223444555543
No 4
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=5.4e-77 Score=593.10 Aligned_cols=286 Identities=42% Similarity=0.658 Sum_probs=259.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHHHHH
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHA 125 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a~~~ 125 (455)
+|+|+||||||||+||..||++++++|||+||+||||+|+|+|+||+++|+.+++|||+|+++|.+.||+++|...+.++
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~ 80 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNA 80 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCcc-ccccCCCcHH
Q 012837 126 TKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWY 204 (455)
Q Consensus 126 i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~-A~~i~~nd~~ 204 (455)
|++++++|++||||||||+|++||++|....|+.++++|+.+++.+.. .+++ .++..|...||. |++|||||.+
T Consensus 81 i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~~----~g~~-~l~~~L~~~DP~~a~~i~~nd~~ 155 (287)
T TIGR00174 81 IADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAEE----QGWD-FLYNELKKVDPVAAAKIHPNDTR 155 (287)
T ss_pred HHHHHhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH----cCHH-HHHHHHHhcCHHHHHhcCCccHH
Confidence 999999999999999999999999999988888888888887765543 3454 456667788995 7899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q 012837 205 RLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCE 284 (455)
Q Consensus 205 Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~rI~~Rvd 284 (455)
|+.|||||+..||+++|+|.. ++ ....+|++++|||++||++||+||++||+
T Consensus 156 Ri~RALEi~~~tG~~~s~~~~------~~----------------------~~~~~~~~~~i~l~~dr~~L~~rI~~Rv~ 207 (287)
T TIGR00174 156 RVQRALEVFYATGKPPSELFK------EQ----------------------KIELFYDAVQIGLASSREPLHQRIEQRVH 207 (287)
T ss_pred HHHHHHHHHHHHCCChHHHhh------cc----------------------CCCCCCCeEEEEECCCHHHHHHHHHHHHH
Confidence 999999999999999999732 11 12246899999999999999999999999
Q ss_pred HhccCCCChHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q 012837 285 DMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRN 364 (455)
Q Consensus 285 ~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~~~~~~l~~i~~~TR~yAKRQ~TWfR~ 364 (455)
+|++ +||++||+.|++.+..++ .+++|||||||+++||. |+++.+++ ++.++++||||||||+||||+
T Consensus 208 ~Mi~--~Gl~eEv~~l~~~~~~~~-~~~~~aIGYkE~~~~l~------g~~~~~e~---ie~i~~~Tr~yAKRQ~TWfR~ 275 (287)
T TIGR00174 208 DMLE--SGLLAEVKALYAQYDLCD-LPSIQAIGYKEFLLYLE------GTVSLEDA---IERIKCNTRQYAKRQLTWFRK 275 (287)
T ss_pred HHHH--CCHHHHHHHHHhccCCcC-CchhhhccHHHHHHHHc------CCCCHHHH---HHHHHHHHHHHHHHHHHHhCC
Confidence 9999 999999999999876543 58999999999999996 88998765 899999999999999999999
Q ss_pred CCCceEecCCCc
Q 012837 365 ERIYHWLNAARP 376 (455)
Q Consensus 365 ~~~~~w~d~~~~ 376 (455)
++.++|+|+++|
T Consensus 276 ~~~~~~~~~~~~ 287 (287)
T TIGR00174 276 WSDVLWLDSTDP 287 (287)
T ss_pred CCCCEEeCCCCC
Confidence 999999998754
No 5
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=100.00 E-value=1.1e-74 Score=582.31 Aligned_cols=301 Identities=46% Similarity=0.757 Sum_probs=269.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFED 121 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~ 121 (455)
.++++|+|+||||||||+||..||++++++|||+||+|||++++|+|+||+++|+.+|+|||+|+++|.+.|++++|.++
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~ 81 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRD 81 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCcc-ccccCC
Q 012837 122 ARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAA 200 (455)
Q Consensus 122 a~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~-A~~i~~ 200 (455)
|.+.|++++++|++||||||||+|+++|+.|....|+.++++|..++....+ .+++ .++..|...||. |++|||
T Consensus 82 a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~~----~g~~-~l~~~L~~~Dp~~a~~i~~ 156 (307)
T PRK00091 82 ALAAIADILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAAE----EGWE-ALHAELAEIDPEAAARIHP 156 (307)
T ss_pred HHHHHHHHHhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHh----cCHH-HHHHHHHhcCHHHHhhcCC
Confidence 9999999999999999999999999999999988888888888877654433 3444 466677889995 789999
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHH
Q 012837 201 NDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280 (455)
Q Consensus 201 nd~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~rI~ 280 (455)
||.+|+.|||||+..||+++|+|.. + ....+|++++|||++||++||+||+
T Consensus 157 ~d~~Ri~RAlEi~~~tG~~~s~~~~-------~----------------------~~~~~~~~~~~~l~~dr~~L~~rI~ 207 (307)
T PRK00091 157 NDPQRIIRALEVYELTGKPLSELQK-------R----------------------GKPPPYRVLIIGLDPDREELYERIN 207 (307)
T ss_pred CCCchhHHHHHHHHHHCCChhhhhh-------c----------------------cccCCCCeEEEEEcCCHHHHHHHHH
Confidence 9999999999999999999999831 0 0124689999999999999999999
Q ss_pred HHHHHhccCCCChHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 012837 281 LRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLT 360 (455)
Q Consensus 281 ~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~~~~~~l~~i~~~TR~yAKRQ~T 360 (455)
+||++||+ +||++||+.|++.|+.++ .+++|||||||+++||. |+++++++ ++.++++||||||||+|
T Consensus 208 ~Rv~~Ml~--~Gl~eEv~~l~~~~~~~~-~~~~~aIGykE~~~yl~------g~~s~~e~---~e~i~~~Tr~yAKRQ~T 275 (307)
T PRK00091 208 QRVDQMLE--QGLLEEVRALLARGYLPD-LPAMRAIGYKELLAYLD------GEISLEEA---IEKIKQATRQYAKRQLT 275 (307)
T ss_pred HHHHHHHH--CcHHHHHHHHHHcCCCCC-CccceeecHHHHHHHHc------CCCCHHHH---HHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999876554 58999999999999996 89998765 89999999999999999
Q ss_pred HhcCCCCceEecCC--CcHHHHHHHHHHHh
Q 012837 361 WFRNERIYHWLNAA--RPLENVLNYIITAY 388 (455)
Q Consensus 361 WfR~~~~~~w~d~~--~~~~~i~~~i~~~~ 388 (455)
|||++..++|+|.+ ...+++++.|...+
T Consensus 276 Wfr~~~~~~w~~~~~~~~~~~i~~~i~~~~ 305 (307)
T PRK00091 276 WFRRQPDIHWLDLSPEEALEEILRLLEAKL 305 (307)
T ss_pred HhCCCCCCeeecCCCchHHHHHHHHHHHhh
Confidence 99999999999943 34677777776654
No 6
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=1.7e-71 Score=584.02 Aligned_cols=305 Identities=26% Similarity=0.410 Sum_probs=251.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFED 121 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~ 121 (455)
.++++|+|+||||||||+||..||++++++|||+|||||||||+|+||||+.+|+++|||||+|+++|++.|++++|..+
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~ 99 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDH 99 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccEEechhhHHHHHHHhCCCC--CCCC--------CHHHHHHHH--HHHHHHHhcCChHHHHHHHHH
Q 012837 122 ARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPD--VPKA--------SPEIIAEVN--SELADLQRDGDWYAAVEFVVK 189 (455)
Q Consensus 122 a~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~--~p~~--------~~~ir~~~~--~~l~~~~~~~~~~~~l~~ll~ 189 (455)
|.++|++|+++|++||||||||+|++||++|... .|.. ++.+|..+. ..+. ..++ +.++..|.
T Consensus 100 A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r~~l~~~~~~~----~~g~-~~l~~~L~ 174 (468)
T PLN02748 100 AVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGLG----NDDE-DHGYELLK 174 (468)
T ss_pred HHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHHHHHHHHHHHH----hcCH-HHHHHHHH
Confidence 9999999999999999999999999999999743 3321 244555542 2222 2233 44566678
Q ss_pred cCCcc-ccccCCCcHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEE
Q 012837 190 AGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFL 268 (455)
Q Consensus 190 ~~DP~-A~~i~~nd~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L 268 (455)
..||. |++|||||.+||.||||||..||+++|++.. ++..... ......+|++++|||
T Consensus 175 ~vDP~~A~rihpnD~rRI~RALEI~~~TG~~~S~~~~------~~~~~~~---------------~~~~~~~~~~~~i~l 233 (468)
T PLN02748 175 ELDPVAANRIHPNNHRKINRYLELYATTGVLPSKLYQ------GKAAENW---------------GRISNSRFDCCFICV 233 (468)
T ss_pred hhCHHHHhhcCCccHHHHHHHHHHHHHHCcCHHHHhh------hcccccc---------------ccccCCCCceEEEEe
Confidence 88995 8899999999999999999999999999742 2210000 000134689999999
Q ss_pred eCCHHHHHHHHHHHHHHhccCCCChHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhc--CCCC-----------
Q 012837 269 SSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQ--GGTS----------- 335 (455)
Q Consensus 269 ~~~Re~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~--~g~~----------- 335 (455)
++||++||+||++||+.||+ +||++||+.|++.+... ..+++||||||||++||...... .|++
T Consensus 234 ~~~r~~L~~RI~~Rvd~Mle--~GlleEv~~l~~~~~~~-~~~~~qaIGykE~~~yL~~~~~~~~~g~~~~~~~~~~~~~ 310 (468)
T PLN02748 234 DADTAVLDRYVNQRVDCMID--AGLLDEVYDIYDPGADY-TRGLRQAIGVREFEDFLRLYLSRNENGELTSSSNNDKVMK 310 (468)
T ss_pred CCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHhcCCCC-CcccceeEcHHHHHHHHHhcccccccccccccccccchhh
Confidence 99999999999999999999 99999999999876432 34689999999999999743221 1332
Q ss_pred ----------CHH----HHHHHHHHHHHHHHHHHhHHHHHhcCC-----CCceEecCCC
Q 012837 336 ----------STG----EFYAFLAEFQKASRNFAKRQLTWFRNE-----RIYHWLNAAR 375 (455)
Q Consensus 336 ----------s~~----~~~~~l~~i~~~TR~yAKRQ~TWfR~~-----~~~~w~d~~~ 375 (455)
..+ .+.++++.++.+||||||||+|||++. ..++|+|+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~l~eaie~ik~~Tr~yAKRQ~tw~~rl~~~~~~~i~~lD~t~ 369 (468)
T PLN02748 311 ENSRKILNFPHDDKLKILLDEAIDQVKLNTRRLVRRQKRRLHRLNTVFGWNIHYIDATE 369 (468)
T ss_pred hhhhccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCeeEeechh
Confidence 111 256789999999999999999999984 4679999764
No 7
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=100.00 E-value=2.6e-68 Score=523.31 Aligned_cols=251 Identities=45% Similarity=0.781 Sum_probs=210.9
Q ss_pred cceecccccccCCCCccccccCccccccccCcccccchhhHHHHHHHHHHHHHhcCCccEEechhhHHHHHHHhCCCCCC
Q 012837 78 VQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVP 157 (455)
Q Consensus 78 ~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p 157 (455)
|||||||+||||||+.+|+++|||||+|+++|++.||+++|.++|.++|++|+++|++||||||||+|++||++|...+|
T Consensus 1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~~p 80 (253)
T PF01715_consen 1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLADIP 80 (253)
T ss_dssp STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS--TS
T ss_pred CCccCCCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhhhc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCcc-ccccCCCcHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCC
Q 012837 158 KASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDS 236 (455)
Q Consensus 158 ~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~-A~~i~~nd~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~ 236 (455)
..++++|..+++++.. .++ ..++..|...||. |++|||||.+|+.|||||+..||+++|++... +
T Consensus 81 ~~~~~~r~~~~~~~~~----~~~-~~l~~~L~~~DP~~A~~i~~nd~~Ri~RALei~~~tG~~~s~~~~~------~--- 146 (253)
T PF01715_consen 81 EVDPELRAELRAELEE----EGN-EELYEELKEVDPEAAAKIHPNDRRRIIRALEIYELTGKPPSEWQKK------Q--- 146 (253)
T ss_dssp SSHHHHHHHHHHHHHH----SCH-HHHHHHHHHC-HHHHCTS-TT-HHHHHHHHHHHHHHSS-HHHHHHC------H---
T ss_pred cccHHHHHHHHHHHHh----ccH-HHHHHHHHhhCcHhhhcCCCCcHHHHHHHHHHHHhcCCChhHhhhc------c---
Confidence 9999998888777654 344 4566667888995 78999999999999999999999999998521 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHhccCCCChHHHHHHHHHcCCCCCCccccccc
Q 012837 237 SETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAI 316 (455)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aI 316 (455)
...++|++++|||++||++||+||+.||++||+ +||++||+.|++.|..++ .+++|||
T Consensus 147 -------------------~~~~~~~~~~i~L~~~r~~L~~RI~~Rvd~Ml~--~GlleEv~~L~~~~~~~~-~~~~~aI 204 (253)
T PF01715_consen 147 -------------------KPPPRYDFLVIGLDRDREELYERINKRVDEMLE--QGLLEEVRALLERGLPPD-LPAMQAI 204 (253)
T ss_dssp -------------------HHCBSSEEEEEEEESSHHHHHHHHHHHHHHHHH--TTHHHHHHHHHHTTGGTT-SCGGGST
T ss_pred -------------------cccccCCeEEEEeCCCHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHcCCCCc-chhceee
Confidence 124579999999999999999999999999999 999999999999985554 5899999
Q ss_pred cHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCceEecC
Q 012837 317 GYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNA 373 (455)
Q Consensus 317 GYkE~~~yL~~~~~~~g~~s~~~~~~~l~~i~~~TR~yAKRQ~TWfR~~~~~~w~d~ 373 (455)
||||+++||. |+++.+++ ++.++++||||||||+|||||+..++|+|+
T Consensus 205 GYkE~~~~l~------g~~~~~e~---~e~i~~~TrqyAKRQ~TWfr~~~~~~w~d~ 252 (253)
T PF01715_consen 205 GYKEFIDYLE------GEISLEEA---IERIKTNTRQYAKRQRTWFRNQPNIHWIDI 252 (253)
T ss_dssp THHHHHHHHT------TSSCHHHH---HHHHHHHHHHHHHHHHHHHHTTSSEEEEET
T ss_pred ehHHHHHhhc------CCCCHHHH---HHHHHHHHHHHHHHHHHHhCCCCCCeeeeC
Confidence 9999999996 88887765 899999999999999999999999999986
No 8
>PLN02165 adenylate isopentenyltransferase
Probab=100.00 E-value=2.5e-58 Score=465.65 Aligned_cols=246 Identities=28% Similarity=0.460 Sum_probs=209.7
Q ss_pred cCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCccc-ccchhhH
Q 012837 40 SSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCE-DYSVGKF 118 (455)
Q Consensus 40 ~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~-~~sv~~f 118 (455)
.+.++++|+|+||||||||+||..||+.++++|||+||+|||+|++|+|+||+.+|+.+++||+++.+++.+ .|++.+|
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F 118 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEF 118 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred HHHHHHHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCcccccc
Q 012837 119 FEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSL 198 (455)
Q Consensus 119 ~~~a~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~A~~i 198 (455)
...+.++|++|+++|++||+|||||+|++||++|.. ||..
T Consensus 119 ~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~-------------------------------------dpe~--- 158 (334)
T PLN02165 119 RSLASLSISEITSRQKLPIVAGGSNSFIHALLADRF-------------------------------------DPEI--- 158 (334)
T ss_pred HHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCC-------------------------------------CCcc---
Confidence 999999999999999999999999999999999852 2211
Q ss_pred CCCcHHHHHHHHHHHHHcCCC-CCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHH
Q 012837 199 AANDWYRLRRSLEIIKSTGSP-PSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYR 277 (455)
Q Consensus 199 ~~nd~~Rl~RaLEi~~~tG~~-~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~ 277 (455)
+| ..||++ +|++ .+|++++|||++||++||+
T Consensus 159 ~p-------------~~tg~~~~s~~-----------------------------------~~~~~~~i~l~~dr~~L~~ 190 (334)
T PLN02165 159 YP-------------FSSGSSLISSD-----------------------------------LRYDCCFIWVDVSEPVLFE 190 (334)
T ss_pred Ch-------------hhcCCCccccc-----------------------------------cCCCeEEEEECCCHHHHHH
Confidence 11 257766 4331 2478889999999999999
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHcCCCCC-CccccccccHHHHHHHHHHhhhcC--CCCC---HHHHHHHHHHHHHHH
Q 012837 278 SIDLRCEDMLPGSDGILSEAAWLLDEGLLPN-SNSATRAIGYRQAMEYLLRCRQQG--GTSS---TGEFYAFLAEFQKAS 351 (455)
Q Consensus 278 rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~-~~~a~~aIGYkE~~~yL~~~~~~~--g~~s---~~~~~~~l~~i~~~T 351 (455)
||++||++||+ +||++||+.|++.++.++ ..+++|||||||+++||..+...+ |+++ ...+.++++.++++|
T Consensus 191 RI~~Rvd~Ml~--~GlldEv~~L~~~~~~~~~~~~~~qaIGYkE~~~yL~~~~~~~~~g~~~~~~~~~l~e~ie~ik~~T 268 (334)
T PLN02165 191 YLSKRVDEMMD--SGMFEELAEFYDPVKSGSEPLGIRKAIGVPEFDRYFKKYPPENKMGKWDQARKAAYEEAVREIKENT 268 (334)
T ss_pred HHHHHHHHHHH--CCHHHHHHHHHHccCCcccCCCceeEEcHHHHHHHHHhccccccCCccchhhhhhHHHHHHHHHHHH
Confidence 99999999999 999999999998876543 247999999999999997432211 4442 223556799999999
Q ss_pred HHHHhHHHHHhcCCCC----ceEecCCC
Q 012837 352 RNFAKRQLTWFRNERI----YHWLNAAR 375 (455)
Q Consensus 352 R~yAKRQ~TWfR~~~~----~~w~d~~~ 375 (455)
|||||||+||||++.. ++|+|+++
T Consensus 269 rqYAKRQ~TWfR~~~~~~~~~~~lD~t~ 296 (334)
T PLN02165 269 CQLAKRQIEKIMKLKSAGWDIKRVDATA 296 (334)
T ss_pred HHHHHHHHHHhcCCcccCCcEEEEechh
Confidence 9999999999999764 45788664
No 9
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-52 Score=414.13 Aligned_cols=298 Identities=33% Similarity=0.509 Sum_probs=239.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDA 122 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a 122 (455)
+.++|+|+||||||||.||+.||.++++||||+|+||||+|++|+|+|++.+|+.+|||||+++++|+.+|++++|..+|
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCccccccCCCc
Q 012837 123 RHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAAND 202 (455)
Q Consensus 123 ~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~A~~i~~nd 202 (455)
..+|++|+++|++|||||||++|++||+++..+. ..||.++.
T Consensus 86 ~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~---------------------------------~~dp~~~~----- 127 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDP---------------------------------KIDPFSSN----- 127 (348)
T ss_pred HHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCc---------------------------------ccCccccc-----
Confidence 9999999999999999999999999999875431 23665332
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHH
Q 012837 203 WYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLR 282 (455)
Q Consensus 203 ~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~rI~~R 282 (455)
||.++|++ +|+++++||+.+..+|++++++|
T Consensus 128 -------------~g~~pS~l------------------------------------ryd~c~lWlda~~~VL~~~l~~R 158 (348)
T KOG1384|consen 128 -------------TGSIPSEL------------------------------------RYDCCFLWLDADQAVLFERLDKR 158 (348)
T ss_pred -------------CCCCCccc------------------------------------ccceEEEEEecchHHHHHHHHHH
Confidence 88888876 48999999999999999999999
Q ss_pred HHHhccCCCChHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhcCCC---CCHHHHHHHHHHHHHHHHHHHhHHH
Q 012837 283 CEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGT---SSTGEFYAFLAEFQKASRNFAKRQL 359 (455)
Q Consensus 283 vd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~---~s~~~~~~~l~~i~~~TR~yAKRQ~ 359 (455)
||+||+ +||+||++.+++.....+..+.-++||+.|+..|+......-+. ...+-++++++.||.+|++|||||.
T Consensus 159 VD~Ml~--~Gl~eE~~~f~~~~~s~~~~~i~~~iGv~e~d~f~~~~~~~~~k~d~~~~~~l~~aie~iK~nT~~lakrQ~ 236 (348)
T KOG1384|consen 159 VDDMLE--SGLLEELRDFYDPYNSSYRSGIRKAIGVPEFDGFKEFYPWLTDKWDLARKELLEKAIEAIKENTRRLAKRQK 236 (348)
T ss_pred HHHHHH--cchHHHHHHHhhhhhcCccccchhccCcHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999874444443457889998888888533211111 1223467899999999999999999
Q ss_pred HHhcCCCCce-E----ecCCC--------------------------cHHHHHHHHHHHhhccCCccccCcccccccccC
Q 012837 360 TWFRNERIYH-W----LNAAR--------------------------PLENVLNYIITAYHDSTGTLVVPDYLQIRRDSS 408 (455)
Q Consensus 360 TWfR~~~~~~-w----~d~~~--------------------------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 408 (455)
+|+.+..... | +|++. |-.++++.+.+.+.........++++.+.-...
T Consensus 237 ~~I~~l~~~~~~~i~~vdaT~~~~~~~~~~s~~~~~~~~~w~~~v~~ps~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (348)
T KOG1384|consen 237 RKIEKLFLPRKWDIHRVDATEVFLFAKNRSSWFRIEQREIWNNPVKPPSAKIVKRFLDYYESEARRLEGPESLAAEICLN 316 (348)
T ss_pred HHHHHhhcCCCccccccchHHHHHHhhhhhHHhhhccchhhccccccchHHHHHHHHHhhhhhcccccchHHHhHHHhhc
Confidence 9999854322 4 22211 112355555555544445555677777766544
Q ss_pred ChHHHhhhccccccccccccC
Q 012837 409 SSREVSELKSYRTRNRHFISR 429 (455)
Q Consensus 409 ~~~~~~~~k~y~~~~~~~~~~ 429 (455)
..-+....|-|+.+|++-.+.
T Consensus 317 ~~~~~~~~~~~r~~~~~~~~k 337 (348)
T KOG1384|consen 317 DSLEACVVKGERSKNRHEGSK 337 (348)
T ss_pred cchhHHHHHhhhhhhhhhccc
Confidence 455778888899988655443
No 10
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=99.87 E-value=4.4e-21 Score=183.05 Aligned_cols=214 Identities=23% Similarity=0.308 Sum_probs=146.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCc-ccccchhhHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHP-CEDYSVGKFFEDAR 123 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~-~~~~sv~~f~~~a~ 123 (455)
++++|.||||+|||++|+.||+++|++||++|++|+|.+++++|++|+++|+.++++++++.... +..+++.++.+...
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~Li 81 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERLI 81 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999997664 34688888888888
Q ss_pred HHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCccccccCCCcH
Q 012837 124 HATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDW 203 (455)
Q Consensus 124 ~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~A~~i~~nd~ 203 (455)
..+.++.+ ++.+|+.||+-..++.+.. |+
T Consensus 82 ~~v~~~~~-~~~~IlEGGSISLl~~m~~----------------------------------------~~---------- 110 (233)
T PF01745_consen 82 SEVNSYSA-HGGLILEGGSISLLNCMAQ----------------------------------------DP---------- 110 (233)
T ss_dssp HHHHTTTT-SSEEEEEE--HHHHHHHHH-----------------------------------------T----------
T ss_pred HHHHhccc-cCceEEeCchHHHHHHHHh----------------------------------------cc----------
Confidence 88888877 7889999997654422211 00
Q ss_pred HHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEe-CCHHHHHHHHHHH
Q 012837 204 YRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLR 282 (455)
Q Consensus 204 ~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~-~~Re~L~~rI~~R 282 (455)
+ ...+|...+..+. ++++.-..|+.+|
T Consensus 111 -------------------~---------------------------------w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 111 -------------------Y---------------------------------WSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp -------------------T---------------------------------TSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred -------------------c---------------------------------ccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 0 1123444444444 4788888999999
Q ss_pred HHHhcc---CCCChHHHHHHHHHcCCCCCCccccccc-cHHHHHHHHHHhhhcCC---CCCHHHHHHHHHHHHHHHHHHH
Q 012837 283 CEDMLP---GSDGILSEAAWLLDEGLLPNSNSATRAI-GYRQAMEYLLRCRQQGG---TSSTGEFYAFLAEFQKASRNFA 355 (455)
Q Consensus 283 vd~Ml~---~~~GLl~Ev~~L~~~g~~~~~~~a~~aI-GYkE~~~yL~~~~~~~g---~~s~~~~~~~l~~i~~~TR~yA 355 (455)
|.+|+. +..++++|+..|... |...+.+..| ||+-++.|-....-..+ .+..+...++++.|...--.||
T Consensus 139 v~~ML~p~~~~~Sll~EL~~lW~~---p~~r~~ledIdGyr~~i~~a~~~~v~~~~l~~~~~~~~~~Li~~ia~eY~~ha 215 (233)
T PF01745_consen 139 VRQMLRPDSSGPSLLEELVALWND---PALRPILEDIDGYRYIIRFARKHQVTPDQLLSIDLDMLQELIEGIAEEYLEHA 215 (233)
T ss_dssp HHHHHS--SSS--HHHHHHHHHTS---TTHHHHHTTSTTHHHHHHHHHHTT--GGGCCG-THHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCcHHHHHHHHHhC---ccccchHhhhccHHHHHHHHHHhCCCHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999997 345899999999964 4445677777 99999999864322111 1234445667889999999999
Q ss_pred hHHHHHhcC
Q 012837 356 KRQLTWFRN 364 (455)
Q Consensus 356 KRQ~TWfR~ 364 (455)
..|..=|-.
T Consensus 216 ~~QEq~F~~ 224 (233)
T PF01745_consen 216 QWQEQEFPQ 224 (233)
T ss_dssp HHHHHHS--
T ss_pred HHHHHhccC
Confidence 999886644
No 11
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.14 E-value=1.3e-11 Score=118.35 Aligned_cols=42 Identities=36% Similarity=0.612 Sum_probs=38.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccccccc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGS 88 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~T 88 (455)
.+|+|+||+||||||+|+.||++|| +.+.||+.+||.+....
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg--~~yldTGamYRa~a~~~ 46 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG--FHYLDTGAMYRAVALAA 46 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC--CCeecccHHHHHHHHHH
Confidence 7899999999999999999999999 77799999999998654
No 12
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.11 E-value=4.5e-11 Score=112.57 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=77.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccch------
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSV------ 115 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv------ 115 (455)
+++.+|+|+||||||||||+..|++.++ . +|..+.++|++|...+..+.+||+++...+...+..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~-~--------~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP-N--------LQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEW 73 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc-c--------ceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEE
Confidence 5678999999999999999999999876 2 577888999999999999999999876554332222
Q ss_pred ----hhHHHHHHHHHHHHHhcCCccEE---echhhHHHHHHH
Q 012837 116 ----GKFFEDARHATKDVLKKGRVPIV---TGGTGLYLRWFI 150 (455)
Q Consensus 116 ----~~f~~~a~~~i~~I~~~gk~pIv---vGGTg~Yl~aLl 150 (455)
+..+......+...+..|+.+|+ .+|+..+.+.+.
T Consensus 74 ~~~~~~~y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~ 115 (205)
T PRK00300 74 AEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMP 115 (205)
T ss_pred EEECCccccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCC
Confidence 22333456778999999998887 467666666554
No 13
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.09 E-value=9.4e-11 Score=105.16 Aligned_cols=97 Identities=23% Similarity=0.314 Sum_probs=74.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhH-------
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKF------- 118 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f------- 118 (455)
+|+|+||||||||||+..|++.++..+ .....++|++|...|..+++||+++...+...+..+.|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~--------~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~ 72 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF--------GFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFH 72 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc--------eecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEc
Confidence 479999999999999999999876432 22445689999999999999999998776655544444
Q ss_pred ---HHHHHHHHHHHHhcCCccEEechhhHHHHHHHh
Q 012837 119 ---FEDARHATKDVLKKGRVPIVTGGTGLYLRWFIY 151 (455)
Q Consensus 119 ---~~~a~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~ 151 (455)
+....+.+++++++|++||+.. +...++.+-.
T Consensus 73 ~~~yg~~~~~i~~~~~~g~~~il~~-~~~~~~~l~~ 107 (137)
T cd00071 73 GNYYGTSKAAVEEALAEGKIVILEI-DVQGARQVKK 107 (137)
T ss_pred CEEecCcHHHHHHHHhCCCeEEEEe-cHHHHHHHHH
Confidence 4477888999999999999874 3444444443
No 14
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.08 E-value=5.2e-11 Score=109.78 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=73.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhH-----
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKF----- 118 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f----- 118 (455)
+++|+|+||+|||||||+..|++.++.. +-...++|.+|...+..+..||+++...+...+..++|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~---------~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNL---------KFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAE 71 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccc---------cccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEE
Confidence 4689999999999999999999987642 22346788899999999999999886554443333333
Q ss_pred -----HHHHHHHHHHHHhcCCccEE---echhhHHHHHH
Q 012837 119 -----FEDARHATKDVLKKGRVPIV---TGGTGLYLRWF 149 (455)
Q Consensus 119 -----~~~a~~~i~~I~~~gk~pIv---vGGTg~Yl~aL 149 (455)
+....+.++.++.+|+++|+ ++|...+.+++
T Consensus 72 ~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~ 110 (180)
T TIGR03263 72 VHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKF 110 (180)
T ss_pred ECCeeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHHHhC
Confidence 33446778999999999988 57777777665
No 15
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.02 E-value=2.9e-10 Score=114.76 Aligned_cols=89 Identities=30% Similarity=0.460 Sum_probs=75.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCc-EEEcCccc------------------eecccccccCCCCccccccCccc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGE-IISADSVQ------------------VYRGLDIGSAKPSSSDRKEVPHH 102 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~-iIs~DS~q------------------iYr~l~I~Takps~~e~~~v~hh 102 (455)
++|.+|+|.|||||||||+|..||.++|.. +|+.|+++ .|.++.+++++|+.++ ||
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~-----~~ 164 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEP-----PV 164 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCch-----hh
Confidence 456789999999999999999999999987 89999999 8999999999988655 89
Q ss_pred cccccCcccccchhhHHHHHHHHHHHHHhcCCccEEec
Q 012837 103 LIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTG 140 (455)
Q Consensus 103 lid~~~~~~~~sv~~f~~~a~~~i~~I~~~gk~pIvvG 140 (455)
+.++.++.+.++++ ....|+....+|...||.|
T Consensus 165 l~g~~~~~~~v~~g-----i~~~I~~~~~~g~s~IiEG 197 (301)
T PRK04220 165 IYGFERHVEPVSVG-----VEAVIERALKEGISVIIEG 197 (301)
T ss_pred hhhHHHHHHHHHHH-----HHHHHHHHHHhCCcEEEec
Confidence 99999887776655 6677888888887666654
No 16
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.00 E-value=3.5e-10 Score=106.74 Aligned_cols=89 Identities=18% Similarity=0.309 Sum_probs=73.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccc-------
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYS------- 114 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~s------- 114 (455)
.++++|+|+||+|||||||+..|.+.++ +++...+++|.+|.+.|..|+.|||++...+.....
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~---------~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~ 72 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHP---------DFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEW 72 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCC---------ccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEE
Confidence 3678999999999999999999998764 235567899999999999999999999876644322
Q ss_pred ---hhhHHHHHHHHHHHHHhcCCccEEe
Q 012837 115 ---VGKFFEDARHATKDVLKKGRVPIVT 139 (455)
Q Consensus 115 ---v~~f~~~a~~~i~~I~~~gk~pIvv 139 (455)
.+.++....+.|+.+++.|+++|+.
T Consensus 73 ~~~~g~~YGt~~~~i~~~~~~g~~~i~d 100 (186)
T PRK14737 73 AEVHDNYYGTPKAFIEDAFKEGRSAIMD 100 (186)
T ss_pred EEECCeeecCcHHHHHHHHHcCCeEEEE
Confidence 2456777889999999999999886
No 17
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.95 E-value=2e-09 Score=101.54 Aligned_cols=87 Identities=24% Similarity=0.358 Sum_probs=67.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccch-------
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSV------- 115 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv------- 115 (455)
++.+++|+||+|+|||||.+.|-+..+ +.--++.+|.+|.+.|..|+.+||++.-++....+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~----------l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a 72 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK----------LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWA 72 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC----------eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEE
Confidence 678999999999999999999988764 233567899999999999999999998666443332
Q ss_pred ---hhHHHHHHHHHHHHHhcCCccEEe
Q 012837 116 ---GKFFEDARHATKDVLKKGRVPIVT 139 (455)
Q Consensus 116 ---~~f~~~a~~~i~~I~~~gk~pIvv 139 (455)
+.|+......++++++.|+.+|+.
T Consensus 73 ~~~gnyYGT~~~~ve~~~~~G~~vild 99 (191)
T COG0194 73 EYHGNYYGTSREPVEQALAEGKDVILD 99 (191)
T ss_pred EEcCCcccCcHHHHHHHHhcCCeEEEE
Confidence 345566677777777777766654
No 18
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.85 E-value=1.1e-09 Score=102.08 Aligned_cols=90 Identities=24% Similarity=0.390 Sum_probs=68.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccch-------
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSV------- 115 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv------- 115 (455)
++++|+|+||+|||||+|+..|.+.++..| ...+.++|.+|.+.|..|+.|||++-..+......
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~--------~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~ 72 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKF--------GRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYG 72 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTE--------EEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhccccc--------ccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEe
Confidence 468999999999999999999999987444 45778899999999999999999987665432222
Q ss_pred ---hhHHHHHHHHHHHHHhcCCccEEec
Q 012837 116 ---GKFFEDARHATKDVLKKGRVPIVTG 140 (455)
Q Consensus 116 ---~~f~~~a~~~i~~I~~~gk~pIvvG 140 (455)
+.++....+.++.+.++|+.+|+..
T Consensus 73 ~~~g~~YGt~~~~i~~~~~~gk~~il~~ 100 (183)
T PF00625_consen 73 EYDGNYYGTSKSAIDKVLEEGKHCILDV 100 (183)
T ss_dssp EETTEEEEEEHHHHHHHHHTTTEEEEEE
T ss_pred eecchhhhhccchhhHhhhcCCcEEEEc
Confidence 2345555788899999999998864
No 19
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.69 E-value=6.5e-09 Score=115.43 Aligned_cols=42 Identities=36% Similarity=0.477 Sum_probs=37.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIG 87 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~ 87 (455)
.++|+|+||+||||||+|+.||++++.++ .|++++||.+.+.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~--~~~~~~~~~~~~~ 483 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHY--LDSGALYRLTALA 483 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeE--ecHHHhhhHHHHH
Confidence 56899999999999999999999999666 7777899998753
No 20
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.61 E-value=3.7e-08 Score=92.09 Aligned_cols=90 Identities=21% Similarity=0.385 Sum_probs=71.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCccccc----------
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDY---------- 113 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~---------- 113 (455)
+++|+|+||+||||+||+..|.+.++- .+......+|..|.+.|..|+.|||++.-.+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~--------~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~ 73 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPD--------AFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGE 73 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCc--------ceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEE
Confidence 478999999999999999999998742 23567788999999999999999998865443211
Q ss_pred chhhHHHHHHHHHHHHHhcCCccEEech
Q 012837 114 SVGKFFEDARHATKDVLKKGRVPIVTGG 141 (455)
Q Consensus 114 sv~~f~~~a~~~i~~I~~~gk~pIvvGG 141 (455)
..+.|+....+.++++++.|+.+|+.+.
T Consensus 74 ~~g~~YGt~~~~i~~~~~~~~~~ild~~ 101 (184)
T smart00072 74 YSGNYYGTSKETIRQVAEQGKHCLLDID 101 (184)
T ss_pred EcCcCcccCHHHHHHHHHcCCeEEEEEC
Confidence 1245677778889999999999998764
No 21
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.58 E-value=2.2e-08 Score=113.71 Aligned_cols=49 Identities=29% Similarity=0.588 Sum_probs=39.6
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccc
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIG 87 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~ 87 (455)
..|.. +.+.+|+|+||+||||||+|..||++|+..+++.+ .+||++++.
T Consensus 27 ~~~~~---m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g--~~yRa~a~~ 75 (863)
T PRK12269 27 LQCRP---MGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTG--SFYRAFTLA 75 (863)
T ss_pred eeecc---cCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHH--HHHHHHHHH
Confidence 44553 45579999999999999999999999997665554 569999863
No 22
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.54 E-value=2e-07 Score=89.00 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCccccc--------
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDY-------- 113 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~-------- 113 (455)
.++++|+|+||+|||||||+..|++... .++.....+|..|...|..|+.||+++..++....
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~---------~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~ 81 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERKL---------PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEW 81 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcCC---------cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEE
Confidence 4678999999999999999999986421 12345567788888899999999999765543221
Q ss_pred --chhhHHHHHHHHHHHHHhcCCccEEechhhHHHHHHHh
Q 012837 114 --SVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIY 151 (455)
Q Consensus 114 --sv~~f~~~a~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~ 151 (455)
..+.++....+.++..++.|+.+|+.. +--++..+-.
T Consensus 82 ~~~~g~~YGt~~~~i~~~~~~g~~vi~~~-~~~g~~~l~~ 120 (206)
T PRK14738 82 AEVYGNYYGVPKAPVRQALASGRDVIVKV-DVQGAASIKR 120 (206)
T ss_pred EEEcCceecCCHHHHHHHHHcCCcEEEEc-CHHHHHHHHH
Confidence 123455556678888999999887753 3345555543
No 23
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.47 E-value=2.9e-07 Score=85.62 Aligned_cols=81 Identities=27% Similarity=0.400 Sum_probs=57.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDA 122 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a 122 (455)
+++.|+|+||+||||||++..||+.++..+++.|..- +++.+ .+.....+.+....|....
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i--------------~~~~g-----~~i~~~~~~~g~~~fr~~e 63 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI--------------EKRTG-----ADIGWVFDVEGEEGFRDRE 63 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchH--------------HHHhC-----cCHhHHHHHhCHHHHHHHH
Confidence 3567999999999999999999999999999999631 11111 1222223345566777777
Q ss_pred HHHHHHHHhcCCccEEechh
Q 012837 123 RHATKDVLKKGRVPIVTGGT 142 (455)
Q Consensus 123 ~~~i~~I~~~gk~pIvvGGT 142 (455)
.+++.++...+..+|.+||.
T Consensus 64 ~~~l~~l~~~~~~vi~~ggg 83 (172)
T PRK05057 64 EKVINELTEKQGIVLATGGG 83 (172)
T ss_pred HHHHHHHHhCCCEEEEcCCc
Confidence 88888887776666666663
No 24
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.45 E-value=2.8e-07 Score=83.55 Aligned_cols=80 Identities=33% Similarity=0.422 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDA 122 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a 122 (455)
+++.|+|+||+||||||+|..||+.++..+++.|.. .+. ..+.+ +-+. ...+....|....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~--~~~------------~~g~~--~~~~---~~~~g~~~~~~~~ 63 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHL--IEA------------RAGKS--IPEI---FEEEGEAAFRELE 63 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHH--HHH------------HcCCC--HHHH---HHHHCHHHHHHHH
Confidence 567999999999999999999999999999988864 111 01100 0010 1112334566666
Q ss_pred HHHHHHHHhcCCccEEech
Q 012837 123 RHATKDVLKKGRVPIVTGG 141 (455)
Q Consensus 123 ~~~i~~I~~~gk~pIvvGG 141 (455)
.+++.++......+|+.||
T Consensus 64 ~~~~~~l~~~~~~vi~~g~ 82 (175)
T PRK00131 64 EEVLAELLARHNLVISTGG 82 (175)
T ss_pred HHHHHHHHhcCCCEEEeCC
Confidence 7788888876566556665
No 25
>PLN02772 guanylate kinase
Probab=98.41 E-value=2.4e-07 Score=96.70 Aligned_cols=89 Identities=25% Similarity=0.320 Sum_probs=70.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCccccc---------
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDY--------- 113 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~--------- 113 (455)
..++|+|+||+|||||||...|.+.++.. +.....++|.+|.+.|..++.+||++...+....
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~--------~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~ 205 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFA 205 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcccc--------ccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceee
Confidence 45799999999999999999999877522 2346688999999999999999999754443221
Q ss_pred -chhhHHHHHHHHHHHHHhcCCccEEe
Q 012837 114 -SVGKFFEDARHATKDVLKKGRVPIVT 139 (455)
Q Consensus 114 -sv~~f~~~a~~~i~~I~~~gk~pIvv 139 (455)
-.+.|+....+.++.++++|+.+|+.
T Consensus 206 e~~Gn~YGTsk~~V~~vl~~Gk~vILd 232 (398)
T PLN02772 206 SVHGNLYGTSIEAVEVVTDSGKRCILD 232 (398)
T ss_pred eecCccccccHHHHHHHHHhCCcEEEe
Confidence 23566888899999999999999864
No 26
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.39 E-value=2.5e-07 Score=86.54 Aligned_cols=79 Identities=32% Similarity=0.376 Sum_probs=60.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDAR 123 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a~ 123 (455)
.+.|+++|+.||||||+++.||+.||.+|+..|.. .+++.+ +++-+..+.+-...|...-.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~--------------Ie~~~g-----~sI~eIF~~~GE~~FR~~E~ 62 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE--------------IEKRTG-----MSIAEIFEEEGEEGFRRLET 62 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH--------------HHHHHC-----cCHHHHHHHHhHHHHHHHHH
Confidence 35799999999999999999999999999998853 122222 44444444556678888899
Q ss_pred HHHHHHHhcCCccEEech
Q 012837 124 HATKDVLKKGRVPIVTGG 141 (455)
Q Consensus 124 ~~i~~I~~~gk~pIvvGG 141 (455)
+++.++...+..+|-+||
T Consensus 63 ~vl~~l~~~~~~ViaTGG 80 (172)
T COG0703 63 EVLKELLEEDNAVIATGG 80 (172)
T ss_pred HHHHHHhhcCCeEEECCC
Confidence 999999998866666676
No 27
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.38 E-value=8.4e-07 Score=85.84 Aligned_cols=40 Identities=40% Similarity=0.692 Sum_probs=34.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccccc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDI 86 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I 86 (455)
.+|+|+||+||||||+++.||++++..++ |++.+||.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~--~~g~~~r~~~~ 42 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL--DSGAMYRAIAL 42 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee--eCchHHHHHHH
Confidence 58999999999999999999999997776 56677988754
No 28
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.36 E-value=2.9e-07 Score=79.11 Aligned_cols=32 Identities=63% Similarity=0.868 Sum_probs=30.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+|+|+||+||||||+|..||+++|..+++.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 58999999999999999999999999999997
No 29
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=7e-07 Score=86.98 Aligned_cols=89 Identities=27% Similarity=0.392 Sum_probs=73.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHP 109 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~ 109 (455)
-|-++++++ +.+.+.+|.||+||||||||..|+.+-++++.+.+ -+|.|-+|....|+...+.| -++.++.|
T Consensus 19 ILkgvnL~v---~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~--I~~~GedI~~l~~~ERAr~G---ifLafQ~P 90 (251)
T COG0396 19 ILKGVNLTV---KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE--ILFDGEDILELSPDERARAG---IFLAFQYP 90 (251)
T ss_pred hhcCcceeE---cCCcEEEEECCCCCCHHHHHHHHhCCCCceEecce--EEECCcccccCCHhHHHhcC---CEEeecCC
Confidence 344599999 88899999999999999999999999988887665 35999999998887777777 57888888
Q ss_pred cc--ccchhhHHHHHHHHH
Q 012837 110 CE--DYSVGKFFEDARHAT 126 (455)
Q Consensus 110 ~~--~~sv~~f~~~a~~~i 126 (455)
.+ -.++.+|+..|.++.
T Consensus 91 ~ei~GV~~~~fLr~a~n~~ 109 (251)
T COG0396 91 VEIPGVTNSDFLRAAMNAR 109 (251)
T ss_pred ccCCCeeHHHHHHHHHHhh
Confidence 65 467788887776654
No 30
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.32 E-value=4e-07 Score=98.30 Aligned_cols=44 Identities=34% Similarity=0.513 Sum_probs=37.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccccccc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGS 88 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~T 88 (455)
++.+|+|+||+||||||+|+.||+++|.. ..|++.+||.+....
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~--~~d~g~~YR~~a~~~ 326 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLL--YLDTGAMYRAVTWLV 326 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCe--EecCCceehHHHHHH
Confidence 67899999999999999999999999954 455557799986543
No 31
>PRK13946 shikimate kinase; Provisional
Probab=98.32 E-value=6.3e-07 Score=83.91 Aligned_cols=81 Identities=26% Similarity=0.412 Sum_probs=53.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDA 122 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a 122 (455)
.++.|+|+|++||||||++..||+++|.+++..|.. + .. ..+ ++.......+....|....
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~-~-~~------------~~g-----~~~~e~~~~~ge~~~~~~e 69 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTE-I-ER------------AAR-----MTIAEIFAAYGEPEFRDLE 69 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHH-H-HH------------HhC-----CCHHHHHHHHCHHHHHHHH
Confidence 346899999999999999999999999999999952 1 10 001 0111111224445566666
Q ss_pred HHHHHHHHhcCCccEEechhh
Q 012837 123 RHATKDVLKKGRVPIVTGGTG 143 (455)
Q Consensus 123 ~~~i~~I~~~gk~pIvvGGTg 143 (455)
.+++..+...+.. ||++|.|
T Consensus 70 ~~~l~~l~~~~~~-Vi~~ggg 89 (184)
T PRK13946 70 RRVIARLLKGGPL-VLATGGG 89 (184)
T ss_pred HHHHHHHHhcCCe-EEECCCC
Confidence 7888888877654 5555444
No 32
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.32 E-value=1.1e-05 Score=74.88 Aligned_cols=38 Identities=42% Similarity=0.677 Sum_probs=34.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLD 85 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~ 85 (455)
+|+|+||+||||||+|..||+++|.++||+. .+||.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG--~iFR~~A 39 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAG--TIFREMA 39 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeecc--HHHHHHH
Confidence 7999999999999999999999999998865 5688874
No 33
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.31 E-value=5e-07 Score=101.33 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=34.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIG 87 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~ 87 (455)
+|+|+||+||||||+|+.||+++|..+ .|++.+||++++.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~--~~~g~~~r~~~~~ 42 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAY--LDTGAMYRACAWW 42 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--eecCcEeHHHHHH
Confidence 799999999999999999999999555 6666789998764
No 34
>PRK13948 shikimate kinase; Provisional
Probab=98.30 E-value=1.1e-06 Score=83.02 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=56.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFED 121 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~ 121 (455)
..+..|+|+|+.||||||+++.||++++..+|.+|.. + ++..+ .+.-+....+....|.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~-i-------------e~~~g-----~si~~if~~~Ge~~fR~~ 68 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRY-I-------------ERVTG-----KSIPEIFRHLGEAYFRRC 68 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHH-H-------------HHHHh-----CCHHHHHHHhCHHHHHHH
Confidence 4567899999999999999999999999999999943 1 11111 111111122334567777
Q ss_pred HHHHHHHHHhcCCccEEech
Q 012837 122 ARHATKDVLKKGRVPIVTGG 141 (455)
Q Consensus 122 a~~~i~~I~~~gk~pIvvGG 141 (455)
-.+++.++...+...|.+||
T Consensus 69 E~~~l~~l~~~~~~VIa~Gg 88 (182)
T PRK13948 69 EAEVVRRLTRLDYAVISLGG 88 (182)
T ss_pred HHHHHHHHHhcCCeEEECCC
Confidence 77778888777776677776
No 35
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.23 E-value=2.4e-06 Score=77.68 Aligned_cols=33 Identities=39% Similarity=0.664 Sum_probs=30.6
Q ss_pred EEEEcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 47 I~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
|+|+||+||||||+|..|++.++..+++.|++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcccc
Confidence 579999999999999999999999999999864
No 36
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.22 E-value=1.7e-06 Score=81.18 Aligned_cols=57 Identities=37% Similarity=0.549 Sum_probs=49.8
Q ss_pred hcccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccCCC
Q 012837 27 RRRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSAKP 91 (455)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Takp 91 (455)
.+.-|..+||++ .++..|+|.||+|||||+|.+.+|. .||.||+.+ |+|-++.|.+|
T Consensus 15 ~a~il~~isl~v---~~Ge~iaitGPSG~GKStllk~va~-----Lisp~~G~l~f~Ge~vs~~~p 72 (223)
T COG4619 15 DAKILNNISLSV---RAGEFIAITGPSGCGKSTLLKIVAS-----LISPTSGTLLFEGEDVSTLKP 72 (223)
T ss_pred CCeeecceeeee---cCCceEEEeCCCCccHHHHHHHHHh-----ccCCCCceEEEcCccccccCh
Confidence 345566799999 8899999999999999999999996 678999997 69999888776
No 37
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.17 E-value=2.4e-06 Score=76.27 Aligned_cols=78 Identities=26% Similarity=0.287 Sum_probs=49.9
Q ss_pred EEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHHHHHH
Q 012837 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHAT 126 (455)
Q Consensus 47 I~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a~~~i 126 (455)
|+|+||+||||||+|..||+.++..++++|..- .+.. + .+..+..+.+....|.....+++
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~-~~~~-------------~-----~~~~~~~~~~~~~~~~~~e~~~~ 62 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELI-EQRA-------------G-----MSIPEIFAEEGEEGFRELEREVL 62 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHH-HHHc-------------C-----CCHHHHHHHHCHHHHHHHHHHHH
Confidence 799999999999999999999999999999541 1110 0 00001111223445666556677
Q ss_pred HHHHhcCCccEEechhhH
Q 012837 127 KDVLKKGRVPIVTGGTGL 144 (455)
Q Consensus 127 ~~I~~~gk~pIvvGGTg~ 144 (455)
..+...+.. ||++|.|.
T Consensus 63 ~~~~~~~~~-vi~~g~~~ 79 (154)
T cd00464 63 LLLLTKENA-VIATGGGA 79 (154)
T ss_pred HHHhccCCc-EEECCCCc
Confidence 777776655 44445444
No 38
>PRK13949 shikimate kinase; Provisional
Probab=98.17 E-value=2.1e-06 Score=79.71 Aligned_cols=78 Identities=27% Similarity=0.286 Sum_probs=50.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARH 124 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a~~ 124 (455)
+.|+|+||+||||||+++.||+.++..+++.|.. +-+.. -..+-+..+.+....|.+...+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~-i~~~~------------------~~~~~~~~~~~g~~~fr~~e~~ 62 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFF-IENRF------------------HKTVGDIFAERGEAVFRELERN 62 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHH-HHHHH------------------CccHHHHHHHhCHHHHHHHHHH
Confidence 3699999999999999999999999999999953 11110 0011111122344567766677
Q ss_pred HHHHHHhcCCccEEech
Q 012837 125 ATKDVLKKGRVPIVTGG 141 (455)
Q Consensus 125 ~i~~I~~~gk~pIvvGG 141 (455)
++.++......+|.+||
T Consensus 63 ~l~~l~~~~~~vis~Gg 79 (169)
T PRK13949 63 MLHEVAEFEDVVISTGG 79 (169)
T ss_pred HHHHHHhCCCEEEEcCC
Confidence 77776555444444554
No 39
>PRK06217 hypothetical protein; Validated
Probab=98.17 E-value=9.4e-06 Score=75.76 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=31.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+.|+|+|++||||||+|..||+.+|.++++.|.+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~ 35 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDY 35 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCce
Confidence 3599999999999999999999999999999974
No 40
>PRK13947 shikimate kinase; Provisional
Probab=98.15 E-value=3.8e-06 Score=76.76 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=31.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.|+|+||+||||||+|..||+.++..+++.|..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~ 35 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE 35 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchh
Confidence 599999999999999999999999999999963
No 41
>PRK13808 adenylate kinase; Provisional
Probab=98.14 E-value=0.00022 Score=73.53 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=28.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.|+|+||+||||||++..||+.+|...|+.|.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gd 33 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGD 33 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccH
Confidence 48999999999999999999999977766654
No 42
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.13 E-value=5.3e-06 Score=77.65 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=29.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+.+++|+||+|||||||++.|+..++.+|+..|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~ 35 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHR 35 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCE
Confidence 4689999999999999999999988777766554
No 43
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.09 E-value=1.7e-06 Score=84.09 Aligned_cols=43 Identities=40% Similarity=0.616 Sum_probs=35.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccccc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDI 86 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I 86 (455)
+++.+|+|+||+||||||+|..||+++|..++ |++.+||.+..
T Consensus 2 ~~~~~i~i~g~~gsGksti~~~la~~~~~~~~--~~~~~~r~~~~ 44 (225)
T PRK00023 2 MKAIVIAIDGPAGSGKGTVAKILAKKLGFHYL--DTGAMYRAVAL 44 (225)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCchhHHHHHH
Confidence 34679999999999999999999999996664 45567998654
No 44
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.06 E-value=6e-06 Score=72.74 Aligned_cols=33 Identities=52% Similarity=0.857 Sum_probs=31.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+|+++||+||||||+|..|++.++..+|+.|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~ 33 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEI 33 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHH
Confidence 689999999999999999999999999999974
No 45
>PRK00625 shikimate kinase; Provisional
Probab=98.06 E-value=4e-06 Score=78.50 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=50.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHHHHH
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHA 125 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a~~~ 125 (455)
.|+|+|++||||||+++.||++++..+|++|..-. +..+..- ....-+....+....|.....++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~--------------~~~g~~~-~~~i~eif~~~Ge~~fr~~E~~~ 66 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIV--------------SNYHGAL-YSSPKEIYQAYGEEGFCREEFLA 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHH--------------HHhCCCC-CCCHHHHHHHHCHHHHHHHHHHH
Confidence 58999999999999999999999999999996421 1000000 00111111233455677777777
Q ss_pred HHHHHhcCCccEEech
Q 012837 126 TKDVLKKGRVPIVTGG 141 (455)
Q Consensus 126 i~~I~~~gk~pIvvGG 141 (455)
+.++.. +...|.+||
T Consensus 67 l~~l~~-~~~VIs~GG 81 (173)
T PRK00625 67 LTSLPV-IPSIVALGG 81 (173)
T ss_pred HHHhcc-CCeEEECCC
Confidence 777754 444555665
No 46
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.03 E-value=7.6e-06 Score=76.36 Aligned_cols=91 Identities=20% Similarity=0.361 Sum_probs=58.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCcccc-ccCccccccccCccccc-chhhHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDR-KEVPHHLIDILHPCEDY-SVGKFFEDA 122 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~-~~v~hhlid~~~~~~~~-sv~~f~~~a 122 (455)
++|+|+||+|||||++|..|+..++..+++ +.|++|..+|+ +.++||...- +. .| ++..+. +-
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~-----------iat~~~~~~e~~~ri~~h~~~R--~~-~w~t~E~~~-~l 66 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLY-----------IATAQPFDDEMAARIAHHRQRR--PA-HWQTVEEPL-DL 66 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEe-----------CcCCCCChHHHHHHHHHHHhcC--CC-CCeEecccc-cH
Confidence 478999999999999999999998755543 55666666665 6788887664 22 23 222222 22
Q ss_pred HHHHHHHHhcCCccEEechhhHHHHHHHh
Q 012837 123 RHATKDVLKKGRVPIVTGGTGLYLRWFIY 151 (455)
Q Consensus 123 ~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~ 151 (455)
.+.+.....++. .|++-+.+.|+..+++
T Consensus 67 ~~~i~~~~~~~~-~VlID~Lt~~~~n~l~ 94 (170)
T PRK05800 67 AELLRADAAPGR-CVLVDCLTTWVTNLLF 94 (170)
T ss_pred HHHHHhhcCCCC-EEEehhHHHHHHHHhc
Confidence 334444334444 4666666777666654
No 47
>PRK07261 topology modulation protein; Provisional
Probab=97.99 E-value=7e-06 Score=76.26 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=31.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
.|+|+||+||||||||..|++.++.++++.|.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 5899999999999999999999999999999764
No 48
>PLN02199 shikimate kinase
Probab=97.97 E-value=9e-06 Score=82.27 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=57.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce--ecccccccCCCCccccccCccccccccCcccccchhhHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV--YRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFED 121 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi--Yr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~ 121 (455)
++.|+|+|++||||||++..||+.++..+|.+|..-. +.|. .+.+....+....|.+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~--------------------sI~eIf~~~GE~~FR~~ 161 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGT--------------------SVAEIFVHHGENFFRGK 161 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCC--------------------CHHHHHHHhCHHHHHHH
Confidence 5789999999999999999999999999999996421 1111 11222333555678888
Q ss_pred HHHHHHHHHhcCCccEEech
Q 012837 122 ARHATKDVLKKGRVPIVTGG 141 (455)
Q Consensus 122 a~~~i~~I~~~gk~pIvvGG 141 (455)
-.+++.++......+|-+||
T Consensus 162 E~e~L~~L~~~~~~VIStGG 181 (303)
T PLN02199 162 ETDALKKLSSRYQVVVSTGG 181 (303)
T ss_pred HHHHHHHHHhcCCEEEECCC
Confidence 88889998766655555666
No 49
>PRK08118 topology modulation protein; Reviewed
Probab=97.97 E-value=6.4e-06 Score=76.35 Aligned_cols=34 Identities=38% Similarity=0.583 Sum_probs=31.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+.|+|+||+||||||||+.|++.++.++++.|..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 3689999999999999999999999999999965
No 50
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.92 E-value=8.6e-06 Score=71.82 Aligned_cols=31 Identities=42% Similarity=0.652 Sum_probs=29.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
+|+|+|++||||||+|..||+.++.++++.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 5899999999999999999999999999888
No 51
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.91 E-value=1.2e-05 Score=74.12 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=23.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++|+|+||+|||||||+..|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999999876
No 52
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.90 E-value=1.4e-05 Score=73.17 Aligned_cols=34 Identities=24% Similarity=0.493 Sum_probs=31.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+.|+|+|++||||||+|+.||+++|..+++.|..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~ 36 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQW 36 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence 4689999999999999999999999999999964
No 53
>PRK06547 hypothetical protein; Provisional
Probab=97.89 E-value=1.2e-05 Score=75.18 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=33.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
....+|+|+||+||||||+|..||+.++..+++.|..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~ 49 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDL 49 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccce
Confidence 4567899999999999999999999999999999974
No 54
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.89 E-value=3.6e-05 Score=74.72 Aligned_cols=42 Identities=38% Similarity=0.567 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCc---EEEcCccceeccccc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGE---IISADSVQVYRGLDI 86 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~---iIs~DS~qiYr~l~I 86 (455)
+..+|+|+|++||||||+|+.|+..++.+ +|+.|+. |+....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y--Yk~~~~ 51 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY--YKDQSH 51 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc--ccchhh
Confidence 34689999999999999999999999977 9999985 775543
No 55
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.87 E-value=1.2e-05 Score=79.94 Aligned_cols=51 Identities=41% Similarity=0.445 Sum_probs=40.5
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccC
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSA 89 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Ta 89 (455)
+-++||++ +++.+++|.||+|||||||.+.|+.-+. .++++| ..|.++.+-
T Consensus 18 l~~ls~~i---~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~i~~~ 69 (258)
T COG1120 18 LDDLSFSI---PKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKDIASL 69 (258)
T ss_pred EecceEEe---cCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCchhhc
Confidence 33599999 7889999999999999999999998654 566666 356666543
No 56
>PRK14530 adenylate kinase; Provisional
Probab=97.86 E-value=1.6e-05 Score=76.13 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++.|+|+||+||||||+|..||++++..+|+.|.
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~ 36 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGD 36 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccH
Confidence 34579999999999999999999999988777764
No 57
>PRK03839 putative kinase; Provisional
Probab=97.85 E-value=1.4e-05 Score=73.94 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=30.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.|+|+|++||||||++..||++++..+++.|.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~ 33 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTE 33 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhh
Confidence 58999999999999999999999999988885
No 58
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.83 E-value=1.7e-05 Score=86.55 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=58.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDA 122 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a 122 (455)
+.+.|+|+|+.||||||+++.||+.++.+||..|.. | +++.+ .++-+....+....|++.-
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~-i-------------e~~~g-----~si~eif~~~Ge~~FR~~E 65 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE-I-------------EREIG-----MSIPSYFEEYGEPAFREVE 65 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH-H-------------HHHHC-----cCHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999963 2 22222 2222233345567788888
Q ss_pred HHHHHHHHhcCCccEEechh
Q 012837 123 RHATKDVLKKGRVPIVTGGT 142 (455)
Q Consensus 123 ~~~i~~I~~~gk~pIvvGGT 142 (455)
.+++.++.......|-+||-
T Consensus 66 ~~~l~~~~~~~~~VIs~GGG 85 (542)
T PRK14021 66 ADVVADMLEDFDGIFSLGGG 85 (542)
T ss_pred HHHHHHHHhcCCeEEECCCc
Confidence 88888887655544546663
No 59
>PRK08233 hypothetical protein; Provisional
Probab=97.82 E-value=2e-05 Score=72.18 Aligned_cols=35 Identities=31% Similarity=0.533 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC-CcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN-GEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~-~~iIs~DS 77 (455)
++.+|+|+|++||||||||..||++++ ..++..|.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 568999999999999999999999996 44555554
No 60
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.82 E-value=1e-05 Score=76.08 Aligned_cols=37 Identities=46% Similarity=0.657 Sum_probs=32.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGL 84 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l 84 (455)
.|+|+||+||||||+|..||+.++ +...|++.+||+-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~r~~ 38 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDILRAA 38 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHhHhh
Confidence 589999999999999999999977 7788887777764
No 61
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.80 E-value=2.6e-05 Score=79.16 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=53.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFED 121 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~ 121 (455)
.++..|+|+|++||||||++..||+++|..+|..|.. +.+. .+ ++..+....+....|...
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~-i~~~-------------~G-----~~i~ei~~~~G~~~fr~~ 191 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNRE-IERE-------------AG-----LSVSEIFALYGQEGYRRL 191 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHH-HHHH-------------hC-----CCHHHHHHHHCHHHHHHH
Confidence 3567899999999999999999999999999977742 2111 11 111111112345567777
Q ss_pred HHHHHHHHHhcCCccEEechhhH
Q 012837 122 ARHATKDVLKKGRVPIVTGGTGL 144 (455)
Q Consensus 122 a~~~i~~I~~~gk~pIvvGGTg~ 144 (455)
..+.+.++.......||..|.|.
T Consensus 192 e~~~l~~ll~~~~~~VI~~Ggg~ 214 (309)
T PRK08154 192 ERRALERLIAEHEEMVLATGGGI 214 (309)
T ss_pred HHHHHHHHHhhCCCEEEECCCch
Confidence 67778887665444455444443
No 62
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.79 E-value=2e-05 Score=70.53 Aligned_cols=33 Identities=39% Similarity=0.688 Sum_probs=30.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+|+|+||+||||||+|..|++.++..+++.|..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~ 33 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDL 33 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCccc
Confidence 589999999999999999999999989888864
No 63
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.78 E-value=2.7e-05 Score=73.90 Aligned_cols=38 Identities=34% Similarity=0.475 Sum_probs=32.1
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHcC---CcEEEcCcc
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRLN---GEIISADSV 78 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l~---~~iIs~DS~ 78 (455)
+.++.+|+|+||+|||||||+..|++.++ ..+++.|..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 35778999999999999999999999983 346777764
No 64
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.75 E-value=2.5e-05 Score=72.13 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=29.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+|+|+||+||||||+|..||+++|...|++|.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d 32 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGD 32 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECCh
Confidence 58999999999999999999999988888764
No 65
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.74 E-value=6.1e-05 Score=69.47 Aligned_cols=29 Identities=38% Similarity=0.543 Sum_probs=26.4
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
..++.+|+|.|++||||||+|..|++.++
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35778999999999999999999999886
No 66
>PRK06762 hypothetical protein; Provisional
Probab=97.74 E-value=2.3e-05 Score=71.46 Aligned_cols=34 Identities=35% Similarity=0.643 Sum_probs=29.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHc--CCcEEEcCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRL--NGEIISADS 77 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l--~~~iIs~DS 77 (455)
+++|+|+|++||||||+|..|++++ +..+++.|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~ 37 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV 37 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH
Confidence 5799999999999999999999998 455666664
No 67
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.74 E-value=9.9e-05 Score=63.44 Aligned_cols=33 Identities=39% Similarity=0.611 Sum_probs=29.4
Q ss_pred EEEEcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 47 IVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 47 I~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
|.|.||+|+|||+++..+|+.++.+++..|...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~ 33 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSE 33 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccc
Confidence 689999999999999999999998887777543
No 68
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.73 E-value=2.8e-05 Score=71.67 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+.++|+|.||+||||||+|..||+.+|...+++|.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~ 36 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGD 36 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHH
Confidence 34789999999999999999999999977777663
No 69
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.73 E-value=0.00031 Score=76.50 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=33.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++.+|+++|++||||||+|..++..+++.+||.|.
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~ 402 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADT 402 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHH
Confidence 467899999999999999999999999999999995
No 70
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.72 E-value=0.00038 Score=64.16 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=26.0
Q ss_pred EcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 50 SGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 50 ~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+||+|||||||+..||..++..+++.|..
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence 59999999999999999999888887754
No 71
>PRK14531 adenylate kinase; Provisional
Probab=97.67 E-value=4.6e-05 Score=71.17 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=29.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+.|+|+||+||||||+|..||+.+|...|+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd 35 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGD 35 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEeccc
Confidence 469999999999999999999999988888753
No 72
>PTZ00301 uridine kinase; Provisional
Probab=97.66 E-value=3.9e-05 Score=74.08 Aligned_cols=39 Identities=38% Similarity=0.516 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC-------CcEEEcCccceecc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN-------GEIISADSVQVYRG 83 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~-------~~iIs~DS~qiYr~ 83 (455)
+..+|+|+|||||||||||..|+++++ ..+++.|.. |+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y--y~~ 47 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY--YRD 47 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC--ccC
Confidence 457999999999999999999988762 236777874 554
No 73
>PRK14527 adenylate kinase; Provisional
Probab=97.65 E-value=4e-05 Score=71.89 Aligned_cols=36 Identities=39% Similarity=0.569 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++++|+|+||+||||||+|..||++++...++.|.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd 39 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGD 39 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccH
Confidence 467899999999999999999999999977766653
No 74
>PRK14532 adenylate kinase; Provisional
Probab=97.65 E-value=5.1e-05 Score=70.65 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=28.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.|+|.||+||||||+|..||+++|...|+.|.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d 33 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGD 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcH
Confidence 48999999999999999999999988877764
No 75
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.63 E-value=9.2e-05 Score=79.11 Aligned_cols=43 Identities=40% Similarity=0.545 Sum_probs=38.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCc-EEEcCc-cceeccc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGE-IISADS-VQVYRGL 84 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~-iIs~DS-~qiYr~l 84 (455)
.++.+|+++|+|||||||+|..||..++.. +|+.|+ .++++++
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~ 297 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM 297 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence 457899999999999999999999999987 889999 4677776
No 76
>PRK04182 cytidylate kinase; Provisional
Probab=97.63 E-value=4.3e-05 Score=69.80 Aligned_cols=31 Identities=45% Similarity=0.677 Sum_probs=28.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
+|+|+|++||||||+|..||+.++.+++++|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~ 32 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAG 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHH
Confidence 7999999999999999999999998887765
No 77
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00013 Score=71.80 Aligned_cols=51 Identities=27% Similarity=0.330 Sum_probs=41.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee-ccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY-RGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY-r~l~I~T 88 (455)
.+.++||++ .++..++|+|++|||||||++.||.- ...+++.|+ .|-...-
T Consensus 22 ~l~~VS~~i---~~Ge~lgivGeSGsGKSTL~r~l~Gl-----~~p~~G~I~~~G~~~~~ 73 (252)
T COG1124 22 ALNNVSLEI---ERGETLGIVGESGSGKSTLARLLAGL-----EKPSSGSILLDGKPLAP 73 (252)
T ss_pred hhcceeEEe---cCCCEEEEEcCCCCCHHHHHHHHhcc-----cCCCCceEEECCcccCc
Confidence 455699999 88999999999999999999999973 357888874 4544443
No 78
>PRK06696 uridine kinase; Validated
Probab=97.60 E-value=6.9e-05 Score=72.24 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc---CCcE--EEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL---NGEI--ISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l---~~~i--Is~DS~ 78 (455)
..+.+|+|+|++||||||||..||+.+ |..+ ++.|..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 457899999999999999999999999 3344 447764
No 79
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.59 E-value=6.3e-05 Score=69.77 Aligned_cols=31 Identities=39% Similarity=0.539 Sum_probs=29.2
Q ss_pred EEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 47 IVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 47 I~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
|+|.||+||||||+|..||+++|..+|++|.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~ 32 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGD 32 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 8999999999999999999999999888875
No 80
>PRK12338 hypothetical protein; Provisional
Probab=97.59 E-value=0.00015 Score=74.24 Aligned_cols=36 Identities=42% Similarity=0.559 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEE-EcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEII-SADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iI-s~DS 77 (455)
+++.+|+|.|++||||||+|..||+++|...+ +.|.
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~ 38 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDF 38 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChH
Confidence 46789999999999999999999999997755 5564
No 81
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.59 E-value=0.00094 Score=63.76 Aligned_cols=33 Identities=36% Similarity=0.360 Sum_probs=29.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++|+|+|+.||||||++..|+. +|..+|++|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHH
Confidence 4799999999999999999997 79999999953
No 82
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.58 E-value=5.8e-05 Score=73.29 Aligned_cols=50 Identities=40% Similarity=0.499 Sum_probs=38.5
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee-ccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY-RGLDI 86 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY-r~l~I 86 (455)
.-|-++++++ .++.+++|+||+|||||||.+.|.. .-..|+++|+ .|.++
T Consensus 16 ~VLkgi~l~v---~~Gevv~iiGpSGSGKSTlLRclN~-----LE~~~~G~I~i~g~~~ 66 (240)
T COG1126 16 EVLKGISLSV---EKGEVVVIIGPSGSGKSTLLRCLNG-----LEEPDSGSITVDGEDV 66 (240)
T ss_pred EEecCcceeE---cCCCEEEEECCCCCCHHHHHHHHHC-----CcCCCCceEEECCEec
Confidence 3355699999 8999999999999999999999975 2246777763 34333
No 83
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.58 E-value=7.8e-05 Score=70.62 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=40.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.+-.+||++ .++.+++|+||+|||||||.+.||..+. .|+++| |.|.++.+
T Consensus 16 ~l~~~sl~i---~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~ 67 (214)
T cd03292 16 ALDGINISI---SAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSD 67 (214)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEccc
Confidence 455699999 7889999999999999999999997553 567776 45655543
No 84
>PRK08356 hypothetical protein; Provisional
Probab=97.57 E-value=9.2e-05 Score=69.84 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=27.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++|+|+||+||||||+|..|+ .++...|++..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~ 37 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSD 37 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCC
Confidence 3689999999999999999996 47877777664
No 85
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.57 E-value=7.5e-05 Score=72.99 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=31.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+..|+|+||+||||||+|..||+.++...|+.|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdl 40 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNI 40 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECChH
Confidence 34599999999999999999999999888888854
No 86
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.57 E-value=6.6e-05 Score=69.46 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=26.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEE
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEII 73 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iI 73 (455)
+++|+|+||+||||||+|+.|++.++..++
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~ 31 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWL 31 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcc
Confidence 579999999999999999999999876554
No 87
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.56 E-value=6.4e-05 Score=68.19 Aligned_cols=32 Identities=47% Similarity=0.729 Sum_probs=29.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+|+|+|++||||||+|..||+.++.++++.|.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~ 33 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGD 33 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHH
Confidence 79999999999999999999999999888763
No 88
>PLN02200 adenylate kinase family protein
Probab=97.56 E-value=8.6e-05 Score=72.66 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.+.+|+|+||+||||||+|..||+++|...|+++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gd 76 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGD 76 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccH
Confidence 35689999999999999999999999977666653
No 89
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.55 E-value=7.1e-05 Score=74.65 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=31.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHc-CCcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRL-NGEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l-~~~iIs~DS~ 78 (455)
+++|+++||+||||||+|+.|++++ +..+++.|..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH
Confidence 4689999999999999999999999 8889988864
No 90
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.54 E-value=8.1e-05 Score=70.82 Aligned_cols=36 Identities=36% Similarity=0.496 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC---CcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN---GEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~---~~iIs~DS 77 (455)
+++.+|+|+||+|||||||+..|+..++ ..+++.|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~ 42 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDN 42 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccc
Confidence 4568999999999999999999999876 34666665
No 91
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.53 E-value=7.3e-05 Score=71.03 Aligned_cols=33 Identities=39% Similarity=0.502 Sum_probs=30.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHc-CCcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRL-NGEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l-~~~iIs~DS~ 78 (455)
+|+|+|++||||||+|..|++.+ +..+|+.|..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccc
Confidence 58999999999999999999998 6889999975
No 92
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.53 E-value=7.3e-05 Score=70.39 Aligned_cols=24 Identities=54% Similarity=0.855 Sum_probs=23.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcC
Q 012837 46 VIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+|+|+||+||||||+|..|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999997
No 93
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.52 E-value=9.5e-05 Score=72.25 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=42.5
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccC
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSA 89 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Ta 89 (455)
..|-.+++++ +++..++|+||+|||||||...|+.-. ..|++.+ +.|.++.+.
T Consensus 19 ~~L~~v~l~i---~~Ge~vaI~GpSGSGKSTLLniig~ld-----~pt~G~v~i~g~d~~~l 72 (226)
T COG1136 19 EALKDVNLEI---EAGEFVAIVGPSGSGKSTLLNLLGGLD-----KPTSGEVLINGKDLTKL 72 (226)
T ss_pred EecccceEEE---cCCCEEEEECCCCCCHHHHHHHHhccc-----CCCCceEEECCEEcCcC
Confidence 3455699999 889999999999999999999998643 4688885 677666543
No 94
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.51 E-value=8.4e-05 Score=72.13 Aligned_cols=56 Identities=39% Similarity=0.551 Sum_probs=45.6
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccCCC
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSAKP 91 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Takp 91 (455)
+|-+-++|+.+ ..+.+.+|+||+|+|||||.+.|..++. .|++.+ |.|.+.-+.+|
T Consensus 14 r~ll~~vsl~~---~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 14 RRLLDGVSLDL---RPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred ceeccCcceec---cCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcChhhCCH
Confidence 55555799999 7889999999999999999999988764 677666 77777766655
No 95
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.49 E-value=0.00013 Score=61.39 Aligned_cols=28 Identities=46% Similarity=0.737 Sum_probs=25.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGE 71 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~ 71 (455)
+..++|.||+|||||+++..||..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4689999999999999999999998754
No 96
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.48 E-value=0.00013 Score=78.69 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=52.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHHHHH
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHA 125 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a~~~ 125 (455)
.|+|+|++||||||+++.||+.++..+|++|.. + ++..+ ....+....+....|.+.-.++
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~-i-------------~~~~g-----~~i~~i~~~~Ge~~fr~~E~~~ 62 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEE-I-------------ERREG-----RSVRRIFEEDGEEYFRLKEKEL 62 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHH-H-------------HHHcC-----CCHHHHHHHhhhHHHHHHHHHH
Confidence 589999999999999999999999999999964 1 11111 1111112234455677777777
Q ss_pred HHHHHhcCCccEEech
Q 012837 126 TKDVLKKGRVPIVTGG 141 (455)
Q Consensus 126 i~~I~~~gk~pIvvGG 141 (455)
++++.......|-+||
T Consensus 63 l~~l~~~~~~Vis~Gg 78 (488)
T PRK13951 63 LRELVERDNVVVATGG 78 (488)
T ss_pred HHHHhhcCCEEEECCC
Confidence 8888766554444555
No 97
>PRK01184 hypothetical protein; Provisional
Probab=97.48 E-value=0.00011 Score=68.25 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=28.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
++|+|+||+||||||+|. +++++|..++++|
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~ 32 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMG 32 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhh
Confidence 489999999999999987 8899999898875
No 98
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.48 E-value=0.00011 Score=69.90 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=31.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++|+|+|+.||||||++..|++.+|+.++++|.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~ 35 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIY 35 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHH
Confidence 4799999999999999999999889999999964
No 99
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.47 E-value=0.00013 Score=70.05 Aligned_cols=51 Identities=29% Similarity=0.309 Sum_probs=40.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.+-.+||++ .++.+++|+||+|||||||++.||..+ ..|+++| |.|.++..
T Consensus 25 ~l~~~s~~i---~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-----~p~~G~i~~~g~~~~~ 76 (228)
T PRK10584 25 ILTGVELVV---KRGETIALIGESGSGKSTLLAILAGLD-----DGSSGEVSLVGQPLHQ 76 (228)
T ss_pred EEeccEEEE---cCCCEEEEECCCCCCHHHHHHHHHcCC-----CCCCeeEEECCEEccc
Confidence 355699999 788999999999999999999999754 3677776 45655543
No 100
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00014 Score=70.48 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=40.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.++|++ .++.+++|+||+|||||||++.|+..+ ..++++| |.|.++.
T Consensus 17 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~~~ 67 (239)
T cd03296 17 ALDDVSLDI---PSGELVALLGPSGSGKTTLLRLIAGLE-----RPDSGTILFGGEDAT 67 (239)
T ss_pred eeeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEECC
Confidence 455699999 788999999999999999999999754 3567776 5565553
No 101
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.47 E-value=0.00013 Score=68.19 Aligned_cols=49 Identities=31% Similarity=0.399 Sum_probs=39.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|+++| +.|.++
T Consensus 7 il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----~~~~G~i~~~g~~~ 56 (190)
T TIGR01166 7 VLKGLNFAA---ERGEVLALLGANGAGKSTLLLHLNGLL-----RPQSGAVLIDGEPL 56 (190)
T ss_pred eecceeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCceeEEECCEEc
Confidence 345699999 788999999999999999999998754 3577776 455554
No 102
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.46 E-value=0.00013 Score=69.61 Aligned_cols=51 Identities=31% Similarity=0.412 Sum_probs=40.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+. .++++| |.|.++.+
T Consensus 20 ~l~~isl~i---~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 71 (221)
T TIGR02211 20 VLKGVSLSI---GKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQSLSK 71 (221)
T ss_pred eEeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhh
Confidence 344699999 7889999999999999999999997653 567776 45655544
No 103
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.46 E-value=0.00013 Score=69.01 Aligned_cols=48 Identities=38% Similarity=0.491 Sum_probs=38.5
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+-.+||++ .++.+++|+||+|||||||++.|+..+. .|+++| |.|.++
T Consensus 17 l~~vs~~i---~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~ 65 (211)
T cd03225 17 LDDISLTI---KKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKDL 65 (211)
T ss_pred ecceEEEE---cCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEc
Confidence 45699999 7889999999999999999999997543 567776 445444
No 104
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.46 E-value=0.00015 Score=68.67 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=39.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. .++++| |.|.++.
T Consensus 15 ~l~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~~~ 65 (213)
T cd03301 15 ALDDLNLDI---ADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRDVT 65 (213)
T ss_pred eeeceEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 455699999 7889999999999999999999997653 566666 4555553
No 105
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00012 Score=75.99 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=45.5
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccCCC
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSAKP 91 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Takp 91 (455)
...+-++|+++ .++..++|.||+||||||+.+.||. |...|+++| +.|-+|..-.|
T Consensus 18 ~~av~~isl~i---~~Gef~~lLGPSGcGKTTlLR~IAG-----fe~p~~G~I~l~G~~i~~lpp 74 (352)
T COG3842 18 FTAVDDISLDI---KKGEFVTLLGPSGCGKTTLLRMIAG-----FEQPSSGEILLDGEDITDVPP 74 (352)
T ss_pred eeEEecceeee---cCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEECCCCCh
Confidence 34455689999 7889999999999999999999996 667999988 56777765443
No 106
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.45 E-value=0.0001 Score=70.33 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=28.6
Q ss_pred EEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 47 IVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 47 I~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
|+|+||+||||||+|..||+++|...|+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gd 32 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGD 32 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhH
Confidence 7899999999999999999999988888764
No 107
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.45 E-value=0.00013 Score=69.45 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=39.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|-++
T Consensus 17 il~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~ 66 (220)
T cd03263 17 AVDDLSLNV---YKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSI 66 (220)
T ss_pred eecceEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEec
Confidence 455699999 7889999999999999999999997553 566766 445444
No 108
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.45 E-value=0.00013 Score=69.41 Aligned_cols=50 Identities=36% Similarity=0.431 Sum_probs=40.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..++++| |.|.++.
T Consensus 19 il~~~s~~i---~~G~~~~l~G~nGsGKSTLl~~i~Gl~-----~~~~G~i~~~g~~~~ 69 (218)
T cd03255 19 ALKGVSLSI---EKGEFVAIVGPSGSGKSTLLNILGGLD-----RPTSGEVRVDGTDIS 69 (218)
T ss_pred EEeeeEEEE---cCCCEEEEEcCCCCCHHHHHHHHhCCc-----CCCceeEEECCEehh
Confidence 455699999 788999999999999999999999755 3567776 4565554
No 109
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.00011 Score=75.70 Aligned_cols=60 Identities=23% Similarity=0.374 Sum_probs=46.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee-cccccccCCCCccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY-RGLDIGSAKPSSSDRK 97 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY-r~l~I~Takps~~e~~ 97 (455)
.+-.+++++ .++..++|+|||||||||+.+.+|. +...|++.|+ -|-++....|......
T Consensus 18 ~l~~i~l~i---~~Gef~vllGPSGcGKSTlLr~IAG-----Le~~~~G~I~i~g~~vt~l~P~~R~ia 78 (338)
T COG3839 18 VLKDVNLDI---EDGEFVVLLGPSGCGKSTLLRMIAG-----LEEPTSGEILIDGRDVTDLPPEKRGIA 78 (338)
T ss_pred eeecceEEE---cCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEECCCCChhHCCEE
Confidence 345699999 8889999999999999999999997 4568888885 5556655455443433
No 110
>PRK14528 adenylate kinase; Provisional
Probab=97.44 E-value=0.00014 Score=68.48 Aligned_cols=34 Identities=41% Similarity=0.551 Sum_probs=30.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+.|+|.||+||||||+|..||+.++...+++|..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~ 35 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDI 35 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHH
Confidence 4689999999999999999999999988888754
No 111
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.44 E-value=0.00015 Score=69.46 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=29.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.|+|.||+||||||+|..||+++|...|+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~d 33 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGD 33 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCc
Confidence 58999999999999999999999988888764
No 112
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.43 E-value=0.00014 Score=68.94 Aligned_cols=49 Identities=33% Similarity=0.493 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++.+++|+||+|||||||++.|+..+. .|++.| +.|.++
T Consensus 17 il~~is~~i---~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~ 66 (214)
T TIGR02673 17 ALHDVSLHI---RKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDV 66 (214)
T ss_pred eecceeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEc
Confidence 455699999 7889999999999999999999997543 566766 345444
No 113
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.43 E-value=6.9e-05 Score=68.46 Aligned_cols=71 Identities=30% Similarity=0.379 Sum_probs=49.6
Q ss_pred CcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHHHHHHHHHHhc
Q 012837 53 TGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKK 132 (455)
Q Consensus 53 TGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a~~~i~~I~~~ 132 (455)
+||||||+++.||+.|+.+|+..|..- ++..+ .+.-+.-..+....|...-.+++.++...
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i--------------~~~~g-----~si~~i~~~~G~~~fr~~E~~~l~~l~~~ 61 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEI--------------EERTG-----MSISEIFAEEGEEAFRELESEALRELLKE 61 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHH--------------HHHHT-----SHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHH--------------HHHhC-----CcHHHHHHcCChHHHHHHHHHHHHHHhcc
Confidence 599999999999999999999999642 11111 12222222334567888888899999888
Q ss_pred CCccEEechh
Q 012837 133 GRVPIVTGGT 142 (455)
Q Consensus 133 gk~pIvvGGT 142 (455)
+..+|.+||.
T Consensus 62 ~~~VIa~GGG 71 (158)
T PF01202_consen 62 NNCVIACGGG 71 (158)
T ss_dssp SSEEEEE-TT
T ss_pred CcEEEeCCCC
Confidence 7667777664
No 114
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.42 E-value=0.00015 Score=69.08 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=39.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|.++
T Consensus 18 il~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~ 67 (216)
T TIGR00960 18 ALDNLNFHI---TKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQDL 67 (216)
T ss_pred EEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeh
Confidence 345699999 7889999999999999999999997553 567776 455554
No 115
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.42 E-value=0.00028 Score=67.50 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCc-EEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGE-IISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~-iIs~DS 77 (455)
.+.+|+|.|++||||||+|..||.+++.. +++.|.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~ 37 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDY 37 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHH
Confidence 56799999999999999999999999875 455554
No 116
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.42 E-value=0.00013 Score=69.59 Aligned_cols=35 Identities=49% Similarity=0.698 Sum_probs=29.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLN-----GEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS~ 78 (455)
|++|+++|||||||||.+.+||.++. ..+|++|..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 57999999999999999999998773 448888863
No 117
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.42 E-value=0.00015 Score=68.46 Aligned_cols=48 Identities=31% Similarity=0.387 Sum_probs=38.9
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+-.++|++ .++.+++|+||+|||||||.+.||..+ ..|+++| +.|.++
T Consensus 16 l~~v~~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~ 64 (205)
T cd03226 16 LDDLSLDL---YAGEIIALTGKNGAGKTTLAKILAGLI-----KESSGSILLNGKPI 64 (205)
T ss_pred eeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCceEEEECCEEh
Confidence 44699999 788999999999999999999999754 3677776 455444
No 118
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00016 Score=68.63 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=39.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..++++| |.|.++.
T Consensus 15 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----~p~~G~i~~~g~~~~ 65 (213)
T cd03259 15 ALDDLSLTV---EPGEFLALLGPSGCGKTTLLRLIAGLE-----RPDSGEILIDGRDVT 65 (213)
T ss_pred eecceeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCCeEEEECCEEcC
Confidence 355699999 788999999999999999999999754 3567776 4555553
No 119
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00016 Score=69.86 Aligned_cols=49 Identities=35% Similarity=0.502 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ .++.+++|+||+|||||||++.|+..+. .+++.| |.|.++
T Consensus 15 ~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~ 64 (235)
T cd03261 15 VLKGVDLDV---RRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDI 64 (235)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEc
Confidence 455699999 7889999999999999999999997543 566665 455554
No 120
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.41 E-value=0.00016 Score=68.05 Aligned_cols=49 Identities=31% Similarity=0.309 Sum_probs=38.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+..+||++ .++.+++|+||+|||||||.+.||..+. .++++| |.|-++
T Consensus 13 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~ 62 (206)
T TIGR03608 13 ILDDLNLTI---EKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKET 62 (206)
T ss_pred EEeceEEEE---eCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEc
Confidence 455699999 7889999999999999999999997553 566666 444443
No 121
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.40 E-value=0.00017 Score=68.34 Aligned_cols=49 Identities=37% Similarity=0.481 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.||..+. .++++| +.|-++
T Consensus 15 ~l~~~s~~i---~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~ 64 (213)
T cd03262 15 VLKGIDLTV---KKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLKL 64 (213)
T ss_pred eecCceEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEC
Confidence 344699999 7889999999999999999999997553 567776 455544
No 122
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.40 E-value=9.2e-05 Score=64.90 Aligned_cols=47 Identities=38% Similarity=0.526 Sum_probs=36.8
Q ss_pred cceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 32 FATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 32 ~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-++++++ .++.+++|+||+|||||||.+.|+..+. .+++.| +.+.++
T Consensus 2 ~~v~~~i---~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~~ 49 (137)
T PF00005_consen 2 KNVSLEI---KPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKDI 49 (137)
T ss_dssp EEEEEEE---ETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEEG
T ss_pred CceEEEE---cCCCEEEEEccCCCccccceeeeccccc-----ccccccccccccc
Confidence 3578888 7889999999999999999999998664 356665 344444
No 123
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00016 Score=69.75 Aligned_cols=50 Identities=34% Similarity=0.425 Sum_probs=39.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.+||++ .++.+++|+||+|||||||++.||..+ ..++++| |.|.++.
T Consensus 16 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~~~ 66 (241)
T cd03256 16 ALKDVSLSI---NPGEFVALIGPSGAGKSTLLRCLNGLV-----EPTSGSVLIDGTDIN 66 (241)
T ss_pred EEecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCc-----CCCCceEEECCEecc
Confidence 355699999 788999999999999999999999754 3566666 4555543
No 124
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=0.00016 Score=69.70 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=40.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+..+||++ .++.+++|+||+|||||||++.|+..+ ..+++.| +.|.++.
T Consensus 24 il~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~i~ 74 (233)
T PRK11629 24 VLHNVSFSI---GEGEMMAIVGSSGSGKSTLLHLLGGLD-----TPTSGDVIFNGQPMS 74 (233)
T ss_pred eEEeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhcCC-----CCCceEEEECCEEcC
Confidence 455699999 788999999999999999999999754 3677776 4555553
No 125
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.39 E-value=0.00016 Score=69.88 Aligned_cols=50 Identities=28% Similarity=0.430 Sum_probs=39.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..++++| +.|.++.
T Consensus 17 il~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 17 ALKNINLNI---NPGEFVAIIGPSGAGKSTLLRCINRLV-----EPSSGSILLEGTDIT 67 (243)
T ss_pred eeecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCc-----CCCccEEEECCEEhh
Confidence 455699999 788999999999999999999999754 3566666 4555543
No 126
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.39 E-value=0.00015 Score=68.78 Aligned_cols=48 Identities=33% Similarity=0.367 Sum_probs=38.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLD 85 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~ 85 (455)
.+-.+||++ .++.+++|+||+|||||||++.|+..+ ..|+++| |.|.+
T Consensus 14 ~l~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----~p~~G~i~~~g~~ 62 (213)
T cd03235 14 VLEDVSFEV---KPGEFLAIVGPNGAGKSTLLKAILGLL-----KPTSGSIRVFGKP 62 (213)
T ss_pred eeecceeEE---cCCCEEEEECCCCCCHHHHHHHHcCCC-----CCCCCEEEECCcc
Confidence 345699999 788999999999999999999998754 3567766 34443
No 127
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00017 Score=68.26 Aligned_cols=49 Identities=31% Similarity=0.398 Sum_probs=38.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||.+.||..+. .++++| +.|.++
T Consensus 15 ~l~~v~~~i---~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~ 64 (210)
T cd03269 15 ALDDISFSV---EKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPL 64 (210)
T ss_pred EEeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCch
Confidence 345699999 7889999999999999999999997553 566666 344443
No 128
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00017 Score=69.34 Aligned_cols=50 Identities=34% Similarity=0.322 Sum_probs=40.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.++|++ .++.+++|+||+|||||||.+.||..+. .+++.| +.|.++.
T Consensus 20 il~~~s~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 70 (233)
T cd03258 20 ALKDVSLSV---PKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTDLT 70 (233)
T ss_pred eeecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcc
Confidence 455699999 7889999999999999999999997654 566665 4565553
No 129
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.37 E-value=0.00015 Score=68.24 Aligned_cols=32 Identities=44% Similarity=0.628 Sum_probs=27.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcC---CcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLN---GEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~---~~iIs~DS 77 (455)
+|+|+||+||||||||..|+..++ ..+++.|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 589999999999999999999873 56778885
No 130
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.00017 Score=66.82 Aligned_cols=36 Identities=33% Similarity=0.565 Sum_probs=33.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
+.+|+|+|++||||||++..|+++|+.+|+.+|..+
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~H 47 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLH 47 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCC
Confidence 459999999999999999999999999999999753
No 131
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.37 E-value=0.00018 Score=69.48 Aligned_cols=50 Identities=32% Similarity=0.424 Sum_probs=39.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.+||++ .++.+++|+||+|||||||++.|+..+ ..+++.| +.|.++.
T Consensus 16 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----~p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 16 ALDDVSFTV---RPGEFVALLGPNGAGKSTLFSLLTRLY-----VAQEGQISVAGHDLR 66 (236)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCc-----CCCceEEEECCEEcc
Confidence 345699999 788999999999999999999999754 3567776 4555543
No 132
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.37 E-value=0.00019 Score=68.84 Aligned_cols=43 Identities=23% Similarity=0.164 Sum_probs=35.9
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
+-++||++ .++.+++|+||+|||||||.+.|+..+ ..|+++|+
T Consensus 3 l~~vs~~i---~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----~~~sG~i~ 45 (213)
T PRK15177 3 LDKTDFVM---GYHEHIGILAAPGSGKTTLTRLLCGLD-----APDEGDFI 45 (213)
T ss_pred eeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCc-----cCCCCCEE
Confidence 34689999 788999999999999999999999743 46777764
No 133
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.37 E-value=0.00018 Score=68.54 Aligned_cols=49 Identities=31% Similarity=0.489 Sum_probs=38.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|.++
T Consensus 15 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~ 64 (222)
T cd03224 15 ILFGVSLTV---PEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDI 64 (222)
T ss_pred EeeeeeEEE---cCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEc
Confidence 344699999 7889999999999999999999987543 566665 345444
No 134
>PRK02496 adk adenylate kinase; Provisional
Probab=97.37 E-value=0.00016 Score=67.13 Aligned_cols=34 Identities=35% Similarity=0.528 Sum_probs=29.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+.|+|.||+||||||+|..||+.++...++.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~ 35 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDI 35 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHH
Confidence 3589999999999999999999999888877653
No 135
>PRK15453 phosphoribulokinase; Provisional
Probab=97.36 E-value=0.0002 Score=72.31 Aligned_cols=40 Identities=25% Similarity=0.502 Sum_probs=34.2
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCccce
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRLN-----GEIISADSVQV 80 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS~qi 80 (455)
+++.++|+|+|++||||||+|..|++.++ ..+|+.|+..-
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 45778999999999999999999998774 56899998643
No 136
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.36 E-value=0.00024 Score=68.70 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=37.7
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+||++ .++.+++|+||+|||||||++.|+..+ ..+++.| +.|.++.
T Consensus 3 ~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~~ 50 (230)
T TIGR01184 3 GVNLTI---QQGEFISLIGHSGCGKSTLLNLISGLA-----QPTSGGVILEGKQIT 50 (230)
T ss_pred ceeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCceEEECCEECC
Confidence 578998 788999999999999999999999754 3567776 4555543
No 137
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.36 E-value=0.00023 Score=68.17 Aligned_cols=54 Identities=30% Similarity=0.328 Sum_probs=39.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||++.|+..+....-..++++| +.|.++
T Consensus 15 ~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 69 (227)
T cd03260 15 ALKDISLDI---PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDI 69 (227)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEh
Confidence 345699999 788999999999999999999999865100002466665 445444
No 138
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.36 E-value=0.0002 Score=67.76 Aligned_cols=33 Identities=36% Similarity=0.580 Sum_probs=30.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.+|+|+|++||||||++..|++ +|..+|++|.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~ 35 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAI 35 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHH
Confidence 5899999999999999999998 99999999953
No 139
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.0002 Score=68.46 Aligned_cols=49 Identities=27% Similarity=0.392 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.++|++ .++.+++|+||+|||||||.+.||..+ ..|++.| +.|.++
T Consensus 15 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----~~~~G~i~~~g~~~ 64 (220)
T cd03265 15 AVRGVSFRV---RRGEIFGLLGPNGAGKTTTIKMLTTLL-----KPTSGRATVAGHDV 64 (220)
T ss_pred eeeceeEEE---CCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEec
Confidence 344699999 788999999999999999999999754 3667776 445444
No 140
>PRK10908 cell division protein FtsE; Provisional
Probab=97.35 E-value=0.0002 Score=68.57 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=39.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|+++| +.|.++
T Consensus 17 ~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----~~~~G~i~~~g~~i 66 (222)
T PRK10908 17 ALQGVTFHM---RPGEMAFLTGHSGAGKSTLLKLICGIE-----RPSAGKIWFSGHDI 66 (222)
T ss_pred EEeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEEc
Confidence 345699999 788999999999999999999999754 3677776 445554
No 141
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.35 E-value=0.00018 Score=69.28 Aligned_cols=49 Identities=35% Similarity=0.417 Sum_probs=38.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++
T Consensus 15 ~l~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~~ 64 (236)
T cd03219 15 ALDDVSFSV---RPGEIHGLIGPNGAGKTTLFNLISGFL-----RPTSGSVLFDGEDI 64 (236)
T ss_pred EecCceEEe---cCCcEEEEECCCCCCHHHHHHHHcCCC-----CCCCceEEECCEEC
Confidence 455699999 788999999999999999999999754 3566766 445544
No 142
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.35 E-value=0.00022 Score=67.05 Aligned_cols=49 Identities=29% Similarity=0.440 Sum_probs=38.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+..++|++ .++.+++|+||+|||||||++.||..+. .+++.| +.|.++
T Consensus 15 ~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i 64 (195)
T PRK13541 15 NLFDLSITF---LPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCNI 64 (195)
T ss_pred EEEEEEEEE---cCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCccc
Confidence 345689999 7889999999999999999999998653 456665 445444
No 143
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00017 Score=70.52 Aligned_cols=62 Identities=24% Similarity=0.394 Sum_probs=48.4
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccCCCCcccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSAKPSSSDRKE 98 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Takps~~e~~~ 98 (455)
..|..+||++ .++.+++|.||+|+||||+.+.++.... .-+++| |.|-||...+|..--+.|
T Consensus 17 ~~L~gvsl~v---~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 17 QALRGVSLEV---ERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred eEEeeeeeEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCeecCCCCHHHHHhCC
Confidence 4456799999 8899999999999999999999997654 446665 788888776664444444
No 144
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.35 E-value=0.00025 Score=71.61 Aligned_cols=53 Identities=30% Similarity=0.388 Sum_probs=42.4
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
...|.++||++ .++.+++|.||+|||||||.+.|+... ..+++.| +-|.++..
T Consensus 18 ~~~l~~vs~~i---~~Gei~gllG~NGAGKTTllk~l~gl~-----~p~~G~i~i~G~~~~~ 71 (293)
T COG1131 18 KTALDGVSFEV---EPGEIFGLLGPNGAGKTTLLKILAGLL-----KPTSGEILVLGYDVVK 71 (293)
T ss_pred CEEEeceeEEE---cCCeEEEEECCCCCCHHHHHHHHhCCc-----CCCceEEEEcCEeCcc
Confidence 44566799999 888999999999999999999999744 4677776 55665543
No 145
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.35 E-value=0.00022 Score=66.67 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
.+.+++|+||+|||||||+..|+..++..+++.|
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd 35 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGD 35 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCc
Confidence 4678999999999999999999999986555544
No 146
>PRK04040 adenylate kinase; Provisional
Probab=97.34 E-value=0.0002 Score=67.74 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=30.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHc--CCcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRL--NGEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l--~~~iIs~DS~ 78 (455)
+++|+|+|++||||||++..|++.+ +..+++.|+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 4689999999999999999999999 6777777653
No 147
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00023 Score=66.08 Aligned_cols=49 Identities=29% Similarity=0.423 Sum_probs=38.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|.++
T Consensus 15 ~l~~i~~~i---~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~ 64 (178)
T cd03229 15 VLNDVSLNI---EAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDL 64 (178)
T ss_pred EEeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEc
Confidence 455699999 7889999999999999999999997543 566666 345444
No 148
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.34 E-value=0.00026 Score=69.19 Aligned_cols=24 Identities=46% Similarity=0.807 Sum_probs=22.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcC
Q 012837 46 VIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+|+|+|++||||||+|..||+.++
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999873
No 149
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.34 E-value=0.00015 Score=62.14 Aligned_cols=22 Identities=59% Similarity=0.803 Sum_probs=21.2
Q ss_pred EEEEcCCcccHHHHHHHHHHHc
Q 012837 47 IVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 47 I~I~GPTGsGKStLA~~LA~~l 68 (455)
|+|.|++||||||||..|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 150
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.33 E-value=0.00021 Score=68.28 Aligned_cols=50 Identities=32% Similarity=0.416 Sum_probs=39.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..++++| +.|.++.
T Consensus 20 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----~~~~G~i~~~g~~~~ 70 (228)
T cd03257 20 ALDDVSFSI---KKGETLGLVGESGSGKSTLARAILGLL-----KPTSGSIIFDGKDLL 70 (228)
T ss_pred eecCceeEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCceEEECCEEcc
Confidence 355699999 788999999999999999999999754 3567766 4455543
No 151
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.00021 Score=68.27 Aligned_cols=49 Identities=31% Similarity=0.365 Sum_probs=38.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.++|++ .++.+++|+||+|||||||.+.|+..+ ..+++.| |.|.++
T Consensus 19 il~~vs~~i---~~G~~~~i~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~~ 68 (220)
T cd03293 19 ALEDISLSV---EEGEFVALVGPSGCGKSTLLRIIAGLE-----RPTSGEVLVDGEPV 68 (220)
T ss_pred EEeceeEEE---eCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEEC
Confidence 345699999 788999999999999999999999754 3566666 445444
No 152
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.32 E-value=0.00036 Score=66.08 Aligned_cols=39 Identities=36% Similarity=0.566 Sum_probs=29.0
Q ss_pred cCCCCcEEEEEcCCcccHHHHHHHHHHHc---CCcEEEcCcc
Q 012837 40 SSKKEKVIVISGPTGAGKSQLALELAKRL---NGEIISADSV 78 (455)
Q Consensus 40 ~~~~~~iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~DS~ 78 (455)
+..+|.+++|.||+|||||+++..+...+ +..+|++|.+
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 44678899999999999999999999987 5667888864
No 153
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00023 Score=70.08 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=39.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|+++| +.|.++
T Consensus 16 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~ 65 (255)
T PRK11248 16 ALEDINLTL---ESGELLVVLGPSGCGKTTLLNLIAGFV-----PYQHGSITLDGKPV 65 (255)
T ss_pred eEeeeeEEE---CCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCcEEEECCEEC
Confidence 345699999 788999999999999999999999754 3567776 455554
No 154
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.32 E-value=0.00024 Score=67.29 Aligned_cols=50 Identities=30% Similarity=0.429 Sum_probs=39.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. .+++.| |.|-++.
T Consensus 16 ~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~~~ 66 (204)
T PRK13538 16 LFSGLSFTL---NAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEPIR 66 (204)
T ss_pred EEecceEEE---CCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcc
Confidence 455699999 7889999999999999999999998654 566666 4555543
No 155
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.32 E-value=0.00021 Score=66.65 Aligned_cols=32 Identities=38% Similarity=0.559 Sum_probs=29.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+|+|+|++||||||++..|++ +|+.+|++|.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~ 32 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKI 32 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHH
Confidence 489999999999999999998 89999999953
No 156
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00021 Score=67.68 Aligned_cols=48 Identities=29% Similarity=0.353 Sum_probs=37.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++ +++|+||+|||||||++.|+..+ ..++++| +.|.++
T Consensus 15 ~l~~vs~~i---~~g-~~~i~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~~ 63 (211)
T cd03264 15 ALDGVSLTL---GPG-MYGLLGPNGAGKTTLMRILATLT-----PPSSGTIRIDGQDV 63 (211)
T ss_pred EEcceeEEE---cCC-cEEEECCCCCCHHHHHHHHhCCC-----CCCccEEEECCCcc
Confidence 345699999 567 99999999999999999999754 3567776 455444
No 157
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00028 Score=68.52 Aligned_cols=50 Identities=22% Similarity=0.398 Sum_probs=39.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. .+++.| +.|.++.
T Consensus 16 ~l~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 66 (242)
T cd03295 16 AVNNLNLEI---AKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGEDIR 66 (242)
T ss_pred EeeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeEcC
Confidence 345699999 7889999999999999999999997543 566766 4565543
No 158
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.31 E-value=0.00018 Score=69.73 Aligned_cols=33 Identities=36% Similarity=0.466 Sum_probs=27.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcC-------CcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLN-------GEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~-------~~iIs~DS~ 78 (455)
+|+|+||+||||||+|..|+..++ ..+|+.|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 589999999999999999999883 346777764
No 159
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.31 E-value=0.0003 Score=64.95 Aligned_cols=49 Identities=37% Similarity=0.461 Sum_probs=38.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|.++
T Consensus 17 ~l~~~~~~i---~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~ 66 (173)
T cd03246 17 VLRNVSFSI---EPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADI 66 (173)
T ss_pred ceeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEEc
Confidence 344699999 7889999999999999999999997553 566766 344443
No 160
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.31 E-value=0.00026 Score=68.13 Aligned_cols=50 Identities=34% Similarity=0.485 Sum_probs=39.5
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
..+-++||++ .++.+++|+||+|||||||.+.|+..+ ..|+++| +.|.++
T Consensus 21 ~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----~~~~G~i~~~g~~~ 71 (225)
T PRK10247 21 KILNNISFSL---RAGEFKLITGPSGCGKSTLLKIVASLI-----SPTSGTLLFEGEDI 71 (225)
T ss_pred eeeeccEEEE---cCCCEEEEECCCCCCHHHHHHHHhccc-----CCCCCeEEECCEEc
Confidence 3455699999 788999999999999999999999744 3677776 344444
No 161
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00025 Score=70.80 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=42.4
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
+.+-++||++ .++.++.|+|.+||||||+++.|.+-. ...++.| |+|.++.
T Consensus 27 ~avd~Vsf~i---~~ge~~glVGESG~GKSTlgr~i~~L~-----~pt~G~i~f~g~~i~ 78 (268)
T COG4608 27 KAVDGVSFSI---KEGETLGLVGESGCGKSTLGRLILGLE-----EPTSGEILFEGKDIT 78 (268)
T ss_pred EEecceeEEE---cCCCEEEEEecCCCCHHHHHHHHHcCc-----CCCCceEEEcCcchh
Confidence 4556699999 899999999999999999999999854 4677776 6777754
No 162
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.00031 Score=64.79 Aligned_cols=49 Identities=31% Similarity=0.470 Sum_probs=38.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+. .++++| |.|.++
T Consensus 17 ~l~~i~~~i---~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~~ 66 (171)
T cd03228 17 VLKDVSLTI---KPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDL 66 (171)
T ss_pred cccceEEEE---cCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEh
Confidence 455699999 7889999999999999999999998654 566666 344443
No 163
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.30 E-value=0.00025 Score=68.15 Aligned_cols=49 Identities=31% Similarity=0.443 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++
T Consensus 15 ~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~ 64 (232)
T cd03218 15 VVNGVSLSV---KQGEIVGLLGPNGAGKTTTFYMIVGLV-----KPDSGKILLDGQDI 64 (232)
T ss_pred eeccceeEe---cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCCcEEEECCEec
Confidence 455699999 788999999999999999999999754 3567766 445544
No 164
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00027 Score=65.30 Aligned_cols=49 Identities=35% Similarity=0.432 Sum_probs=38.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+..++|++ .++.+++|+||+|||||||.+.||..+. .++++| +.|.++
T Consensus 15 ~l~~~~~~i---~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~ 64 (173)
T cd03230 15 ALDDISLTV---EKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDI 64 (173)
T ss_pred eeeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEc
Confidence 455699999 7889999999999999999999997553 566666 445444
No 165
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.29 E-value=0.00029 Score=67.48 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.+.+|+|+|++||||||++..|+. +|+.++++|..
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i 38 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRV 38 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHH
Confidence 456899999999999999999996 89999999953
No 166
>PRK06893 DNA replication initiation factor; Validated
Probab=97.29 E-value=0.0068 Score=58.84 Aligned_cols=90 Identities=12% Similarity=0.144 Sum_probs=48.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHc-----CCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRL-----NGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKF 118 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l-----~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f 118 (455)
.+.+.|.||+|+|||.|+..+|.++ ++.+++++..+.+. ..+ .+......--++|.++... ...++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~-~~~------~~~~~~~dlLilDDi~~~~--~~~~~ 109 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS-PAV------LENLEQQDLVCLDDLQAVI--GNEEW 109 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh-HHH------HhhcccCCEEEEeChhhhc--CChHH
Confidence 4578999999999999999999875 44455554221100 000 0111122223344333211 11223
Q ss_pred HHHHHHHHHHHHhcCCccEEechh
Q 012837 119 FEDARHATKDVLKKGRVPIVTGGT 142 (455)
Q Consensus 119 ~~~a~~~i~~I~~~gk~pIvvGGT 142 (455)
.......++.+.++|+.+||++++
T Consensus 110 ~~~l~~l~n~~~~~~~~illits~ 133 (229)
T PRK06893 110 ELAIFDLFNRIKEQGKTLLLISAD 133 (229)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCC
Confidence 334455677777777766666554
No 167
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.29 E-value=0.00018 Score=67.34 Aligned_cols=34 Identities=38% Similarity=0.641 Sum_probs=29.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHc-----CCcEEEcCccc
Q 012837 46 VIVISGPTGAGKSQLALELAKRL-----NGEIISADSVQ 79 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l-----~~~iIs~DS~q 79 (455)
+|+|+|++||||||||..|++.+ +..+|+.|...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 58999999999999999999986 45799999763
No 168
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.29 E-value=0.00026 Score=66.59 Aligned_cols=49 Identities=29% Similarity=0.443 Sum_probs=38.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|-++
T Consensus 15 ~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~ 64 (198)
T TIGR01189 15 LFEGLSFTL---NAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTAL 64 (198)
T ss_pred EEeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEc
Confidence 455699999 7889999999999999999999998653 456665 344444
No 169
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.29 E-value=0.00026 Score=68.87 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++.+++|+||+|||||||++.|+..+ ..|++.| +.|.++
T Consensus 18 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----~~~~G~i~~~g~~~ 67 (250)
T PRK11264 18 VLHGIDLEV---KPGEVVAIIGPSGSGKTTLLRCINLLE-----QPEAGTIRVGDITI 67 (250)
T ss_pred eeccceEEE---cCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCCeEEEECCEEc
Confidence 455699999 788999999999999999999999754 3566666 445554
No 170
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.29 E-value=0.0002 Score=72.55 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC-------CcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN-------GEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~-------~~iIs~DS~ 78 (455)
+.+.+|+|+||+||||||+|..|+..+. ..+++.|..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 4678999999999999999998876653 446788875
No 171
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.29 E-value=0.00026 Score=68.55 Aligned_cols=49 Identities=31% Similarity=0.450 Sum_probs=39.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ .++.+++|+||+|||||||++.|+..+ ..+++.| +.|.++
T Consensus 16 il~~~s~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----~~~~G~i~~~g~~~ 65 (240)
T PRK09493 16 VLHNIDLNI---DQGEVVVIIGPSGSGKSTLLRCINKLE-----EITSGDLIVDGLKV 65 (240)
T ss_pred EeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEEC
Confidence 355699999 788999999999999999999999754 4667766 455554
No 172
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.29 E-value=0.00027 Score=65.83 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=39.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|.++.
T Consensus 15 ~l~~vs~~i---~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 65 (182)
T cd03215 15 AVRDVSFEV---RAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVT 65 (182)
T ss_pred eecceEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC
Confidence 445699999 7889999999999999999999998654 567766 4555554
No 173
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.29 E-value=0.00028 Score=66.59 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=38.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++.+++|+||+|||||||...|+..+. .|+++| +.|-++
T Consensus 16 il~~~s~~i---~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~ 65 (200)
T PRK13540 16 LLQQISFHL---PAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQSI 65 (200)
T ss_pred EEeeeeEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCcc
Confidence 455699999 7899999999999999999999997553 567766 344444
No 174
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00025 Score=68.63 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=39.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+..+||++ .++.+++|+||+|||||||.+.||..+ ..++++| +.|.++
T Consensus 18 ~l~~~sl~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----~~~~G~i~~~g~~~ 67 (241)
T PRK10895 18 VVEDVSLTV---NSGEIVGLLGPNGAGKTTTFYMVVGIV-----PRDAGNIIIDDEDI 67 (241)
T ss_pred EEeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCCcEEEECCEEC
Confidence 455699999 788999999999999999999999754 3566666 345444
No 175
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.29 E-value=0.00027 Score=67.60 Aligned_cols=44 Identities=34% Similarity=0.439 Sum_probs=36.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. .++++|+
T Consensus 23 il~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~ 66 (224)
T TIGR02324 23 VLKNVSLTV---NAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRIL 66 (224)
T ss_pred EEecceEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEE
Confidence 355699999 7889999999999999999999997653 5667663
No 176
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.28 E-value=0.00026 Score=68.70 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=36.9
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
+..+-.++|++ .++.+++|+||+|||||||++.||..+. .|++.|
T Consensus 34 ~~il~~vs~~i---~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i 78 (236)
T cd03267 34 VEALKGISFTI---EKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEV 78 (236)
T ss_pred eeeeeceeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEE
Confidence 34455699999 7889999999999999999999997543 566666
No 177
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.00029 Score=66.82 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=37.5
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+||++ .++.+++|.||+|||||||.+.|+..+. .++++| +.|.++
T Consensus 16 ~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~ 62 (211)
T cd03298 16 HFDLTF---AQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVDV 62 (211)
T ss_pred ceEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEc
Confidence 789999 7889999999999999999999997653 567776 345444
No 178
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.00028 Score=68.43 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=39.8
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.-+.+++|++ .++.+++|+||+|||||||++.||..+ ..++++| +.|.++
T Consensus 16 ~il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----~~~~G~i~~~g~~~ 66 (242)
T PRK11124 16 QALFDITLDC---PQGETLVLLGPSGAGKSSLLRVLNLLE-----MPRSGTLNIAGNHF 66 (242)
T ss_pred eeEeeeeeEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEec
Confidence 3455699999 788999999999999999999999754 3567766 455544
No 179
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.27 E-value=0.0003 Score=67.96 Aligned_cols=49 Identities=27% Similarity=0.398 Sum_probs=39.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||++.|+..+ ..++++| +.|.++
T Consensus 18 ~l~~i~~~i---~~Ge~~~l~G~nGsGKSTLl~~i~G~~-----~~~~G~i~~~g~~~ 67 (238)
T cd03249 18 ILKGLSLTI---PPGKTVALVGSSGCGKSTVVSLLERFY-----DPTSGEILLDGVDI 67 (238)
T ss_pred ceeceEEEe---cCCCEEEEEeCCCCCHHHHHHHHhccC-----CCCCCEEEECCEeh
Confidence 345699999 788999999999999999999999765 3677776 455544
No 180
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00061 Score=66.57 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=50.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFF 119 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~ 119 (455)
.+.|+|+||+|+||++|...|-+.+++.+ . =.....|..|...|..+..||+.+.-+...+....+|+
T Consensus 37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~------~--fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fi 104 (231)
T KOG0707|consen 37 FKPIVLSGPSGVGKSTLLKRLREELGGMF------G--FSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFI 104 (231)
T ss_pred CceEEEeCCCCcchhHHHHHHHHHcCCcc------e--EEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhh
Confidence 37899999999999999999999998522 0 02345667788999999999998876654444444443
No 181
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.27 E-value=0.00031 Score=64.69 Aligned_cols=43 Identities=33% Similarity=0.360 Sum_probs=35.8
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
+-.+++++ .++.+++|+||+|||||||++.|+..+. .++++|+
T Consensus 17 l~~i~l~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~ 59 (166)
T cd03223 17 LKDLSFEI---KPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIG 59 (166)
T ss_pred eecCeEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEE
Confidence 44699999 7889999999999999999999997653 5566653
No 182
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.27 E-value=0.00029 Score=66.62 Aligned_cols=49 Identities=29% Similarity=0.358 Sum_probs=38.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.++|++ .++.+++|+||+|||||||.+.|+..+ ..++++| |.|-++
T Consensus 15 ~l~~~~~~i---~~G~~~~i~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~~ 64 (208)
T cd03268 15 VLDDISLHV---KKGEIYGFLGPNGAGKTTTMKIILGLI-----KPDSGEITFDGKSY 64 (208)
T ss_pred eEeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCc-----CCCceEEEECCCcc
Confidence 455699999 788999999999999999999999754 3566666 444443
No 183
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.26 E-value=0.00032 Score=65.19 Aligned_cols=49 Identities=37% Similarity=0.461 Sum_probs=38.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee-ccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY-RGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY-r~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+ ..|+++|+ .|.++
T Consensus 14 ~l~~~~~~i---~~G~~~~l~G~nGsGKStLl~~i~G~~-----~~~~G~v~~~g~~~ 63 (180)
T cd03214 14 VLDDLSLSI---EAGEIVGILGPNGAGKSTLLKTLAGLL-----KPSSGEILLDGKDL 63 (180)
T ss_pred eEeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCcEEEECCEEC
Confidence 345689999 788999999999999999999998754 46777763 44433
No 184
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.26 E-value=0.00029 Score=67.68 Aligned_cols=49 Identities=33% Similarity=0.361 Sum_probs=38.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||++.|+..+. .+++.| +.|.++
T Consensus 15 ~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~ 64 (230)
T TIGR03410 15 ILRGVSLEV---PKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDI 64 (230)
T ss_pred EecceeeEE---CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEC
Confidence 344699999 7889999999999999999999997653 456665 344444
No 185
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.26 E-value=0.00029 Score=55.80 Aligned_cols=23 Identities=48% Similarity=0.801 Sum_probs=21.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHc
Q 012837 46 VIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+|+|+|++||||||++..|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999985
No 186
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.26 E-value=0.00031 Score=63.37 Aligned_cols=44 Identities=32% Similarity=0.299 Sum_probs=36.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
.+..++|++ .++.+++|.||+|||||||...|+..+. .++++|+
T Consensus 15 ~l~~~~~~~---~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~ 58 (144)
T cd03221 15 LLKDISLTI---NPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVT 58 (144)
T ss_pred EEEeeEEEE---CCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEE
Confidence 455689999 7889999999999999999999988653 5666653
No 187
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.25 E-value=0.00031 Score=67.75 Aligned_cols=49 Identities=29% Similarity=0.354 Sum_probs=38.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||++.|+..+. .++++| |.|.++
T Consensus 17 ~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~ 66 (237)
T cd03252 17 ILDNISLRI---KPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHDL 66 (237)
T ss_pred ceeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCeeh
Confidence 345699999 7889999999999999999999997653 566665 455444
No 188
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.25 E-value=0.00027 Score=65.18 Aligned_cols=36 Identities=31% Similarity=0.569 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN-----GEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS 77 (455)
+++.+|+|+|++||||||+|..||..+. ..+++.|.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 4678999999999999999999999873 34455554
No 189
>PRK07667 uridine kinase; Provisional
Probab=97.25 E-value=0.00033 Score=66.21 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN-----GEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS~ 78 (455)
...+|+|+|++||||||+|..|++.++ ..+++.|..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 447899999999999999999999874 347777753
No 190
>PRK06620 hypothetical protein; Validated
Probab=97.25 E-value=0.0082 Score=58.00 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=25.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEE
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIIS 74 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs 74 (455)
..++|.||+|||||+|+..++...+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 578999999999999999999888765544
No 191
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00032 Score=70.02 Aligned_cols=51 Identities=29% Similarity=0.330 Sum_probs=41.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.+-.++|++ .++.+++|+||+|+|||||.+.|+..+. .+++.| +.|.++.+
T Consensus 22 ~l~~vsl~i---~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 22 ALKDVSFSV---YEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMVLSE 73 (279)
T ss_pred ceeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 455699999 7889999999999999999999997653 567776 56766644
No 192
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.25 E-value=0.00032 Score=66.65 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=38.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLD 85 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~ 85 (455)
.+-.++|++ .++.+++|+||+|||||||...|+..+. .+++.| |.|.+
T Consensus 17 ~l~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~ 65 (207)
T PRK13539 17 LFSGLSFTL---AAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGD 65 (207)
T ss_pred EEeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEe
Confidence 355699999 7889999999999999999999998653 566666 44544
No 193
>PF13173 AAA_14: AAA domain
Probab=97.25 E-value=0.00029 Score=61.92 Aligned_cols=91 Identities=26% Similarity=0.325 Sum_probs=51.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcC----CcEEEcCccceecccccccCCCCcccc--ccCccccccccCcccccchhh
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLN----GEIISADSVQVYRGLDIGSAKPSSSDR--KEVPHHLIDILHPCEDYSVGK 117 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~----~~iIs~DS~qiYr~l~I~Takps~~e~--~~v~hhlid~~~~~~~~sv~~ 117 (455)
+++++|.||.||||||++..+++.+. .-++++|......-...-..+ ...+. .+-.+-++|.+ +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~iDEi---------q 71 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLE-YFLELIKPGKKYIFIDEI---------Q 71 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHH-HHHHhhccCCcEEEEehh---------h
Confidence 57899999999999999999998865 446666654332111000000 00000 02233444443 2
Q ss_pred HHHHHHHHHHHHHhcC-CccEEechhhH
Q 012837 118 FFEDARHATKDVLKKG-RVPIVTGGTGL 144 (455)
Q Consensus 118 f~~~a~~~i~~I~~~g-k~pIvvGGTg~ 144 (455)
.+.+....+..+.+.+ ...|++-|+..
T Consensus 72 ~~~~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 72 YLPDWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred hhccHHHHHHHHHHhccCceEEEEccch
Confidence 2334455566666666 56777766654
No 194
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00027 Score=69.81 Aligned_cols=45 Identities=33% Similarity=0.347 Sum_probs=37.2
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
...|-++++++ .++..++|+||+|||||||.+.+|.-. ..+++.|
T Consensus 16 ~~vl~~i~L~v---~~GEfvsilGpSGcGKSTLLriiAGL~-----~p~~G~V 60 (248)
T COG1116 16 VEVLEDINLSV---EKGEFVAILGPSGCGKSTLLRLIAGLE-----KPTSGEV 60 (248)
T ss_pred eEEeccceeEE---CCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCceE
Confidence 44555699999 889999999999999999999999744 4666665
No 195
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00031 Score=69.48 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=39.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++
T Consensus 24 ~l~~isl~i---~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-----~~~~G~i~~~g~~~ 73 (269)
T PRK13648 24 TLKDVSFNI---PKGQWTSIVGHNGSGKSTIAKLMIGIE-----KVKSGEIFYNNQAI 73 (269)
T ss_pred ceeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCceEEEECCEEC
Confidence 355699999 788999999999999999999999754 3567766 345444
No 196
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.24 E-value=0.00032 Score=66.93 Aligned_cols=49 Identities=27% Similarity=0.326 Sum_probs=39.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..++++| |.|.++
T Consensus 26 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----~~~~G~i~~~g~~i 75 (214)
T PRK13543 26 VFGPLDFHV---DAGEALLVQGDNGAGKTTLLRVLAGLL-----HVESGQIQIDGKTA 75 (214)
T ss_pred eeecceEEE---CCCCEEEEEcCCCCCHHHHHHHHhCCC-----CCCCeeEEECCEEc
Confidence 445699999 788999999999999999999999755 3566666 555554
No 197
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.24 E-value=0.00034 Score=66.09 Aligned_cols=43 Identities=35% Similarity=0.403 Sum_probs=36.3
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
+-.+||++ .++.+++|.||+|||||||.+.|+..+. .|+++|+
T Consensus 21 l~~~s~~i---~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~ 63 (204)
T cd03250 21 LKDINLEV---PKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVS 63 (204)
T ss_pred eeeeeEEE---CCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEE
Confidence 44699999 8889999999999999999999998553 5777763
No 198
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.23 E-value=0.00037 Score=66.39 Aligned_cols=49 Identities=33% Similarity=0.364 Sum_probs=38.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||...|+... ..+++.| |.|-++
T Consensus 19 ~l~~i~~~i---~~G~~~~i~G~nGsGKSTLl~~i~G~~-----~~~~G~i~~~g~~~ 68 (220)
T cd03245 19 ALDNVSLTI---RAGEKVAIIGRVGSGKSTLLKLLAGLY-----KPTSGSVLLDGTDI 68 (220)
T ss_pred cccceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCc-----CCCCCeEEECCEEh
Confidence 345699999 788999999999999999999999754 3566665 445443
No 199
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.23 E-value=0.00032 Score=67.55 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.+.+|+|+|+.||||||++..|++.+|..++++|..
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i 40 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTI 40 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHH
Confidence 346899999999999999999999999999999953
No 200
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00035 Score=66.96 Aligned_cols=43 Identities=33% Similarity=0.432 Sum_probs=36.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.+-.++|++ .++.+++|+||+|||||||.+.||..+. .+++.|
T Consensus 18 ~l~~isl~i---~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i 60 (229)
T cd03254 18 VLKDINFSI---KPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQI 60 (229)
T ss_pred cccceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEE
Confidence 445699999 7889999999999999999999997653 566666
No 201
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.23 E-value=0.00038 Score=64.46 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=35.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
-+-.++|++ .++.+++|.||+|||||||++.||.... .++++|
T Consensus 17 ~l~~i~~~i---~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i 59 (178)
T cd03247 17 VLKNLSLEL---KQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEI 59 (178)
T ss_pred ceEEEEEEE---cCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEE
Confidence 355699999 7889999999999999999999997653 456655
No 202
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00036 Score=69.15 Aligned_cols=49 Identities=31% Similarity=0.430 Sum_probs=38.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-+++|++ .++.+++|+||+|||||||.+.|+..+. .+++.| +.|-++
T Consensus 39 il~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~~ 88 (269)
T cd03294 39 GVNDVSLDV---REGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQDI 88 (269)
T ss_pred EeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEc
Confidence 355699999 7889999999999999999999997653 566665 345444
No 203
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.00033 Score=68.07 Aligned_cols=49 Identities=29% Similarity=0.423 Sum_probs=39.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||++.|+..+ ..|++.| +.|.++
T Consensus 18 ~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~i 67 (241)
T PRK14250 18 ILKDISVKF---EGGAIYTIVGPSGAGKSTLIKLINRLI-----DPTEGSILIDGVDI 67 (241)
T ss_pred eeeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCcEEEECCEEh
Confidence 455699999 788999999999999999999999754 3566766 455554
No 204
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.23 E-value=0.00034 Score=67.46 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=38.9
Q ss_pred cceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 32 FATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 32 ~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+++|++ .++.+++|.||+|||||||.+.|+..+.-. ...|+++| +.|.++
T Consensus 3 ~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~~~~~G~i~~~g~~~ 54 (230)
T TIGR02770 3 QDLNLSL---KRGEVLALVGESGSGKSLTCLAILGLLPPG-LTQTSGEILLDGRPL 54 (230)
T ss_pred cceeEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCc-cCccccEEEECCEec
Confidence 3588999 788999999999999999999999765311 11377777 456554
No 205
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.22 E-value=0.00034 Score=69.23 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=36.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. .++++|+
T Consensus 27 il~~isl~i---~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~ 70 (257)
T PRK11247 27 VLNQLDLHI---PAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELL 70 (257)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEE
Confidence 344699999 7889999999999999999999997553 5666653
No 206
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.22 E-value=0.00033 Score=69.64 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=40.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++.
T Consensus 22 ~l~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-----~p~~G~i~~~g~~i~ 72 (280)
T PRK13649 22 ALFDVNLTI---EDGSYTAFIGHTGSGKSTIMQLLNGLH-----VPTQGSVRVDDTLIT 72 (280)
T ss_pred eeeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEEcc
Confidence 455699999 788999999999999999999999754 3567776 4555554
No 207
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.00037 Score=68.53 Aligned_cols=53 Identities=26% Similarity=0.473 Sum_probs=41.0
Q ss_pred hcccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 27 RRRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
..+.|.+++|++ +.+..|+|+||+|||||||.+.|+... ...++.| ..|.++.
T Consensus 16 ~~~aL~~Vnl~I---~~GE~VaiIG~SGaGKSTLLR~lngl~-----d~t~G~i~~~g~~i~ 69 (258)
T COG3638 16 GHQALKDVNLEI---NQGEMVAIIGPSGAGKSTLLRSLNGLV-----DPTSGEILFNGVQIT 69 (258)
T ss_pred CceeeeeEeEEe---CCCcEEEEECCCCCcHHHHHHHHhccc-----CCCcceEEecccchh
Confidence 467788899999 888999999999999999999998733 3445544 4454443
No 208
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00032 Score=69.28 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=39.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+..+||++ .++.+++|+||+|||||||++.|+..+ ..|++.| |.|.++
T Consensus 26 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~~ 75 (265)
T PRK10575 26 LLHPLSLTF---PAGKVTGLIGHNGSGKSTLLKMLGRHQ-----PPSEGEILLDAQPL 75 (265)
T ss_pred EEeeeeeEE---cCCCEEEEECCCCCCHHHHHHHHcCCC-----CCCCCEEEECCEeh
Confidence 455699999 788999999999999999999999754 3566666 455554
No 209
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.00058 Score=66.69 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=32.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-++||++ .++.+++|+||+|||||||++.||..+
T Consensus 19 ~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 19 AVKDVSMDF---PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEecceEEE---cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 455699999 788999999999999999999999865
No 210
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.00035 Score=68.15 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=39.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.++|++ .++.+++|+||+|||||||.+.|+..++..-...|+++| +.|.++
T Consensus 21 il~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 21 ALHDISLEF---EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred eecceeEEE---eCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 455699999 788999999999999999999999754210001356665 445444
No 211
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.20 E-value=0.00038 Score=63.89 Aligned_cols=43 Identities=35% Similarity=0.390 Sum_probs=35.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
-+..++|++ .++.+++|.||+|||||||.+.|+..+ ..++++|
T Consensus 15 vl~~i~~~i---~~Ge~~~l~G~nGsGKSTLl~~i~G~~-----~~~~G~v 57 (163)
T cd03216 15 ALDGVSLSV---RRGEVHALLGENGAGKSTLMKILSGLY-----KPDSGEI 57 (163)
T ss_pred EEeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCeEE
Confidence 445689999 788999999999999999999999754 3566666
No 212
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.20 E-value=0.00035 Score=68.18 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=39.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+..+||++ .++.+++|+||+|||||||.+.|+..+ ..++++| +.|.++
T Consensus 15 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----~~~~G~i~~~g~~i 64 (252)
T TIGR03005 15 VLDGLNFSV---AAGEKVALIGPSGSGKSTILRILMTLE-----PIDEGQIQVEGEQL 64 (252)
T ss_pred EEeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEEc
Confidence 455699999 788999999999999999999999754 3567776 445444
No 213
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.20 E-value=0.00036 Score=68.45 Aligned_cols=48 Identities=33% Similarity=0.419 Sum_probs=38.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLD 85 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~ 85 (455)
.+-.++|++ .++.+++|.||+|||||||++.|+..+. .+++.| |.|.+
T Consensus 21 il~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~ 69 (258)
T PRK11701 21 GCRDVSFDL---YPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRD 69 (258)
T ss_pred eeeeeeEEE---eCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCcc
Confidence 344699999 7899999999999999999999997553 566766 45544
No 214
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00035 Score=69.18 Aligned_cols=49 Identities=24% Similarity=0.326 Sum_probs=38.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++
T Consensus 16 il~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~i 65 (271)
T PRK13638 16 VLKGLNLDF---SLSPVTGLVGANGCGKSTLFMNLSGLL-----RPQKGAVLWQGKPL 65 (271)
T ss_pred cccceEEEE---cCCCEEEEECCCCCCHHHHHHHHcCCC-----CCCccEEEECCEEc
Confidence 455699999 788999999999999999999999755 3566665 345444
No 215
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00037 Score=69.33 Aligned_cols=49 Identities=31% Similarity=0.367 Sum_probs=39.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+. .++++| |.|.++
T Consensus 20 ~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~ 69 (274)
T PRK13647 20 ALKGLSLSI---PEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREV 69 (274)
T ss_pred eeeeEEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEC
Confidence 455699999 7889999999999999999999997553 567776 456554
No 216
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.19 E-value=0.00038 Score=67.27 Aligned_cols=49 Identities=29% Similarity=0.462 Sum_probs=38.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. .+++.| +.|.++
T Consensus 20 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~ 69 (237)
T PRK11614 20 ALHEVSLHI---NQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKDI 69 (237)
T ss_pred eeeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEec
Confidence 455699999 7889999999999999999999997543 456665 455554
No 217
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.19 E-value=0.00038 Score=71.67 Aligned_cols=51 Identities=25% Similarity=0.282 Sum_probs=41.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.+-.+||++ .++.+++|+||+|||||||++.|+..+ ..+++.| +.|.++..
T Consensus 20 il~~vsl~i---~~Gei~~iiG~nGsGKSTLlk~L~Gl~-----~p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 20 ALNNVSLHI---PAGEIFGVIGASGAGKSTLIRCINLLE-----RPTSGRVLVDGQDLTA 71 (343)
T ss_pred EEEeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEECCEECCc
Confidence 455699999 788999999999999999999999754 3677776 56666543
No 218
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.19 E-value=0.0004 Score=66.08 Aligned_cols=50 Identities=32% Similarity=0.363 Sum_probs=39.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.++|++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++.
T Consensus 20 il~~~sl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~~~ 70 (218)
T cd03266 20 AVDGVSFTV---KPGEVTGLLGPNGAGKTTTLRMLAGLL-----EPDAGFATVDGFDVV 70 (218)
T ss_pred eecceEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCc-----CCCCceEEECCEEcc
Confidence 455699999 788999999999999999999999754 3566665 4555543
No 219
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00036 Score=69.18 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=38.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|+++| +.|.++
T Consensus 22 il~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~i 71 (272)
T PRK15056 22 ALRDASFTV---PGGSIAALVGVNGSGKSTLFKALMGFV-----RLASGKISILGQPT 71 (272)
T ss_pred EEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEEh
Confidence 345699999 788999999999999999999999754 3566766 345443
No 220
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.19 E-value=0.0002 Score=64.45 Aligned_cols=29 Identities=45% Similarity=0.533 Sum_probs=25.9
Q ss_pred EEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 49 ISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 49 I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
|.||+||||||+|..||+++|...|+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~ 29 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGD 29 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHH
Confidence 78999999999999999999977777654
No 221
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.19 E-value=0.00037 Score=69.70 Aligned_cols=49 Identities=31% Similarity=0.331 Sum_probs=39.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ .++.+++|+||+|||||||.+.|+..+ ..++++| +.|.++
T Consensus 26 il~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~i 75 (289)
T PRK13645 26 ALNNTSLTF---KKNKVTCVIGTTGSGKSTMIQLTNGLI-----ISETGQTIVGDYAI 75 (289)
T ss_pred eeeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCCceEEECCEEc
Confidence 455699999 788999999999999999999999755 3567776 455554
No 222
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.18 E-value=0.00037 Score=70.32 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=39.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+ ..|++.| +.|.++
T Consensus 8 ~l~~vs~~i---~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~ 57 (302)
T TIGR01188 8 AVDGVNFKV---REGEVFGFLGPNGAGKTTTIRMLTTLL-----RPTSGTARVAGYDV 57 (302)
T ss_pred EEeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEEc
Confidence 355699999 788999999999999999999999754 4677776 456555
No 223
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.18 E-value=0.00035 Score=75.41 Aligned_cols=48 Identities=29% Similarity=0.425 Sum_probs=37.6
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
|-++||++ +++..++|+||||||||||++.|+..+. .+++.| +.|.++
T Consensus 351 L~~isl~i---~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~i~g~~i 399 (529)
T TIGR02868 351 LDGVSLDL---PPGERVAILGPSGSGKSTLLMLLTGLLD-----PLQGEVTLDGVSV 399 (529)
T ss_pred eecceEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEh
Confidence 55688998 8899999999999999999999997553 566665 334443
No 224
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.18 E-value=0.00038 Score=65.39 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=30.7
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHH
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELA 65 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA 65 (455)
+..+-++||++ .++.+++|.||+|||||||.+.++
T Consensus 8 ~~~l~~isl~i---~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 8 VHNLQNLDVSI---PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred eeeecceEEEE---cCCCEEEEECCCCCCHHHHHHHHh
Confidence 44566799999 888999999999999999999885
No 225
>PRK05439 pantothenate kinase; Provisional
Probab=97.18 E-value=0.00061 Score=69.64 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHcC-------CcEEEcCcc
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRLN-------GEIISADSV 78 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l~-------~~iIs~DS~ 78 (455)
..++.+|+|+||+||||||+|..|+..++ ..+|+.|+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34677999999999999999999998663 468999976
No 226
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.18 E-value=0.00042 Score=71.80 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=41.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.+-++||++ .++.+++|+||+|||||||.+.||..+ ..|+++| +.|-++..
T Consensus 17 ~l~~isl~i---~~Ge~~~llGpsGsGKSTLLr~IaGl~-----~p~~G~I~i~g~~i~~ 68 (353)
T PRK10851 17 VLNDISLDI---PSGQMVALLGPSGSGKTTLLRIIAGLE-----HQTSGHIRFHGTDVSR 68 (353)
T ss_pred EEEEeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCcEEEECCEECCC
Confidence 455699999 788999999999999999999999754 4678887 56766643
No 227
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.17 E-value=0.00046 Score=66.08 Aligned_cols=49 Identities=29% Similarity=0.385 Sum_probs=39.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||+..|+..+. .+++.| +.|.++
T Consensus 29 ~l~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~ 78 (226)
T cd03248 29 VLQDVSFTL---HPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKPI 78 (226)
T ss_pred cccceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCch
Confidence 455699999 7889999999999999999999997653 566665 455544
No 228
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.17 E-value=0.0004 Score=68.78 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=39.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+. .|++.| +.|.++.
T Consensus 22 il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 72 (269)
T PRK11831 22 IFDNISLTV---PRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGENIP 72 (269)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcc
Confidence 355699999 7889999999999999999999997553 566666 4555443
No 229
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.17 E-value=0.00038 Score=67.88 Aligned_cols=43 Identities=33% Similarity=0.306 Sum_probs=36.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+. .+++.|
T Consensus 18 ~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i 60 (253)
T TIGR02323 18 GCRDVSFDL---YPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTA 60 (253)
T ss_pred EeecceEEE---eCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEE
Confidence 355699999 7889999999999999999999998653 566665
No 230
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.16 E-value=0.00048 Score=59.93 Aligned_cols=33 Identities=36% Similarity=0.534 Sum_probs=28.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHH
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELA 65 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA 65 (455)
.+..+++++ ..+..++|.||+|||||||+..+.
T Consensus 4 aL~~vsl~i---~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 4 SLHGVLVDV---YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEeeEEEE---cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 345688888 667899999999999999999987
No 231
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.16 E-value=0.00039 Score=68.60 Aligned_cols=50 Identities=30% Similarity=0.347 Sum_probs=40.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.+||++ .++.+++|+||+|||||||.+.||..+ ..++++| |.|.++.
T Consensus 26 il~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 26 VLTNVSLSI---EEGETVGLLGRSGCGKSTLARLLLGLE-----KPAQGTVSFRGQDLY 76 (265)
T ss_pred EeeCceeEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCcEEEECCEEcc
Confidence 455699999 788999999999999999999999754 3677776 4555553
No 232
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.16 E-value=0.00043 Score=65.47 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=35.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. .++++|
T Consensus 15 ~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i 57 (201)
T cd03231 15 LFSGLSFTL---AAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRV 57 (201)
T ss_pred eeccceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEE
Confidence 345699999 7899999999999999999999997653 566666
No 233
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.00041 Score=66.01 Aligned_cols=45 Identities=27% Similarity=0.311 Sum_probs=36.2
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+++|++ .+ .+++|+||+|||||||++.|+..+ ..|++.| +.|.++
T Consensus 16 ~vsl~i---~~-e~~~i~G~nGsGKSTLl~~l~G~~-----~~~~G~i~~~g~~~ 61 (214)
T cd03297 16 KIDFDL---NE-EVTGIFGASGAGKSTLLRCIAGLE-----KPDGGTIVLNGTVL 61 (214)
T ss_pred CceEEE---cc-eeEEEECCCCCCHHHHHHHHhCCC-----CCCCceEEECCEec
Confidence 799999 77 999999999999999999999755 3566665 445444
No 234
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00047 Score=66.29 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=38.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||++.||..+. .++++| +.|.++
T Consensus 17 ~l~~i~~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~ 66 (234)
T cd03251 17 VLRDISLDI---PAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHDV 66 (234)
T ss_pred ceeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEEh
Confidence 345699999 7889999999999999999999997653 566666 345444
No 235
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.15 E-value=0.00046 Score=58.84 Aligned_cols=34 Identities=29% Similarity=0.551 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc---CCcEEEcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL---NGEIISAD 76 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~D 76 (455)
....++|.||+|+|||+++..++..+ +..++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 45689999999999999999999988 44454444
No 236
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.00043 Score=70.84 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=42.3
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
+.+-++||++ .++.+++|+||+|||||||++.|+..+... -..+++.| |.|.++..
T Consensus 21 ~~l~~vsl~i---~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 21 RAVDRISYSV---KQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDLQR 77 (326)
T ss_pred EEEeeeEEEE---CCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEECCc
Confidence 3466799999 889999999999999999999999866411 01356665 67766643
No 237
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.00045 Score=68.44 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=39.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+. .+++.| +.|.++
T Consensus 24 il~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i 73 (271)
T PRK13632 24 ALKNVSFEI---NEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGITI 73 (271)
T ss_pred ceeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEec
Confidence 455699999 7889999999999999999999997653 567766 455555
No 238
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.00047 Score=70.68 Aligned_cols=50 Identities=28% Similarity=0.403 Sum_probs=40.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+|++|||||||++.|+..+. .++++| |.|.++.
T Consensus 30 ~l~~vsl~i---~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~~g~~l~ 80 (327)
T PRK11308 30 ALDGVSFTL---ERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYYQGQDLL 80 (327)
T ss_pred EEeeeEEEE---CCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEEcC
Confidence 455699999 7889999999999999999999998654 456666 5666654
No 239
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.15 E-value=0.00045 Score=65.75 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=38.4
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+..++|++ .++.+++|.||+|||||||.+.|+..+ ..+++.| +.|.++
T Consensus 14 ~~~~s~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----~~~~G~i~~~g~~~ 62 (213)
T TIGR01277 14 PMEFDLNV---ADGEIVAIMGPSGAGKSTLLNLIAGFI-----EPASGSIKVNDQSH 62 (213)
T ss_pred ceeeEEEE---eCCcEEEEECCCCCCHHHHHHHHhcCC-----CCCCcEEEECCEEc
Confidence 34689999 788999999999999999999999754 3566766 345444
No 240
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.00041 Score=67.69 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=39.1
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.-+..++|++ .++.+++|+||+|||||||++.|+..+. .+++.| +.|.++
T Consensus 19 ~~l~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~ 69 (255)
T PRK11300 19 LAVNNVNLEV---REQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQHI 69 (255)
T ss_pred EEEEeeeeEE---cCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEEC
Confidence 3455699999 7889999999999999999999997543 566665 445444
No 241
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.15 E-value=0.0005 Score=70.64 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=41.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.+-++||++ .++.+++|+|++|||||||++.|+..+. .++++| |.|.++..
T Consensus 36 ~l~~vsl~i---~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 36 AVDGVTLRL---YEGETLGVVGESGCGKSTFARAIIGLVK-----ATDGEVAWLGKDLLG 87 (331)
T ss_pred EEeeEEEEE---cCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCcEEEECCEECCc
Confidence 445699999 8899999999999999999999997553 467776 56766643
No 242
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.14 E-value=0.00048 Score=68.26 Aligned_cols=50 Identities=32% Similarity=0.373 Sum_probs=39.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||++.|+..+ ..++++| +.|.++.
T Consensus 27 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~p~sG~i~~~g~~~~ 77 (268)
T PRK10419 27 VLNNVSLSL---KSGETVALLGRSGCGKSTLARLLVGLE-----SPSQGNVSWRGEPLA 77 (268)
T ss_pred eEeceeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCcEEEECCEecc
Confidence 455699999 788999999999999999999999654 3567776 4554443
No 243
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.14 E-value=0.00046 Score=66.78 Aligned_cols=50 Identities=30% Similarity=0.419 Sum_probs=39.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+. .|++.| +.|.++.
T Consensus 17 ~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 17 ALNDLSLYV---DPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTDLT 67 (242)
T ss_pred EeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCeecC
Confidence 355699999 7889999999999999999999997653 566665 4454443
No 244
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00044 Score=68.05 Aligned_cols=49 Identities=39% Similarity=0.509 Sum_probs=38.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||.+.||..+ ..+++.| +.|.++
T Consensus 17 il~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----~p~~G~i~~~g~~~ 66 (258)
T PRK13548 17 LLDDVSLTL---RPGEVVAILGPNGAGKSTLLRALSGEL-----SPDSGEVRLNGRPL 66 (258)
T ss_pred eeeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCCEEEECCEEc
Confidence 455699999 788999999999999999999999754 3566766 445443
No 245
>PLN02674 adenylate kinase
Probab=97.14 E-value=0.00046 Score=68.22 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
..+.|+|+||+||||||+|..||+++|...||++.
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~Gd 64 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGD 64 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhH
Confidence 34678999999999999999999999977666654
No 246
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.00045 Score=67.33 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=39.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEE--cCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIIS--ADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs--~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||.+.||...+ ++. .++++| +.|.++.
T Consensus 18 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 18 ALKGISMEI---EEKSVVAFIGPSGCGKSTFLRLFNRMND--LIPATRLEGEIRIDGRNIY 73 (250)
T ss_pred EEeeeeEEE---eCCCEEEEECCCCCCHHHHHHHHhhhhc--ccCCCCCceEEEECCEecc
Confidence 455699999 7889999999999999999999996432 112 245665 4565553
No 247
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.14 E-value=0.00052 Score=65.40 Aligned_cols=48 Identities=35% Similarity=0.432 Sum_probs=37.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLD 85 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~ 85 (455)
-+-.+||++ .++.+++|+||+|||||||.+.||..+. .+++.| +.|.+
T Consensus 19 ~l~~i~~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~ 67 (221)
T cd03244 19 VLKNISFSI---KPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVD 67 (221)
T ss_pred cccceEEEE---CCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEE
Confidence 344699999 7889999999999999999999997543 455655 34433
No 248
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.13 E-value=0.00046 Score=66.52 Aligned_cols=44 Identities=36% Similarity=0.312 Sum_probs=36.2
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.-+-.++|++ .++.+++|+||+|||||||.+.|+..+ ..+++.|
T Consensus 36 ~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----~p~~G~i 79 (224)
T cd03220 36 WALKDVSFEV---PRGERIGLIGRNGAGKSTLLRLLAGIY-----PPDSGTV 79 (224)
T ss_pred EEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCceEE
Confidence 3455699999 788999999999999999999999744 3566665
No 249
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.13 E-value=0.00049 Score=71.16 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=42.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccC
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSA 89 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Ta 89 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+... ..|+++| +.|.++...
T Consensus 20 ~L~~vsl~i---~~Gei~gIiG~sGaGKSTLlr~I~gl~-----~p~~G~I~i~G~~i~~~ 72 (343)
T TIGR02314 20 ALNNVSLHV---PAGQIYGVIGASGAGKSTLIRCVNLLE-----RPTSGSVIVDGQDLTTL 72 (343)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCceEEEECCEECCcC
Confidence 455699999 788999999999999999999999754 4788887 567666543
No 250
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.13 E-value=0.00048 Score=67.81 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=36.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
-+-.++|++ .++.+++|+||+|||||||.+.||..+. .+++.|+
T Consensus 19 vl~~vs~~i---~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~ 62 (251)
T PRK09544 19 VLSDVSLEL---KPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIK 62 (251)
T ss_pred EEEeEEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEE
Confidence 455699999 7889999999999999999999997543 5666653
No 251
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.13 E-value=0.00053 Score=65.41 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=38.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee-ccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY-RGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY-r~l~I 86 (455)
-+-.++|++ .++.+++|+||+|||||||...|+..+. .++++|+ .+.++
T Consensus 16 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~ 65 (218)
T cd03290 16 TLSNINIRI---PTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKNE 65 (218)
T ss_pred ceeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCccc
Confidence 344699999 7889999999999999999999997653 5666663 34333
No 252
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.12 E-value=0.00068 Score=64.65 Aligned_cols=53 Identities=28% Similarity=0.441 Sum_probs=41.4
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccCCCCc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSAKPSS 93 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Takps~ 93 (455)
.+.|++ ..+.+++|+||+|||||||...+|. |.-.+|+.| ..|.+++...|..
T Consensus 17 ~fdl~v---~~ge~vAi~GpSGaGKSTLLnLIAG-----F~~P~~G~i~i~g~d~t~~~P~~ 70 (231)
T COG3840 17 RFDLTV---PAGEIVAILGPSGAGKSTLLNLIAG-----FETPASGEILINGVDHTASPPAE 70 (231)
T ss_pred EEEEee---cCCcEEEEECCCCccHHHHHHHHHh-----ccCCCCceEEEcCeecCcCCccc
Confidence 467777 6788999999999999999999997 445666665 5677777666643
No 253
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.12 E-value=0.00049 Score=67.48 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=39.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||++.|+..+. .+++.| +.|.++
T Consensus 20 ~l~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~ 69 (257)
T PRK10619 20 VLKGVSLQA---NAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTI 69 (257)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEc
Confidence 455699999 7889999999999999999999998653 566665 455444
No 254
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.12 E-value=0.0012 Score=59.90 Aligned_cols=23 Identities=43% Similarity=0.718 Sum_probs=21.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHc
Q 012837 46 VIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+|+|+|++||||||+|..|++.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998
No 255
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.00051 Score=67.95 Aligned_cols=55 Identities=29% Similarity=0.461 Sum_probs=39.7
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
..+-++||++ .++.+++|+||+|||||||.+.|+..+.......|+++| +.|.++
T Consensus 34 ~il~~vsl~i---~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 34 EAIKGIDMQF---EKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred eeEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 3455699999 788999999999999999999999865310001356665 455554
No 256
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.00051 Score=68.74 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=39.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.|-+++|++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++.
T Consensus 22 ~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-----~p~~G~i~~~g~~i~ 72 (286)
T PRK13646 22 AIHDVNTEF---EQGKYYAIVGQTGSGKSTLIQNINALL-----KPTTGTVTVDDITIT 72 (286)
T ss_pred ceeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCCcEEEECCEECc
Confidence 455699999 788999999999999999999999754 3566666 4565553
No 257
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.11 E-value=0.00054 Score=65.55 Aligned_cols=50 Identities=20% Similarity=0.405 Sum_probs=39.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee-cccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY-RGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY-r~l~I~ 87 (455)
.+-.+||++ .++.+++|+||+|||||||...|+..+ ..++++|+ .|.++.
T Consensus 20 il~~vs~~i---~~G~~~~I~G~nGsGKStLl~~l~G~~-----~~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 20 VLFDINLEI---NPGEIVILTGPSGSGKTTLLTLIGGLR-----SVQEGSLKVLGQELY 70 (220)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCeEEEECCEEhH
Confidence 345699999 788999999999999999999999754 35677764 455443
No 258
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.00056 Score=65.83 Aligned_cols=49 Identities=31% Similarity=0.406 Sum_probs=38.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+..++|++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++
T Consensus 16 ~l~~i~~~i---~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-----~~~~G~v~~~g~~~ 65 (236)
T cd03253 16 VLKDVSFTI---PAGKKVAIVGPSGSGKSTILRLLFRFY-----DVSSGSILIDGQDI 65 (236)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhccc-----CCCCCEEEECCEEh
Confidence 345699999 788999999999999999999999754 3566666 344443
No 259
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.10 E-value=0.0005 Score=69.37 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=39.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|++.| +.|.++
T Consensus 19 ~l~~vsl~i---~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~ 68 (303)
T TIGR01288 19 VVNDLSFTI---ARGECFGLLGPNGAGKSTIARMLLGMI-----SPDRGKITVLGEPV 68 (303)
T ss_pred EEcceeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEEC
Confidence 455699999 788999999999999999999999754 3677776 345554
No 260
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.00052 Score=68.24 Aligned_cols=50 Identities=38% Similarity=0.478 Sum_probs=40.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..++++| +.|.++.
T Consensus 17 ~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~~ 67 (274)
T PRK13644 17 ALENINLVI---KKGEYIGIIGKNGSGKSTLALHLNGLL-----RPQKGKVLVSGIDTG 67 (274)
T ss_pred eeeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCCceEEECCEECC
Confidence 455799999 788999999999999999999999754 3677776 5566554
No 261
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.10 E-value=0.00052 Score=67.91 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=39.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..+++.| |.|.++
T Consensus 28 ~l~~vsl~i---~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~ 77 (267)
T PRK15112 28 AVKPLSFTL---REGQTLAIIGENGSGKSTLAKMLAGMI-----EPTSGELLIDDHPL 77 (267)
T ss_pred eeeeeeEEe---cCCCEEEEEcCCCCCHHHHHHHHhCCC-----CCCCCEEEECCEEC
Confidence 355699999 788999999999999999999999755 3567766 445544
No 262
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.00054 Score=66.09 Aligned_cols=46 Identities=33% Similarity=0.416 Sum_probs=37.3
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+||++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|-++
T Consensus 17 ~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~~ 63 (232)
T PRK10771 17 RFDLTV---ERGERVAILGPSGAGKSTLLNLIAGFL-----TPASGSLTLNGQDH 63 (232)
T ss_pred eeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCceEEECCeec
Confidence 689999 788999999999999999999999754 3566665 445444
No 263
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.10 E-value=0.00062 Score=64.43 Aligned_cols=49 Identities=43% Similarity=0.504 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|.||+|||||||.+.|+..+ ..+++.| +.|.++
T Consensus 23 ~l~~isl~i---~~G~~~~i~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~~~g~~~ 72 (207)
T cd03369 23 VLKNVSFKV---KAGEKIGIVGRTGAGKSTLILALFRFL-----EAEEGKIEIDGIDI 72 (207)
T ss_pred cccCceEEE---CCCCEEEEECCCCCCHHHHHHHHhccc-----CCCCCeEEECCEEh
Confidence 455699999 788999999999999999999999754 3566665 455544
No 264
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.00051 Score=69.72 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=36.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.+..++|++ .++.+++|+||+|||||||++.|+..+ ..+++.|
T Consensus 22 ~l~~vsl~i---~~Ge~v~iiG~nGsGKSTLl~~L~Gl~-----~p~~G~i 64 (305)
T PRK13651 22 ALDNVSVEI---NQGEFIAIIGQTGSGKTTFIEHLNALL-----LPDTGTI 64 (305)
T ss_pred ceeeeEEEE---eCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCCcEE
Confidence 455699999 788999999999999999999999754 3566665
No 265
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.09 E-value=0.00056 Score=66.58 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=31.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-.+||++ .++.+++|+||+|||||||++.|+..+
T Consensus 16 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 16 ALKNINLDI---PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred eecceeEEE---CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345699999 788999999999999999999999755
No 266
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.09 E-value=0.00091 Score=67.05 Aligned_cols=81 Identities=26% Similarity=0.317 Sum_probs=42.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLN-----GEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFF 119 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~ 119 (455)
++|+|+|.+|||||++|..|++.+. ..+|+-|++.+ +--.....-......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~------------------------~~~~y~~~~~Ek~~R 57 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGI------------------------DRNDYADSKKEKEAR 57 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-------------------------TTSSS--GGGHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccccc------------------------chhhhhchhhhHHHH
Confidence 5899999999999999999999763 22344333221 000000111222334
Q ss_pred HHHHHHHHHHHhcCCccEEechhhHHHHHHHh
Q 012837 120 EDARHATKDVLKKGRVPIVTGGTGLYLRWFIY 151 (455)
Q Consensus 120 ~~a~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~ 151 (455)
......++..+.++.++|+.+ .+|++++=+
T Consensus 58 ~~l~s~v~r~ls~~~iVI~Dd--~nYiKg~RY 87 (270)
T PF08433_consen 58 GSLKSAVERALSKDTIVILDD--NNYIKGMRY 87 (270)
T ss_dssp HHHHHHHHHHHTT-SEEEE-S-----SHHHHH
T ss_pred HHHHHHHHHhhccCeEEEEeC--CchHHHHHH
Confidence 445566677777777666654 668888744
No 267
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.09 E-value=0.00056 Score=65.46 Aligned_cols=43 Identities=33% Similarity=0.378 Sum_probs=36.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.+-.++|++ .++.+++|+||+|||||||...|+..+ ..++++|
T Consensus 15 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----~~~~G~i 57 (223)
T TIGR03740 15 AVNNISLTV---PKNSVYGLLGPNGAGKSTLLKMITGIL-----RPTSGEI 57 (223)
T ss_pred EEeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCceEE
Confidence 355689999 788999999999999999999999755 3566666
No 268
>PRK13975 thymidylate kinase; Provisional
Probab=97.09 E-value=0.00063 Score=63.43 Aligned_cols=27 Identities=44% Similarity=0.621 Sum_probs=25.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
+++|+|.||.||||||++..||+.++.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999999984
No 269
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.00058 Score=69.93 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=42.2
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
+.+-++||++ .++.+++|+||+|||||||++.|+..+.-. -..+++.| |.|.++..
T Consensus 21 ~~l~~vsl~i---~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 21 KAVDRVSMTL---TEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLLR 77 (330)
T ss_pred EEEeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEECCc
Confidence 3455699999 889999999999999999999999865311 01356665 56766643
No 270
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.09 E-value=0.00052 Score=67.18 Aligned_cols=50 Identities=34% Similarity=0.378 Sum_probs=38.7
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
..+-.+||++ .++.+++|+||+|||||||.+.|+..+. .+++.| |.|-++
T Consensus 16 ~il~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~ 66 (255)
T PRK11231 16 RILNDLSLSL---PTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKPI 66 (255)
T ss_pred EEEeeeeeEE---cCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEEh
Confidence 3455699999 7889999999999999999999997543 456665 444433
No 271
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.0006 Score=68.46 Aligned_cols=50 Identities=30% Similarity=0.330 Sum_probs=40.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.|-+++|++ .++.+++|+||+|||||||.+.|+..+ ..+++.| |.|.++.
T Consensus 22 ~L~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~i~ 72 (290)
T PRK13634 22 ALYDVNVSI---PSGSYVAIIGHTGSGKSTLLQHLNGLL-----QPTSGTVTIGERVIT 72 (290)
T ss_pred ceeeEEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCCcEEEECCEECc
Confidence 455799999 889999999999999999999999754 3567766 5566653
No 272
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00055 Score=71.03 Aligned_cols=51 Identities=25% Similarity=0.314 Sum_probs=41.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.+-+++|++ .++.+++|.||+|||||||.+.||..+ ..|++.| +.|-++..
T Consensus 19 ~l~~vsl~i---~~Ge~~~llG~sGsGKSTLLr~iaGl~-----~p~~G~I~~~g~~i~~ 70 (356)
T PRK11650 19 VIKGIDLDV---ADGEFIVLVGPSGCGKSTLLRMVAGLE-----RITSGEIWIGGRVVNE 70 (356)
T ss_pred EEeeeeEEE---cCCCEEEEECCCCCcHHHHHHHHHCCC-----CCCceEEEECCEECCC
Confidence 345699999 788999999999999999999999855 3677777 56666643
No 273
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.08 E-value=0.00057 Score=70.12 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=41.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.+-++||++ .++.+++|+|++|||||||++.|+..+.-.- ..++.| |.|-++..
T Consensus 31 ~l~~vsl~i---~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~--~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 31 AVNDLNFSL---RAGETLGIVGESGSGKSQTAFALMGLLAANG--RIGGSATFNGREILN 85 (330)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCchHHHHHHHHHcCCCCCC--CCCeEEEECCEECCc
Confidence 455699999 7899999999999999999999998764210 126665 66766643
No 274
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00056 Score=68.50 Aligned_cols=50 Identities=26% Similarity=0.354 Sum_probs=40.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++++++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|.++.
T Consensus 22 ~l~~vsl~i---~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 72 (287)
T PRK13641 22 GLDNISFEL---EEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYHIT 72 (287)
T ss_pred ceeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECc
Confidence 455699999 7889999999999999999999997553 577776 4555553
No 275
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.00067 Score=67.10 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=38.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ .++.+++|+||+|||||||.+.|+..+...-=-.|+++| +.|.++
T Consensus 34 il~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i 88 (267)
T PRK14235 34 ALFDVDLDI---PEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI 88 (267)
T ss_pred EEEEEEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEC
Confidence 355699999 788999999999999999999999765310000256665 345444
No 276
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.0005 Score=65.23 Aligned_cols=53 Identities=28% Similarity=0.386 Sum_probs=39.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.++|++ .++.+++|+||+|||||||...|+..+... ..++++| +.|.++.
T Consensus 22 il~~~s~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~~~~G~i~i~g~~~~ 75 (202)
T cd03233 22 ILKDFSGVV---KPGEMVLVLGRPGSGCSTLLKALANRTEGN--VSVEGDIHYNGIPYK 75 (202)
T ss_pred eeeeEEEEE---CCCcEEEEECCCCCCHHHHHHHhcccCCCC--CCcceEEEECCEECc
Confidence 344699999 788999999999999999999999865310 1466665 4455543
No 277
>PLN02459 probable adenylate kinase
Probab=97.07 E-value=0.00065 Score=67.82 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++..|+|+||+||||||+|..||+.++...|+++.
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gd 62 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGD 62 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcH
Confidence 344668889999999999999999999977666553
No 278
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.07 E-value=0.00052 Score=71.12 Aligned_cols=51 Identities=31% Similarity=0.373 Sum_probs=41.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.+-+++|++ ..+.+++|.||+|||||||.+.||... ..|+++| +.|-++..
T Consensus 19 ~l~~vs~~i---~~Ge~~~l~GpsGsGKSTLLr~iaGl~-----~p~~G~I~i~g~~~~~ 70 (353)
T TIGR03265 19 ALKDISLSV---KKGEFVCLLGPSGCGKTTLLRIIAGLE-----RQTAGTIYQGGRDITR 70 (353)
T ss_pred EEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHCCC-----CCCceEEEECCEECCC
Confidence 345699999 778999999999999999999999754 4778877 45666543
No 279
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.07 E-value=0.00045 Score=64.62 Aligned_cols=33 Identities=36% Similarity=0.543 Sum_probs=30.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+|+|+|+.||||||++..|++..++.+|++|.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~ 33 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKI 33 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHH
Confidence 489999999999999999999877999999964
No 280
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0005 Score=70.23 Aligned_cols=36 Identities=44% Similarity=0.579 Sum_probs=32.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
+-.|.++||||||||-||..||+.++.+|--+|+-.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATt 132 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATT 132 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccc
Confidence 346999999999999999999999999998888654
No 281
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.00059 Score=68.37 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=40.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+ ..++++| +.|.++.+
T Consensus 22 ~l~~vs~~i---~~Ge~~~i~G~nGaGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 22 ALDNVNIEI---EDGEFVGLIGHTGSGKSTLIQHLNGLL-----KPTSGKIIIDGVDITD 73 (287)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCccEEEECCEECCC
Confidence 455699999 788999999999999999999999754 3567776 56666543
No 282
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.06 E-value=0.00073 Score=65.53 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=39.0
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.-+..+||++ .++.+++|+||+|||||||...|+..+ ..++++| +.|.++
T Consensus 14 ~il~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~i~G~~-----~~~~G~i~i~g~~~ 64 (237)
T TIGR00968 14 QALDDVNLEV---PTGSLVALLGPSGSGKSTLLRIIAGLE-----QPDSGRIRLNGQDA 64 (237)
T ss_pred eeeeeEEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCceEEEECCEEc
Confidence 3455699999 788999999999999999999999754 3455655 445554
No 283
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.06 E-value=0.00056 Score=65.66 Aligned_cols=52 Identities=29% Similarity=0.433 Sum_probs=37.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-+++|++ .++.+++|+||+|||||||++.|+..+... -.++++| +.|.++
T Consensus 22 ~l~~vsl~i---~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~--~~~~G~i~~~g~~~ 74 (226)
T cd03234 22 ILNDVSLHV---ESGQVMAILGSSGSGKTTLLDAISGRVEGG--GTTSGQILFNGQPR 74 (226)
T ss_pred cccCceEEE---cCCeEEEEECCCCCCHHHHHHHHhCccCCC--CCCceEEEECCEEC
Confidence 344689999 788999999999999999999999754200 0355655 344443
No 284
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.00059 Score=67.85 Aligned_cols=49 Identities=33% Similarity=0.464 Sum_probs=40.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+ ..++++| |.|.++
T Consensus 17 ~l~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-----~~~~G~i~~~g~~~ 66 (275)
T PRK13639 17 ALKGINFKA---EKGEMVALLGPNGAGKSTLFLHFNGIL-----KPTSGEVLIKGEPI 66 (275)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCccEEEECCEEC
Confidence 455699999 788999999999999999999998754 3677777 566655
No 285
>PLN02348 phosphoribulokinase
Probab=97.06 E-value=0.00062 Score=71.52 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
.++.+|+|+|++||||||+|..|+..++.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45678999999999999999999999963
No 286
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.06 E-value=0.00035 Score=72.71 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=40.9
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc--cce-ecccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS--VQV-YRGLDIG 87 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS--~qi-Yr~l~I~ 87 (455)
..+-+++|++ ..+.+++|+||+|||||||.+.||..+ ..|+ ++| +.|-++.
T Consensus 19 ~~l~~vsl~i---~~Ge~~~llGpsGsGKSTLLr~iaGl~-----~p~~~~G~i~~~g~~~~ 72 (362)
T TIGR03258 19 TVLDDLSLEI---EAGELLALIGKSGCGKTTLLRAIAGFV-----KAAGLTGRIAIADRDLT 72 (362)
T ss_pred EEEeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCCCEEEEECCEECC
Confidence 3456799999 778899999999999999999999644 4677 776 5666653
No 287
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.05 E-value=0.00062 Score=67.89 Aligned_cols=49 Identities=31% Similarity=0.305 Sum_probs=39.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++|+++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++
T Consensus 22 ~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~i 71 (279)
T PRK13650 22 TLNDVSFHV---KQGEWLSIIGHNGSGKSTTVRLIDGLL-----EAESGQIIIDGDLL 71 (279)
T ss_pred eeeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCCcEEEECCEEC
Confidence 455699999 788999999999999999999999754 3566665 455555
No 288
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.05 E-value=0.00064 Score=66.60 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++.+++|+||+|||||||++.|+..+... .-.|++.| +.|.++
T Consensus 18 il~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~~~G~i~~~g~~i 71 (254)
T PRK10418 18 LVHGVSLTL---QRGRVLALVGGSGSGKSLTCAAALGILPAG-VRQTAGRVLLDGKPV 71 (254)
T ss_pred eecceEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCCcCCEEEECCeec
Confidence 344699999 788999999999999999999999865311 01166766 345444
No 289
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.05 E-value=0.018 Score=55.27 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
....++|.||+|||||+||..++.+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 290
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.04 E-value=0.00061 Score=66.73 Aligned_cols=50 Identities=28% Similarity=0.366 Sum_probs=38.9
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
..+-.+||++ .++.+++|+||+|||||||++.|+..+. .+++.| +.|.++
T Consensus 15 ~il~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~ 65 (256)
T TIGR03873 15 LIVDGVDVTA---PPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVDL 65 (256)
T ss_pred EEEeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEEc
Confidence 3455699999 7899999999999999999999997653 456655 344443
No 291
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00064 Score=69.47 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=40.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-+++|++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|.+++
T Consensus 41 ~L~~vsl~i---~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~~~ 91 (320)
T PRK13631 41 ALNNISYTF---EKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIYIG 91 (320)
T ss_pred ceeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEEcc
Confidence 455699999 7889999999999999999999997553 566666 4555554
No 292
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00064 Score=68.17 Aligned_cols=49 Identities=31% Similarity=0.370 Sum_probs=39.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||++.|+..+ ..+++.| +.|.++
T Consensus 21 ~l~~vsl~i---~~Ge~v~i~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~i 70 (288)
T PRK13643 21 ALFDIDLEV---KKGSYTALIGHTGSGKSTLLQHLNGLL-----QPTEGKVTVGDIVV 70 (288)
T ss_pred ceeeeEEEE---cCCCEEEEECCCCChHHHHHHHHhcCC-----CCCCcEEEECCEEC
Confidence 455699999 788999999999999999999999754 3677776 456655
No 293
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.00061 Score=69.93 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=40.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.|-+++|++ .++.+++|+||+|||||||...|+......--..|+++| +.|.++.
T Consensus 97 ~L~~is~~I---~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 97 VLHDLNLDI---KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 455699999 788999999999999999999999765310001355665 4666653
No 294
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.03 E-value=0.0056 Score=63.42 Aligned_cols=32 Identities=38% Similarity=0.523 Sum_probs=25.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCC------cEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNG------EIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~------~iIs~DS 77 (455)
+++++|++||||||++..|+..+.. .+++.|-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd 38 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence 4689999999999999999987752 2666664
No 295
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00065 Score=66.29 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=39.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+.-.-.-.|+++| +.|.++.
T Consensus 19 ~l~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 19 VIKGVDLKI---PQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred eeecceEEE---cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 455699999 788999999999999999999999765310000246666 4555553
No 296
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.02 E-value=0.00063 Score=66.62 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=45.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARH 124 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a~~ 124 (455)
.-+++.||+|+||||||..+|.+++..|....+-.+-+.-++...- .....-.=-|||.+ +.|-....+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il---~~l~~~~ILFIDEI--------HRlnk~~qe 119 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAIL---TNLKEGDILFIDEI--------HRLNKAQQE 119 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHH---HT--TT-EEEECTC--------CC--HHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHH---HhcCCCcEEEEech--------hhccHHHHH
Confidence 4589999999999999999999999876443321111111111000 00000011244443 234444556
Q ss_pred HHHHHHhcCCccEEec
Q 012837 125 ATKDVLKKGRVPIVTG 140 (455)
Q Consensus 125 ~i~~I~~~gk~pIvvG 140 (455)
++-..++.|.+-|++|
T Consensus 120 ~LlpamEd~~idiiiG 135 (233)
T PF05496_consen 120 ILLPAMEDGKIDIIIG 135 (233)
T ss_dssp HHHHHHHCSEEEEEBS
T ss_pred HHHHHhccCeEEEEec
Confidence 6667778888878776
No 297
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00066 Score=66.13 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-+++|++ .++.+++|+||+|||||||.+.||..+. -...+++.| +.|.++.
T Consensus 17 ~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~~~~G~i~~~g~~i~ 70 (246)
T PRK14269 17 ALFDINMQI---EQNKITALIGASGCGKSTFLRCFNRMND--KIAKIDGLVEIEGKDVK 70 (246)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCCceEEEECCEecc
Confidence 345699999 7889999999999999999999997542 012445555 4455553
No 298
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.0007 Score=66.87 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=39.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.++|++ .++.+++|+||+|||||||.+.||..+...--..|++.| +.|.++.
T Consensus 36 il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 36 AVNDISMDI---EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred eeeceEEEE---cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 445699999 788999999999999999999999854200001456665 3455543
No 299
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00065 Score=66.16 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=31.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..
T Consensus 20 ~l~~~s~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 20 ALNSVSLDF---YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 455699999 78899999999999999999999875
No 300
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.01 E-value=0.00066 Score=74.07 Aligned_cols=51 Identities=31% Similarity=0.448 Sum_probs=40.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceec-cccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYR-GLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr-~l~I~T 88 (455)
.+-++||++ +++..++|+||||||||||+..|++-++ .++++|+= |.+|..
T Consensus 344 vl~~is~~i---~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-----~~~G~I~idg~dI~~ 395 (567)
T COG1132 344 VLKDISFSI---EPGEKVAIVGPSGSGKSTLIKLLLRLYD-----PTSGEILIDGIDIRD 395 (567)
T ss_pred cccCceEEE---cCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCEehhh
Confidence 344589998 8889999999999999999999998765 46666643 555543
No 301
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.0007 Score=65.50 Aligned_cols=29 Identities=52% Similarity=0.629 Sum_probs=26.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcE
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEI 72 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~i 72 (455)
..+|+|.||-|+||||||..||++++...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~ 32 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKV 32 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCce
Confidence 57899999999999999999999998443
No 302
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.01 E-value=0.00065 Score=70.81 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=41.4
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
..+-++||++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|-++.
T Consensus 7 ~~l~~vs~~i---~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~i~ 58 (363)
T TIGR01186 7 KGVNDADLAI---AKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGENIM 58 (363)
T ss_pred eeEEeeEEEE---cCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 3455699999 8899999999999999999999998653 677776 4566654
No 303
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0013 Score=60.59 Aligned_cols=30 Identities=37% Similarity=0.638 Sum_probs=28.1
Q ss_pred EcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 50 SGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 50 ~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
+|.+||||||++..||++++++||..|..+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlH 30 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLH 30 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccC
Confidence 489999999999999999999999999864
No 304
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0012 Score=67.40 Aligned_cols=71 Identities=24% Similarity=0.372 Sum_probs=51.1
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC---CcEEEcCccceecccccccCCCCccccccCcccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN---GEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~---~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid 105 (455)
+.+-++||++ .++.+++|+|-+|||||+++..+...++ +.+++. + -+|.|-++.+... +++..+...-|.
T Consensus 19 ~av~~vs~~i---~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G-~-i~f~g~~l~~l~~--~~~~~iRG~~I~ 91 (316)
T COG0444 19 KAVDGVSFEL---KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG-E-ILFDGKDLLSLSE--KELRKIRGKEIA 91 (316)
T ss_pred EEEeceeEEE---cCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeee-E-EEECCcccccCCH--HHHHhhcCceEE
Confidence 4556799999 8899999999999999999999999886 334333 3 2589988765543 244344334444
Q ss_pred c
Q 012837 106 I 106 (455)
Q Consensus 106 ~ 106 (455)
.
T Consensus 92 m 92 (316)
T COG0444 92 M 92 (316)
T ss_pred E
Confidence 3
No 305
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.00075 Score=69.93 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=39.9
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
+-+++|++ .++.+++|+||+|||||||.+.||... ..|++.| +.|-++.
T Consensus 22 l~~isl~i---~~Ge~~~llGpsGsGKSTLLr~IaGl~-----~p~~G~I~~~g~~i~ 71 (351)
T PRK11432 22 IDNLNLTI---KQGTMVTLLGPSGCGKTTVLRLVAGLE-----KPTEGQIFIDGEDVT 71 (351)
T ss_pred EeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHHCCC-----CCCceEEEECCEECC
Confidence 45699999 788999999999999999999999754 4677776 4565553
No 306
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.00068 Score=70.62 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=40.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.+||++ .++.+++|+||+|||||||.+.||..+ ..|++.| |.|.++.
T Consensus 18 vl~~vsl~i---~~Ge~~~l~G~nGsGKSTLL~~iaGl~-----~p~~G~I~~~g~~i~ 68 (369)
T PRK11000 18 ISKDINLDI---HEGEFVVFVGPSGCGKSTLLRMIAGLE-----DITSGDLFIGEKRMN 68 (369)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEECCEECC
Confidence 455699999 788999999999999999999999754 3677776 4565553
No 307
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.00073 Score=67.37 Aligned_cols=50 Identities=34% Similarity=0.430 Sum_probs=39.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-+++|++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++.
T Consensus 25 vl~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~i~g~~i~ 75 (280)
T PRK13633 25 ALDDVNLEV---KKGEFLVILGRNGSGKSTIAKHMNALL-----IPSEGKVYVDGLDTS 75 (280)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCceEEECCEecc
Confidence 455699999 788999999999999999999999654 3677776 4555543
No 308
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.00075 Score=67.19 Aligned_cols=49 Identities=33% Similarity=0.388 Sum_probs=39.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-+++|++ .++.+++|+||+|||||||.+.|+..+. .+++.| +.|.++
T Consensus 19 ~l~~vsl~i---~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~ 68 (277)
T PRK13652 19 ALNNINFIA---PRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEPI 68 (277)
T ss_pred eeeEeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEC
Confidence 456799999 7889999999999999999999997653 566665 345554
No 309
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.00 E-value=0.0035 Score=58.08 Aligned_cols=26 Identities=46% Similarity=0.675 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
++.+|-|+|.+||||||||..|.++|
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999988
No 310
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.00066 Score=67.01 Aligned_cols=49 Identities=24% Similarity=0.340 Sum_probs=38.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+. .|++.| |.|.++
T Consensus 22 ~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~ 71 (265)
T PRK10253 22 VAENLTVEI---PDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEHI 71 (265)
T ss_pred EeeecceEE---CCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEEh
Confidence 455699999 7889999999999999999999997653 456655 445444
No 311
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.99 E-value=0.00014 Score=71.56 Aligned_cols=64 Identities=27% Similarity=0.383 Sum_probs=50.2
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccCCCCccccccC
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSAKPSSSDRKEV 99 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Takps~~e~~~v 99 (455)
-..+.++||++ .++.+++|+||+|+||||+-..+.. ++..|++.| |+|-+|+.-+|..--+.|+
T Consensus 17 l~Al~~Vsl~v---~~Gei~~LIGPNGAGKTTlfNlitG-----~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 17 LTAVNDVSLEV---RPGEIVGLIGPNGAGKTTLFNLITG-----FYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred EEEEeceeEEE---cCCeEEEEECCCCCCceeeeeeecc-----cccCCCceEEECCcccCCCCHHHHHhccc
Confidence 34455699999 8899999999999999999998876 455888887 8899887766644444443
No 312
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.99 E-value=0.00073 Score=70.67 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=40.4
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
+-.++|++ .++.+++|.||+|||||||.+.||..+ ..|+++| +.|-++..
T Consensus 30 l~~vsl~i---~~Ge~~~LlGpsGsGKSTLLr~IaGl~-----~p~~G~I~~~g~~i~~ 80 (375)
T PRK09452 30 ISNLDLTI---NNGEFLTLLGPSGCGKTTVLRLIAGFE-----TPDSGRIMLDGQDITH 80 (375)
T ss_pred EeeeEEEE---eCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEECCEECCC
Confidence 44689999 788999999999999999999999754 3677776 56666543
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.99 E-value=0.00075 Score=67.84 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=36.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
.+-.+||++ .++.+++|+||+|||||||++.|+..+. .++++|+
T Consensus 52 vL~~vs~~i---~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-----p~~G~I~ 95 (282)
T cd03291 52 VLKNINLKI---EKGEMLAITGSTGSGKTSLLMLILGELE-----PSEGKIK 95 (282)
T ss_pred ceeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE
Confidence 445699999 7889999999999999999999997553 5566553
No 314
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.00081 Score=65.44 Aligned_cols=54 Identities=24% Similarity=0.240 Sum_probs=39.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||++.|+..+...--..|++.| +.|.++
T Consensus 18 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~ 72 (249)
T PRK14253 18 ALKSINLPI---PARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72 (249)
T ss_pred eeecceEEe---cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEc
Confidence 455699999 788999999999999999999999865310000256665 345444
No 315
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.99 E-value=0.00062 Score=71.50 Aligned_cols=37 Identities=38% Similarity=0.618 Sum_probs=31.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC-------CcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN-------GEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~-------~~iIs~DS~ 78 (455)
.++++|+++||||+||||...+||.++. .-||..|+.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY 244 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY 244 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc
Confidence 4589999999999999998888888774 448888873
No 316
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.99 E-value=0.00076 Score=63.59 Aligned_cols=51 Identities=35% Similarity=0.337 Sum_probs=38.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|.||+|||||||.+.||..+. -..++++| |.|.++
T Consensus 24 ~l~~~~~~i---~~Ge~~~l~G~nGsGKStLl~~i~Gl~~---~~~~~G~i~~~g~~~ 75 (194)
T cd03213 24 LLKNVSGKA---KPGELTAIMGPSGAGKSTLLNALAGRRT---GLGVSGEVLINGRPL 75 (194)
T ss_pred ceecceEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCceEEEECCEeC
Confidence 455699999 7889999999999999999999997651 02456665 445444
No 317
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.99 E-value=0.00067 Score=66.04 Aligned_cols=51 Identities=27% Similarity=0.386 Sum_probs=38.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+.+++|++ .++.+++|+||+|||||||++.||... ....+++.| +.|.++
T Consensus 22 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~Gl~---~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 22 ILKGLNLSI---NKGEIHAIMGPNGSGKSTLSKVIAGHP---AYKILEGDILFKGESI 73 (252)
T ss_pred eeecceeEE---cCCcEEEEECCCCCCHHHHHHHHcCCC---cCcCCCceEEECCEEc
Confidence 455699999 788999999999999999999998741 123456665 344443
No 318
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.0016 Score=64.85 Aligned_cols=36 Identities=39% Similarity=0.469 Sum_probs=31.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.|-+++|++ .++.+++|+||+|+|||||.+.+..-+
T Consensus 19 vl~~i~l~v---~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 19 VLEDISLSV---EKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred eeeccEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455799999 788999999999999999999998643
No 319
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.00087 Score=60.66 Aligned_cols=42 Identities=31% Similarity=0.473 Sum_probs=34.6
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
+-.+++++ .++.+++|+||+|+|||||...|+..+ ..++++|
T Consensus 15 l~~~~~~i---~~g~~~~i~G~nGsGKStll~~l~g~~-----~~~~G~i 56 (157)
T cd00267 15 LDNVSLTL---KAGEIVALVGPNGSGKSTLLRAIAGLL-----KPTSGEI 56 (157)
T ss_pred EeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCccEE
Confidence 44588998 778999999999999999999998754 3566666
No 320
>PRK14526 adenylate kinase; Provisional
Probab=96.98 E-value=0.00075 Score=65.16 Aligned_cols=32 Identities=38% Similarity=0.507 Sum_probs=28.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.|+|.||+||||||+|..||+.++...|+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~ 33 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGD 33 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecCh
Confidence 37899999999999999999999977777664
No 321
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.97 E-value=0.0011 Score=67.00 Aligned_cols=51 Identities=31% Similarity=0.358 Sum_probs=40.6
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
..+-++||++ .++.+++|.||+|+|||||.+.|+..+ ..|++.| +.|.++.
T Consensus 16 ~~l~~is~~i---~~Gei~~l~G~NGaGKTTLl~~l~Gl~-----~~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 16 NALDEVSFEA---QKGRIVGFLGPNGAGKSTTMKIITGYL-----PPDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEeEEEE---eCCeEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEEcc
Confidence 3455699999 788999999999999999999998754 4677776 4555553
No 322
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.00084 Score=66.83 Aligned_cols=50 Identities=26% Similarity=0.252 Sum_probs=40.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+..++|++ .++.+++|+||+|||||||...|+..+. .+++.| +.|.++.
T Consensus 22 ~l~~v~l~i---~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~ 72 (277)
T PRK13642 22 QLNGVSFSI---TKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLT 72 (277)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEECC
Confidence 455799999 7899999999999999999999997654 566766 4565553
No 323
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.97 E-value=0.00072 Score=68.80 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=40.4
Q ss_pred hhhhcccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 24 QFARRRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
++.+.+.+-++++.+ +.+.++++.||+|||||||.+.+|. +...|++.|.
T Consensus 11 ~~~~~~a~~di~l~i---~~Ge~vaLlGpSGaGKsTlLRiIAG-----Le~p~~G~I~ 60 (345)
T COG1118 11 RFGAFGALDDISLDI---KSGELVALLGPSGAGKSTLLRIIAG-----LETPDAGRIR 60 (345)
T ss_pred hcccccccccceeee---cCCcEEEEECCCCCcHHHHHHHHhC-----cCCCCCceEE
Confidence 344455555799999 7889999999999999999999997 4457888763
No 324
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.96 E-value=0.00079 Score=71.38 Aligned_cols=38 Identities=37% Similarity=0.593 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.++.|.|.||||+|||++|+.||+.++.+++..|+..+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 45789999999999999999999999999999997644
No 325
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.96 E-value=0.00064 Score=65.93 Aligned_cols=51 Identities=33% Similarity=0.488 Sum_probs=38.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+.... ...+++.| +.|.++
T Consensus 16 ~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~ 67 (248)
T PRK09580 16 ILRGLNLEV---RPGEVHAIMGPNGSGKSTLSATLAGRED---YEVTGGTVEFKGKDL 67 (248)
T ss_pred eeecceeEE---cCCCEEEEECCCCCCHHHHHHHHcCCcc---CCCCceEEEECCCcc
Confidence 455699999 7889999999999999999999997531 13556665 344444
No 326
>PRK07429 phosphoribulokinase; Provisional
Probab=96.96 E-value=0.00083 Score=69.09 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=32.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC---CcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN---GEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~---~~iIs~DS~ 78 (455)
.++.+|+|+|++||||||++..|+..++ +.+|+.|..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 4567899999999999999999999987 567888864
No 327
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.00072 Score=65.81 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=42.8
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCC-cEEEcCccceecccccccCCCCccc
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNG-EIISADSVQVYRGLDIGSAKPSSSD 95 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~-~iIs~DS~qiYr~l~I~Takps~~e 95 (455)
...|.++++.+ .++++-+|.||+||||||+.+.|-+.... +-...+.--.|.|.+|...+.+.-+
T Consensus 20 ~~aL~~i~l~i---~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 20 KHALKDINLDI---PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred hhhhccCceec---cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 44566788998 77899999999999999999999876531 1111121123666666554443333
No 328
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.96 E-value=0.00095 Score=65.57 Aligned_cols=49 Identities=29% Similarity=0.402 Sum_probs=39.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-+++|++ +++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++
T Consensus 36 il~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~~~~G~i~i~g~~i 85 (257)
T cd03288 36 VLKHVKAYI---KPGQKVGICGRTGSGKSSLSLAFFRMV-----DIFDGKIVIDGIDI 85 (257)
T ss_pred ceeEEEEEE---cCCCEEEEECCCCCCHHHHHHHHHccc-----CCCCCeEEECCEEh
Confidence 345699999 788999999999999999999999754 3566766 455554
No 329
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.95 E-value=0.00078 Score=75.21 Aligned_cols=49 Identities=33% Similarity=0.430 Sum_probs=39.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ +++..++|+||+|||||||++.|+..+. .++++| +-|.++
T Consensus 468 vL~~isl~i---~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i 517 (686)
T TIGR03797 468 ILDDVSLQI---EPGEFVAIVGPSGSGKSTLLRLLLGFET-----PESGSVFYDGQDL 517 (686)
T ss_pred ceeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEc
Confidence 355689999 8889999999999999999999998663 566666 455554
No 330
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00084 Score=66.72 Aligned_cols=43 Identities=28% Similarity=0.273 Sum_probs=35.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+. .+++.|
T Consensus 39 il~~is~~i---~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-----p~~G~I 81 (264)
T PRK13546 39 ALDDISLKA---YEGDVIGLVGINGSGKSTLSNIIGGSLS-----PTVGKV 81 (264)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEE
Confidence 344599999 7889999999999999999999997553 455554
No 331
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.95 E-value=0.00079 Score=68.24 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=40.8
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
..+-++||++ .++.+++|.||+|||||||.+.|+..+ ..|++.| +.|.++.
T Consensus 21 ~~l~~vsl~i---~~Gei~gllGpNGaGKSTLl~~l~Gl~-----~p~~G~v~i~G~~~~ 72 (306)
T PRK13537 21 LVVDGLSFHV---QRGECFGLLGPNGAGKTTTLRMLLGLT-----HPDAGSISLCGEPVP 72 (306)
T ss_pred EEEecceEEE---eCCcEEEEECCCCCCHHHHHHHHhcCC-----CCCceEEEECCEecc
Confidence 3455699999 788999999999999999999999754 4677776 4566653
No 332
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00088 Score=66.95 Aligned_cols=49 Identities=35% Similarity=0.442 Sum_probs=39.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|.++
T Consensus 21 ~l~~vs~~i---~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~ 70 (283)
T PRK13636 21 ALKGININI---KKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPI 70 (283)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEEC
Confidence 444699999 7889999999999999999999998653 566666 456555
No 333
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.95 E-value=0.00082 Score=73.14 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=39.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-+++|++ +++..++|+||+|||||||++.|+..+. .+++.| +.|.++.
T Consensus 338 ~l~~i~~~i---~~G~~~aivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~ 388 (547)
T PRK10522 338 SVGPINLTI---KRGELLFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVT 388 (547)
T ss_pred EEecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECC
Confidence 355688888 7889999999999999999999997553 677776 4555543
No 334
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.94 E-value=0.00082 Score=67.03 Aligned_cols=37 Identities=35% Similarity=0.397 Sum_probs=32.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+-.+||++ .++.+++|+||+|||||||.+.||..+.
T Consensus 16 il~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 16 ILRDLSLRI---EPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred EEecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455699999 7889999999999999999999997653
No 335
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.0009 Score=64.82 Aligned_cols=50 Identities=38% Similarity=0.510 Sum_probs=39.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+. .+++.| |.|.++.
T Consensus 14 ~l~~is~~i---~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~~~ 64 (235)
T cd03299 14 KLKNVSLEV---ERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKDIT 64 (235)
T ss_pred eeeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcC
Confidence 345699999 7889999999999999999999988653 566665 4565554
No 336
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.94 E-value=0.00082 Score=59.32 Aligned_cols=27 Identities=41% Similarity=0.683 Sum_probs=24.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcE
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEI 72 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~i 72 (455)
.|+|.||+|+|||+|+..||+.++.++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcce
Confidence 378999999999999999999998665
No 337
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.94 E-value=0.00086 Score=69.36 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=38.3
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
+++|++ .++.+++|+||+|||||||.+.||..+. .|+++| +.|-++.
T Consensus 15 ~isl~i---~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~i~ 62 (354)
T TIGR02142 15 DADFTL---PGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRTLF 62 (354)
T ss_pred EEEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECc
Confidence 789999 7889999999999999999999997653 567776 4555553
No 338
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.00094 Score=64.47 Aligned_cols=49 Identities=29% Similarity=0.394 Sum_probs=38.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-+++|++ .++.+++|+||+|+|||||.+.||..+. .++++| +.|.++
T Consensus 15 il~~i~~~i---~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~ 64 (232)
T cd03300 15 ALDGVSLDI---KEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKDI 64 (232)
T ss_pred eeccceEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEc
Confidence 344699999 7889999999999999999999997653 455555 344444
No 339
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00085 Score=69.38 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=37.6
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
++||++ .++.+++|+||+|||||||.+.||..+ ..|++.| +.|-++
T Consensus 16 ~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~iaGl~-----~p~~G~I~~~g~~~ 62 (352)
T PRK11144 16 TVNLTL---PAQGITAIFGRSGAGKTSLINAISGLT-----RPQKGRIVLNGRVL 62 (352)
T ss_pred EEEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEEc
Confidence 689999 788999999999999999999999754 3667776 455544
No 340
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.93 E-value=0.00076 Score=65.11 Aligned_cols=51 Identities=31% Similarity=0.498 Sum_probs=38.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+. ...+++.| +.|.++
T Consensus 15 ~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~ 66 (243)
T TIGR01978 15 ILKGVNLTV---KKGEIHAIMGPNGSGKSTLSKTIAGHPS---YEVTSGTILFKGQDL 66 (243)
T ss_pred EEeccceEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCcceEEECCEec
Confidence 355699999 7889999999999999999999997531 12456665 344444
No 341
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.00086 Score=66.48 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=38.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||++.|+..+....-..|++.| +.|.++
T Consensus 28 il~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i 82 (269)
T PRK14259 28 AVKNVFCDI---PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDL 82 (269)
T ss_pred EEcceEEEE---cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 455699999 788999999999999999999999754310001355655 445444
No 342
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.93 E-value=0.00079 Score=71.44 Aligned_cols=35 Identities=40% Similarity=0.627 Sum_probs=32.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+..|.+.||||||||+||+.||+.++.+|+..|..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t 84 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecch
Confidence 56799999999999999999999999999999974
No 343
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.92 E-value=0.00092 Score=66.97 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=38.4
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
+-++||++ .++.+++|+||+|||||||.+.|+..+. ++++| +.|.++.
T Consensus 20 l~~isl~I---~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------~~G~I~i~g~~i~ 68 (275)
T cd03289 20 LENISFSI---SPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGDIQIDGVSWN 68 (275)
T ss_pred eeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEhh
Confidence 55699999 8889999999999999999999998652 45665 3455553
No 344
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00083 Score=65.40 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=38.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||++.||..+...--..++++| +.|.++
T Consensus 18 ~l~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 72 (250)
T PRK14247 18 VLDGVNLEI---PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI 72 (250)
T ss_pred eeecceeEE---cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEEC
Confidence 455699999 788999999999999999999999765310000256665 455554
No 345
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.00082 Score=63.20 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=27.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
+.|+|+|++|+||||+|..|+ .+|..+++..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 479999999999999999999 8997776655
No 346
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.91 E-value=0.00083 Score=69.87 Aligned_cols=40 Identities=28% Similarity=0.494 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceec
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYR 82 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr 82 (455)
.++++++|+||+||||||||..||+.++ .+-+.|.+-+|.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~-~ys~t~eG~~Y~ 115 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE-EYSKTPEGRRYT 115 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-hhcccccCceEE
Confidence 3568999999999999999999999996 234455555554
No 347
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.91 E-value=0.00093 Score=68.93 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=40.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+ ..|+++| +.|.++.
T Consensus 56 ~l~~is~~i---~~Gei~gLlGpNGaGKSTLl~~L~Gl~-----~p~~G~i~i~G~~~~ 106 (340)
T PRK13536 56 VVNGLSFTV---ASGECFGLLGPNGAGKSTIARMILGMT-----SPDAGKITVLGVPVP 106 (340)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHcCC-----CCCceEEEECCEECC
Confidence 455699999 788999999999999999999999754 4677777 4666654
No 348
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.0011 Score=65.90 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-+++|++ .++.+++|+||+|||||||++.|+..+....-..|++.| +.|.++
T Consensus 39 il~~vsl~i---~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 93 (271)
T PRK14238 39 ALKNINLDI---HENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI 93 (271)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEc
Confidence 455699999 788999999999999999999999865310000355555 455554
No 349
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00073 Score=72.93 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=40.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.|.++|+++ ..+.-|+|+|+|||||||+...|++.+. .|++.| ..|.++-.
T Consensus 353 ~L~~~~l~l---~~GEkvAIlG~SGsGKSTllqLl~~~~~-----~~~G~i~~~g~~~~~ 404 (573)
T COG4987 353 ALKNFNLTL---AQGEKVAILGRSGSGKSTLLQLLAGAWD-----PQQGSITLNGVEIAS 404 (573)
T ss_pred hhhccceee---cCCCeEEEECCCCCCHHHHHHHHHhccC-----CCCCeeeECCcChhh
Confidence 455688888 7788999999999999999999999875 566665 45555433
No 350
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.00095 Score=66.90 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=39.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+...-...+++.| +.|.++
T Consensus 54 il~~is~~i---~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i 108 (285)
T PRK14254 54 ALDDVSMDI---PENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV 108 (285)
T ss_pred eEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 445699999 788999999999999999999999765310001356665 455554
No 351
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.90 E-value=0.0053 Score=64.45 Aligned_cols=89 Identities=25% Similarity=0.262 Sum_probs=64.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCccceecccc------cccCC-CCccccccCccccccccCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN-----GEIISADSVQVYRGLD------IGSAK-PSSSDRKEVPHHLIDILHP 109 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS~qiYr~l~------I~Tak-ps~~e~~~v~hhlid~~~~ 109 (455)
.+..+++|+||..||||||+.-||.++. ..||.+|-+|=-=+.+ ..... ++..++.-..++|++...|
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP 150 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISP 150 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccCC
Confidence 4567899999999999999999998874 5699999998422222 11122 2367777778889998888
Q ss_pred ccccchhhHHHHHHHHHHHHHhc
Q 012837 110 CEDYSVGKFFEDARHATKDVLKK 132 (455)
Q Consensus 110 ~~~~sv~~f~~~a~~~i~~I~~~ 132 (455)
...+ ..+...+....+...+.
T Consensus 151 ~~~~--~~~i~~v~rL~~~a~~~ 171 (398)
T COG1341 151 QGFP--GRYIAGVARLVDLAKKE 171 (398)
T ss_pred CCCh--HHHHHHHHHHHHHhhcc
Confidence 7643 55676777777666655
No 352
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.001 Score=65.91 Aligned_cols=55 Identities=25% Similarity=0.324 Sum_probs=39.6
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
..+..++|++ .++.+++|+||+|||||||++.||..+...=...++++| +.|.++
T Consensus 39 ~il~~vs~~i---~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i 94 (272)
T PRK14236 39 QALFDISMRI---PKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNI 94 (272)
T ss_pred eEeeeEEEEE---cCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEEC
Confidence 3455699999 788999999999999999999999764310001356665 455554
No 353
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.89 E-value=0.00077 Score=63.62 Aligned_cols=32 Identities=38% Similarity=0.569 Sum_probs=29.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+|+|+|..||||||++..|++ +|+.+|++|.+
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i 33 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEI 33 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHH
Confidence 799999999999999999998 99999999964
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.89 E-value=0.00097 Score=62.70 Aligned_cols=38 Identities=34% Similarity=0.390 Sum_probs=31.7
Q ss_pred eeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 35 SCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 35 ~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
++++ .++.+++|+||+|||||||.+.|+..+ ..|++.|
T Consensus 19 ~~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~i 56 (177)
T cd03222 19 LGVV---KEGEVIGIVGPNGTGKTTAVKILAGQL-----IPNGDND 56 (177)
T ss_pred CcEE---CCCCEEEEECCCCChHHHHHHHHHcCC-----CCCCcEE
Confidence 4677 778999999999999999999999754 3566666
No 355
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.00094 Score=70.48 Aligned_cols=49 Identities=29% Similarity=0.455 Sum_probs=39.6
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
+.++||++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++.
T Consensus 44 L~~isl~i---~~Gei~~LvG~NGsGKSTLLr~I~Gl~-----~p~sG~I~i~G~~i~ 93 (400)
T PRK10070 44 VKDASLAI---EEGEIFVIMGLSGSGKSTMVRLLNRLI-----EPTRGQVLIDGVDIA 93 (400)
T ss_pred EEeEEEEE---cCCCEEEEECCCCchHHHHHHHHHcCC-----CCCCCEEEECCEECC
Confidence 44599999 788999999999999999999999754 3667776 4565554
No 356
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.0011 Score=64.47 Aligned_cols=54 Identities=24% Similarity=0.291 Sum_probs=38.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|.||+|||||||.+.|+..++..-...|++.| +.|.++
T Consensus 18 ~l~~~s~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 72 (250)
T PRK14266 18 ILKNVNLDI---PKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDI 72 (250)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEc
Confidence 455699999 788999999999999999999999754310001355655 345444
No 357
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.89 E-value=0.0016 Score=60.91 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=53.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCcccc-ccCccccccccCcccccchhhHHHHHHH
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDR-KEVPHHLIDILHPCEDYSVGKFFEDARH 124 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~-~~v~hhlid~~~~~~~~sv~~f~~~a~~ 124 (455)
++.|.||+|||||++|..+|...+..+++.++ +++-..|+ +.|..|--. . ...++..++..+..+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at-----------~~~~d~em~~rI~~H~~~--R-~~~w~t~E~~~~l~~ 66 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIAT-----------AEAFDDEMAERIARHRKR--R-PAHWRTIETPRDLVS 66 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEc-----------cCcCCHHHHHHHHHHHHh--C-CCCceEeecHHHHHH
Confidence 47899999999999999999886655655544 33322332 223333221 1 333555555545455
Q ss_pred HHHHHHhcCCccEEechhhHHHHHHHh
Q 012837 125 ATKDVLKKGRVPIVTGGTGLYLRWFIY 151 (455)
Q Consensus 125 ~i~~I~~~gk~pIvvGGTg~Yl~aLl~ 151 (455)
.+.+.. +.-+|++-+-+.|+..+++
T Consensus 67 ~l~~~~--~~~~VLIDclt~~~~n~l~ 91 (169)
T cd00544 67 ALKELD--PGDVVLIDCLTLWVTNLLF 91 (169)
T ss_pred HHHhcC--CCCEEEEEcHhHHHHHhCC
Confidence 444331 2335777777777777775
No 358
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.88 E-value=0.00096 Score=65.98 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=31.1
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.+|+|+|..||||||++..|++++|+.+|++|.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~ 34 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADL 34 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHH
Confidence 479999999999999999999989999999995
No 359
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.88 E-value=0.00093 Score=73.24 Aligned_cols=49 Identities=27% Similarity=0.360 Sum_probs=38.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee-ccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY-RGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY-r~l~I 86 (455)
-+-+++|++ +++..++|+||||||||||++.|+..+. .++++|+ -|.++
T Consensus 355 il~~i~~~i---~~G~~~aivG~sGsGKSTL~~ll~g~~~-----p~~G~I~i~g~~i 404 (574)
T PRK11160 355 VLKGLSLQI---KAGEKVALLGRTGCGKSTLLQLLTRAWD-----PQQGEILLNGQPI 404 (574)
T ss_pred ceecceEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEh
Confidence 355688998 7889999999999999999999998653 6667663 44443
No 360
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.88 E-value=0.00096 Score=70.04 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=35.7
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
+.++||++ .++.+++|+||+|||||||.+.|+..+. .++++|
T Consensus 40 l~~vsf~i---~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I 81 (382)
T TIGR03415 40 VANASLDI---EEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSV 81 (382)
T ss_pred EEeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEE
Confidence 44599999 7889999999999999999999997553 566666
No 361
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.88 E-value=0.00097 Score=74.75 Aligned_cols=48 Identities=31% Similarity=0.394 Sum_probs=38.4
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+-++++++ +++..++|+||+|||||||++.|+..+. .++++| +.|.++
T Consensus 490 L~~isl~i---~~G~~vaIvG~SGsGKSTLlklL~gl~~-----p~~G~I~idg~~i 538 (708)
T TIGR01193 490 LSDISLTI---KMNSKTTIVGMSGSGKSTLAKLLVGFFQ-----ARSGEILLNGFSL 538 (708)
T ss_pred eeceeEEE---CCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEECCEEH
Confidence 44588888 7889999999999999999999998654 566666 445554
No 362
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.88 E-value=0.00097 Score=74.57 Aligned_cols=49 Identities=29% Similarity=0.346 Sum_probs=38.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++++++ +++..++|+||+|||||||++.|+..+. .++++| +.|.++
T Consensus 480 vL~~i~l~i---~~G~~iaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~l 529 (694)
T TIGR03375 480 ALDNVSLTI---RPGEKVAIIGRIGSGKSTLLKLLLGLYQ-----PTEGSVLLDGVDI 529 (694)
T ss_pred ceeeeeEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEh
Confidence 345688998 7889999999999999999999998664 566665 344443
No 363
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.0012 Score=65.27 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=39.7
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
+-.++|++ .++.+++|+||+|||||||.+.|+..+...=-..++++| |.|.++.
T Consensus 24 l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 24 VRDSHVPI---RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred EeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 44699999 788999999999999999999999765310000256666 5565553
No 364
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.87 E-value=0.00099 Score=74.64 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=37.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ +++..++|+||+|||||||++.|+..+. .+++.| +.|.++
T Consensus 494 vL~~isl~i---~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i 543 (710)
T TIGR03796 494 LIENFSLTL---QPGQRVALVGGSGSGKSTIAKLVAGLYQ-----PWSGEILFDGIPR 543 (710)
T ss_pred cccceeEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEeH
Confidence 345688998 7889999999999999999999998764 445554 344444
No 365
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.0011 Score=64.56 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=32.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-++||++ .++.+++|+||+|+|||||.+.||..+
T Consensus 19 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 19 AVKNVNLDV---QRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred eeccceEEE---cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455699999 788999999999999999999999865
No 366
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.87 E-value=0.0011 Score=61.90 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=27.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCC----cEEEcCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNG----EIISADS 77 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~----~iIs~DS 77 (455)
...+.++||||+|||.+|..||+.+.. .++..|.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~ 40 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDM 40 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhh
Confidence 347899999999999999999999985 5655554
No 367
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.0011 Score=65.03 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=38.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.++|++ .++.+++|+||+|||||||++.||..+...--..++++| |.|.++
T Consensus 27 ~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~ 81 (259)
T PRK14274 27 ALKNINLSI---PENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81 (259)
T ss_pred eEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEc
Confidence 455699999 788999999999999999999999765310001145555 455544
No 368
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.001 Score=65.45 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=31.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-++||++ .++.+++|+||+|||||||++.|+..+
T Consensus 28 il~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 28 ALKNINLDI---AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EeeceeEEE---cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455699999 788999999999999999999999754
No 369
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.86 E-value=0.0011 Score=60.99 Aligned_cols=25 Identities=48% Similarity=0.619 Sum_probs=23.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++|+|.||.||||||++..|+++++
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999984
No 370
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.86 E-value=0.0011 Score=71.67 Aligned_cols=49 Identities=27% Similarity=0.378 Sum_probs=38.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-+++|++ +++..++|+||+|||||||.+.|+..+. .++++| +.|.++
T Consensus 337 il~~i~l~i---~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~I~~~g~~i 386 (529)
T TIGR02857 337 ALRPVSFTV---PPGERVALVGPSGAGKSTLLNLLLGFVD-----PTEGSIAVNGVPL 386 (529)
T ss_pred cccceeEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEeh
Confidence 355688998 7889999999999999999999998664 556665 345444
No 371
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0014 Score=63.20 Aligned_cols=52 Identities=33% Similarity=0.459 Sum_probs=41.9
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
..-+-.+|..+ +++++-+|.||+|+|||||.-..++-+ ..|++.| +.|.++.
T Consensus 14 ~~vl~~isl~i---~~g~iTs~IGPNGAGKSTLLS~~sRL~-----~~d~G~i~i~g~~~~ 66 (252)
T COG4604 14 KVVLDDVSLDI---PKGGITSIIGPNGAGKSTLLSMMSRLL-----KKDSGEITIDGLELT 66 (252)
T ss_pred EEeeccceeee---cCCceeEEECCCCccHHHHHHHHHHhc-----cccCceEEEeeeecc
Confidence 33445689998 788999999999999999999988855 4899988 4676654
No 372
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.86 E-value=0.0008 Score=62.69 Aligned_cols=27 Identities=44% Similarity=0.505 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++++|+|.|+.||||||++..||++++
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999986
No 373
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.86 E-value=0.00098 Score=71.76 Aligned_cols=49 Identities=27% Similarity=0.416 Sum_probs=39.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ ..+.+++|+||+|||||||.+.|+..+. .|++.| +.|.++
T Consensus 19 ~l~~is~~i---~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~ 68 (501)
T PRK10762 19 ALSGAALNV---YPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKEV 68 (501)
T ss_pred EeeeeeEEE---cCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEC
Confidence 455699999 7889999999999999999999997553 567776 455554
No 374
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.001 Score=64.78 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=31.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-.++|++ .++.+++|+||+|||||||++.|+..+
T Consensus 18 ~l~~i~~~i---~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 18 AVKNVTMKI---FKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred eEeeeeEee---cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 355699999 788999999999999999999999754
No 375
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.85 E-value=0.0012 Score=72.14 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=37.2
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+-++++++ +++..++|+||+|||||||++.|+..+. .+++.| +.|.++
T Consensus 359 l~~i~l~i---~~G~~~aIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i 407 (582)
T PRK11176 359 LRNINFKI---PAGKTVALVGRSGSGKSTIANLLTRFYD-----IDEGEILLDGHDL 407 (582)
T ss_pred ccCceEEe---CCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCceEEECCEEh
Confidence 44588888 7889999999999999999999998664 555555 344443
No 376
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.84 E-value=0.00095 Score=62.39 Aligned_cols=27 Identities=37% Similarity=0.412 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++++|+|.||.||||||++..|++.++
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999999884
No 377
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.84 E-value=0.0014 Score=61.96 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+|+|+|++||||||||..|+..+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999987
No 378
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.0011 Score=64.75 Aligned_cols=37 Identities=30% Similarity=0.506 Sum_probs=32.4
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
..+-+++|++ .++.+++|+||+|||||||++.|+...
T Consensus 20 ~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 20 HALYDITISI---PKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred eeeeeeEEEE---CCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 3456799999 788999999999999999999999754
No 379
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.001 Score=71.67 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=39.0
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+-++||++ .++.+++|+||+|||||||.+.|+..+ ..|++.| |.|.++
T Consensus 279 l~~isl~i---~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----~p~~G~I~~~g~~~ 327 (510)
T PRK09700 279 VRDISFSV---CRGEILGFAGLVGSGRTELMNCLFGVD-----KRAGGEIRLNGKDI 327 (510)
T ss_pred ccceeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCC-----cCCCCeEEECCEEC
Confidence 44699999 788999999999999999999999754 3577777 455555
No 380
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0011 Score=62.39 Aligned_cols=45 Identities=29% Similarity=0.270 Sum_probs=34.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. ...++++|
T Consensus 22 ~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~G~i 66 (192)
T cd03232 22 LLNNISGYV---KPGTLTALMGESGAGKTTLLDVLAGRKT---AGVITGEI 66 (192)
T ss_pred eEEccEEEE---eCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCcceEE
Confidence 345699999 7889999999999999999999996421 12455555
No 381
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.83 E-value=0.0011 Score=71.04 Aligned_cols=44 Identities=30% Similarity=0.296 Sum_probs=36.6
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
..+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|++.|
T Consensus 17 ~il~~vsl~i---~~Ge~~~liG~nGsGKSTLl~~l~G~~-----~p~~G~i 60 (490)
T PRK10938 17 KTLQLPSLTL---NAGDSWAFVGANGSGKSALARALAGEL-----PLLSGER 60 (490)
T ss_pred eecccceEEE---cCCCEEEEECCCCCCHHHHHHHHhccC-----CCCCceE
Confidence 3455699999 788999999999999999999999754 3566666
No 382
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.83 E-value=0.0011 Score=64.82 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=38.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ .++.+++|+||+|||||||.+.|+..+...-=..+++.| +.|.++
T Consensus 22 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 76 (254)
T PRK14273 22 ALNNINIKI---LKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNI 76 (254)
T ss_pred eecceeeEE---cCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEec
Confidence 455699999 788999999999999999999999765310000145665 445444
No 383
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.83 E-value=0.0012 Score=68.91 Aligned_cols=41 Identities=34% Similarity=0.666 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC--CcEEEcCccceecc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN--GEIISADSVQVYRG 83 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~--~~iIs~DS~qiYr~ 83 (455)
.++.|.|+||+|+|||+||..+|+.|| .+|++..+-.||..
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~ 91 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSS 91 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BT
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeec
Confidence 478999999999999999999999997 77888877777653
No 384
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.83 E-value=0.0013 Score=65.64 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=32.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+
T Consensus 22 ~l~~v~l~i---~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 22 ALNDISFSI---PRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred ceeeEEEEE---cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 455699999 788999999999999999999999765
No 385
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.83 E-value=0.001 Score=73.97 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=36.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
-|-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|++.|+
T Consensus 16 ~l~~vs~~i---~~Ge~v~LvG~NGsGKSTLLkiL~G~~-----~pd~G~I~ 59 (638)
T PRK10636 16 LLDNATATI---NPGQKVGLVGKNGCGKSTLLALLKNEI-----SADGGSYT 59 (638)
T ss_pred eecCcEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCceEE
Confidence 345699999 788999999999999999999999754 35677664
No 386
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.82 E-value=0.0012 Score=74.20 Aligned_cols=42 Identities=29% Similarity=0.437 Sum_probs=35.8
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
+-++||++ +++..++|+||+|||||||++.|+..+. .++++|
T Consensus 497 L~~isl~i---~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I 538 (711)
T TIGR00958 497 LKGLTFTL---HPGEVVALVGPSGSGKSTVAALLQNLYQ-----PTGGQV 538 (711)
T ss_pred ccCceEEE---cCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEE
Confidence 55689998 8899999999999999999999998664 566665
No 387
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.82 E-value=0.0012 Score=65.00 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=31.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-+++|++ .++.+++|+||+|||||||.+.|+..+
T Consensus 31 vl~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 31 ALKNINMMV---HEKQVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred eeeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 345699999 788999999999999999999999754
No 388
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.82 E-value=0.0013 Score=63.14 Aligned_cols=34 Identities=41% Similarity=0.515 Sum_probs=31.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
..+|+|+|-.||||||+|..+++ +|..+|++|..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v 35 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDV 35 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHH
Confidence 36899999999999999999999 99999999953
No 389
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.82 E-value=0.019 Score=56.05 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
...++|.||+|+|||+|+..++.++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998654
No 390
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0016 Score=62.29 Aligned_cols=51 Identities=39% Similarity=0.594 Sum_probs=40.9
Q ss_pred ccccc-ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee-ccccc
Q 012837 28 RRRLF-ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY-RGLDI 86 (455)
Q Consensus 28 ~~~~~-~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY-r~l~I 86 (455)
.|.++ ..+|++ ..+..+.|.||+|+|||||.+.||.-+ -.|++.|| ++-++
T Consensus 14 e~~lf~~L~f~l---~~Ge~~~i~G~NG~GKTtLLRilaGLl-----~p~~G~v~~~~~~i 66 (209)
T COG4133 14 ERTLFSDLSFTL---NAGEALQITGPNGAGKTTLLRILAGLL-----RPDAGEVYWQGEPI 66 (209)
T ss_pred cceeecceeEEE---cCCCEEEEECCCCCcHHHHHHHHHccc-----CCCCCeEEecCCCC
Confidence 34444 599999 778899999999999999999999855 48888884 55554
No 391
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.80 E-value=0.0011 Score=63.33 Aligned_cols=32 Identities=41% Similarity=0.419 Sum_probs=28.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+|+|+|+.||||||++..|++ +|..+|++|.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i 32 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRL 32 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchH
Confidence 489999999999999999875 79999999954
No 392
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.80 E-value=0.0013 Score=65.00 Aligned_cols=42 Identities=33% Similarity=0.301 Sum_probs=37.0
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceec
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYR 82 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr 82 (455)
++||++ .++..|.|+|++|||||||.+.||. ++..|+++|..
T Consensus 45 disf~i---~~Ge~vGiiG~NGaGKSTLlkliaG-----i~~Pt~G~v~v 86 (249)
T COG1134 45 DISFEI---YKGERVGIIGHNGAGKSTLLKLIAG-----IYKPTSGKVKV 86 (249)
T ss_pred CceEEE---eCCCEEEEECCCCCcHHHHHHHHhC-----ccCCCCceEEE
Confidence 499999 8899999999999999999999997 55688887743
No 393
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.0016 Score=61.58 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=36.7
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
+.++||++ +.+.-+++.||+|+|||||.+.|-..+. .|++||
T Consensus 27 ~~~vslsV---~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I 68 (235)
T COG4778 27 LRNVSLSV---NAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQI 68 (235)
T ss_pred eeceeEEe---cCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceE
Confidence 44689999 7889999999999999999999988764 788887
No 394
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0012 Score=64.73 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=38.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-+++|++ .++.+++|+||+|||||||.+.||..+...--..|++.| +.|.++
T Consensus 19 ~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~ 73 (258)
T PRK14241 19 AVEDVNLNI---EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL 73 (258)
T ss_pred eeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence 455699999 788999999999999999999999865210000256665 345444
No 395
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0011 Score=71.40 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=39.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.+||++ ..+.+++|+||+|||||||.+.||..+ ..|++.| |.|.++.
T Consensus 20 il~~vs~~i---~~Ge~~~liG~nGsGKSTLl~~i~Gl~-----~p~~G~i~~~g~~i~ 70 (510)
T PRK09700 20 ALKSVNLTV---YPGEIHALLGENGAGKSTLMKVLSGIH-----EPTKGTITINNINYN 70 (510)
T ss_pred EeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHcCCc-----CCCccEEEECCEECC
Confidence 455699999 788999999999999999999999754 3567766 4565553
No 396
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.78 E-value=0.0012 Score=63.51 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.++.+++|+||+|||||||.+.|+..+ ..|+++|
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----~~~~G~i 37 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLI-----PPAKGTV 37 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCCceE
Confidence 578899999999999999999999754 3566665
No 397
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0013 Score=64.07 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=32.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-.++|++ .++.+++|+||+|||||||++.||...
T Consensus 20 ~l~~is~~i---~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 20 ILFDINLDI---YKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455699999 788999999999999999999999764
No 398
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0013 Score=64.09 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=31.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-+++|++ .++.+++|+||+|||||||.+.|+..+
T Consensus 18 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 18 ALKKINLDI---EENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred eeecceEEE---cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455699999 788999999999999999999999754
No 399
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.77 E-value=0.0019 Score=61.94 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=41.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccCC
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSAK 90 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Tak 90 (455)
.|-++||++ .++..+.|+||+|+|||||.+.|..... .++++| +.+.++..-+
T Consensus 17 aL~~vs~~i---~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 17 ALRDVSFHI---PKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSRLK 70 (223)
T ss_pred hhhCceEee---cCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeeccccc
Confidence 455799999 8889999999999999999999987654 455555 4566665543
No 400
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.77 E-value=0.0012 Score=72.24 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=31.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
-|-+++|++ +++..++|+||+|||||||+..|+..+
T Consensus 365 vL~~i~l~i---~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 365 LAGPLNFTL---PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355688998 889999999999999999999998754
No 401
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0013 Score=64.14 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=31.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-.+||++ .++.+++|+||+|||||||++.|+..+
T Consensus 20 ~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 20 ALKGIDLDF---NQNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred EEecceEEE---cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455699999 788999999999999999999999753
No 402
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0014 Score=68.70 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=39.0
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
+-+++|++ .++.+++|.||+|||||||.+.||... ..|+++| +.|-++.
T Consensus 35 l~~vsl~i---~~Ge~~~llGpsGsGKSTLLr~IaGl~-----~p~~G~I~i~g~~i~ 84 (377)
T PRK11607 35 VDDVSLTI---YKGEIFALLGASGCGKSTLLRMLAGFE-----QPTAGQIMLDGVDLS 84 (377)
T ss_pred EeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEECCEECC
Confidence 44689999 788999999999999999999999754 4677776 4555543
No 403
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.0014 Score=63.99 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=38.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-+++|++ .++.+++|+||+|||||||++.||..+...--..+++.| +.|.++.
T Consensus 19 ~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 19 ALNDINLPI---YENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred eeeceeEEE---cCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 455699999 788999999999999999999999754210000145555 4455553
No 404
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.76 E-value=0.0012 Score=71.43 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=40.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||++.|+..+.-.....|++.| +.|.++
T Consensus 24 ~l~~isl~i---~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 78 (529)
T PRK15134 24 VVNDVSLQI---EAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL 78 (529)
T ss_pred eeeceEEEE---eCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec
Confidence 455699999 788999999999999999999999876421111256665 455554
No 405
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.0014 Score=63.80 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=31.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-.++|++ .++.+++|+||+|||||||++.|+..+
T Consensus 19 ~l~~~sl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 19 ALHGISLDF---EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eeeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 445699999 788999999999999999999999754
No 406
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0062 Score=56.95 Aligned_cols=28 Identities=39% Similarity=0.653 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+...-|+|+||+||||||++..+|..+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3456799999999999999999998873
No 407
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.75 E-value=0.0016 Score=70.96 Aligned_cols=48 Identities=29% Similarity=0.482 Sum_probs=37.6
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+-+++|++ +++..++|+||+|||||||++.|+..+. .++++| +.|.++
T Consensus 356 L~~inl~i---~~Ge~i~IvG~sGsGKSTLlklL~gl~~-----p~~G~I~i~g~~i 404 (576)
T TIGR02204 356 LDGLNLTV---RPGETVALVGPSGAGKSTLFQLLLRFYD-----PQSGRILLDGVDL 404 (576)
T ss_pred ccceeEEe---cCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEEH
Confidence 44688998 8899999999999999999999998764 455555 344443
No 408
>PRK06761 hypothetical protein; Provisional
Probab=96.75 E-value=0.0014 Score=66.25 Aligned_cols=33 Identities=36% Similarity=0.435 Sum_probs=28.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
+++|+|.||+||||||++..|+++++...++++
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 579999999999999999999999975555544
No 409
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.0014 Score=71.08 Aligned_cols=43 Identities=21% Similarity=0.187 Sum_probs=35.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+. .|+++|
T Consensus 16 il~~vsl~i---~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i 58 (530)
T PRK15064 16 LFENISVKF---GGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNV 58 (530)
T ss_pred eEeCCEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceE
Confidence 445699999 7889999999999999999999997553 455555
No 410
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=96.75 E-value=0.0021 Score=69.07 Aligned_cols=90 Identities=17% Similarity=0.329 Sum_probs=73.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhh----
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGK---- 117 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~---- 117 (455)
.+.++++|+||.|+|-..|-..|-...+-.| --.++++|..|...|.+|+.+||++.-.+..+...+.
T Consensus 338 ~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f--------~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~ 409 (542)
T KOG0609|consen 338 FRRRTLVLIGAQGVGRRELKNKLIELNPDRF--------GTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEY 409 (542)
T ss_pred cccceEEEECCcccchHHHHHHHHhhCcccc--------ccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceec
Confidence 5678999999999999999999987765322 2366899999999999999999999876655444443
Q ss_pred ------HHHHHHHHHHHHHhcCCccEEe
Q 012837 118 ------FFEDARHATKDVLKKGRVPIVT 139 (455)
Q Consensus 118 ------f~~~a~~~i~~I~~~gk~pIvv 139 (455)
++..+.+.+..++.+||+.|+.
T Consensus 410 GEy~~nlYGTs~dsVr~v~~~gKicvLd 437 (542)
T KOG0609|consen 410 GEYEGNLYGTSLDSVRNVIASGKICVLD 437 (542)
T ss_pred CcchhccccchHHHHHHHHHhCCEEEEe
Confidence 3667789999999999999874
No 411
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.75 E-value=0.0014 Score=70.68 Aligned_cols=49 Identities=27% Similarity=0.363 Sum_probs=39.4
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|+++| |.|.++.
T Consensus 268 l~~vsl~i---~~Ge~~~liG~NGsGKSTLl~~l~G~~-----~p~~G~I~~~g~~i~ 317 (501)
T PRK10762 268 VNDVSFTL---RKGEILGVSGLMGAGRTELMKVLYGAL-----PRTSGYVTLDGHEVV 317 (501)
T ss_pred cccceEEE---cCCcEEEEecCCCCCHHHHHHHHhCCC-----CCCceEEEECCEECC
Confidence 45689999 788999999999999999999999754 3577776 4565554
No 412
>PRK14529 adenylate kinase; Provisional
Probab=96.75 E-value=0.0012 Score=64.48 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=26.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISA 75 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~ 75 (455)
.|+|.||+||||||+|..||++++...||.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~ 31 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIES 31 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCccc
Confidence 489999999999999999999999665543
No 413
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.73 E-value=0.0015 Score=71.47 Aligned_cols=43 Identities=26% Similarity=0.443 Sum_probs=35.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
-+-+++|++ +++..++|+||+|||||||++.|+..+. .+++.|
T Consensus 330 ~l~~i~~~i---~~G~~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~i 372 (569)
T PRK10789 330 ALENVNFTL---KPGQMLGICGPTGSGKSTLLSLIQRHFD-----VSEGDI 372 (569)
T ss_pred cccCeeEEE---CCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEE
Confidence 345688898 7889999999999999999999997653 566665
No 414
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.73 E-value=0.0014 Score=71.51 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=38.3
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+-++||++ +++..++|+||+|||||||...|+..+. .+++.| +.|.++
T Consensus 358 l~~vs~~i---~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~i 406 (555)
T TIGR01194 358 LGPIDLRI---AQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAAV 406 (555)
T ss_pred eccceEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEC
Confidence 45688998 7889999999999999999999997553 666766 344444
No 415
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.73 E-value=0.0014 Score=64.38 Aligned_cols=37 Identities=27% Similarity=0.517 Sum_probs=32.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+.
T Consensus 19 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 19 ALHAVDLNI---HHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred EEecceEEE---cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 455699999 7889999999999999999999997653
No 416
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.73 E-value=0.0013 Score=63.57 Aligned_cols=28 Identities=43% Similarity=0.641 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++.+|+|+||+|||||||+..|+..+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999999875
No 417
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.73 E-value=0.0013 Score=73.05 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=36.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
-|-++||++ .++.+++|+||+|||||||.+.||..+ ..|++.|+
T Consensus 18 il~~is~~i---~~Ge~v~LvG~NGsGKSTLLriiaG~~-----~p~~G~I~ 61 (635)
T PRK11147 18 LLDNAELHI---EDNERVCLVGRNGAGKSTLMKILNGEV-----LLDDGRII 61 (635)
T ss_pred eEeCcEEEE---CCCCEEEEECCCCCCHHHHHHHHcCCC-----CCCCeEEE
Confidence 445699999 788999999999999999999999754 35666654
No 418
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.73 E-value=0.0015 Score=68.93 Aligned_cols=51 Identities=27% Similarity=0.398 Sum_probs=39.9
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
..+-++||++ .++.+++|.||+|||||||.+.|+..+ ..+++.| +.|.++.
T Consensus 17 ~vL~~vs~~i---~~Geiv~liGpNGaGKSTLLk~LaGll-----~p~sG~I~l~G~~i~ 68 (402)
T PRK09536 17 TVLDGVDLSV---REGSLVGLVGPNGAGKTTLLRAINGTL-----TPTAGTVLVAGDDVE 68 (402)
T ss_pred EEEEeeEEEE---CCCCEEEEECCCCchHHHHHHHHhcCC-----CCCCcEEEECCEEcC
Confidence 3455699999 889999999999999999999999755 3566665 3454443
No 419
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0014 Score=70.69 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=39.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ ..+.+++|+||+|||||||.+.||..+.. ..|++.| |.|.++
T Consensus 20 il~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~~~G~i~~~g~~~ 71 (506)
T PRK13549 20 ALDNVSLKV---RAGEIVSLCGENGAGKSTLMKVLSGVYPH---GTYEGEIIFEGEEL 71 (506)
T ss_pred eecceeEEE---eCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCCCeEEEECCEEC
Confidence 455699999 78899999999999999999999976531 1267776 456555
No 420
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.72 E-value=0.0015 Score=71.47 Aligned_cols=44 Identities=27% Similarity=0.080 Sum_probs=36.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
-+-++||++ ..+.+++|+||+|||||||.+.|+..+. .|++.|+
T Consensus 22 il~~vs~~i---~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~ 65 (556)
T PRK11819 22 ILKDISLSF---FPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEAR 65 (556)
T ss_pred eeeCceEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEE
Confidence 445699999 7889999999999999999999997653 4555553
No 421
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.72 E-value=0.003 Score=68.76 Aligned_cols=49 Identities=29% Similarity=0.415 Sum_probs=38.7
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLD 85 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~ 85 (455)
+.+-++||.+ +++.+++|+|++||||||||+.|+.-.. .+++.| |.|-+
T Consensus 305 ~Av~~VSf~l---~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i~~~g~~ 354 (539)
T COG1123 305 KAVDDVSFDL---REGETLGLVGESGSGKSTLARILAGLLP-----PSSGSIIFDGQD 354 (539)
T ss_pred eeeeeeeeEe---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEEeCcc
Confidence 3444699999 8899999999999999999999998553 455554 44544
No 422
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.72 E-value=0.0016 Score=71.81 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC-CcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN-GEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~-~~iIs~DS~ 78 (455)
...+|+|+||+||||||||..|+..++ ..+|+.|..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 346899999999999999999999884 468999975
No 423
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0015 Score=64.06 Aligned_cols=54 Identities=28% Similarity=0.275 Sum_probs=38.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+....-..++++| +.|.++
T Consensus 27 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i 81 (258)
T PRK14268 27 ALKNVSMQI---PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI 81 (258)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEc
Confidence 355699999 788999999999999999999999754310000256665 445444
No 424
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.72 E-value=0.0015 Score=70.62 Aligned_cols=49 Identities=27% Similarity=0.266 Sum_probs=39.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|++.| +.|.++
T Consensus 26 il~~vsl~i---~~Ge~~~liG~NGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~ 75 (510)
T PRK15439 26 VLKGIDFTL---HAGEVHALLGGNGAGKSTLMKIIAGIV-----PPDSGTLEIGGNPC 75 (510)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEEC
Confidence 455699999 788999999999999999999999754 3566666 455554
No 425
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.71 E-value=0.0013 Score=65.84 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=27.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcC---CcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLN---GEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~---~~iIs~DS 77 (455)
+|+|+||+|||||||+..|+..++ +.+|+.|.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd 35 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDD 35 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcc
Confidence 589999999999999999998874 45777774
No 426
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.71 E-value=0.0017 Score=61.46 Aligned_cols=43 Identities=35% Similarity=0.408 Sum_probs=34.3
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
|..+++.+ ..+..++|+||+|||||||...||.-- ..||++|+
T Consensus 26 L~~V~L~v---~~Ge~vaiVG~SGSGKSTLl~vlAGLd-----~~ssGeV~ 68 (228)
T COG4181 26 LKGVELVV---KRGETVAIVGPSGSGKSTLLAVLAGLD-----DPSSGEVR 68 (228)
T ss_pred eecceEEe---cCCceEEEEcCCCCcHHhHHHHHhcCC-----CCCCceEE
Confidence 34588888 788999999999999999999999632 35666653
No 427
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.71 E-value=0.0017 Score=70.19 Aligned_cols=46 Identities=28% Similarity=0.273 Sum_probs=36.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
.+-.+||++ .++.+++|+||+|||||||.+.||..+. ...|+++|+
T Consensus 15 ~l~~is~~i---~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---~~p~~G~i~ 60 (520)
T TIGR03269 15 VLKNISFTI---EEGEVLGILGRSGAGKSVLMHVLRGMDQ---YEPTSGRII 60 (520)
T ss_pred eeeceeEEE---cCCCEEEEECCCCCCHHHHHHHHhhccc---CCCCceEEE
Confidence 344699999 7889999999999999999999998641 124566653
No 428
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.70 E-value=0.0019 Score=60.03 Aligned_cols=42 Identities=26% Similarity=0.480 Sum_probs=35.3
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISA 75 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~ 75 (455)
|+.+++++ .++.++.|+||+|||||||.--.+.++...|-..
T Consensus 18 La~~n~Ti---a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~ 59 (213)
T COG4136 18 LANVNFTI---AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCT 59 (213)
T ss_pred EEeeeEEe---cCCcEEEEECCCCccHHHHHHHHHhhcccCccee
Confidence 45699999 8899999999999999999888888887665333
No 429
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.70 E-value=0.0016 Score=63.51 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=32.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+-.++|++ .++.+++|+||+|||||||.+.||..+.
T Consensus 19 il~~~s~~i---~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 19 VLKNINMDF---PERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred EecceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 455699999 7889999999999999999999998664
No 430
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.69 E-value=0.0018 Score=63.79 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=31.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
-+-.+||++ .++.+++|+||+|||||||...||..+
T Consensus 25 ~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 25 ILKDITIKI---PNNSIFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred eEeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455699999 788999999999999999999999754
No 431
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.69 E-value=0.0019 Score=63.53 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=32.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+-.++|++ .++.+++|+||+|||||||.+.|+..+.
T Consensus 22 il~~isl~i---~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 22 AIEGISMDI---YRNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred eecceEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 455699999 7889999999999999999999998654
No 432
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.68 E-value=0.0013 Score=65.96 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=29.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLN-----GEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS~ 78 (455)
+|+|+|++||||||++..|++.++ ..+|+.|+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~y 38 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSF 38 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccc
Confidence 589999999999999999998774 468999986
No 433
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0015 Score=60.27 Aligned_cols=35 Identities=34% Similarity=0.512 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
+..+.|.|+|.+|+||||+|..||+.++.+.|.+.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 34678999999999999999999999997776654
No 434
>PRK04195 replication factor C large subunit; Provisional
Probab=96.68 E-value=0.012 Score=63.48 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=31.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++.+.|.||+|+|||++|..||++++..++..+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 67899999999999999999999999888777654
No 435
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.67 E-value=0.0015 Score=70.31 Aligned_cols=48 Identities=29% Similarity=0.286 Sum_probs=38.1
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+-++||++ .++.+++|+||+|||||||.+.|+..+. .+++.| |.|-++
T Consensus 269 l~~isl~i---~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~~ 317 (501)
T PRK11288 269 REPISFSV---RAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKPI 317 (501)
T ss_pred ccceeEEE---eCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEEC
Confidence 34589999 8889999999999999999999997653 566666 345444
No 436
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.0017 Score=71.95 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=40.5
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
+-++||++ .++.+++|+||+|||||||++.|+..+ ..+++.| |.|.++..
T Consensus 340 l~~vs~~i---~~Ge~~~lvG~nGsGKSTLlk~i~Gl~-----~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 340 VEKVSFDL---WPGETLSLVGESGSGKSTTGRALLRLV-----ESQGGEIIFNGQRIDT 390 (623)
T ss_pred EeeeEeEE---cCCCEEEEECCCCCCHHHHHHHHHcCC-----CCCCcEEEECCEECCc
Confidence 44699999 788999999999999999999999754 3677777 56666543
No 437
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.0017 Score=63.85 Aligned_cols=51 Identities=33% Similarity=0.437 Sum_probs=38.6
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
..+..+|+++ .++..++|.||||||||||++.|+.-+ ...++.| ..|.++.
T Consensus 18 ~~l~~v~~~i---~~Ge~~~i~G~nGsGKSTL~~~l~GLl-----~p~~G~v~~~g~~~~ 69 (235)
T COG1122 18 AALKDVSLEI---EKGERVLLIGPNGSGKSTLLKLLNGLL-----KPTSGEVLVDGLDTS 69 (235)
T ss_pred eeeeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHcCcC-----cCCCCEEEECCeecc
Confidence 3455699999 888999999999999999999998644 3555555 3455443
No 438
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.66 E-value=0.0018 Score=70.04 Aligned_cols=43 Identities=33% Similarity=0.373 Sum_probs=36.0
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..+++.|+
T Consensus 300 l~~is~~i---~~Ge~~~l~G~NGsGKSTLl~~l~Gl~-----~p~~G~i~ 342 (520)
T TIGR03269 300 VDNVSLEV---KEGEIFGIVGTSGAGKTTLSKIIAGVL-----EPTSGEVN 342 (520)
T ss_pred EeeEEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCeEEE
Confidence 44699999 788999999999999999999999754 35666664
No 439
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.66 E-value=0.0017 Score=73.18 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=38.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+.++|+++ +.+..|+|+|++|||||||++.|..-+. ..+++| +-|.|+
T Consensus 488 vL~~isL~I---~~Ge~vaIvG~SGsGKSTL~KLL~gly~-----p~~G~I~~dg~dl 537 (709)
T COG2274 488 VLEDLSLEI---PPGEKVAIVGRSGSGKSTLLKLLLGLYK-----PQQGRILLDGVDL 537 (709)
T ss_pred hhhceeEEe---CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEeH
Confidence 344688998 7789999999999999999999998653 555555 455554
No 440
>PLN02796 D-glycerate 3-kinase
Probab=96.66 E-value=0.002 Score=66.73 Aligned_cols=27 Identities=41% Similarity=0.560 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++.+|+|+||+|||||||+..|+..+.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 567899999999999999999998875
No 441
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.66 E-value=0.0018 Score=71.00 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=37.5
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+-+++|++ +++..++|+||+|||||||++.|+..+. .++++| +.|.++
T Consensus 357 l~~i~l~i---~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~i 405 (592)
T PRK10790 357 LQNINLSV---PSRGFVALVGHTGSGKSTLASLLMGYYP-----LTEGEIRLDGRPL 405 (592)
T ss_pred eeceeEEE---cCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEh
Confidence 44688998 8889999999999999999999998664 455554 344443
No 442
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.65 E-value=0.0016 Score=69.81 Aligned_cols=49 Identities=29% Similarity=0.375 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ .++.+++|+||+|||||||.+.|+..+. .|++.| +.|-++
T Consensus 13 il~~vs~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~ 62 (491)
T PRK10982 13 ALDNVNLKV---RPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKEI 62 (491)
T ss_pred eeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEEC
Confidence 345699999 7889999999999999999999997543 566766 455554
No 443
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.65 E-value=0.0015 Score=56.48 Aligned_cols=28 Identities=46% Similarity=0.889 Sum_probs=20.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+.+..++|.||+|+|||+++..+++.+.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 3567899999999999999999999873
No 444
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.64 E-value=0.0018 Score=60.29 Aligned_cols=27 Identities=41% Similarity=0.636 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+|+|+|++||||||+|..|+..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999987
No 445
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.0022 Score=71.36 Aligned_cols=42 Identities=29% Similarity=0.477 Sum_probs=34.9
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
+-++||++ +.+++++|+||+|+||||+|..|-+-+. ..|++|
T Consensus 484 lk~lsfti---~pGe~vALVGPSGsGKSTiasLL~rfY~-----PtsG~I 525 (716)
T KOG0058|consen 484 LKNLSFTI---RPGEVVALVGPSGSGKSTIASLLLRFYD-----PTSGRI 525 (716)
T ss_pred hcCceeee---CCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCCeE
Confidence 33588888 7889999999999999999999977553 667665
No 446
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.64 E-value=0.0016 Score=59.27 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=21.1
Q ss_pred EEEEcCCcccHHHHHHHHHHHcCCcEE
Q 012837 47 IVISGPTGAGKSQLALELAKRLNGEII 73 (455)
Q Consensus 47 I~I~GPTGsGKStLA~~LA~~l~~~iI 73 (455)
|+|+|+.|+|||||+..||++ |..+|
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 899999999999999999998 76665
No 447
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.63 E-value=0.0021 Score=69.82 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=35.0
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
+-+++|++ +++..++|+||+|||||||++.|+..+. .++++|
T Consensus 348 l~~inl~i---~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----~~~G~I 389 (571)
T TIGR02203 348 LDSISLVI---EPGETVALVGRSGSGKSTLVNLIPRFYE-----PDSGQI 389 (571)
T ss_pred ccCeeEEe---cCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeE
Confidence 44588888 7889999999999999999999998664 555555
No 448
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.62 E-value=0.0019 Score=64.20 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=31.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-.++|++ .++.+++|+||+|||||||++.|+..+
T Consensus 35 ~l~~vs~~i---~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 35 ALVDVHLKI---PAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EEeeeeeEE---cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345699999 788999999999999999999999754
No 449
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.62 E-value=0.0018 Score=68.62 Aligned_cols=35 Identities=40% Similarity=0.576 Sum_probs=31.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
...|.|.||||||||++|+.||+.++.+++.+|..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~ 142 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADAT 142 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 35689999999999999999999999999888854
No 450
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.62 E-value=0.0022 Score=61.30 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=30.1
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+||++ .++..++|.|-+||||||||+.||...
T Consensus 31 ~vSFtL---~~~QTlaiIG~NGSGKSTLakMlaGmi 63 (267)
T COG4167 31 PVSFTL---REGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred ceEEEe---cCCcEEEEEccCCCcHhHHHHHHhccc
Confidence 499999 888999999999999999999999744
No 451
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.61 E-value=0.0019 Score=69.58 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=38.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+. .|++.| |.|.++
T Consensus 19 il~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i 68 (501)
T PRK11288 19 ALDDISFDC---RAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQEM 68 (501)
T ss_pred EEeeeeEEE---eCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEC
Confidence 355699999 7889999999999999999999997543 466666 445444
No 452
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.61 E-value=0.0019 Score=61.06 Aligned_cols=52 Identities=29% Similarity=0.459 Sum_probs=39.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||.+.||.... ...++++| +.|-++.
T Consensus 15 ~l~~is~~i---~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 15 ILKGVNLTI---KKGEVHALMGPNGSGKSTLAKTIMGHPK---YEVTEGEILFKGEDIT 67 (200)
T ss_pred eeeccceEE---CCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCccEEEECCEECC
Confidence 455699999 7889999999999999999999987521 23466665 3454443
No 453
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=96.61 E-value=0.0019 Score=63.24 Aligned_cols=48 Identities=33% Similarity=0.513 Sum_probs=37.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. +++.| |.|-++
T Consensus 11 ~l~~vsl~i---~~Gei~~l~G~nGsGKSTLl~~l~Gl~~------~~G~i~~~g~~i 59 (248)
T PRK03695 11 RLGPLSAEV---RAGEILHLVGPNGAGKSTLLARMAGLLP------GSGSIQFAGQPL 59 (248)
T ss_pred eecceEEEE---cCCCEEEEECCCCCCHHHHHHHHcCCCC------CCeEEEECCEec
Confidence 456799999 7889999999999999999999987542 35555 455544
No 454
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.61 E-value=0.0022 Score=64.01 Aligned_cols=51 Identities=22% Similarity=0.474 Sum_probs=39.4
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee-ccccc
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY-RGLDI 86 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY-r~l~I 86 (455)
+..+-.+|+++ ..+..++++||+||||||+.+.+-+ .|-.+|+.|+ .|-+|
T Consensus 14 ~~av~~v~l~I---~~gef~vliGpSGsGKTTtLkMINr-----Liept~G~I~i~g~~i 65 (309)
T COG1125 14 KKAVDDVNLTI---EEGEFLVLIGPSGSGKTTTLKMINR-----LIEPTSGEILIDGEDI 65 (309)
T ss_pred ceeeeeeeEEe---cCCeEEEEECCCCCcHHHHHHHHhc-----ccCCCCceEEECCeec
Confidence 34444699999 8889999999999999999998876 4557777763 34443
No 455
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=96.60 E-value=0.002 Score=63.61 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=31.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+-.++|++ .++.+++|+||+|||||||++.|+..+
T Consensus 25 il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 25 AVKNVWLDI---PKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred EeecceEEE---cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 455699999 788999999999999999999999754
No 456
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.60 E-value=0.0021 Score=70.49 Aligned_cols=48 Identities=35% Similarity=0.489 Sum_probs=37.2
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+-++++++ +++..++|+||+|||||||++.|+..+. .++++| +.|.++
T Consensus 351 L~~inl~i---~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----p~~G~I~i~g~~i 399 (588)
T PRK13657 351 VEDVSFEA---KPGQTVAIVGPTGAGKSTLINLLQRVFD-----PQSGRILIDGTDI 399 (588)
T ss_pred ecceeEEE---CCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEh
Confidence 45588888 7889999999999999999999998664 455555 344443
No 457
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.60 E-value=0.002 Score=70.24 Aligned_cols=36 Identities=33% Similarity=0.160 Sum_probs=31.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
-+-++||++ .++.+++|+||+|||||||.+.|+..+
T Consensus 20 il~~is~~i---~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 20 ILKDISLSF---FPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred eecCceEEE---CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345699999 888999999999999999999999754
No 458
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.59 E-value=0.0018 Score=63.59 Aligned_cols=46 Identities=33% Similarity=0.355 Sum_probs=34.1
Q ss_pred ccceeeeec--cCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 31 LFATSCSVA--SSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 31 ~~~~~~~~~--~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
+-++++++. .-.++.+++|+||+|||||||.+.||..+ ..+++.|+
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-----~p~~G~i~ 57 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL-----KPDEGDIE 57 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-----cCCCCeEE
Confidence 334666663 12467899999999999999999999754 35666653
No 459
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.59 E-value=0.0021 Score=69.86 Aligned_cols=49 Identities=31% Similarity=0.411 Sum_probs=38.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+.+++|++ +++..++|+||+|||||||++.|+..+. .+++.| +.|.++
T Consensus 333 ~l~~~~~~i---~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~i 382 (544)
T TIGR01842 333 TLRGISFRL---QAGEALAIIGPSGSGKSTLARLIVGIWP-----PTSGSVRLDGADL 382 (544)
T ss_pred ccccceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeh
Confidence 355688998 7889999999999999999999998664 455555 344444
No 460
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.59 E-value=0.0021 Score=71.36 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=32.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+-++||++ .++.+++|+||+|||||||++.|+..+.
T Consensus 31 ~l~~is~~v---~~Ge~~~lvG~nGsGKSTLl~~l~Gll~ 67 (623)
T PRK10261 31 AVRNLSFSL---QRGETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred EEEeeEEEE---CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 455699999 7889999999999999999999998653
No 461
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.59 E-value=0.0021 Score=71.66 Aligned_cols=42 Identities=29% Similarity=0.217 Sum_probs=35.0
Q ss_pred cceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 32 FATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 32 ~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
-+++|++ .++.+++|+||+|||||||.+.|+..+ ..|++.|+
T Consensus 329 ~~isl~i---~~Ge~~~l~G~NGsGKSTLlk~l~G~~-----~p~~G~i~ 370 (638)
T PRK10636 329 DSIKLNL---VPGSRIGLLGRNGAGKSTLIKLLAGEL-----APVSGEIG 370 (638)
T ss_pred ccceEEE---CCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCCeEE
Confidence 3488888 788999999999999999999999754 35677664
No 462
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.58 E-value=0.0018 Score=69.43 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=38.7
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..++++| +.|.++.
T Consensus 264 l~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 264 IRDVSFDL---HKGEILGIAGLVGAKRTDIVETLFGIR-----EKSAGTITLHGKKIN 313 (491)
T ss_pred cceeeEEE---eCCcEEEEecCCCCCHHHHHHHHcCCC-----cCCccEEEECCEECC
Confidence 44589999 788999999999999999999999754 3567776 3455553
No 463
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.58 E-value=0.0022 Score=63.94 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=31.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
-+-++||++ .++.+++|+||+|||||||++.|+..+
T Consensus 36 il~~vs~~i---~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 36 VLDQVSMGF---PARAVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred EeeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 345699999 788999999999999999999999754
No 464
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.58 E-value=0.002 Score=69.17 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=38.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+.. ..+++.| |.|.++
T Consensus 16 il~~isl~i---~~Ge~~~liG~nGsGKSTLl~~i~G~~~~---~~~~G~i~~~g~~~ 67 (500)
T TIGR02633 16 ALDGIDLEV---RPGECVGLCGENGAGKSTLMKILSGVYPH---GTWDGEIYWSGSPL 67 (500)
T ss_pred eecceEEEE---eCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCCCeEEEECCEEC
Confidence 355699999 78899999999999999999999975431 0256666 455554
No 465
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=96.57 E-value=0.0045 Score=57.88 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=24.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
+|+|++..|||++++|..||++||.++++-+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ 31 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDRE 31 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HH
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHH
Confidence 6999999999999999999999998885553
No 466
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.57 E-value=0.0017 Score=62.89 Aligned_cols=32 Identities=34% Similarity=0.630 Sum_probs=27.7
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHH
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLAL 62 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~ 62 (455)
.+.+-.+||++ +++.+++|+||+|||||||+.
T Consensus 8 ~~~l~~vsl~i---~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 8 EHNLKNVDVDI---PRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred hhccccceeec---CCCcEEEEEcCCCCCHHHHHH
Confidence 34556799999 889999999999999999973
No 467
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.57 E-value=0.0023 Score=71.72 Aligned_cols=48 Identities=33% Similarity=0.470 Sum_probs=38.3
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
+-++||++ +++..++|+||+|||||||++.|+..+. .++++| +.|.++
T Consensus 473 l~~i~l~i---~~G~~vaivG~sGsGKSTL~~ll~g~~~-----p~~G~I~idg~~i 521 (694)
T TIGR01846 473 LSNLNLDI---KPGEFIGIVGPSGSGKSTLTKLLQRLYT-----PQHGQVLVDGVDL 521 (694)
T ss_pred cccceEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEeh
Confidence 45688888 7889999999999999999999998664 566665 445544
No 468
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.56 E-value=0.0034 Score=61.96 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
....+++.||+|+|||++|+.+|+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999875
No 469
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.55 E-value=0.002 Score=70.25 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=35.1
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
+-++||++ .++.+++|+||+|||||||.+.|+..+ ..|++.|+
T Consensus 338 l~~isl~i---~~Ge~~~l~G~NGsGKSTLl~~l~G~~-----~p~~G~i~ 380 (552)
T TIGR03719 338 IDDLSFKL---PPGGIVGVIGPNGAGKSTLFRMITGQE-----QPDSGTIK 380 (552)
T ss_pred eccceEEE---cCCCEEEEECCCCCCHHHHHHHHcCCC-----CCCCeEEE
Confidence 33588888 788999999999999999999998654 35666664
No 470
>PLN02422 dephospho-CoA kinase
Probab=96.55 E-value=0.0024 Score=62.81 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=29.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++|+|+|+.||||||++..|+ ++|+.+|++|..
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~ 34 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKV 34 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHH
Confidence 379999999999999999999 689999999953
No 471
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.55 E-value=0.0028 Score=65.80 Aligned_cols=41 Identities=29% Similarity=0.588 Sum_probs=35.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC--CcEEEcCccceec
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN--GEIISADSVQVYR 82 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~--~~iIs~DS~qiYr 82 (455)
+.++-|.|+||+|+|||+||..+|+.|| .+|++.....||.
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 4578999999999999999999999997 5677777666665
No 472
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.55 E-value=0.0023 Score=69.04 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=38.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEE-cCcccee-ccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIIS-ADSVQVY-RGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs-~DS~qiY-r~l~I 86 (455)
.+.++||++ .++.+++|+||+|||||||.+.|+..+ . .|++.|+ .|.++
T Consensus 277 vl~~vsl~i---~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----~~~~~G~i~~~g~~~ 327 (506)
T PRK13549 277 RVDDVSFSL---RRGEILGIAGLVGAGRTELVQCLFGAY-----PGRWEGEIFIDGKPV 327 (506)
T ss_pred cccceeeEE---cCCcEEEEeCCCCCCHHHHHHHHhCCC-----CCCCCcEEEECCEEC
Confidence 345699999 888999999999999999999999643 3 3667763 45554
No 473
>PLN03232 ABC transporter C family member; Provisional
Probab=96.55 E-value=0.0019 Score=78.42 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=40.2
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
|-++||++ +++..|+|+||||||||||+..|.+-+ ..++++| ..|.|+.+
T Consensus 1252 L~~isl~I---~~GekvaIVG~SGSGKSTL~~lL~rl~-----~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1252 LHGLSFFV---SPSEKVGVVGRTGAGKSSMLNALFRIV-----ELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred cccceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----cCCCceEEECCEEhhh
Confidence 55699999 888999999999999999999999855 3566666 45666543
No 474
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.54 E-value=0.0019 Score=68.08 Aligned_cols=33 Identities=39% Similarity=0.555 Sum_probs=30.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+.|+|+|..||||||++..|++ +|+.+|++|.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i 34 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVL 34 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHH
Confidence 3699999999999999999997 89999999965
No 475
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.54 E-value=0.0024 Score=62.95 Aligned_cols=37 Identities=32% Similarity=0.396 Sum_probs=32.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+-++||++ .++.+++|+||+|||||||...|+..+.
T Consensus 22 il~~is~~i---~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 22 ILEGVSMEI---YQSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred EeeceEEEE---cCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 345699999 8889999999999999999999998654
No 476
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.0024 Score=67.50 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN-----GEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS 77 (455)
.++++|+|+|||||||||++..||..+- .-+|.+|.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 3468999999999999999999997662 33777876
No 477
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.52 E-value=0.0024 Score=70.94 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=36.0
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRG 83 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~ 83 (455)
+-.++|++ .++.+++|+||+|||||||.+.|+..+ ..|++.|+-+
T Consensus 335 l~~vsl~i---~~Ge~~~l~G~NGsGKSTLlk~l~G~~-----~p~~G~i~~~ 379 (635)
T PRK11147 335 VKDFSAQV---QRGDKIALIGPNGCGKTTLLKLMLGQL-----QADSGRIHCG 379 (635)
T ss_pred EcCcEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCCcEEEEC
Confidence 33588888 788999999999999999999999754 3566666543
No 478
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.0023 Score=67.32 Aligned_cols=27 Identities=37% Similarity=0.624 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+|+++||||+||||.+..||..+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999865
No 479
>CHL00181 cbbX CbbX; Provisional
Probab=96.52 E-value=0.022 Score=57.58 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+..+++.||+|+|||++|+.+|+.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999999875
No 480
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.51 E-value=0.0025 Score=66.75 Aligned_cols=43 Identities=23% Similarity=0.158 Sum_probs=37.5
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecc
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRG 83 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~ 83 (455)
.+.++.+.|.||+|+|||.+|.++|+++++.+|..++..++..
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 3567889999999999999999999999999999998766433
No 481
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.51 E-value=0.0091 Score=53.55 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=47.0
Q ss_pred cCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHH
Q 012837 40 SSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFF 119 (455)
Q Consensus 40 ~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~ 119 (455)
...|+.++.+-||||+|||-++..||+.+ |+.- -....-|+++...++...-.+..|.
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l------------y~~G----------~~S~~V~~f~~~~hFP~~~~v~~Yk 106 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL------------YKSG----------MKSPFVHQFIATHHFPHNSNVDEYK 106 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH------------Hhcc----------cCCCceeeecccccCCCchHHHHHH
Confidence 44566778899999999999999999985 3210 1122345666666655545677777
Q ss_pred HHHHHHHHHHHh
Q 012837 120 EDARHATKDVLK 131 (455)
Q Consensus 120 ~~a~~~i~~I~~ 131 (455)
..-.+.|.+...
T Consensus 107 ~~L~~~I~~~v~ 118 (127)
T PF06309_consen 107 EQLKSWIRGNVS 118 (127)
T ss_pred HHHHHHHHHHHH
Confidence 766666665544
No 482
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.51 E-value=0.0025 Score=69.17 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=34.9
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|++.|+
T Consensus 335 l~~is~~i---~~Ge~~~l~G~NGsGKSTLl~~i~G~~-----~p~~G~i~ 377 (530)
T PRK15064 335 FKNLNLLL---EAGERLAIIGENGVGKTTLLRTLVGEL-----EPDSGTVK 377 (530)
T ss_pred ecCcEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCeEEE
Confidence 34588998 788999999999999999999999644 35666654
No 483
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.0027 Score=66.79 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc-----CCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL-----NGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l-----~~~iIs~DS~ 78 (455)
..+++|+|+||+||||||++..||..+ ..-+|++|+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 567899999999999999999999765 2447888864
No 484
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.51 E-value=0.002 Score=61.12 Aligned_cols=24 Identities=33% Similarity=0.713 Sum_probs=22.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcC
Q 012837 46 VIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+|+|+|||||||||++..|+..++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999988775
No 485
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.0026 Score=61.31 Aligned_cols=39 Identities=33% Similarity=0.480 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC-CcEEEcCccceecc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN-GEIISADSVQVYRG 83 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~-~~iIs~DS~qiYr~ 83 (455)
+--+|+|+|-|.|||||||+.|++.++ +.+|+-|-. |+-
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDF--yKp 42 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDF--YKP 42 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccc--cCc
Confidence 446899999999999999999999995 789999954 653
No 486
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.51 E-value=0.0026 Score=67.47 Aligned_cols=33 Identities=45% Similarity=0.615 Sum_probs=29.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
..|.|.||||||||++|+.||+.++.+++..|.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da 149 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADA 149 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence 579999999999999999999999988766553
No 487
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0024 Score=61.83 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=37.7
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
+.+-.+||++ ..+.+..|.||+|+||||+.+.||.-+ ..|++.||
T Consensus 16 ~AvrdVSF~a---e~Gei~GlLG~NGAGKTT~LRmiatlL-----~P~~G~v~ 60 (245)
T COG4555 16 QAVRDVSFEA---EEGEITGLLGENGAGKTTLLRMIATLL-----IPDSGKVT 60 (245)
T ss_pred hhhhheeEEe---ccceEEEEEcCCCCCchhHHHHHHHhc-----cCCCceEE
Confidence 3445699999 899999999999999999999999854 57777653
No 488
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.49 E-value=0.0021 Score=60.55 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+.++++|+|++|||||||+..|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456999999999999999999998875
No 489
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.48 E-value=0.0026 Score=69.92 Aligned_cols=47 Identities=34% Similarity=0.539 Sum_probs=37.2
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLD 85 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~ 85 (455)
+-+++|++ +++..++|+||+|||||||+..|+..+. .+++.| +.|.+
T Consensus 351 l~~i~~~i---~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~ 398 (585)
T TIGR01192 351 VFDVSFEA---KAGQTVAIVGPTGAGKTTLINLLQRVYD-----PTVGQILIDGID 398 (585)
T ss_pred ccceeEEE---cCCCEEEEECCCCCCHHHHHHHHccCCC-----CCCCEEEECCEE
Confidence 55688998 7889999999999999999999998653 456655 33443
No 490
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.48 E-value=0.0026 Score=69.55 Aligned_cols=44 Identities=30% Similarity=0.313 Sum_probs=35.5
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceec
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYR 82 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr 82 (455)
+-++||++ .++.+++|+||+|||||||.+.|+..+ ..|++.|+-
T Consensus 340 l~~isl~i---~~Ge~~~l~G~NGsGKSTLl~~i~G~~-----~p~~G~i~~ 383 (556)
T PRK11819 340 IDDLSFSL---PPGGIVGIIGPNGAGKSTLFKMITGQE-----QPDSGTIKI 383 (556)
T ss_pred ecceeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCeEEEE
Confidence 33588888 788999999999999999999999644 366777653
No 491
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.48 E-value=0.0025 Score=68.93 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=38.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.+-++.
T Consensus 278 ~l~~isl~i---~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-----~p~~G~i~~~g~~i~ 328 (510)
T PRK15439 278 GFRNISLEV---RAGEILGLAGVVGAGRTELAETLYGLR-----PARGGRIMLNGKEIN 328 (510)
T ss_pred CccceeEEE---cCCcEEEEECCCCCCHHHHHHHHcCCC-----CCCCcEEEECCEECC
Confidence 355689999 788999999999999999999999754 3456665 3454443
No 492
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.48 E-value=0.0025 Score=59.79 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
..+..++|+|||||||||+...|+..++
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 5678999999999999999999998664
No 493
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.0036 Score=60.76 Aligned_cols=28 Identities=46% Similarity=0.738 Sum_probs=25.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcE
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEI 72 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~i 72 (455)
++|++.|++||||||+|+.||+.|.-++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 5899999999999999999999996443
No 494
>COG0645 Predicted kinase [General function prediction only]
Probab=96.47 E-value=0.0083 Score=56.26 Aligned_cols=34 Identities=32% Similarity=0.551 Sum_probs=32.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+++.+.|-+|||||+||..|++.+++..|..|.+
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i 35 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI 35 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHH
Confidence 5789999999999999999999999999999965
No 495
>PLN03130 ABC transporter C family member; Provisional
Probab=96.46 E-value=0.0024 Score=78.03 Aligned_cols=49 Identities=29% Similarity=0.398 Sum_probs=39.9
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
|-++||++ +++..|+|+|+||||||||+..|.+-+. .++++| ..|.+|.
T Consensus 1255 L~~is~~I---~~GekVaIVGrSGSGKSTLl~lL~rl~~-----p~~G~I~IDG~dI~ 1304 (1622)
T PLN03130 1255 LHGLSFEI---SPSEKVGIVGRTGAGKSSMLNALFRIVE-----LERGRILIDGCDIS 1304 (1622)
T ss_pred ecceeEEE---cCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCEecc
Confidence 55699999 7889999999999999999999998553 566666 4566654
No 496
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.46 E-value=0.0029 Score=62.50 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=36.3
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.-+-++++++ .++.+.+|+||+|||||+|.+.+...+. .|++.|
T Consensus 22 ~Ild~v~l~V---~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI 65 (263)
T COG1127 22 VILDGVDLDV---PRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEI 65 (263)
T ss_pred EEecCceeee---cCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeE
Confidence 3334599999 8999999999999999999999987654 666665
No 497
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.46 E-value=0.0028 Score=63.49 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=31.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
-+-+++|++ .++.+++|+||+|||||||.+.|+..
T Consensus 54 il~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 54 AVKKVNADI---LSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344699999 78899999999999999999999974
No 498
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.45 E-value=0.0026 Score=62.93 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.++.+++|+||+|||||||.+.|+..+. .++++|
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I 57 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKF 57 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceE
Confidence 6889999999999999999999998653 667766
No 499
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0025 Score=70.88 Aligned_cols=38 Identities=26% Similarity=0.497 Sum_probs=32.8
Q ss_pred cCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 40 SSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 40 ~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
...++++++++||+|+|||+|++.+|+.+|-+|+-.-=
T Consensus 346 ~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sL 383 (782)
T COG0466 346 KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISL 383 (782)
T ss_pred ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEec
Confidence 34578999999999999999999999999988765543
No 500
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.45 E-value=0.0026 Score=77.33 Aligned_cols=51 Identities=29% Similarity=0.393 Sum_probs=40.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
-|-++||++ +++..|+|+|+||||||||+..|.+-+. .++++| ..|.||.+
T Consensus 1301 vL~~is~~I---~~GekiaIVGrTGsGKSTL~~lL~rl~~-----~~~G~I~IdG~dI~~ 1352 (1522)
T TIGR00957 1301 VLRHINVTI---HGGEKVGIVGRTGAGKSSLTLGLFRINE-----SAEGEIIIDGLNIAK 1352 (1522)
T ss_pred cccceeEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcc-----CCCCeEEECCEEccc
Confidence 355699999 8889999999999999999999988553 566665 45666543
Done!