Query 012837
Match_columns 455
No_of_seqs 235 out of 2330
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3exa_A TRNA delta(2)-isopenten 100.0 1.3E-79 4.4E-84 617.7 33.4 302 43-389 2-306 (322)
2 3foz_A TRNA delta(2)-isopenten 100.0 6.2E-79 2.1E-83 611.8 30.9 299 42-386 8-309 (316)
3 3crm_A TRNA delta(2)-isopenten 100.0 4.1E-72 1.4E-76 565.8 25.8 309 43-385 4-317 (323)
4 3eph_A TRNA isopentenyltransfe 100.0 1.5E-72 5.3E-77 582.9 22.8 287 44-375 2-307 (409)
5 3d3q_A TRNA delta(2)-isopenten 100.0 3.2E-68 1.1E-72 540.6 27.6 284 44-374 7-296 (340)
6 3a8t_A Adenylate isopentenyltr 100.0 3.3E-57 1.1E-61 459.2 22.5 246 42-374 38-302 (339)
7 2ze6_A Isopentenyl transferase 100.0 1.3E-30 4.5E-35 253.0 20.5 214 45-364 2-224 (253)
8 2qmh_A HPR kinase/phosphorylas 99.4 8.7E-14 3E-18 131.7 4.2 92 19-121 13-111 (205)
9 3ney_A 55 kDa erythrocyte memb 99.0 2E-10 6.8E-15 108.2 4.3 91 42-140 17-117 (197)
10 3tau_A Guanylate kinase, GMP k 99.0 1.7E-10 5.7E-15 107.7 3.1 98 42-147 6-116 (208)
11 1ex7_A Guanylate kinase; subst 98.9 5.5E-10 1.9E-14 104.1 3.0 88 45-140 2-99 (186)
12 1kgd_A CASK, peripheral plasma 98.8 3E-09 1E-13 96.8 3.7 90 42-139 3-102 (180)
13 3tr0_A Guanylate kinase, GMP k 98.6 1.1E-08 3.8E-13 93.4 3.0 96 42-146 5-113 (205)
14 3trf_A Shikimate kinase, SK; a 98.6 1.9E-08 6.6E-13 90.7 4.4 81 43-142 4-84 (185)
15 3vaa_A Shikimate kinase, SK; s 98.6 2.5E-08 8.6E-13 91.8 3.8 44 32-78 16-59 (199)
16 2qor_A Guanylate kinase; phosp 98.5 3E-08 1E-12 91.7 2.5 91 42-140 10-110 (204)
17 3lnc_A Guanylate kinase, GMP k 98.4 2.6E-08 8.7E-13 93.8 -0.3 62 33-106 19-81 (231)
18 3r20_A Cytidylate kinase; stru 98.4 4.6E-07 1.6E-11 87.2 7.3 43 42-86 7-49 (233)
19 3a00_A Guanylate kinase, GMP k 98.3 1.8E-07 6.1E-12 85.3 2.7 88 44-139 1-98 (186)
20 1z6g_A Guanylate kinase; struc 98.2 1.8E-06 6.2E-11 81.1 5.8 62 31-103 13-74 (218)
21 3zvl_A Bifunctional polynucleo 98.1 1.4E-05 4.9E-10 82.5 12.4 37 42-78 256-292 (416)
22 3fdi_A Uncharacterized protein 98.1 4.4E-06 1.5E-10 77.9 7.8 39 43-84 5-43 (201)
23 3nwj_A ATSK2; P loop, shikimat 98.1 8.4E-07 2.9E-11 86.0 1.3 93 31-141 35-128 (250)
24 2jeo_A Uridine-cytidine kinase 98.1 2.9E-06 9.9E-11 80.7 5.0 41 28-71 12-52 (245)
25 3t61_A Gluconokinase; PSI-biol 98.0 2.9E-06 9.9E-11 77.7 4.7 36 43-78 17-52 (202)
26 4e22_A Cytidylate kinase; P-lo 98.0 1.5E-06 5E-11 83.5 2.7 43 42-86 25-67 (252)
27 1y63_A LMAJ004144AAA protein; 98.0 2.4E-06 8.3E-11 77.6 4.0 42 34-78 3-45 (184)
28 1ly1_A Polynucleotide kinase; 98.0 4.4E-06 1.5E-10 74.1 5.5 34 44-77 2-36 (181)
29 3kb2_A SPBC2 prophage-derived 98.0 3.4E-06 1.2E-10 74.3 4.7 34 45-78 2-35 (173)
30 1tev_A UMP-CMP kinase; ploop, 98.0 2.7E-06 9.1E-11 76.3 3.9 36 43-78 2-37 (196)
31 1s96_A Guanylate kinase, GMP k 98.0 2.9E-06 9.8E-11 80.5 3.7 92 41-139 13-114 (219)
32 1qhx_A CPT, protein (chloramph 98.0 4.7E-06 1.6E-10 74.3 4.8 35 43-77 2-38 (178)
33 1gvn_B Zeta; postsegregational 98.0 4E-06 1.4E-10 82.4 4.5 36 42-77 31-68 (287)
34 2rhm_A Putative kinase; P-loop 98.0 4.4E-06 1.5E-10 75.1 4.2 37 42-78 3-39 (193)
35 1kag_A SKI, shikimate kinase I 98.0 4E-06 1.4E-10 74.4 3.8 35 43-77 3-37 (173)
36 1zuh_A Shikimate kinase; alpha 97.9 5.9E-06 2E-10 73.3 4.8 34 45-78 8-41 (168)
37 2c95_A Adenylate kinase 1; tra 97.9 4.7E-06 1.6E-10 75.2 4.0 36 42-77 7-42 (196)
38 3iij_A Coilin-interacting nucl 97.9 5.1E-06 1.7E-10 74.6 4.0 36 42-77 9-44 (180)
39 2iyv_A Shikimate kinase, SK; t 97.9 4.1E-06 1.4E-10 75.3 3.4 34 45-78 3-36 (184)
40 1knq_A Gluconate kinase; ALFA/ 97.9 7.7E-06 2.6E-10 72.9 5.1 37 42-78 6-42 (175)
41 1cke_A CK, MSSA, protein (cyti 97.9 5E-06 1.7E-10 77.0 3.8 40 43-84 4-43 (227)
42 1qf9_A UMP/CMP kinase, protein 97.9 6.1E-06 2.1E-10 73.8 4.2 35 43-77 5-39 (194)
43 1uj2_A Uridine-cytidine kinase 97.9 9.4E-06 3.2E-10 77.5 5.3 41 42-84 20-70 (252)
44 3cm0_A Adenylate kinase; ATP-b 97.9 5.3E-06 1.8E-10 74.5 3.3 36 42-77 2-37 (186)
45 2j41_A Guanylate kinase; GMP, 97.9 5.9E-06 2E-10 75.1 3.7 27 42-68 4-30 (207)
46 1kht_A Adenylate kinase; phosp 97.9 5.3E-06 1.8E-10 74.2 3.2 35 43-77 2-41 (192)
47 3lw7_A Adenylate kinase relate 97.9 7.3E-06 2.5E-10 71.6 3.8 31 45-76 2-32 (179)
48 1ukz_A Uridylate kinase; trans 97.9 9E-06 3.1E-10 74.3 4.5 36 42-77 13-48 (203)
49 1lvg_A Guanylate kinase, GMP k 97.9 1.3E-05 4.5E-10 74.0 5.5 55 43-105 3-57 (198)
50 2cdn_A Adenylate kinase; phosp 97.9 9.3E-06 3.2E-10 74.3 4.4 36 42-77 18-53 (201)
51 2bwj_A Adenylate kinase 5; pho 97.8 7.9E-06 2.7E-10 73.8 3.7 36 43-78 11-46 (199)
52 1via_A Shikimate kinase; struc 97.8 7.4E-06 2.5E-10 73.3 3.4 34 45-78 5-38 (175)
53 2p5t_B PEZT; postsegregational 97.8 3.2E-05 1.1E-09 74.0 8.0 36 42-77 30-67 (253)
54 1uf9_A TT1252 protein; P-loop, 97.8 9.1E-06 3.1E-10 73.7 3.9 36 42-78 6-41 (203)
55 4eun_A Thermoresistant glucoki 97.8 1.3E-05 4.4E-10 73.6 4.9 36 42-77 27-62 (200)
56 1e6c_A Shikimate kinase; phosp 97.8 9E-06 3.1E-10 72.0 3.7 34 45-78 3-36 (173)
57 1aky_A Adenylate kinase; ATP:A 97.8 1.1E-05 3.7E-10 75.0 4.1 36 42-77 2-37 (220)
58 2qt1_A Nicotinamide riboside k 97.8 1.2E-05 4.1E-10 73.9 4.3 41 38-78 15-56 (207)
59 1nks_A Adenylate kinase; therm 97.8 1.1E-05 3.8E-10 72.1 3.7 25 45-69 2-26 (194)
60 1zd8_A GTP:AMP phosphotransfer 97.8 1.1E-05 3.9E-10 75.3 3.9 36 42-77 5-40 (227)
61 3ake_A Cytidylate kinase; CMP 97.8 1.2E-05 4E-10 73.2 3.7 38 45-84 3-40 (208)
62 2grj_A Dephospho-COA kinase; T 97.8 1.2E-05 4E-10 74.8 3.4 37 42-78 10-46 (192)
63 3asz_A Uridine kinase; cytidin 97.8 1.4E-05 4.8E-10 73.4 3.9 37 42-78 4-42 (211)
64 2pt5_A Shikimate kinase, SK; a 97.7 1.5E-05 5.3E-10 70.2 3.9 33 46-78 2-34 (168)
65 3umf_A Adenylate kinase; rossm 97.7 1.2E-05 4E-10 76.5 3.3 40 41-82 26-65 (217)
66 1a7j_A Phosphoribulokinase; tr 97.7 7.5E-06 2.6E-10 80.7 1.7 39 42-82 3-46 (290)
67 3fb4_A Adenylate kinase; psych 97.7 1.7E-05 5.7E-10 73.1 3.9 32 46-77 2-33 (216)
68 1kjw_A Postsynaptic density pr 97.7 1.2E-05 4.3E-10 79.6 3.2 88 42-140 103-201 (295)
69 2if2_A Dephospho-COA kinase; a 97.7 1.6E-05 5.4E-10 72.7 3.6 32 45-77 2-33 (204)
70 3dl0_A Adenylate kinase; phosp 97.7 1.8E-05 6.2E-10 73.0 4.1 32 46-77 2-33 (216)
71 3tlx_A Adenylate kinase 2; str 97.7 2E-05 6.7E-10 75.2 4.3 36 42-77 27-62 (243)
72 1zak_A Adenylate kinase; ATP:A 97.7 1.3E-05 4.5E-10 74.5 2.8 35 43-77 4-38 (222)
73 3be4_A Adenylate kinase; malar 97.7 1.7E-05 5.8E-10 73.9 3.6 37 42-78 3-39 (217)
74 2f6r_A COA synthase, bifunctio 97.7 2.2E-05 7.4E-10 76.8 4.0 35 43-78 74-108 (281)
75 1vht_A Dephospho-COA kinase; s 97.7 2.5E-05 8.5E-10 72.3 4.2 35 43-78 3-37 (218)
76 1jjv_A Dephospho-COA kinase; P 97.7 2.1E-05 7.3E-10 72.0 3.7 33 45-78 3-35 (206)
77 3hdt_A Putative kinase; struct 97.7 4.7E-05 1.6E-09 72.5 6.1 36 42-77 12-47 (223)
78 1znw_A Guanylate kinase, GMP k 97.6 5.4E-05 1.9E-09 69.9 6.1 28 42-69 18-45 (207)
79 2pbr_A DTMP kinase, thymidylat 97.6 3.2E-05 1.1E-09 69.3 4.2 32 45-76 1-35 (195)
80 1zp6_A Hypothetical protein AT 97.6 3.5E-05 1.2E-09 69.3 4.3 35 42-76 7-41 (191)
81 3tif_A Uncharacterized ABC tra 97.6 3.2E-05 1.1E-09 73.9 4.1 50 30-87 20-70 (235)
82 2h92_A Cytidylate kinase; ross 97.6 2.5E-05 8.7E-10 72.1 3.2 40 43-84 2-41 (219)
83 2vli_A Antibiotic resistance p 97.6 2.9E-05 1E-09 69.2 3.4 31 43-73 4-34 (183)
84 3tvt_A Disks large 1 tumor sup 97.6 4.6E-05 1.6E-09 75.6 5.0 87 42-139 98-195 (292)
85 4g1u_C Hemin import ATP-bindin 97.6 3.2E-05 1.1E-09 75.4 3.8 52 29-88 25-77 (266)
86 4gp7_A Metallophosphoesterase; 97.6 3E-05 1E-09 69.8 3.4 38 34-76 2-39 (171)
87 1mv5_A LMRA, multidrug resista 97.6 5.4E-05 1.8E-09 72.5 5.2 50 30-87 17-67 (243)
88 1b0u_A Histidine permease; ABC 97.6 3.8E-05 1.3E-09 74.5 4.2 49 30-86 21-70 (262)
89 2v54_A DTMP kinase, thymidylat 97.6 4.3E-05 1.5E-09 69.3 4.1 33 43-75 3-36 (204)
90 1ak2_A Adenylate kinase isoenz 97.6 4.4E-05 1.5E-09 71.8 4.2 35 43-77 15-49 (233)
91 2wwf_A Thymidilate kinase, put 97.6 2E-05 6.7E-10 72.1 1.7 35 42-76 8-42 (212)
92 3sr0_A Adenylate kinase; phosp 97.5 2.7E-05 9.1E-10 73.2 2.5 36 45-82 1-36 (206)
93 3uie_A Adenylyl-sulfate kinase 97.5 4.9E-05 1.7E-09 69.7 4.1 28 42-69 23-50 (200)
94 2bbw_A Adenylate kinase 4, AK4 97.5 3.6E-05 1.2E-09 72.9 3.3 34 43-76 26-59 (246)
95 2olj_A Amino acid ABC transpor 97.5 4.7E-05 1.6E-09 74.2 4.2 50 30-87 39-89 (263)
96 1e4v_A Adenylate kinase; trans 97.5 4.4E-05 1.5E-09 70.7 3.7 32 46-77 2-33 (214)
97 3nh6_A ATP-binding cassette SU 97.5 4E-05 1.4E-09 76.5 3.5 50 30-87 69-119 (306)
98 2onk_A Molybdate/tungstate ABC 97.5 9.5E-05 3.2E-09 71.0 6.0 48 31-87 15-63 (240)
99 2ff7_A Alpha-hemolysin translo 97.5 4.7E-05 1.6E-09 73.3 3.8 50 30-87 24-74 (247)
100 2pcj_A ABC transporter, lipopr 97.5 4.3E-05 1.5E-09 72.4 3.5 50 30-87 19-69 (224)
101 1sxj_A Activator 1 95 kDa subu 97.5 0.00021 7.2E-09 75.5 9.1 38 43-80 76-113 (516)
102 3c8u_A Fructokinase; YP_612366 97.5 4.5E-05 1.6E-09 70.5 3.5 36 42-77 20-60 (208)
103 1q3t_A Cytidylate kinase; nucl 97.5 5E-05 1.7E-09 71.6 3.8 41 42-84 14-54 (236)
104 2plr_A DTMP kinase, probable t 97.5 7.3E-05 2.5E-09 67.8 4.6 29 42-70 2-30 (213)
105 2pez_A Bifunctional 3'-phospho 97.5 7E-05 2.4E-09 67.1 4.4 38 42-79 3-43 (179)
106 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.00016 5.6E-09 69.3 7.3 34 43-76 3-41 (260)
107 3gfo_A Cobalt import ATP-bindi 97.5 4.9E-05 1.7E-09 74.5 3.7 49 30-86 23-72 (275)
108 1m7g_A Adenylylsulfate kinase; 97.5 0.00015 5.3E-09 66.9 6.6 28 42-69 23-50 (211)
109 2bdt_A BH3686; alpha-beta prot 97.5 6.5E-05 2.2E-09 67.8 3.9 34 44-77 2-36 (189)
110 2xb4_A Adenylate kinase; ATP-b 97.5 6.2E-05 2.1E-09 70.5 3.8 32 46-77 2-33 (223)
111 2cbz_A Multidrug resistance-as 97.5 5.3E-05 1.8E-09 72.4 3.3 43 30-80 20-62 (237)
112 2ihy_A ABC transporter, ATP-bi 97.5 6.6E-05 2.3E-09 73.7 4.0 49 30-86 36-85 (279)
113 2pze_A Cystic fibrosis transme 97.4 6.2E-05 2.1E-09 71.5 3.7 43 30-80 23-65 (229)
114 3fvq_A Fe(3+) IONS import ATP- 97.4 0.00015 5.3E-09 73.9 6.8 51 29-87 18-69 (359)
115 1ji0_A ABC transporter; ATP bi 97.4 6.3E-05 2.2E-09 71.9 3.7 49 30-86 21-70 (240)
116 2jaq_A Deoxyguanosine kinase; 97.4 7.8E-05 2.7E-09 67.3 4.1 29 45-73 1-29 (205)
117 1g6h_A High-affinity branched- 97.4 5.9E-05 2E-09 72.9 3.4 49 30-86 22-71 (257)
118 1ltq_A Polynucleotide kinase; 97.4 6.6E-05 2.3E-09 72.7 3.5 33 44-76 2-35 (301)
119 2ixe_A Antigen peptide transpo 97.4 8.1E-05 2.8E-09 72.6 4.1 49 30-86 34-83 (271)
120 1sgw_A Putative ABC transporte 97.4 6.5E-05 2.2E-09 71.0 3.2 49 30-86 24-73 (214)
121 2yz2_A Putative ABC transporte 97.4 8.6E-05 2.9E-09 72.1 4.1 49 30-86 22-71 (266)
122 1nn5_A Similar to deoxythymidy 97.4 4.1E-05 1.4E-09 69.9 1.6 30 42-71 7-36 (215)
123 1vpl_A ABC transporter, ATP-bi 97.4 9.1E-05 3.1E-09 71.8 4.1 49 30-86 30-79 (256)
124 2kjq_A DNAA-related protein; s 97.4 0.00033 1.1E-08 62.0 7.0 26 43-68 35-60 (149)
125 3tui_C Methionine import ATP-b 97.3 0.00014 4.9E-09 74.3 5.1 52 30-89 43-95 (366)
126 2z0h_A DTMP kinase, thymidylat 97.3 0.00013 4.3E-09 65.7 4.2 30 46-75 2-34 (197)
127 2nq2_C Hypothetical ABC transp 97.3 9.8E-05 3.4E-09 71.3 3.7 44 30-81 20-63 (253)
128 2d2e_A SUFC protein; ABC-ATPas 97.3 0.0001 3.5E-09 70.9 3.6 52 30-87 18-70 (250)
129 3rlf_A Maltose/maltodextrin im 97.3 0.00014 5E-09 74.6 4.9 52 29-88 17-69 (381)
130 2yyz_A Sugar ABC transporter, 97.3 0.00015 5.2E-09 73.9 5.0 50 30-87 18-68 (359)
131 1sq5_A Pantothenate kinase; P- 97.3 0.00014 4.7E-09 71.9 4.5 37 42-78 78-121 (308)
132 2it1_A 362AA long hypothetical 97.3 0.00017 5.9E-09 73.5 4.9 50 30-87 18-68 (362)
133 1c9k_A COBU, adenosylcobinamid 97.3 2.5E-05 8.5E-10 72.4 -1.3 91 46-152 1-92 (180)
134 1z47_A CYSA, putative ABC-tran 97.3 0.00017 5.7E-09 73.5 4.6 50 30-87 30-80 (355)
135 2v9p_A Replication protein E1; 97.3 0.00011 3.6E-09 73.4 3.1 40 31-73 116-155 (305)
136 1v43_A Sugar-binding transport 97.2 0.0002 6.8E-09 73.3 4.9 50 30-87 26-76 (372)
137 2yvu_A Probable adenylyl-sulfa 97.2 0.00014 4.7E-09 65.6 3.3 28 42-69 11-38 (186)
138 3tqc_A Pantothenate kinase; bi 97.2 0.00021 7.2E-09 71.7 4.8 37 42-78 90-133 (321)
139 2bbs_A Cystic fibrosis transme 97.2 0.00015 5.2E-09 71.6 3.4 43 30-80 53-95 (290)
140 1oxx_K GLCV, glucose, ABC tran 97.2 0.00018 6E-09 73.1 3.8 50 30-87 20-70 (353)
141 3d31_A Sulfate/molybdate ABC t 97.2 0.00019 6.4E-09 72.8 3.9 50 30-87 15-65 (348)
142 3t15_A Ribulose bisphosphate c 97.1 0.00024 8.2E-09 69.6 4.2 39 41-79 33-71 (293)
143 1g29_1 MALK, maltose transport 97.1 0.00024 8E-09 72.7 4.2 50 30-87 18-68 (372)
144 1odf_A YGR205W, hypothetical 3 97.1 0.00026 8.9E-09 69.8 4.4 37 42-78 29-73 (290)
145 2qi9_C Vitamin B12 import ATP- 97.1 0.0002 6.8E-09 69.1 3.4 48 30-86 15-63 (249)
146 1rz3_A Hypothetical protein rb 97.1 0.00032 1.1E-08 64.5 4.6 27 42-68 20-46 (201)
147 1htw_A HI0065; nucleotide-bind 97.1 0.00022 7.4E-09 64.2 3.3 36 30-68 22-57 (158)
148 2pjz_A Hypothetical protein ST 97.1 0.0002 6.9E-09 69.7 3.3 48 30-87 20-68 (263)
149 2zu0_C Probable ATP-dependent 97.1 0.00032 1.1E-08 68.2 4.5 52 30-87 35-87 (267)
150 3gd7_A Fusion complex of cysti 97.1 0.00026 8.8E-09 72.9 3.9 50 30-88 36-86 (390)
151 2ghi_A Transport protein; mult 97.1 0.00029 1E-08 68.2 4.0 48 30-86 35-83 (260)
152 1lv7_A FTSH; alpha/beta domain 97.1 0.00046 1.6E-08 65.3 5.2 34 44-77 45-78 (257)
153 4eaq_A DTMP kinase, thymidylat 97.1 0.00048 1.6E-08 65.2 5.2 36 34-69 16-51 (229)
154 3b5x_A Lipid A export ATP-bind 97.0 0.00037 1.3E-08 74.8 4.7 50 30-87 358-408 (582)
155 1ixz_A ATP-dependent metallopr 97.0 0.00037 1.3E-08 65.9 3.9 41 31-76 41-81 (254)
156 3b60_A Lipid A export ATP-bind 97.0 0.00037 1.3E-08 74.7 4.1 49 30-86 358-407 (582)
157 3ec2_A DNA replication protein 97.0 0.00031 1.1E-08 62.9 2.8 27 42-68 36-62 (180)
158 1svm_A Large T antigen; AAA+ f 97.0 0.00035 1.2E-08 71.6 3.5 39 33-74 161-199 (377)
159 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.00059 2E-08 64.1 4.7 36 42-77 37-72 (262)
160 2xkx_A Disks large homolog 4; 97.0 0.0023 7.9E-08 70.5 10.1 95 43-149 530-635 (721)
161 2p65_A Hypothetical protein PF 97.0 0.00062 2.1E-08 59.7 4.6 26 43-68 42-67 (187)
162 3qf4_B Uncharacterized ABC tra 96.9 0.00032 1.1E-08 75.6 3.2 51 30-88 370-421 (598)
163 2x8a_A Nuclear valosin-contain 96.9 0.0004 1.4E-08 67.5 3.5 39 33-76 38-76 (274)
164 3h4m_A Proteasome-activating n 96.9 0.00071 2.4E-08 64.7 5.2 36 42-77 49-84 (285)
165 1jbk_A CLPB protein; beta barr 96.9 0.00077 2.6E-08 58.9 4.9 27 43-69 42-68 (195)
166 1d2n_A N-ethylmaleimide-sensit 96.9 0.00067 2.3E-08 64.8 4.8 36 42-77 62-97 (272)
167 3cf0_A Transitional endoplasmi 96.9 0.00073 2.5E-08 66.1 5.1 37 42-78 47-83 (301)
168 4a82_A Cystic fibrosis transme 96.9 0.00031 1.1E-08 75.3 2.6 50 30-87 356-406 (578)
169 1iy2_A ATP-dependent metallopr 96.9 0.00052 1.8E-08 66.0 4.0 39 33-76 67-105 (278)
170 3qf4_A ABC transporter, ATP-bi 96.9 0.00041 1.4E-08 74.7 3.4 50 30-87 358-408 (587)
171 3bos_A Putative DNA replicatio 96.9 0.0022 7.6E-08 58.6 8.0 27 43-69 51-77 (242)
172 2yl4_A ATP-binding cassette SU 96.9 0.00036 1.2E-08 75.1 2.9 50 30-87 359-409 (595)
173 3euj_A Chromosome partition pr 96.9 0.0012 4.1E-08 69.8 6.7 52 29-89 18-70 (483)
174 3b9p_A CG5977-PA, isoform A; A 96.9 0.00084 2.9E-08 64.7 5.1 35 43-77 53-87 (297)
175 1x6v_B Bifunctional 3'-phospho 96.9 0.0017 5.8E-08 70.8 7.9 36 43-78 51-89 (630)
176 2gza_A Type IV secretion syste 96.8 0.00033 1.1E-08 70.9 2.0 35 32-69 166-200 (361)
177 3hws_A ATP-dependent CLP prote 96.8 0.00073 2.5E-08 67.6 4.4 36 43-78 50-85 (363)
178 1gtv_A TMK, thymidylate kinase 96.8 0.00039 1.3E-08 63.4 2.0 25 45-69 1-25 (214)
179 1ofh_A ATP-dependent HSL prote 96.8 0.00085 2.9E-08 64.3 4.4 36 43-78 49-84 (310)
180 3aez_A Pantothenate kinase; tr 96.7 0.00084 2.9E-08 66.8 4.1 28 42-69 88-115 (312)
181 3b9q_A Chloroplast SRP recepto 96.7 0.00078 2.7E-08 66.7 3.8 32 34-68 93-124 (302)
182 1um8_A ATP-dependent CLP prote 96.7 0.001 3.6E-08 66.7 4.7 35 44-78 72-106 (376)
183 3lv8_A DTMP kinase, thymidylat 96.7 0.00074 2.5E-08 64.8 3.2 28 42-69 25-52 (236)
184 1ye8_A Protein THEP1, hypothet 96.7 0.00096 3.3E-08 60.9 3.8 25 46-70 2-26 (178)
185 3tqf_A HPR(Ser) kinase; transf 96.7 0.0012 4.1E-08 61.1 4.4 46 43-89 15-62 (181)
186 4i1u_A Dephospho-COA kinase; s 96.7 0.00091 3.1E-08 63.3 3.6 34 44-78 9-42 (210)
187 1p5z_B DCK, deoxycytidine kina 96.7 0.00059 2E-08 65.2 2.2 32 42-73 22-54 (263)
188 3gmt_A Adenylate kinase; ssgci 96.6 0.00097 3.3E-08 64.0 3.5 33 44-76 8-40 (230)
189 2vp4_A Deoxynucleoside kinase; 96.6 0.00084 2.9E-08 63.0 3.0 30 42-72 18-47 (230)
190 3syl_A Protein CBBX; photosynt 96.6 0.0018 6.1E-08 62.5 5.3 28 42-69 65-92 (309)
191 4b4t_K 26S protease regulatory 96.6 0.0014 4.9E-08 68.2 4.9 37 42-78 204-240 (428)
192 2eyu_A Twitching motility prot 96.6 0.0011 3.9E-08 64.1 3.8 27 42-68 23-49 (261)
193 2cvh_A DNA repair and recombin 96.6 0.0018 6.3E-08 58.9 4.7 32 42-73 18-49 (220)
194 4b4t_M 26S protease regulatory 96.6 0.0016 5.4E-08 68.0 4.7 38 42-79 213-250 (434)
195 1rj9_A FTSY, signal recognitio 96.6 0.0014 4.7E-08 65.1 4.1 27 43-69 101-127 (304)
196 3eie_A Vacuolar protein sortin 96.6 0.0016 5.4E-08 64.2 4.6 35 43-77 50-84 (322)
197 1l8q_A Chromosomal replication 96.5 0.00082 2.8E-08 65.9 2.5 38 43-80 36-76 (324)
198 3d8b_A Fidgetin-like protein 1 96.5 0.0019 6.6E-08 64.7 5.2 35 43-77 116-150 (357)
199 2og2_A Putative signal recogni 96.5 0.0013 4.3E-08 67.1 3.8 32 34-68 150-181 (359)
200 4f4c_A Multidrug resistance pr 96.5 0.00092 3.1E-08 78.5 2.9 50 31-88 1095-1145(1321)
201 2ehv_A Hypothetical protein PH 96.5 0.0013 4.4E-08 61.1 3.4 24 42-65 28-51 (251)
202 2ocp_A DGK, deoxyguanosine kin 96.5 0.0022 7.7E-08 60.2 5.1 28 43-70 1-28 (241)
203 4b4t_L 26S protease subunit RP 96.5 0.0017 6E-08 67.7 4.6 37 42-78 213-249 (437)
204 4a74_A DNA repair and recombin 96.5 0.0014 4.8E-08 60.0 3.4 27 42-68 23-49 (231)
205 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.00053 1.8E-08 68.7 0.6 34 33-69 163-196 (330)
206 1tue_A Replication protein E1; 96.5 0.0017 5.7E-08 61.7 4.0 35 42-76 56-90 (212)
207 2r62_A Cell division protease 96.5 0.00079 2.7E-08 63.8 1.8 34 44-77 44-77 (268)
208 1g8f_A Sulfate adenylyltransfe 96.5 0.0013 4.6E-08 69.9 3.7 29 42-70 393-421 (511)
209 3pfi_A Holliday junction ATP-d 96.5 0.002 6.8E-08 63.2 4.6 34 43-76 54-87 (338)
210 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0023 7.8E-08 63.4 4.9 35 43-77 44-79 (322)
211 4b4t_J 26S protease regulatory 96.4 0.0019 6.6E-08 66.8 4.5 37 42-78 180-216 (405)
212 2c9o_A RUVB-like 1; hexameric 96.4 0.0023 7.8E-08 66.4 5.0 39 43-81 62-102 (456)
213 3vfd_A Spastin; ATPase, microt 96.4 0.0027 9.3E-08 64.2 5.4 35 44-78 148-182 (389)
214 1g41_A Heat shock protein HSLU 96.4 0.0019 6.4E-08 67.7 4.3 35 44-78 50-84 (444)
215 3tsz_A Tight junction protein 96.4 0.0044 1.5E-07 63.6 7.0 65 43-139 231-295 (391)
216 2w58_A DNAI, primosome compone 96.4 0.0023 8E-08 58.0 4.4 24 45-68 55-78 (202)
217 3n70_A Transport activator; si 96.4 0.0018 6.1E-08 56.4 3.4 26 43-68 23-48 (145)
218 1m8p_A Sulfate adenylyltransfe 96.4 0.0012 4.1E-08 71.1 2.7 42 42-83 394-439 (573)
219 1in4_A RUVB, holliday junction 96.4 0.0023 7.7E-08 63.6 4.5 29 44-72 51-79 (334)
220 2z4s_A Chromosomal replication 96.4 0.016 5.6E-07 59.9 11.1 36 44-79 130-170 (440)
221 2axn_A 6-phosphofructo-2-kinas 96.3 0.0018 6.3E-08 68.8 3.8 36 42-77 33-73 (520)
222 4fcw_A Chaperone protein CLPB; 96.3 0.0024 8.3E-08 61.5 4.3 24 45-68 48-71 (311)
223 2qp9_X Vacuolar protein sortin 96.3 0.0023 7.7E-08 64.4 4.1 34 44-77 84-117 (355)
224 2yhs_A FTSY, cell division pro 96.3 0.002 6.7E-08 68.5 3.8 33 33-68 285-317 (503)
225 4f4c_A Multidrug resistance pr 96.3 0.0019 6.4E-08 75.9 3.9 37 30-69 433-469 (1321)
226 4b4t_I 26S protease regulatory 96.3 0.0028 9.7E-08 66.1 4.8 38 42-79 214-251 (437)
227 4b4t_H 26S protease regulatory 96.3 0.0024 8.2E-08 67.2 4.3 37 42-78 241-277 (467)
228 1lw7_A Transcriptional regulat 96.3 0.0016 5.4E-08 65.5 2.8 33 34-69 161-195 (365)
229 3g5u_A MCG1178, multidrug resi 96.3 0.0017 5.8E-08 76.0 3.5 50 30-87 405-455 (1284)
230 2dhr_A FTSH; AAA+ protein, hex 96.3 0.0034 1.2E-07 66.5 5.5 35 46-80 66-100 (499)
231 1xx6_A Thymidine kinase; NESG, 96.3 0.0037 1.3E-07 57.9 5.1 27 42-68 6-32 (191)
232 3kta_A Chromosome segregation 96.3 0.0039 1.3E-07 55.5 5.0 33 33-69 19-51 (182)
233 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0024 8.1E-08 58.3 3.5 27 42-68 21-47 (235)
234 3e70_C DPA, signal recognition 96.2 0.0026 8.8E-08 63.8 3.9 27 42-68 127-153 (328)
235 1cr0_A DNA primase/helicase; R 96.2 0.0018 6.2E-08 62.7 2.7 35 31-68 25-59 (296)
236 2f1r_A Molybdopterin-guanine d 96.2 0.0018 6.1E-08 59.0 2.5 25 45-69 3-27 (171)
237 3g5u_A MCG1178, multidrug resi 96.2 0.0025 8.7E-08 74.5 4.2 50 30-87 1048-1098(1284)
238 1n0w_A DNA repair protein RAD5 96.2 0.0034 1.2E-07 58.0 4.2 26 42-67 22-47 (243)
239 1p9r_A General secretion pathw 96.2 0.0035 1.2E-07 65.0 4.7 28 42-69 165-192 (418)
240 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0029 1E-07 67.5 4.2 35 42-81 310-344 (538)
241 3ozx_A RNAse L inhibitor; ATP 96.1 0.0027 9.4E-08 67.8 3.8 35 42-81 292-326 (538)
242 3bk7_A ABC transporter ATP-bin 96.1 0.003 1E-07 68.4 4.2 35 42-81 380-414 (607)
243 1hqc_A RUVB; extended AAA-ATPa 96.1 0.0026 8.9E-08 61.6 3.2 32 44-75 38-69 (324)
244 3uk6_A RUVB-like 2; hexameric 96.1 0.0037 1.3E-07 61.8 4.3 33 44-76 70-104 (368)
245 2gks_A Bifunctional SAT/APS ki 96.1 0.0042 1.4E-07 66.4 5.0 28 42-69 370-397 (546)
246 4edh_A DTMP kinase, thymidylat 96.1 0.0034 1.2E-07 59.0 3.8 28 42-69 4-31 (213)
247 1xjc_A MOBB protein homolog; s 96.1 0.0034 1.2E-07 57.3 3.6 26 43-68 3-28 (169)
248 2qby_A CDC6 homolog 1, cell di 96.1 0.0036 1.2E-07 61.4 4.0 35 42-76 43-83 (386)
249 1ko7_A HPR kinase/phosphatase; 96.1 0.0047 1.6E-07 61.9 4.8 40 43-83 143-182 (314)
250 2v1u_A Cell division control p 96.1 0.0031 1.1E-07 61.9 3.5 27 42-68 42-68 (387)
251 2ewv_A Twitching motility prot 96.0 0.0035 1.2E-07 63.7 3.8 27 42-68 134-160 (372)
252 2i3b_A HCR-ntpase, human cance 96.0 0.0032 1.1E-07 58.1 3.2 24 45-68 2-25 (189)
253 3co5_A Putative two-component 96.0 0.0016 5.3E-08 56.7 1.0 33 44-77 27-59 (143)
254 3cr8_A Sulfate adenylyltranfer 96.0 0.0028 9.7E-08 68.0 3.3 28 42-69 367-394 (552)
255 2zan_A Vacuolar protein sortin 96.0 0.0055 1.9E-07 63.5 5.3 35 43-77 166-201 (444)
256 2qby_B CDC6 homolog 3, cell di 96.0 0.0045 1.6E-07 61.2 4.5 26 43-68 44-69 (384)
257 2iw3_A Elongation factor 3A; a 96.0 0.0023 7.9E-08 72.9 2.6 44 31-82 689-732 (986)
258 3ozx_A RNAse L inhibitor; ATP 96.0 0.0034 1.2E-07 67.1 3.8 39 37-80 18-56 (538)
259 2ce7_A Cell division protein F 96.0 0.0046 1.6E-07 65.2 4.7 36 44-79 49-84 (476)
260 3shw_A Tight junction protein 96.0 0.0051 1.8E-07 64.7 5.0 66 42-139 222-287 (468)
261 1zu4_A FTSY; GTPase, signal re 96.0 0.0039 1.3E-07 62.2 3.8 33 33-68 97-129 (320)
262 1njg_A DNA polymerase III subu 96.0 0.0042 1.4E-07 55.9 3.7 26 44-69 45-70 (250)
263 2b8t_A Thymidine kinase; deoxy 96.0 0.0097 3.3E-07 56.5 6.3 27 42-68 10-36 (223)
264 3jvv_A Twitching mobility prot 95.9 0.0034 1.2E-07 63.7 3.3 27 43-69 122-148 (356)
265 2px0_A Flagellar biosynthesis 95.9 0.0043 1.5E-07 61.1 3.8 27 42-68 103-129 (296)
266 3b85_A Phosphate starvation-in 95.9 0.0029 1E-07 59.2 2.4 33 42-80 20-52 (208)
267 1vma_A Cell division protein F 95.9 0.0046 1.6E-07 61.4 4.0 27 42-68 102-128 (306)
268 3m6a_A ATP-dependent protease 95.9 0.0055 1.9E-07 65.3 4.8 34 43-76 107-140 (543)
269 3tmk_A Thymidylate kinase; pho 95.9 0.0052 1.8E-07 58.1 4.0 29 42-70 3-31 (216)
270 2chg_A Replication factor C sm 95.9 0.0048 1.6E-07 55.0 3.6 25 45-69 39-63 (226)
271 1fnn_A CDC6P, cell division co 95.9 0.0054 1.9E-07 60.5 4.3 25 45-69 45-69 (389)
272 3v9p_A DTMP kinase, thymidylat 95.9 0.0037 1.3E-07 59.6 2.9 28 42-69 23-50 (227)
273 1np6_A Molybdopterin-guanine d 95.9 0.0052 1.8E-07 56.1 3.8 25 44-68 6-30 (174)
274 3pxg_A Negative regulator of g 95.8 0.0049 1.7E-07 64.3 4.0 26 43-68 200-225 (468)
275 3u61_B DNA polymerase accessor 95.8 0.0056 1.9E-07 59.7 4.2 36 43-78 47-82 (324)
276 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0029 9.9E-08 66.3 2.2 33 33-68 130-162 (460)
277 1pzn_A RAD51, DNA repair and r 95.8 0.0056 1.9E-07 61.6 4.2 27 42-68 129-155 (349)
278 2oap_1 GSPE-2, type II secreti 95.8 0.0022 7.5E-08 68.1 1.1 33 34-69 253-285 (511)
279 2bjv_A PSP operon transcriptio 95.8 0.0062 2.1E-07 57.7 4.1 26 44-69 29-54 (265)
280 1ypw_A Transitional endoplasmi 95.8 0.005 1.7E-07 68.7 4.0 38 42-79 236-273 (806)
281 2qm8_A GTPase/ATPase; G protei 95.8 0.0041 1.4E-07 62.3 2.9 35 31-68 45-79 (337)
282 3p32_A Probable GTPase RV1496/ 95.8 0.024 8.1E-07 56.8 8.5 38 41-78 76-118 (355)
283 1nij_A Hypothetical protein YJ 95.8 0.0043 1.5E-07 61.4 3.0 44 43-86 3-50 (318)
284 2yv5_A YJEQ protein; hydrolase 95.7 0.0067 2.3E-07 59.7 4.4 39 43-87 164-206 (302)
285 1bif_A 6-phosphofructo-2-kinas 95.7 0.0027 9.3E-08 66.2 1.6 31 42-72 37-67 (469)
286 3sop_A Neuronal-specific septi 95.7 0.005 1.7E-07 59.9 3.4 24 46-69 4-27 (270)
287 4tmk_A Protein (thymidylate ki 95.7 0.0057 1.9E-07 57.5 3.6 27 43-69 2-28 (213)
288 3te6_A Regulatory protein SIR3 95.7 0.006 2.1E-07 61.0 3.9 28 42-69 43-70 (318)
289 3ld9_A DTMP kinase, thymidylat 95.7 0.0066 2.3E-07 57.7 3.9 28 42-69 19-46 (223)
290 2dr3_A UPF0273 protein PH0284; 95.7 0.0056 1.9E-07 56.6 3.3 27 42-68 21-47 (247)
291 3hu3_A Transitional endoplasmi 95.7 0.008 2.7E-07 63.4 4.8 37 42-78 236-272 (489)
292 3pvs_A Replication-associated 95.6 0.0074 2.5E-07 62.9 4.5 33 45-77 51-83 (447)
293 2r44_A Uncharacterized protein 95.6 0.0059 2E-07 59.8 3.5 31 44-74 46-76 (331)
294 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0061 2.1E-07 65.0 3.8 34 31-68 38-71 (538)
295 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0042 1.4E-07 63.3 2.3 28 45-72 25-52 (359)
296 2qag_B Septin-6, protein NEDD5 95.6 0.0035 1.2E-07 65.3 1.6 34 31-67 30-65 (427)
297 3ux8_A Excinuclease ABC, A sub 95.6 0.0048 1.6E-07 67.2 2.8 32 30-64 337-368 (670)
298 2orw_A Thymidine kinase; TMTK, 95.5 0.0075 2.6E-07 55.1 3.6 26 43-68 2-27 (184)
299 2orv_A Thymidine kinase; TP4A 95.5 0.011 3.7E-07 56.9 4.7 28 41-68 16-43 (234)
300 3j16_B RLI1P; ribosome recycli 95.5 0.0093 3.2E-07 64.6 4.7 37 33-69 365-403 (608)
301 1u0l_A Probable GTPase ENGC; p 95.5 0.0074 2.5E-07 59.3 3.6 34 43-81 168-201 (301)
302 3kl4_A SRP54, signal recogniti 95.5 0.009 3.1E-07 62.3 4.3 36 42-77 95-135 (433)
303 1pui_A ENGB, probable GTP-bind 95.5 0.0028 9.5E-08 57.2 0.4 26 42-67 24-49 (210)
304 2j9r_A Thymidine kinase; TK1, 95.5 0.017 5.7E-07 54.8 5.8 27 42-68 26-52 (214)
305 3pxi_A Negative regulator of g 95.4 0.0079 2.7E-07 66.2 4.0 40 43-82 200-249 (758)
306 2iw3_A Elongation factor 3A; a 95.4 0.008 2.8E-07 68.5 4.1 34 30-66 450-483 (986)
307 1nlf_A Regulatory protein REPA 95.4 0.0076 2.6E-07 57.9 3.3 27 42-68 28-54 (279)
308 3dm5_A SRP54, signal recogniti 95.4 0.012 4.2E-07 61.4 5.0 35 43-77 99-138 (443)
309 3e2i_A Thymidine kinase; Zn-bi 95.3 0.014 4.8E-07 55.6 4.9 27 42-68 26-52 (219)
310 1dek_A Deoxynucleoside monopho 95.3 0.0095 3.2E-07 57.3 3.6 32 45-76 2-33 (241)
311 1tf7_A KAIC; homohexamer, hexa 95.3 0.0056 1.9E-07 64.7 2.1 32 30-64 27-59 (525)
312 4aby_A DNA repair protein RECN 95.3 0.0068 2.3E-07 61.3 2.7 36 31-70 51-86 (415)
313 2dpy_A FLII, flagellum-specifi 95.3 0.011 3.6E-07 61.6 4.1 33 33-69 150-182 (438)
314 1tq4_A IIGP1, interferon-induc 95.3 0.0038 1.3E-07 64.7 0.7 24 45-68 70-93 (413)
315 3ux8_A Excinuclease ABC, A sub 95.2 0.0087 3E-07 65.1 3.5 30 29-61 32-61 (670)
316 2wsm_A Hydrogenase expression/ 95.2 0.014 4.7E-07 53.2 4.3 26 43-68 29-54 (221)
317 1w4r_A Thymidine kinase; type 95.2 0.015 5.1E-07 54.4 4.6 26 42-67 18-43 (195)
318 3cf2_A TER ATPase, transitiona 95.2 0.011 3.7E-07 66.2 4.2 39 42-80 236-274 (806)
319 2wji_A Ferrous iron transport 95.2 0.011 3.7E-07 51.6 3.4 24 44-67 3-26 (165)
320 1r6b_X CLPA protein; AAA+, N-t 95.2 0.013 4.6E-07 64.2 4.8 33 46-78 490-522 (758)
321 3bk7_A ABC transporter ATP-bin 95.1 0.0093 3.2E-07 64.6 3.2 34 31-68 108-141 (607)
322 2qgz_A Helicase loader, putati 95.1 0.012 4.1E-07 58.0 3.8 26 44-69 152-177 (308)
323 2p67_A LAO/AO transport system 95.1 0.012 4E-07 58.8 3.7 41 34-77 49-94 (341)
324 1knx_A Probable HPR(Ser) kinas 95.1 0.011 3.7E-07 59.2 3.3 39 43-82 146-184 (312)
325 2wjg_A FEOB, ferrous iron tran 95.1 0.013 4.6E-07 51.5 3.6 25 43-67 6-30 (188)
326 1qvr_A CLPB protein; coiled co 95.0 0.028 9.7E-07 62.8 6.9 38 43-80 190-237 (854)
327 1v5w_A DMC1, meiotic recombina 95.0 0.018 6.2E-07 57.6 4.8 27 41-67 119-145 (343)
328 3j16_B RLI1P; ribosome recycli 95.0 0.013 4.6E-07 63.4 4.1 34 42-80 101-134 (608)
329 3hr8_A Protein RECA; alpha and 95.0 0.015 5.2E-07 59.0 4.3 35 42-76 59-96 (356)
330 2z43_A DNA repair and recombin 95.0 0.016 5.3E-07 57.4 4.2 27 42-68 105-131 (324)
331 2v3c_C SRP54, signal recogniti 95.0 0.0081 2.8E-07 62.4 2.2 35 43-77 98-137 (432)
332 2fna_A Conserved hypothetical 94.9 0.016 5.5E-07 56.0 4.0 26 45-70 31-56 (357)
333 1t9h_A YLOQ, probable GTPase E 94.9 0.0064 2.2E-07 60.5 1.1 35 42-81 171-205 (307)
334 2hf9_A Probable hydrogenase ni 94.9 0.018 6.1E-07 52.7 3.9 26 43-68 37-62 (226)
335 1yrb_A ATP(GTP)binding protein 94.9 0.021 7.2E-07 53.5 4.5 36 42-77 12-51 (262)
336 2qen_A Walker-type ATPase; unk 94.8 0.015 5.3E-07 56.1 3.6 30 45-74 32-61 (350)
337 1sxj_E Activator 1 40 kDa subu 94.8 0.015 5E-07 57.1 3.4 22 47-68 39-60 (354)
338 1j8m_F SRP54, signal recogniti 94.8 0.015 5E-07 57.4 3.4 25 44-68 98-122 (297)
339 1oix_A RAS-related protein RAB 94.8 0.015 5.3E-07 52.2 3.2 24 45-68 30-53 (191)
340 1ypw_A Transitional endoplasmi 94.8 0.0077 2.6E-07 67.2 1.4 36 42-77 509-544 (806)
341 1f2t_A RAD50 ABC-ATPase; DNA d 94.7 0.026 9E-07 49.6 4.6 25 44-68 23-47 (149)
342 2obl_A ESCN; ATPase, hydrolase 94.7 0.019 6.6E-07 57.9 4.1 32 34-69 65-96 (347)
343 1ls1_A Signal recognition part 94.7 0.018 6E-07 56.6 3.7 26 43-68 97-122 (295)
344 2f9l_A RAB11B, member RAS onco 94.7 0.017 5.8E-07 51.9 3.3 23 45-67 6-28 (199)
345 1qhl_A Protein (cell division 94.7 0.0038 1.3E-07 59.5 -1.1 37 45-86 28-65 (227)
346 2gf0_A GTP-binding protein DI- 94.7 0.02 7E-07 50.6 3.7 27 40-66 4-30 (199)
347 2www_A Methylmalonic aciduria 94.7 0.025 8.5E-07 56.8 4.8 25 44-68 74-98 (349)
348 1jr3_A DNA polymerase III subu 94.7 0.019 6.6E-07 56.4 3.9 27 44-70 38-64 (373)
349 1sxj_C Activator 1 40 kDa subu 94.7 0.014 4.9E-07 57.5 2.9 23 47-69 49-71 (340)
350 2lkc_A Translation initiation 94.6 0.024 8.3E-07 49.1 4.0 25 42-66 6-30 (178)
351 2dyk_A GTP-binding protein; GT 94.6 0.021 7.2E-07 48.5 3.5 24 45-68 2-25 (161)
352 2zts_A Putative uncharacterize 94.6 0.021 7.2E-07 52.6 3.7 26 42-67 28-53 (251)
353 2ce2_X GTPase HRAS; signaling 94.5 0.021 7.2E-07 48.3 3.3 23 45-67 4-26 (166)
354 1g8p_A Magnesium-chelatase 38 94.5 0.013 4.4E-07 57.2 2.2 25 46-70 47-71 (350)
355 3qf7_A RAD50; ABC-ATPase, ATPa 94.5 0.022 7.6E-07 57.5 4.0 32 33-68 16-47 (365)
356 2ged_A SR-beta, signal recogni 94.5 0.026 8.8E-07 50.0 3.9 27 42-68 46-72 (193)
357 3szr_A Interferon-induced GTP- 94.5 0.015 5E-07 62.9 2.7 38 45-86 46-84 (608)
358 1u8z_A RAS-related protein RAL 94.5 0.025 8.6E-07 48.1 3.6 25 43-67 3-27 (168)
359 1kao_A RAP2A; GTP-binding prot 94.4 0.024 8.3E-07 48.1 3.5 24 44-67 3-26 (167)
360 1sxj_D Activator 1 41 kDa subu 94.4 0.02 7E-07 55.7 3.3 25 45-69 59-83 (353)
361 1iqp_A RFCS; clamp loader, ext 94.4 0.021 7.1E-07 54.9 3.2 25 45-69 47-71 (327)
362 2j37_W Signal recognition part 94.3 0.029 9.8E-07 59.5 4.5 36 42-77 99-139 (504)
363 1ojl_A Transcriptional regulat 94.3 0.022 7.6E-07 55.9 3.4 26 43-68 24-49 (304)
364 3pxi_A Negative regulator of g 94.3 0.031 1.1E-06 61.5 4.8 31 46-76 523-556 (758)
365 2fn4_A P23, RAS-related protei 94.3 0.027 9.3E-07 48.7 3.5 25 43-67 8-32 (181)
366 4hlc_A DTMP kinase, thymidylat 94.3 0.026 8.8E-07 52.5 3.6 26 44-69 2-27 (205)
367 2gj8_A MNME, tRNA modification 94.3 0.024 8.3E-07 50.0 3.2 25 43-67 3-27 (172)
368 2zr9_A Protein RECA, recombina 94.3 0.028 9.7E-07 56.6 4.1 27 42-68 59-85 (349)
369 1r6b_X CLPA protein; AAA+, N-t 94.3 0.039 1.3E-06 60.5 5.5 36 43-78 206-251 (758)
370 1nrj_B SR-beta, signal recogni 94.2 0.031 1.1E-06 50.6 3.9 26 43-68 11-36 (218)
371 1sxj_B Activator 1 37 kDa subu 94.2 0.024 8.2E-07 54.3 3.3 24 46-69 44-67 (323)
372 2zej_A Dardarin, leucine-rich 94.2 0.02 6.9E-07 50.8 2.6 23 45-67 3-25 (184)
373 1z2a_A RAS-related protein RAB 94.2 0.028 9.5E-07 48.0 3.4 24 44-67 5-28 (168)
374 2rcn_A Probable GTPase ENGC; Y 94.2 0.027 9.1E-07 57.3 3.6 27 43-69 214-240 (358)
375 2ygr_A Uvrabc system protein A 94.1 0.022 7.6E-07 64.9 3.3 34 27-63 32-65 (993)
376 2r6f_A Excinuclease ABC subuni 94.1 0.022 7.7E-07 64.7 3.3 34 27-63 30-63 (972)
377 1qvr_A CLPB protein; coiled co 94.1 0.032 1.1E-06 62.4 4.4 33 45-77 589-624 (854)
378 2vf7_A UVRA2, excinuclease ABC 94.1 0.025 8.7E-07 63.5 3.5 34 27-63 22-55 (842)
379 3pih_A Uvrabc system protein A 94.0 0.018 6.3E-07 65.2 2.4 33 28-63 11-43 (916)
380 1m2o_B GTP-binding protein SAR 94.0 0.03 1E-06 50.1 3.3 25 43-67 22-46 (190)
381 3cf2_A TER ATPase, transitiona 94.0 0.028 9.6E-07 62.9 3.7 37 43-79 510-546 (806)
382 2xxa_A Signal recognition part 94.0 0.034 1.2E-06 57.8 4.1 36 42-77 98-139 (433)
383 2nzj_A GTP-binding protein REM 94.0 0.032 1.1E-06 48.0 3.3 24 43-66 3-26 (175)
384 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.027 9.3E-07 48.7 2.8 24 44-67 7-30 (177)
385 1c1y_A RAS-related protein RAP 93.9 0.035 1.2E-06 47.3 3.5 24 44-67 3-26 (167)
386 2chq_A Replication factor C sm 93.9 0.033 1.1E-06 53.2 3.7 23 46-68 40-62 (319)
387 1svi_A GTP-binding protein YSX 93.9 0.036 1.2E-06 48.9 3.7 25 43-67 22-46 (195)
388 2vhj_A Ntpase P4, P4; non- hyd 93.9 0.019 6.4E-07 57.9 1.9 27 43-69 122-148 (331)
389 1u94_A RECA protein, recombina 93.9 0.039 1.3E-06 55.8 4.3 27 42-68 61-87 (356)
390 1upt_A ARL1, ADP-ribosylation 93.9 0.041 1.4E-06 47.2 3.9 24 43-66 6-29 (171)
391 3thx_A DNA mismatch repair pro 93.9 0.032 1.1E-06 63.3 4.0 31 33-66 654-684 (934)
392 3pqc_A Probable GTP-binding pr 93.9 0.037 1.3E-06 48.5 3.6 24 44-67 23-46 (195)
393 2hxs_A RAB-26, RAS-related pro 93.9 0.038 1.3E-06 47.8 3.7 25 43-67 5-29 (178)
394 1w5s_A Origin recognition comp 93.8 0.032 1.1E-06 55.5 3.5 26 43-68 49-76 (412)
395 1ky3_A GTP-binding protein YPT 93.8 0.035 1.2E-06 48.0 3.4 24 44-67 8-31 (182)
396 3k1j_A LON protease, ATP-depen 93.8 0.018 6.1E-07 61.9 1.7 33 34-69 53-85 (604)
397 3thx_B DNA mismatch repair pro 93.8 0.029 1E-06 63.6 3.4 31 33-66 665-695 (918)
398 1ek0_A Protein (GTP-binding pr 93.7 0.037 1.3E-06 47.2 3.3 23 45-67 4-26 (170)
399 1z0j_A RAB-22, RAS-related pro 93.7 0.037 1.3E-06 47.3 3.2 24 45-68 7-30 (170)
400 3con_A GTPase NRAS; structural 93.7 0.033 1.1E-06 49.1 3.0 24 44-67 21-44 (190)
401 3lxx_A GTPase IMAP family memb 93.7 0.034 1.2E-06 51.8 3.2 25 43-67 28-52 (239)
402 2o5v_A DNA replication and rep 93.7 0.043 1.5E-06 55.6 4.2 35 28-66 14-48 (359)
403 3lda_A DNA repair protein RAD5 93.7 0.031 1.1E-06 57.5 3.2 27 41-67 175-201 (400)
404 1g16_A RAS-related protein SEC 93.7 0.035 1.2E-06 47.5 3.0 23 45-67 4-26 (170)
405 3qks_A DNA double-strand break 93.7 0.05 1.7E-06 50.2 4.2 27 44-70 23-49 (203)
406 2erx_A GTP-binding protein DI- 93.7 0.036 1.2E-06 47.3 3.1 22 45-66 4-25 (172)
407 3bc1_A RAS-related protein RAB 93.7 0.038 1.3E-06 48.2 3.3 23 45-67 12-34 (195)
408 2a9k_A RAS-related protein RAL 93.6 0.041 1.4E-06 47.8 3.4 25 43-67 17-41 (187)
409 3bh0_A DNAB-like replicative h 93.6 0.045 1.5E-06 53.9 4.0 28 41-68 65-92 (315)
410 3q85_A GTP-binding protein REM 93.6 0.038 1.3E-06 47.4 3.1 21 46-66 4-24 (169)
411 2ffh_A Protein (FFH); SRP54, s 93.6 0.039 1.3E-06 57.3 3.7 26 43-68 97-122 (425)
412 3clv_A RAB5 protein, putative; 93.5 0.054 1.8E-06 47.4 4.0 24 44-67 7-30 (208)
413 3kkq_A RAS-related protein M-R 93.5 0.046 1.6E-06 47.8 3.6 24 44-67 18-41 (183)
414 1wb9_A DNA mismatch repair pro 93.5 0.051 1.8E-06 60.7 4.7 45 19-67 585-630 (800)
415 1r2q_A RAS-related protein RAB 93.5 0.033 1.1E-06 47.5 2.5 24 44-67 6-29 (170)
416 1z08_A RAS-related protein RAB 93.5 0.043 1.5E-06 47.0 3.2 23 45-67 7-29 (170)
417 3ch4_B Pmkase, phosphomevalona 93.4 0.055 1.9E-06 50.8 4.1 27 43-69 10-36 (202)
418 1e69_A Chromosome segregation 93.4 0.037 1.3E-06 54.6 3.1 32 34-69 18-49 (322)
419 3ihw_A Centg3; RAS, centaurin, 93.4 0.051 1.7E-06 48.4 3.7 25 43-67 19-43 (184)
420 2r6a_A DNAB helicase, replicat 93.4 0.047 1.6E-06 56.5 3.9 28 41-68 200-227 (454)
421 3nbx_X ATPase RAVA; AAA+ ATPas 93.4 0.041 1.4E-06 58.3 3.5 26 44-69 41-66 (500)
422 1mh1_A RAC1; GTP-binding, GTPa 93.3 0.046 1.6E-06 47.5 3.2 24 43-66 4-27 (186)
423 1r8s_A ADP-ribosylation factor 93.3 0.051 1.7E-06 46.4 3.4 22 46-67 2-23 (164)
424 4dsu_A GTPase KRAS, isoform 2B 93.3 0.047 1.6E-06 47.6 3.2 24 44-67 4-27 (189)
425 3llm_A ATP-dependent RNA helic 93.3 0.049 1.7E-06 50.8 3.5 22 43-64 75-96 (235)
426 3q72_A GTP-binding protein RAD 93.2 0.041 1.4E-06 47.1 2.7 22 45-66 3-24 (166)
427 2vf7_A UVRA2, excinuclease ABC 93.2 0.022 7.4E-07 64.1 1.1 33 31-66 513-546 (842)
428 2y8e_A RAB-protein 6, GH09086P 93.2 0.044 1.5E-06 47.2 2.9 23 45-67 15-37 (179)
429 2iwr_A Centaurin gamma 1; ANK 93.2 0.053 1.8E-06 47.1 3.3 25 43-67 6-30 (178)
430 3tw8_B RAS-related protein RAB 93.2 0.046 1.6E-06 47.2 2.9 22 45-66 10-31 (181)
431 3bwd_D RAC-like GTP-binding pr 93.2 0.063 2.2E-06 46.6 3.8 25 43-67 7-31 (182)
432 2ygr_A Uvrabc system protein A 93.1 0.036 1.2E-06 63.2 2.8 31 31-64 658-688 (993)
433 4ag6_A VIRB4 ATPase, type IV s 93.1 0.056 1.9E-06 54.4 3.9 40 43-82 34-76 (392)
434 2bov_A RAla, RAS-related prote 93.1 0.059 2E-06 47.9 3.6 24 44-67 14-37 (206)
435 1z06_A RAS-related protein RAB 93.1 0.054 1.9E-06 47.8 3.4 24 43-66 19-42 (189)
436 1moz_A ARL1, ADP-ribosylation 93.1 0.039 1.3E-06 48.1 2.4 23 43-65 17-39 (183)
437 1xp8_A RECA protein, recombina 93.1 0.061 2.1E-06 54.6 4.1 27 42-68 72-98 (366)
438 4bas_A ADP-ribosylation factor 93.1 0.049 1.7E-06 48.1 3.0 25 42-66 15-39 (199)
439 2i1q_A DNA repair and recombin 93.1 0.051 1.7E-06 53.2 3.4 26 42-67 96-121 (322)
440 2fh5_B SR-beta, signal recogni 93.0 0.059 2E-06 48.6 3.6 25 43-67 6-30 (214)
441 1a5t_A Delta prime, HOLB; zinc 93.0 0.07 2.4E-06 52.7 4.4 28 44-71 24-51 (334)
442 1udx_A The GTP-binding protein 93.0 0.042 1.4E-06 56.8 2.9 33 33-68 149-181 (416)
443 2r2a_A Uncharacterized protein 93.0 0.068 2.3E-06 49.6 4.0 25 43-67 4-28 (199)
444 1z0f_A RAB14, member RAS oncog 93.0 0.057 1.9E-06 46.5 3.3 24 44-67 15-38 (179)
445 1p6x_A Thymidine kinase; P-loo 93.0 0.034 1.2E-06 56.0 2.1 27 43-69 6-32 (334)
446 1w1w_A Structural maintenance 93.0 0.079 2.7E-06 54.2 4.8 28 42-69 24-51 (430)
447 3t5g_A GTP-binding protein RHE 93.0 0.043 1.5E-06 47.9 2.4 23 44-66 6-28 (181)
448 2oil_A CATX-8, RAS-related pro 92.9 0.057 2E-06 47.8 3.3 23 45-67 26-48 (193)
449 3k53_A Ferrous iron transport 92.9 0.058 2E-06 51.5 3.5 25 43-67 2-26 (271)
450 2cxx_A Probable GTP-binding pr 92.9 0.05 1.7E-06 47.6 2.8 21 46-66 3-23 (190)
451 1fzq_A ADP-ribosylation factor 92.9 0.062 2.1E-06 47.5 3.4 25 43-67 15-39 (181)
452 3hjn_A DTMP kinase, thymidylat 92.9 0.063 2.2E-06 49.4 3.5 24 46-69 2-25 (197)
453 2p5s_A RAS and EF-hand domain 92.9 0.067 2.3E-06 47.9 3.6 26 42-67 26-51 (199)
454 2efe_B Small GTP-binding prote 92.8 0.055 1.9E-06 46.9 3.0 23 45-67 13-35 (181)
455 1u0j_A DNA replication protein 92.8 0.075 2.6E-06 51.9 4.2 27 43-69 103-129 (267)
456 1ksh_A ARF-like protein 2; sma 92.8 0.065 2.2E-06 47.0 3.4 24 43-66 17-40 (186)
457 2bme_A RAB4A, RAS-related prot 92.8 0.057 1.9E-06 47.2 3.0 23 45-67 11-33 (186)
458 2h17_A ADP-ribosylation factor 92.8 0.053 1.8E-06 47.7 2.8 25 43-67 20-44 (181)
459 3qkt_A DNA double-strand break 92.8 0.077 2.6E-06 52.7 4.3 26 43-68 22-47 (339)
460 1m7b_A RND3/RHOE small GTP-bin 92.8 0.06 2E-06 47.5 3.2 24 44-67 7-30 (184)
461 2r6f_A Excinuclease ABC subuni 92.8 0.032 1.1E-06 63.4 1.7 31 31-64 640-670 (972)
462 2qnr_A Septin-2, protein NEDD5 92.8 0.045 1.5E-06 53.7 2.5 21 47-67 21-41 (301)
463 3ice_A Transcription terminati 92.7 0.061 2.1E-06 55.7 3.5 32 34-68 167-198 (422)
464 1vg8_A RAS-related protein RAB 92.7 0.066 2.2E-06 47.7 3.4 24 44-67 8-31 (207)
465 2atv_A RERG, RAS-like estrogen 92.7 0.075 2.6E-06 47.3 3.7 25 43-67 27-51 (196)
466 2g6b_A RAS-related protein RAB 92.7 0.066 2.3E-06 46.3 3.3 24 44-67 10-33 (180)
467 3tkl_A RAS-related protein RAB 92.7 0.065 2.2E-06 47.2 3.3 23 45-67 17-39 (196)
468 1zj6_A ADP-ribosylation factor 92.7 0.072 2.5E-06 46.9 3.6 24 43-66 15-38 (187)
469 2xtp_A GTPase IMAP family memb 92.6 0.065 2.2E-06 50.4 3.4 25 43-67 21-45 (260)
470 1zd9_A ADP-ribosylation factor 92.6 0.063 2.2E-06 47.6 3.1 24 44-67 22-45 (188)
471 4dhe_A Probable GTP-binding pr 92.6 0.056 1.9E-06 49.0 2.8 25 43-67 28-52 (223)
472 3oes_A GTPase rhebl1; small GT 92.6 0.065 2.2E-06 48.0 3.2 25 43-67 23-47 (201)
473 3c5c_A RAS-like protein 12; GD 92.6 0.07 2.4E-06 47.4 3.4 24 44-67 21-44 (187)
474 3io5_A Recombination and repai 92.6 0.077 2.6E-06 53.5 4.0 35 42-77 27-66 (333)
475 2j1l_A RHO-related GTP-binding 92.5 0.064 2.2E-06 48.9 3.1 24 43-66 33-56 (214)
476 3t1o_A Gliding protein MGLA; G 92.5 0.074 2.5E-06 46.6 3.4 25 45-69 15-39 (198)
477 2fv8_A H6, RHO-related GTP-bin 92.5 0.06 2E-06 48.6 2.8 25 43-67 24-48 (207)
478 1f6b_A SAR1; gtpases, N-termin 92.5 0.065 2.2E-06 48.3 3.0 24 43-66 24-47 (198)
479 3pih_A Uvrabc system protein A 92.5 0.065 2.2E-06 60.8 3.6 28 31-61 600-627 (916)
480 2qu8_A Putative nucleolar GTP- 92.4 0.081 2.8E-06 48.7 3.7 25 42-66 27-51 (228)
481 1ewq_A DNA mismatch repair pro 92.4 0.074 2.5E-06 59.2 3.9 24 44-67 576-599 (765)
482 2q6t_A DNAB replication FORK h 92.4 0.078 2.7E-06 54.7 3.8 28 41-68 197-224 (444)
483 1ega_A Protein (GTP-binding pr 92.3 0.06 2.1E-06 52.7 2.8 26 42-67 6-31 (301)
484 2gf9_A RAS-related protein RAB 92.3 0.077 2.6E-06 46.9 3.3 23 45-67 23-45 (189)
485 2b6h_A ADP-ribosylation factor 92.3 0.08 2.7E-06 47.3 3.4 24 43-66 28-51 (192)
486 1of1_A Thymidine kinase; trans 92.2 0.051 1.7E-06 55.7 2.2 28 42-69 47-74 (376)
487 1x3s_A RAS-related protein RAB 92.2 0.082 2.8E-06 46.4 3.3 23 45-67 16-38 (195)
488 2fg5_A RAB-22B, RAS-related pr 92.2 0.075 2.6E-06 47.3 3.0 23 45-67 24-46 (192)
489 1tf7_A KAIC; homohexamer, hexa 92.2 0.076 2.6E-06 56.0 3.5 27 42-68 279-305 (525)
490 1z6t_A APAF-1, apoptotic prote 92.1 0.083 2.8E-06 55.6 3.8 24 43-66 146-169 (591)
491 3lxw_A GTPase IMAP family memb 92.1 0.079 2.7E-06 50.1 3.2 26 43-68 20-45 (247)
492 2a5j_A RAS-related protein RAB 92.1 0.085 2.9E-06 46.7 3.2 23 45-67 22-44 (191)
493 3dz8_A RAS-related protein RAB 92.1 0.084 2.9E-06 46.8 3.2 24 45-68 24-47 (191)
494 2qag_C Septin-7; cell cycle, c 92.0 0.061 2.1E-06 55.6 2.6 22 47-68 34-55 (418)
495 1zbd_A Rabphilin-3A; G protein 92.0 0.082 2.8E-06 47.1 3.1 23 45-67 9-31 (203)
496 2r8r_A Sensor protein; KDPD, P 92.0 0.1 3.6E-06 49.8 3.9 32 46-77 8-44 (228)
497 2bcg_Y Protein YP2, GTP-bindin 92.0 0.081 2.8E-06 47.4 3.0 23 45-67 9-31 (206)
498 2o8b_B DNA mismatch repair pro 92.0 0.093 3.2E-06 60.2 4.2 34 32-65 773-810 (1022)
499 3cph_A RAS-related protein SEC 92.0 0.1 3.4E-06 46.7 3.6 24 44-67 20-43 (213)
500 2h57_A ADP-ribosylation factor 91.9 0.07 2.4E-06 47.2 2.5 25 43-67 20-44 (190)
No 1
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=100.00 E-value=1.3e-79 Score=617.70 Aligned_cols=302 Identities=36% Similarity=0.573 Sum_probs=264.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDA 122 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a 122 (455)
++++|+|+||||||||+||..||++++++|||+||+|||++++|||+||+++|+.++||||+|+++|.+.||+++|+++|
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCC-CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCcc-ccccCC
Q 012837 123 RHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPK-ASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAA 200 (455)
Q Consensus 123 ~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~-~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~-A~~i~~ 200 (455)
.+.|++|.++|++||||||||+|++||++|+...|. .++++|+.++..++. .++ +.++..|...||. |++|||
T Consensus 82 ~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~----~g~-~~L~~~L~~~DP~~A~~i~p 156 (322)
T 3exa_A 82 TPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNS----YGV-QALHDKLSKIDPKAAAAIHP 156 (322)
T ss_dssp HHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHH----SCH-HHHHHHHHTTCHHHHTTSCT
T ss_pred HHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHh----cCH-HHHHHHHHhhCHHHHhhcCc
Confidence 999999999999999999999999999999977776 577888887666553 344 4567778899995 889999
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHH
Q 012837 201 NDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280 (455)
Q Consensus 201 nd~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~rI~ 280 (455)
||.+||+|||||+..||+|+|+|+. ++ +...++|++++|+|++||++||+||+
T Consensus 157 nd~~Ri~RALEV~~~TG~~~S~~~~------~~---------------------~~~~~~~~~~~i~L~~~R~~L~~RI~ 209 (322)
T 3exa_A 157 NNYRRVIRALEIIKLTGKTVTEQAR------HE---------------------EETPSPYNLVMIGLTMERDVLYDRIN 209 (322)
T ss_dssp TCHHHHHHHHHHHHHTC-----------------------------------------CCSEEEEEEEECCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHhh------hc---------------------cCCCCCCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999842 11 11235799999999999999999999
Q ss_pred HHHHHhccCCCChHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 012837 281 LRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLT 360 (455)
Q Consensus 281 ~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~~~~~~l~~i~~~TR~yAKRQ~T 360 (455)
+||++||+ +||++||++|++.| .+ ..+++|||||||+++||. |+++++++ ++.++++||||||||+|
T Consensus 210 ~Rvd~Ml~--~Gl~eEv~~L~~~~-~~-~~~a~~aIGYkE~~~yL~------G~~sl~ea---ie~i~~~TR~yAKRQ~T 276 (322)
T 3exa_A 210 RRVDQMVE--EGLIDEAKKLYDRG-IR-DCQSVQAIGYKEMYDYLD------GNVTLEEA---IDTLKRNSRRYAKRQLT 276 (322)
T ss_dssp HHHHHHHH--HTHHHHHHHHHHTT-CC-SSTGGGSTTTHHHHHHHH------TSSCHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCHHHHHHHHHhcC-CC-cCccceeeeHHHHHHHHC------CCCCHHHH---HHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999988 54 458999999999999997 99998875 89999999999999999
Q ss_pred HhcCCCCceEecCCC-cHHHHHHHHHHHhh
Q 012837 361 WFRNERIYHWLNAAR-PLENVLNYIITAYH 389 (455)
Q Consensus 361 WfR~~~~~~w~d~~~-~~~~i~~~i~~~~~ 389 (455)
|||+++.++|+|+++ ..+++++.|.+.+.
T Consensus 277 WfR~~~~~~w~~~~~~~~~~i~~~i~~~~~ 306 (322)
T 3exa_A 277 WFRNKANVTWFDMTDVDFDKKIMEIHNFIA 306 (322)
T ss_dssp HHHTSTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HhcCCCCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999865 56677777777653
No 2
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=100.00 E-value=6.2e-79 Score=611.79 Aligned_cols=299 Identities=34% Similarity=0.565 Sum_probs=268.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFED 121 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~ 121 (455)
..+++|+|+||||||||+||..||++++++|||+||+|||++++|+|+||+++|+.++||||+|.++|.+.||+++|+++
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~ 87 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD 87 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCcc-ccccCC
Q 012837 122 ARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAA 200 (455)
Q Consensus 122 a~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~-A~~i~~ 200 (455)
|.+.|++|+++|++||||||||+|++||++|++++|..++++|+.++.++... +|+ .++..|...||. |++|||
T Consensus 88 a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~----g~~-~l~~~L~~~DP~~A~ri~p 162 (316)
T 3foz_A 88 ALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQ----GWE-SLHRQLQEVDPVAAARIHP 162 (316)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHH----HHH-HHHHHHHHHCHHHHHHSCT
T ss_pred HHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhc----CHH-HHHHHHHHhCHHHHhhCCC
Confidence 99999999999999999999999999999999999999999998887776643 444 456667778995 889999
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeC-CHHHHHHHH
Q 012837 201 NDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSS-HRLDLYRSI 279 (455)
Q Consensus 201 nd~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~-~Re~L~~rI 279 (455)
||.+|++|||||+..||+|+|+++. + ....++|++++|+|++ ||++||+||
T Consensus 163 nd~~Ri~RALEV~~~TG~~~S~~~~-------~---------------------~~~~~~~~~~~i~L~~~~R~~L~~RI 214 (316)
T 3foz_A 163 NDPQRLSRALEVFFISGKTLTELTQ-------T---------------------SGDALPYQVHQFAIAPASRELLHQRI 214 (316)
T ss_dssp TCHHHHHHHHHHHHHHSSCHHHHHT-------S---------------------CCCCCSSEEEEEEEECSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHhh-------c---------------------cCCCCCCceEEEEecCCCHHHHHHHH
Confidence 9999999999999999999999842 1 0123579999999999 999999999
Q ss_pred HHHHHHhccCCCChHHHHHHHHHcC-CCCCCccccccccHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 012837 280 DLRCEDMLPGSDGILSEAAWLLDEG-LLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQ 358 (455)
Q Consensus 280 ~~Rvd~Ml~~~~GLl~Ev~~L~~~g-~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~~~~~~l~~i~~~TR~yAKRQ 358 (455)
++||+.|++ +||++||++|++.| +.++ .+++|+|||||+++||. |+++++++ ++.++++||||||||
T Consensus 215 ~~Rvd~Ml~--~Gl~eEv~~L~~~~~~~~~-~~~~~aIGYkE~~~yL~------G~~s~~ea---i~~~~~~TR~yAKRQ 282 (316)
T 3foz_A 215 EQRFHQMLA--SGFEAEVRALFARGDLHTD-LPSIRCVGYRQMWSYLE------GEISYDEM---VYRGVCATRQLAKRQ 282 (316)
T ss_dssp HHHHHHHHH--TTHHHHHHHHHHHSCCCTT-STTTTSTTHHHHHHHHH------TSSCHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--CCHHHHHHHHHHccCCCcc-CccceeeehhhHHHHhc------CCCCHHHH---HHHHHHHHHHHHHHH
Confidence 999999999 99999999999987 4444 58999999999999997 99998875 899999999999999
Q ss_pred HHHhcCCCCceEecCCCcHHHHHHHHHH
Q 012837 359 LTWFRNERIYHWLNAARPLENVLNYIIT 386 (455)
Q Consensus 359 ~TWfR~~~~~~w~d~~~~~~~i~~~i~~ 386 (455)
+||||+++.++|+|.++ .+.+.+.+.+
T Consensus 283 ~TWfR~~~~~~w~~~~~-~~~~~~~~~~ 309 (316)
T 3foz_A 283 ITWLRGWEGVHWLDSEK-PEQARDEVLQ 309 (316)
T ss_dssp HHHHHSCSSCEEEETTC-HHHHHHHHHT
T ss_pred HHHhCCCCCCeEeCCcC-hHHHHHHHHH
Confidence 99999999999999875 3445444443
No 3
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=100.00 E-value=4.1e-72 Score=565.84 Aligned_cols=309 Identities=35% Similarity=0.547 Sum_probs=208.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDA 122 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a 122 (455)
.+++|+|+|||||||||||..||+++++++|++|++|+|++++|+|+||+.+|+.++||||+|+.+|.+.|+++.|.+.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a 83 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA 83 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCcc-ccccCCC
Q 012837 123 RHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAAN 201 (455)
Q Consensus 123 ~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~-A~~i~~n 201 (455)
.++++++.++|+.||+|||||+|++||++|+.++|..++++|..++..+.+ .+|+. ++..|...||. |++||||
T Consensus 84 ~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~~----~g~~~-l~~~L~~~Dp~~a~~i~~n 158 (323)
T 3crm_A 84 LAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQA----EGWEA-LHRQLAEVDPESAARIHPN 158 (323)
T ss_dssp HHHHHHHHHTTCEEEEEESCHHHHHHHHCCC-------------------------------------------------
T ss_pred HHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHHH----cCHHH-HHHHHHHhCHHHHhhcCCC
Confidence 999999999999999999999999999999988888888888777655443 34444 55667788995 8899999
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCC-HHHHHHHHH
Q 012837 202 DWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSH-RLDLYRSID 280 (455)
Q Consensus 202 d~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~-Re~L~~rI~ 280 (455)
|.+|++|||||+..||+|+|+|+.. +...... +.......++|++++|+|+++ |++||+||+
T Consensus 159 d~~Ri~RALEv~~~tG~~~s~~~~~------~~~~~~~-----------~~~~~~~~~~~~~~~~~L~~~~r~~L~~RI~ 221 (323)
T 3crm_A 159 DPQRLMRALEVYRLGGVSMSDLRRR------QSAEKAD-----------FDASGRNQLPYTVAQLAIAPEQRQVLHARIA 221 (323)
T ss_dssp ----------------------------------------------------------CSEEEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHhh------ccccccc-----------cccccccCCCCceEEEEEcCCCHHHHHHHHH
Confidence 9999999999999999999998421 1000000 000001124689999999996 999999999
Q ss_pred HHHHHhccCCCChHHHHHHHHHcC-CCCCCccccccccHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 012837 281 LRCEDMLPGSDGILSEAAWLLDEG-LLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQL 359 (455)
Q Consensus 281 ~Rvd~Ml~~~~GLl~Ev~~L~~~g-~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~~~~~~l~~i~~~TR~yAKRQ~ 359 (455)
+||++|++ +||++||++|++.| +.+ ..+++|+|||||+++||. |+++++++ ++.++++||||||||+
T Consensus 222 ~Rvd~M~~--~Gl~~Ev~~L~~~~~~~~-~~~~~~aIGyke~~~yl~------g~~~~~ea---i~~~~~~Tr~yAKRQ~ 289 (323)
T 3crm_A 222 QRFRQMLE--QGFIAEVEALHARSDLHA-GLPSIRAVGYRQVWDYLD------GKLSYAEM---TERGIIATRQLAKRQF 289 (323)
T ss_dssp HHHHHHHH--TTHHHHHHHHHTCTTCCT-TSSGGGSTTHHHHHHHHT------TSSCHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCHHHHHHHHHhcCCCCC-CCcchheecHHHHHHHHc------CCCCHHHH---HHHHHHHHHHHHHHHH
Confidence 99999999 99999999999876 443 358999999999999996 89998875 8999999999999999
Q ss_pred HHhcCCCCceEecCCCc--HHHHHHHHH
Q 012837 360 TWFRNERIYHWLNAARP--LENVLNYII 385 (455)
Q Consensus 360 TWfR~~~~~~w~d~~~~--~~~i~~~i~ 385 (455)
||||+++.++|+|.+++ .+++++.|.
T Consensus 290 TWfr~~~~~~w~~~~~~~~~~~~~~~~~ 317 (323)
T 3crm_A 290 TWLRSWSHLHWMDSLAGDNLPRALRYLK 317 (323)
T ss_dssp HHHHTCSSCEEEETTCSCHHHHHHHHHH
T ss_pred HHhCCCCCCeEecCCCchHHHHHHHHHH
Confidence 99999999999997543 344554443
No 4
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=100.00 E-value=1.5e-72 Score=582.88 Aligned_cols=287 Identities=31% Similarity=0.510 Sum_probs=248.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDAR 123 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a~ 123 (455)
+++|+|+||||||||+||..||+.++++|||+||+||||+++|+|+||+.+|+.+++|||+|..+|.+.|++++|.++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~ 81 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM 81 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCC-CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCcc-ccccCCC
Q 012837 124 HATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPK-ASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAAN 201 (455)
Q Consensus 124 ~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~-~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~-A~~i~~n 201 (455)
++|++|+++|++||||||||+|++||+.|+.+.|+ .+++++... . .....+++ .++..|...||. |++||||
T Consensus 82 ~~i~~i~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~----~-~~~~~g~~-~L~~~L~~~DP~~A~rihpn 155 (409)
T 3eph_A 82 NAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQL----D-ILESTDPD-VIYNTLVKCDPDIATKYHPN 155 (409)
T ss_dssp HHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHH----H-HHTCSSSS-SHHHHHHHSCHHHHTTSCTT
T ss_pred HHHHHHHhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHH----H-HHhccCHH-HHHHHHHHhCHHHHHhcCcc
Confidence 99999999999999999999999999999876654 344444432 1 12234444 455667888995 8899999
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHH
Q 012837 202 DWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDL 281 (455)
Q Consensus 202 d~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~rI~~ 281 (455)
|.+||+||||||..||+|+|++.. ++ ....+|++++|||++||++||+||++
T Consensus 156 d~~Ri~RALEV~~~TG~~~S~~~~------~~----------------------~~~~~~~~~~i~L~~~R~~L~~RI~~ 207 (409)
T 3eph_A 156 DYRRVQRMLEIYYKTGKKPSETFN------EQ----------------------KITLKFDTLFLWLYSKPEPLFQRLDD 207 (409)
T ss_dssp CHHHHHHHHHHHHHHCSCHHHHHH------TC----------------------CCCCSSEEEEEEEECCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHh------hc----------------------cCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999842 11 12357999999999999999999999
Q ss_pred HHHHhccCCCChHHHHHHHHHcCCCC------CCccccccccHHHHHHHHHHhhhcCC-----CCCHHHHHHHHHHHHHH
Q 012837 282 RCEDMLPGSDGILSEAAWLLDEGLLP------NSNSATRAIGYRQAMEYLLRCRQQGG-----TSSTGEFYAFLAEFQKA 350 (455)
Q Consensus 282 Rvd~Ml~~~~GLl~Ev~~L~~~g~~~------~~~~a~~aIGYkE~~~yL~~~~~~~g-----~~s~~~~~~~l~~i~~~ 350 (455)
||++||+ +||++||+.|++.+... ...+++|||||||+++||. | ++++++ +++.++++
T Consensus 208 Rvd~Ml~--~GlleEv~~L~~~~~~~~~~~~~~~~~~~~aIGYkE~~~yL~------g~~~~~e~~l~e---aie~ik~~ 276 (409)
T 3eph_A 208 RVDDMLE--RGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLT------GKTDDNTVKLED---CIERMKTR 276 (409)
T ss_dssp HHHHHHH--TTHHHHHHHHHHHHTTTTCCGGGTTSGGGGSTTTGGGGGGGC-------------CCHHH---HHHHHHHH
T ss_pred HHHHHHH--CcHHHHHHHHHHhccccccccccccccchhcccHHHHHHHHc------CCCcccccCHHH---HHHHHHHH
Confidence 9999999 99999999999863211 1247899999999999996 5 466665 58999999
Q ss_pred HHHHHhHHHHHhcCC------CCceEecCCC
Q 012837 351 SRNFAKRQLTWFRNE------RIYHWLNAAR 375 (455)
Q Consensus 351 TR~yAKRQ~TWfR~~------~~~~w~d~~~ 375 (455)
||||||||+||||++ ..++|+|+++
T Consensus 277 TRqyAKRQ~TWfR~~~~~~~~~~i~~lD~t~ 307 (409)
T 3eph_A 277 TRQYAKRQVKWIKKMLIPDIKGDIYLLDATD 307 (409)
T ss_dssp HHHHHHHHHHHHHHTHHHHTTTCEEEEECSC
T ss_pred HHHHHHHHHHHHHhhcccccCCceEEEcCCC
Confidence 999999999999998 5789999875
No 5
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=100.00 E-value=3.2e-68 Score=540.61 Aligned_cols=284 Identities=33% Similarity=0.565 Sum_probs=252.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDAR 123 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a~ 123 (455)
+++|+|+|||||||||||..||+.++++|||+||+|+|++++|+|+||+.+|+.+++|||++..++.+.|++.+|...+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~ 86 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAE 86 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCC-CCHH----HHHHHHHHHHHHHhcCChHHHHHHHHHcCCcc-ccc
Q 012837 124 HATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPK-ASPE----IIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARS 197 (455)
Q Consensus 124 ~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~-~~~~----ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~-A~~ 197 (455)
..+.++..+|+.|||||||++|+++++.|+..+|. .+++ ++..+.. ..+.+++ .++..++..||. |++
T Consensus 87 ~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl~r-----~~~~G~~-~l~~~L~~vdP~~a~~ 160 (340)
T 3d3q_A 87 KYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKE-----LEHLNNN-KLHEYLASFDKESAKD 160 (340)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHT-----TSSSCHH-HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHHHH-----HHhcCHH-HHHHHHHhhCcHHHhh
Confidence 99999999999999999999999999999877777 7777 5554432 2334554 566777888995 789
Q ss_pred cCCCcHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHH
Q 012837 198 LAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYR 277 (455)
Q Consensus 198 i~~nd~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~ 277 (455)
|||||.+|++|||||+..||+|+|+|.. ++ ....+|++++|||++||++||+
T Consensus 161 I~p~d~~Ri~RALEv~~~tG~~~s~~~~------~~----------------------~~~~~~~~~~~~L~~~r~~L~~ 212 (340)
T 3d3q_A 161 IHPNNRKRVLRAIEYYLKTKKLLSSRKK------VQ----------------------QFTENYDTLLIGIEMSRETLYL 212 (340)
T ss_dssp SCTTCHHHHHHHHHHHHHHCSCSHHHHH------HH----------------------HHSBCSEEEEEEEECCHHHHHH
T ss_pred cCccCchhhhhHHHHHHHhCCChHHHhh------hc----------------------cCCCCCceEEEEeCCCHHHHHH
Confidence 9999999999999999999999999731 10 0112489999999999999999
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 012837 278 SIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKR 357 (455)
Q Consensus 278 rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~~~~~~l~~i~~~TR~yAKR 357 (455)
||++||+.||+ +||++||++|++.|+. ..+++|||||||+++||. |+++++++ ++.++++|||||||
T Consensus 213 RI~~Rvd~M~~--~Gl~~Ev~~L~~~~~~--~~~~~~aIGyke~~~yl~------g~~~~~ea---~~~~~~~Tr~yAKR 279 (340)
T 3d3q_A 213 RINKRVDIMLG--HGLFNEVQHLVEQGFE--ASQSMQAIGYKELVPVIK------GNISMENA---VEKLKQHSRQYAKR 279 (340)
T ss_dssp HHHHHHHHHHH--HTHHHHHHHHHHTTCT--TSSGGGSTTTTTHHHHHH------TSSCHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCHHHHHHHHHHcCCC--cchhhhhccHHHHHHHHc------CCCCHHHH---HHHHHHHHHHHHHH
Confidence 99999999999 9999999999998754 458999999999999997 99998875 89999999999999
Q ss_pred HHHHhcCCCCceEecCC
Q 012837 358 QLTWFRNERIYHWLNAA 374 (455)
Q Consensus 358 Q~TWfR~~~~~~w~d~~ 374 (455)
|+||||+++.++|+|.+
T Consensus 280 Q~TWfr~~~~~~w~~~~ 296 (340)
T 3d3q_A 280 QLTWFKNKMNVHWLNKE 296 (340)
T ss_dssp HHHHHHHTCCCEEEETT
T ss_pred HHHHhCCCCCCeeecCc
Confidence 99999999999999864
No 6
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=100.00 E-value=3.3e-57 Score=459.19 Aligned_cols=246 Identities=26% Similarity=0.406 Sum_probs=200.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCc-ccccchhhHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHP-CEDYSVGKFFE 120 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~-~~~~sv~~f~~ 120 (455)
.++++|+|+||||||||+||+.||++++++|||+||+|||++++|+|+||+++|+.++||||+|+.+| .+.|++++|++
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~ 117 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRS 117 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHH
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCccccccCC
Q 012837 121 DARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAA 200 (455)
Q Consensus 121 ~a~~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~A~~i~~ 200 (455)
.+.++|++|..+|++||+|||||+|+++++.|.. .|.. .||.++. |
T Consensus 118 ~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~-~p~~-------------------------------~d~~~a~--~ 163 (339)
T 3a8t_A 118 LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRF-DSSG-------------------------------PGVFEEG--S 163 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSC-CTTC-------------------------------C---------
T ss_pred HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCC-CCcc-------------------------------cChhhhc--c
Confidence 9999999999999999999999999999999862 1221 1332111 4
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHH
Q 012837 201 NDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSID 280 (455)
Q Consensus 201 nd~~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~Re~L~~rI~ 280 (455)
|| ++++ ..+|++++|||.++|++||+||+
T Consensus 164 ~~----------------~~~~-----------------------------------~~~~~~~~i~L~~~re~L~~RI~ 192 (339)
T 3a8t_A 164 HS----------------VVSS-----------------------------------ELRYDCCFLWVDVSVKVLTDYLA 192 (339)
T ss_dssp ---------------------------------------------------------CBSSEEEEEEEECCHHHHHHHHH
T ss_pred cC----------------cccc-----------------------------------ccccCeEEEEEeCCHHHHHHHHH
Confidence 44 1111 12467889999999999999999
Q ss_pred HHHHHhccCCCChHHHHHHHHHcCCCCC------CccccccccHHHHHHHHHHhhhc----CCCCC----HHHHHHHHHH
Q 012837 281 LRCEDMLPGSDGILSEAAWLLDEGLLPN------SNSATRAIGYRQAMEYLLRCRQQ----GGTSS----TGEFYAFLAE 346 (455)
Q Consensus 281 ~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~------~~~a~~aIGYkE~~~yL~~~~~~----~g~~s----~~~~~~~l~~ 346 (455)
.|++.||+ +||++||+.|++.|.... ..+++|||||||+++||...... ++..+ ...+.++++.
T Consensus 193 ~R~~~Ml~--~Gl~eEv~~L~~~~~~~~~~~~~~~~~~~~aIGykE~~~yl~g~~~~~~~~~~~~~~~~~~~~l~eaie~ 270 (339)
T 3a8t_A 193 KRVDDMLE--LGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRA 270 (339)
T ss_dssp HHHHHHHH--HTHHHHHHHHCCTTCSCTTSCGGGSCGGGGSTTHHHHHHHHHHSCTTCCCCSCCTTHHHHHHHHHHHHHH
T ss_pred hhccHhhh--ccHHHHHHHHHHhcCccccccchhccHHHHHhhHHHHHHHHcCcccccccccccccchhhhcCHHHHHHH
Confidence 99999999 999999999998764221 15899999999999999832110 01111 2235667999
Q ss_pred HHHHHHHHHhHHHHHhcCCCCc----eEecCC
Q 012837 347 FQKASRNFAKRQLTWFRNERIY----HWLNAA 374 (455)
Q Consensus 347 i~~~TR~yAKRQ~TWfR~~~~~----~w~d~~ 374 (455)
++++||||||||+||||++..+ +|+|++
T Consensus 271 ik~~TR~yAKRQ~tWfr~~~~~~w~i~~lDat 302 (339)
T 3a8t_A 271 IKENTCHLAKRQIGKILRLKGAGWDLRRLDAT 302 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEECH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCCceeeeccc
Confidence 9999999999999999987654 457654
No 7
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.97 E-value=1.3e-30 Score=252.98 Aligned_cols=214 Identities=19% Similarity=0.214 Sum_probs=173.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCccc-ccchhhHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCE-DYSVGKFFEDAR 123 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~-~~sv~~f~~~a~ 123 (455)
++|+|+|||||||||||..||+++++++|+.|++++|++++++|++|+.+|+.+++||+++..+|.+ .|+...|.+.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999998876 799999999999
Q ss_pred HHHHHHHhcCCccEEechhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHcCCccccccCCCcH
Q 012837 124 HATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDW 203 (455)
Q Consensus 124 ~~i~~I~~~gk~pIvvGGTg~Yl~aLl~g~~~~p~~~~~ir~~~~~~l~~~~~~~~~~~~l~~ll~~~DP~A~~i~~nd~ 203 (455)
+.+ +++++|+.||++||++.|++.++.+. .|
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~-------------------------~~----------------------- 112 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSISLLNCMAKSP-------------------------FW----------------------- 112 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHHHHHHHHHCT-------------------------TT-----------------------
T ss_pred HHH-HHHhCCCCeEEeccHHHHHHHHHhcc-------------------------cc-----------------------
Confidence 999 88899999999999998775544320 00
Q ss_pred HHHHHHHHHHHHcCCCCCCCcCCcccccccCCCcccccccccccCCCCCCCCCCCCCCceEEEEEeCC-HHHHHHHHHHH
Q 012837 204 YRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSH-RLDLYRSIDLR 282 (455)
Q Consensus 204 ~Rl~RaLEi~~~tG~~~S~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~L~~~-Re~L~~rI~~R 282 (455)
. ..+++.++||++| ++.+.+|+..|
T Consensus 113 --------------------~----------------------------------~~~~~~~i~l~~~~~e~l~~Rl~~R 138 (253)
T 2ze6_A 113 --------------------R----------------------------------SGFQWHVKRLRLGDSDAFLTRAKQR 138 (253)
T ss_dssp --------------------T----------------------------------SSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred --------------------c----------------------------------ccCceEEEEecchhHHHHHHHHHHH
Confidence 0 1245678899988 59999999999
Q ss_pred HHHhccC---CCChHHHHHHHHHcCCCCCC-ccccccccHHHHHHHHHHhhhcCCC---CCHHHHHHHHHHHHHHHHHHH
Q 012837 283 CEDMLPG---SDGILSEAAWLLDEGLLPNS-NSATRAIGYRQAMEYLLRCRQQGGT---SSTGEFYAFLAEFQKASRNFA 355 (455)
Q Consensus 283 vd~Ml~~---~~GLl~Ev~~L~~~g~~~~~-~~a~~aIGYkE~~~yL~~~~~~~g~---~s~~~~~~~l~~i~~~TR~yA 355 (455)
.++|+.. +.|+++|+..+++. |.. ..+...+||+|+++|+.......++ .+.+.+.++++.|+.+|++||
T Consensus 139 ~~~ml~~~~~~~~~l~e~~~~~~~---p~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~a 215 (253)
T 2ze6_A 139 VAEMFAIREDRPSLLEELAELWNY---PAARPILEDIDGYRCAIRFARKHDLAISQLPNIDAGRHVELIEAIANEYLEHA 215 (253)
T ss_dssp HHHHHCCCSSSCCHHHHHHHHHTS---TTHHHHHTTSTTHHHHHHHHHHHTCCGGGGGGCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccchHHHHHHHhcCC---cchHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999761 12999999999875 221 2234578999999999754322121 122234567899999999999
Q ss_pred hHHHHHhcC
Q 012837 356 KRQLTWFRN 364 (455)
Q Consensus 356 KRQ~TWfR~ 364 (455)
|||.+||.+
T Consensus 216 ~~q~~~~~~ 224 (253)
T 2ze6_A 216 LSQERDFPQ 224 (253)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHHHHH
Confidence 999988744
No 8
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=99.40 E-value=8.7e-14 Score=131.71 Aligned_cols=92 Identities=33% Similarity=0.507 Sum_probs=72.1
Q ss_pred hhhHHhhhhcccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccc---cccCCCCccc
Q 012837 19 KPLLRQFARRRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLD---IGSAKPSSSD 95 (455)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~---I~Takps~~e 95 (455)
.+|-..++..-.+.+....+ .++.|+|+||||||||+||..||++.+ ++|+.|++|||++++ |+|++|+
T Consensus 13 ~~l~~~~a~~~~lHa~~v~~----~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~~~liGtak~~--- 84 (205)
T 2qmh_A 13 MYLDSQLAERRSMHGVLVDI----YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDEQTIVGAAPPI--- 84 (205)
T ss_dssp --------CCCCEESEEEEE----TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECSTTCEEEECCSS---
T ss_pred HHHHHhcCcceeeeEEEEEE----CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCCceEEEECCcc---
Confidence 34444443333444454554 678999999999999999999999877 999999999999999 9999985
Q ss_pred cccCcccc----ccccCcccccchhhHHHH
Q 012837 96 RKEVPHHL----IDILHPCEDYSVGKFFED 121 (455)
Q Consensus 96 ~~~v~hhl----id~~~~~~~~sv~~f~~~ 121 (455)
++||+ +|++++.+.|+++.|...
T Consensus 85 ---i~h~lEiRGigiid~~~~f~~~~f~~~ 111 (205)
T 2qmh_A 85 ---LSHLLEIRGLGIIDVMNLFGAGAVRED 111 (205)
T ss_dssp ---STTEEEETTTEEEEHHHHHCTTSBCSC
T ss_pred ---ccccccccceeEEcccccCCHHHHHhc
Confidence 89999 999999999999988543
No 9
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.98 E-value=2e-10 Score=108.17 Aligned_cols=91 Identities=18% Similarity=0.301 Sum_probs=71.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhH---
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKF--- 118 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f--- 118 (455)
.++++|+|+||||||||||+..|++.++..+ .....++|.+|...|..+++||+++...+...+..+.|
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~--------~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~ 88 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKF--------VYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEF 88 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTE--------ECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccE--------EeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhh
Confidence 4678999999999999999999999876433 34556789999999999999999987666544433333
Q ss_pred -------HHHHHHHHHHHHhcCCccEEec
Q 012837 119 -------FEDARHATKDVLKKGRVPIVTG 140 (455)
Q Consensus 119 -------~~~a~~~i~~I~~~gk~pIvvG 140 (455)
+....+.+++++++|+.+|+..
T Consensus 89 ~~~~~n~YGt~~~~v~~~l~~G~~vildi 117 (197)
T 3ney_A 89 GSYQGNMFGTKFETVHQIHKQNKIAILDI 117 (197)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred hhhhceecccchhhHHHHHhcCCeEEEEE
Confidence 3344677899999999999864
No 10
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.97 E-value=1.7e-10 Score=107.73 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=73.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhh----
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGK---- 117 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~---- 117 (455)
+++.+|+|+||+|||||||+..|++.++. +++....++|.+|...|..++.||+++...+......+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~--------~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~ 77 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET--------SFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEY 77 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC--------CCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC--------cEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEE
Confidence 46789999999999999999999998863 245667789999999999999999988765543322222
Q ss_pred ------HHHHHHHHHHHHHhcCCccEE---echhhHHHH
Q 012837 118 ------FFEDARHATKDVLKKGRVPIV---TGGTGLYLR 147 (455)
Q Consensus 118 ------f~~~a~~~i~~I~~~gk~pIv---vGGTg~Yl~ 147 (455)
++....+.+++++++|+.+|+ +.|...+.+
T Consensus 78 ~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~ 116 (208)
T 3tau_A 78 AEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRK 116 (208)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHH
T ss_pred EEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHH
Confidence 233335667889999999998 455554433
No 11
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.88 E-value=5.5e-10 Score=104.15 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=70.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccch---------
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSV--------- 115 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv--------- 115 (455)
++|+|+||+|||||||+..|.+.++.. +.....++|.+|.+.|..|+.|||++.-.+......
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~--------~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~ 73 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQF 73 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT--------EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC--------eEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEE
Confidence 579999999999999999999987632 244678899999999999999999997666443332
Q ss_pred -hhHHHHHHHHHHHHHhcCCccEEec
Q 012837 116 -GKFFEDARHATKDVLKKGRVPIVTG 140 (455)
Q Consensus 116 -~~f~~~a~~~i~~I~~~gk~pIvvG 140 (455)
+.|+....+.+++.+++|+.+|+.+
T Consensus 74 ~g~~YGt~~~~v~~~l~~g~~vil~i 99 (186)
T 1ex7_A 74 SGNYYGSTVASVKQVSKSGKTCILDI 99 (186)
T ss_dssp TTEEEEEEHHHHHHHHHHTSEEEEEC
T ss_pred cCceeeeecceeeehhhCCCEEEecC
Confidence 3345556778888999999888864
No 12
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.76 E-value=3e-09 Score=96.81 Aligned_cols=90 Identities=12% Similarity=0.249 Sum_probs=61.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhH---
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKF--- 118 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f--- 118 (455)
.++++++|+||||||||||++.|+..++.. ++..+.++|.+|...+..++.||+++...+...+..+.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--------~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~ 74 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--------FAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEY 74 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--------EECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--------EEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEE
Confidence 356899999999999999999999987521 234456788899888999999998875443221111111
Q ss_pred -------HHHHHHHHHHHHhcCCccEEe
Q 012837 119 -------FEDARHATKDVLKKGRVPIVT 139 (455)
Q Consensus 119 -------~~~a~~~i~~I~~~gk~pIvv 139 (455)
+....+.+++++++|+.+|+.
T Consensus 75 ~~~~~n~yg~~~~~i~~~l~~g~~vil~ 102 (180)
T 1kgd_A 75 GSHEDAMYGTKLETIRKIHEQGLIAILD 102 (180)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCEEEEE
T ss_pred EEEcCccccccHHHHHHHHHCCCeEEEE
Confidence 222245577888899988886
No 13
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.62 E-value=1.1e-08 Score=93.42 Aligned_cols=96 Identities=22% Similarity=0.280 Sum_probs=61.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccc-------
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYS------- 114 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~s------- 114 (455)
+++.+|+|+||+|||||||++.|+..++ .++-.....+..+...+..++.+++.+...+.....
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEH 75 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEee
Confidence 5678999999999999999999999875 233344455666666677777777665422111000
Q ss_pred ---hhhHHHHHHHHHHHHHhcCCccEEec---hhhHHH
Q 012837 115 ---VGKFFEDARHATKDVLKKGRVPIVTG---GTGLYL 146 (455)
Q Consensus 115 ---v~~f~~~a~~~i~~I~~~gk~pIvvG---GTg~Yl 146 (455)
.+.++....+.+.+++..|+.+|+.+ |...+.
T Consensus 76 ~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~ 113 (205)
T 3tr0_A 76 ATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIR 113 (205)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHH
T ss_pred eeeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHH
Confidence 01111122345777888899888876 444443
No 14
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.62 E-value=1.9e-08 Score=90.68 Aligned_cols=81 Identities=23% Similarity=0.252 Sum_probs=54.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDA 122 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a 122 (455)
.++.|+|+||+||||||+|..||+.++..+++.|... + +..+.+ ..+....+....|....
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~--~------------~~~g~~-----~~~~~~~~g~~~~~~~~ 64 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEI--E------------KRTGAD-----IAWIFEMEGEAGFRRRE 64 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHH--H------------HHHTSC-----HHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHH--H------------HHcCCC-----hhhHHHHhCHHHHHHHH
Confidence 4578999999999999999999999999999999751 1 111111 11111122334566666
Q ss_pred HHHHHHHHhcCCccEEechh
Q 012837 123 RHATKDVLKKGRVPIVTGGT 142 (455)
Q Consensus 123 ~~~i~~I~~~gk~pIvvGGT 142 (455)
.+++..+......+|.+||.
T Consensus 65 ~~~~~~~~~~~~~vi~~gg~ 84 (185)
T 3trf_A 65 REMIEALCKLDNIILATGGG 84 (185)
T ss_dssp HHHHHHHHHSSSCEEECCTT
T ss_pred HHHHHHHHhcCCcEEecCCc
Confidence 67788887776766667664
No 15
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=2.5e-08 Score=91.85 Aligned_cols=44 Identities=27% Similarity=0.290 Sum_probs=33.7
Q ss_pred cceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 32 FATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 32 ~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
-++||++ .++++|+|+||+||||||+++.||+.++..+++.|..
T Consensus 16 ~~~~~~~---~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~ 59 (199)
T 3vaa_A 16 ENLYFQS---NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWY 59 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CceeEec---CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHH
Confidence 3588887 5678999999999999999999999999999999864
No 16
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.51 E-value=3e-08 Score=91.72 Aligned_cols=91 Identities=12% Similarity=0.236 Sum_probs=62.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCccc-----cc---
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCE-----DY--- 113 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~-----~~--- 113 (455)
.++++|+|+||+|||||||+..|++.++.. ++..+..+|.+|...+..+..+++++...... .|
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~--------~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSR--------FRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEF 81 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTT--------EEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccc--------eeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEe
Confidence 467899999999999999999999998621 34455778999988888888888875432211 11
Q ss_pred --chhhHHHHHHHHHHHHHhcCCccEEec
Q 012837 114 --SVGKFFEDARHATKDVLKKGRVPIVTG 140 (455)
Q Consensus 114 --sv~~f~~~a~~~i~~I~~~gk~pIvvG 140 (455)
..+.++....+.+..+++.|+.+|+.+
T Consensus 82 ~~~~~~~~~~~~~~i~~~l~~g~~vi~d~ 110 (204)
T 2qor_A 82 DKYANNFYGTLKSEYDLAVGEGKICLFEM 110 (204)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred HHhCCCeecCCHHHHHHHHHcCCeEEEEE
Confidence 001122222345667778888877763
No 17
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.42 E-value=2.6e-08 Score=93.79 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=42.7
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHH-HHcCCcEEEcCccceecccccccCCCCccccccCccccccc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELA-KRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDI 106 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA-~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~ 106 (455)
.+||++ .++.+|+|+||+|||||||++.|+ ..++. ++.+.+++|.+|...+..++.+++.+.
T Consensus 19 ~~sl~v---~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~~~~~~ 81 (231)
T 3lnc_A 19 PGSMLK---SVGVILVLSSPSGCGKTTVANKLLEKQKNN---------IVKSVSVTTRAARKGEKEGKDYYFVDR 81 (231)
T ss_dssp ---CCE---ECCCEEEEECSCC----CHHHHHHC----C---------EEECCCEESSCCCTTCCBTTTBEECCH
T ss_pred CCCccc---CCCCEEEEECCCCCCHHHHHHHHHhcCCCC---------cccccccCCCCCCccccCCCeEEEecH
Confidence 378888 778999999999999999999999 76642 466778889899888888888776654
No 18
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.38 E-value=4.6e-07 Score=87.24 Aligned_cols=43 Identities=28% Similarity=0.539 Sum_probs=35.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccccc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDI 86 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I 86 (455)
+++.+|+|+||+||||||++..||++++..+++.| .+||++.+
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g--~~~r~~~~ 49 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTG--AMYRIATL 49 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH--HHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCC--cHHHHHHH
Confidence 45679999999999999999999999997766555 56888763
No 19
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.32 E-value=1.8e-07 Score=85.33 Aligned_cols=88 Identities=22% Similarity=0.340 Sum_probs=58.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccc-----c----c
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCED-----Y----S 114 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~-----~----s 114 (455)
+++++|+||+|||||||++.|+..++.. .......+|..|...+..++.+|+++...+... + .
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~ 72 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 72 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG--------EECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc--------ceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEE
Confidence 4689999999999999999999987522 234556778888888888888877653221110 0 0
Q ss_pred -hhhHHHHHHHHHHHHHhcCCccEEe
Q 012837 115 -VGKFFEDARHATKDVLKKGRVPIVT 139 (455)
Q Consensus 115 -v~~f~~~a~~~i~~I~~~gk~pIvv 139 (455)
.+.++....+.++++++.|+.+|+.
T Consensus 73 ~~~~~yg~~~~~i~~~l~~g~~~il~ 98 (186)
T 3a00_A 73 FSGNYYGSTVASVKQVSKSGKTCILD 98 (186)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEE
T ss_pred EeceeccCcHHHHHHHHHcCCeEEEE
Confidence 0112223345677788888877763
No 20
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.15 E-value=1.8e-06 Score=81.08 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=39.6
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCcccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHL 103 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhl 103 (455)
|-++||++ .++.+++|+||+|||||||++.|+..++ +.++-+.++.+..+...++.++.+.+
T Consensus 13 l~~isl~i---~~G~~~~lvGpsGsGKSTLl~~L~g~~p--------G~i~~g~~~~~~~~~~~~~~~i~~~~ 74 (218)
T 1z6g_A 13 GLVPRGSM---NNIYPLVICGPSGVGKGTLIKKLLNEFP--------NYFYFSVSCTTRKKREKEKEGVDYYF 74 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST--------TTEEECCCEECSCCCSSCCBTTTBEE
T ss_pred ccCCceec---CCCCEEEEECCCCCCHHHHHHHHHhhCC--------CcEEEeecccCCCCCcccccCCeEEE
Confidence 44689998 7789999999999999999999999764 23433777777666555556654444
No 21
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.13 E-value=1.4e-05 Score=82.45 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=33.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
..+.+|+|+||+||||||+|..|++.++..+|+.|..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 3568999999999999999999999999888888864
No 22
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.13 E-value=4.4e-06 Score=77.94 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGL 84 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l 84 (455)
++++|+|+||.||||||++..||+++|.+++ | ..+|+..
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~--D-~~~~~~~ 43 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLY--S-KELLDEV 43 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEE--C-HHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEE--C-HHHHHHH
Confidence 4679999999999999999999999998887 4 4566543
No 23
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.05 E-value=8.4e-07 Score=86.05 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=59.0
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPC 110 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~ 110 (455)
|-+++|++....+++.|+|+||+||||||+++.||+.++..++..|.. ++... . + .++....
T Consensus 35 l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~--~~~~~---~--------g-----~~i~~i~ 96 (250)
T 3nwj_A 35 LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTL--IEQAM---K--------G-----TSVAEIF 96 (250)
T ss_dssp HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHH--HHHHS---T--------T-----SCHHHHH
T ss_pred hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHH--HHHHh---c--------C-----ccHHHHH
Confidence 445888883322378999999999999999999999999888887753 33221 0 0 0000011
Q ss_pred cccchhhHHHHHHHHHHHHHhc-CCccEEech
Q 012837 111 EDYSVGKFFEDARHATKDVLKK-GRVPIVTGG 141 (455)
Q Consensus 111 ~~~sv~~f~~~a~~~i~~I~~~-gk~pIvvGG 141 (455)
..+....|.....+++.++... ....|.+||
T Consensus 97 ~~~ge~~fr~~e~~~l~~l~~~~~~~Via~Gg 128 (250)
T 3nwj_A 97 EHFGESVFREKETEALKKLSLMYHQVVVSTGG 128 (250)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHCSSEEEECCG
T ss_pred HHhCcHHHHHHHHHHHHHHHhhcCCcEEecCC
Confidence 1223344555556677777776 455566665
No 24
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.05 E-value=2.9e-06 Score=80.70 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=27.2
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCc
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGE 71 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~ 71 (455)
...|-++||++ .++.+|+|+||+|||||||++.|+..+|..
T Consensus 12 ~~~l~~isl~i---~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 12 DLGTENLYFQS---MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred ceeecceeccC---CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34455699998 778899999999999999999999988643
No 25
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.05 E-value=2.9e-06 Score=77.75 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=32.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++++|+|+||+||||||+|..|++.++..+++.|.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~ 52 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDAL 52 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcC
Confidence 457999999999999999999999999999998864
No 26
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.04 E-value=1.5e-06 Score=83.54 Aligned_cols=43 Identities=42% Similarity=0.587 Sum_probs=36.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccccc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDI 86 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I 86 (455)
+++.+|+|+||+|||||||++.||+++|.. ..|++.+||++.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~--~~d~g~i~r~~~~ 67 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR--LLDSGAIYRVLAL 67 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE--EEEHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC--cCCCCceehHhHH
Confidence 466899999999999999999999999954 4577788877653
No 27
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.04 E-value=2.4e-06 Score=77.61 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=34.1
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHH-cCCcEEEcCcc
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKR-LNGEIISADSV 78 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~-l~~~iIs~DS~ 78 (455)
+|+++ +++++|+|+|++||||||++..||+. +|..+|++|..
T Consensus 3 ~~~~~---~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~ 45 (184)
T 1y63_A 3 GSMEQ---PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL 45 (184)
T ss_dssp ---CC---CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH
T ss_pred cCcCC---CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHH
Confidence 34454 56789999999999999999999999 79889888853
No 28
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.03 E-value=4.4e-06 Score=74.12 Aligned_cols=34 Identities=32% Similarity=0.347 Sum_probs=30.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHH-HcCCcEEEcCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAK-RLNGEIISADS 77 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~-~l~~~iIs~DS 77 (455)
+++|+|+||+||||||+|..|++ .++..+|+.|.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD 36 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH
Confidence 46899999999999999999999 68878888774
No 29
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.03 E-value=3.4e-06 Score=74.25 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=31.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++|+|+||+||||||++..||+.++..+++.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCccc
Confidence 4899999999999999999999999999888853
No 30
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.02 E-value=2.7e-06 Score=76.33 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++++|+|.|++||||||+|..||+.++..+|+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 37 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGEL 37 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence 567999999999999999999999999888888853
No 31
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.99 E-value=2.9e-06 Score=80.45 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=55.8
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcc---------c
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPC---------E 111 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~---------~ 111 (455)
.+++.+++|+||+|||||||.+.|+..++. | .+.-.+.+.|..|...++.++.+++.+...+. +
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p-----~--~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL-----Y--DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT-----T--TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC-----C--ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHH
Confidence 357889999999999999999999998752 1 01114455666666667788888776532211 0
Q ss_pred ccch-hhHHHHHHHHHHHHHhcCCccEEe
Q 012837 112 DYSV-GKFFEDARHATKDVLKKGRVPIVT 139 (455)
Q Consensus 112 ~~sv-~~f~~~a~~~i~~I~~~gk~pIvv 139 (455)
...+ +.++....+.+.++++.|++.|+.
T Consensus 86 ~~~~~~~~yg~~~~~v~~~l~~G~illLD 114 (219)
T 1s96_A 86 HAEVFGNYYGTSREAIEQVLATGVDVFLD 114 (219)
T ss_dssp EEEETTEEEEEEHHHHHHHHTTTCEEEEE
T ss_pred HHHHHhccCCCCHHHHHHHHhcCCeEEEE
Confidence 0000 111112234466677777766655
No 32
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.99 E-value=4.7e-06 Score=74.30 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEE--cCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIIS--ADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs--~DS 77 (455)
++++|+|+||+||||||+|+.||++++..++. .|.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 45799999999999999999999999877664 553
No 33
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.97 E-value=4e-06 Score=82.38 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc--CCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL--NGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l--~~~iIs~DS 77 (455)
.++.+|+|+||+||||||+|..|++.+ +..+||+|.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 467899999999999999999999998 566777764
No 34
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.96 E-value=4.4e-06 Score=75.14 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+++++|+|+||+||||||++..||+.++..+++.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~ 39 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAF 39 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHH
Confidence 4678999999999999999999999999888888753
No 35
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.96 E-value=4e-06 Score=74.40 Aligned_cols=35 Identities=40% Similarity=0.670 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.+.+|+|+||+|||||||++.||..++..+++.|.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccH
Confidence 35789999999999999999999999988877764
No 36
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.95 E-value=5.9e-06 Score=73.33 Aligned_cols=34 Identities=38% Similarity=0.554 Sum_probs=31.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.+|+|.|++||||||+|..||++++.+++++|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~ 41 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMI 41 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence 5899999999999999999999999999998864
No 37
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.94 E-value=4.7e-06 Score=75.18 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+++++|+|+||+||||||+|..||+.++..+++.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~ 42 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGD 42 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHH
Confidence 466899999999999999999999999988888874
No 38
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.93 E-value=5.1e-06 Score=74.61 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+++++|+|+||+||||||++..||+.++..+++.|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~ 44 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGD 44 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHH
Confidence 456789999999999999999999999998888875
No 39
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.93 E-value=4.1e-06 Score=75.32 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=31.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++|+|+|++||||||+|..||+.+|..+++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchH
Confidence 5799999999999999999999999999998853
No 40
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.93 E-value=7.7e-06 Score=72.94 Aligned_cols=37 Identities=30% Similarity=0.553 Sum_probs=32.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+++.+|+|+||+||||||++..|++.+|..+++.|..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccc
Confidence 4568999999999999999999999999888887754
No 41
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.92 E-value=5e-06 Score=77.04 Aligned_cols=40 Identities=38% Similarity=0.640 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGL 84 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l 84 (455)
++.+|+|+||+||||||++..|++.+|..+++.| .+|+..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g--~i~~~~ 43 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSG--AIYRVL 43 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH--HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCc--ceeehh
Confidence 3568999999999999999999999997776655 566654
No 42
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.91 E-value=6.1e-06 Score=73.82 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
++++|+|+|++||||||+|..||+.++..++++|.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 39 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGD 39 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHH
Confidence 45799999999999999999999999988888874
No 43
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.89 E-value=9.4e-06 Score=77.47 Aligned_cols=41 Identities=37% Similarity=0.515 Sum_probs=33.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCc----------EEEcCccceeccc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGE----------IISADSVQVYRGL 84 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~----------iIs~DS~qiYr~l 84 (455)
.++.+|+|+||+||||||+|..||+.++.. +|++|. +|+.+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~--~~~~~ 70 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS--FYRVL 70 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG--GBCCC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc--ccccc
Confidence 355789999999999999999999999977 677775 46543
No 44
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.89 E-value=5.3e-06 Score=74.48 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+++.+|+|+||+||||||++..||+.++..+++.|.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~ 37 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGD 37 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHH
Confidence 356789999999999999999999999988877764
No 45
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.88 E-value=5.9e-06 Score=75.13 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+++.+|+|+||+||||||++..|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 567899999999999999999999977
No 46
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.88 E-value=5.3e-06 Score=74.24 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN-----GEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS 77 (455)
++++|+|.||+||||||++..||++++ ..+++.|.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~ 41 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence 457999999999999999999999998 77777653
No 47
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.87 E-value=7.3e-06 Score=71.55 Aligned_cols=31 Identities=42% Similarity=0.608 Sum_probs=28.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
++|+|+||+||||||+|..| +.+|..+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~ 32 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMS 32 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHh
Confidence 58999999999999999999 99998888876
No 48
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.87 E-value=9e-06 Score=74.26 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++++|+|+||+||||||+|..||+.++..+|++|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~ 48 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGD 48 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHH
Confidence 345789999999999999999999999998988884
No 49
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.85 E-value=1.3e-05 Score=73.98 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=38.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCcccccc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLID 105 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid 105 (455)
++++++|+||+|||||||.+.|+..++.. ....+..+|.+|...+..++.+++++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~--------~~~~v~~ttr~~~~g~~~g~~~~~~~ 57 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSI--------FGFSVSHTTRNPRPGEEDGKDYYFVT 57 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTT--------EEECCCEECSCCCTTCCBTTTBEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchh--------ceeeeeeeccCCCCcccCCceEEEcc
Confidence 56789999999999999999999877521 12233455666767677776666544
No 50
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.85 E-value=9.3e-06 Score=74.28 Aligned_cols=36 Identities=33% Similarity=0.499 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++.+|+|+||+||||||+|..||+.++..+|+.|.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~ 53 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGE 53 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhH
Confidence 456789999999999999999999999988888874
No 51
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.84 E-value=7.9e-06 Score=73.83 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++++|+|+||+||||||+|..||+.++..+++.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~ 46 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGEL 46 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHH
Confidence 457999999999999999999999999888888753
No 52
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.84 E-value=7.4e-06 Score=73.32 Aligned_cols=34 Identities=44% Similarity=0.511 Sum_probs=30.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
+.|+|+||+||||||+|+.||+.++..+++.|.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~ 38 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFL 38 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHH
Confidence 3699999999999999999999999888887753
No 53
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.83 E-value=3.2e-05 Score=73.96 Aligned_cols=36 Identities=36% Similarity=0.566 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCC--cEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNG--EIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~--~iIs~DS 77 (455)
.++.+|+|+||+||||||+|..|++.++. .+++.|.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH
Confidence 56789999999999999999999999974 4445553
No 54
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.83 E-value=9.1e-06 Score=73.66 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=32.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.++.+|+|+|++||||||++..||+. |..++++|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHH
Confidence 45679999999999999999999998 9889888853
No 55
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.83 E-value=1.3e-05 Score=73.62 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++.+|+|+||+|||||||++.|+..+|..+++.|.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~ 62 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADA 62 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccc
Confidence 467899999999999999999999999877777664
No 56
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.82 E-value=9e-06 Score=71.96 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=31.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++|+|+|++||||||+|..||+.++..+++.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHH
Confidence 5799999999999999999999999999988854
No 57
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.81 E-value=1.1e-05 Score=75.01 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+++..|+|.||+||||||+|..||+.++..+|+.|.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~ 37 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGD 37 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhH
Confidence 356789999999999999999999999988888874
No 58
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.80 E-value=1.2e-05 Score=73.88 Aligned_cols=41 Identities=44% Similarity=0.546 Sum_probs=35.4
Q ss_pred eccCCCCcEEEEEcCCcccHHHHHHHHHHHc-CCcEEEcCcc
Q 012837 38 VASSKKEKVIVISGPTGAGKSQLALELAKRL-NGEIISADSV 78 (455)
Q Consensus 38 ~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l-~~~iIs~DS~ 78 (455)
++...++.+|+|+||+||||||++..|++.+ +..+++.|..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~ 56 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDF 56 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGG
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcc
Confidence 3344667899999999999999999999988 7889999964
No 59
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.79 E-value=1.1e-05 Score=72.11 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=23.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++|+|.||+||||||+|..|+++++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987
No 60
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.79 E-value=1.1e-05 Score=75.32 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++++|+|+||+||||||+|..||+.++..+|+.|.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~ 40 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGD 40 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechH
Confidence 356789999999999999999999999988888774
No 61
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.78 E-value=1.2e-05 Score=73.23 Aligned_cols=38 Identities=32% Similarity=0.547 Sum_probs=33.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGL 84 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l 84 (455)
++|+|+||+||||||+|..||+.+|..+++.|. +|+.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~--~~~~~ 40 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGL--LYRAA 40 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH--HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceeccch--HHHhh
Confidence 389999999999999999999999999988885 45544
No 62
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.75 E-value=1.2e-05 Score=74.78 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=33.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.-..+|+|+|++||||||+|..|++.+|.++|++|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~ 46 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRI 46 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHH
Confidence 3457899999999999999999999999999999964
No 63
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.75 E-value=1.4e-05 Score=73.36 Aligned_cols=37 Identities=38% Similarity=0.469 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC--CcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN--GEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~--~~iIs~DS~ 78 (455)
.++.+|+|+||+|||||||++.|+..++ ..+++.|..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence 4678999999999999999999999988 677777753
No 64
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.75 E-value=1.5e-05 Score=70.23 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=30.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.|+|.|++||||||+|..|++.++..+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHH
Confidence 699999999999999999999999999988854
No 65
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.75 E-value=1.2e-05 Score=76.48 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=32.7
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceec
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYR 82 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr 82 (455)
.+++++|+|.||+||||+|.|..||+++|...|| ++.+.|
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs--tGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS--SGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC--HHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc--HHHHHH
Confidence 3678899999999999999999999999955544 444544
No 66
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.73 E-value=7.5e-06 Score=80.69 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCccceec
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN-----GEIISADSVQVYR 82 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS~qiYr 82 (455)
.++.+|+|+||+||||||+|..|++.++ ..+|++|++ |+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~--~r 46 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF--HR 46 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG--BS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh--hc
Confidence 4667999999999999999999999887 688899964 65
No 67
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.72 E-value=1.7e-05 Score=73.15 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=29.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.|+|+||+||||||+|..||++++..++++|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~ 33 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGD 33 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHH
Confidence 58999999999999999999999988888874
No 68
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.72 E-value=1.2e-05 Score=79.63 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=66.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccc-cccCcccccch-----
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLI-DILHPCEDYSV----- 115 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhli-d~~~~~~~~sv----- 115 (455)
..+++|+|+|| ||+||...|.+.++.. +.....++|.+|.+.|..|+.|||+ +.-.+......
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~--------~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE 171 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDK--------FGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIE 171 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTT--------EECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccc--------eeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEE
Confidence 35688999999 7999999999987522 2446678999999999999999999 65443322222
Q ss_pred -----hhHHHHHHHHHHHHHhcCCccEEec
Q 012837 116 -----GKFFEDARHATKDVLKKGRVPIVTG 140 (455)
Q Consensus 116 -----~~f~~~a~~~i~~I~~~gk~pIvvG 140 (455)
+.|+....+.|++++++|+.+|+..
T Consensus 172 ~~~~~g~~YGt~~~~V~~~~~~G~~vildi 201 (295)
T 1kjw_A 172 AGQYNSHLYGTSVQSVREVAEQGKHCILDV 201 (295)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEECC
T ss_pred EEEEcCcEeeeeHHHHHHHHhcCCeEEEEe
Confidence 3345566788999999999888763
No 69
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.72 E-value=1.6e-05 Score=72.65 Aligned_cols=32 Identities=34% Similarity=0.515 Sum_probs=29.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
++|+|+||+||||||++..||+ +|..++++|.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 4799999999999999999999 9999998884
No 70
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.72 E-value=1.8e-05 Score=73.03 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=29.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.|+|+||+||||||+|..||++++..++++|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~ 33 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGD 33 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHH
Confidence 58999999999999999999999988888874
No 71
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.71 E-value=2e-05 Score=75.21 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++++|+|+||+||||||+|..|+++++..+|++|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~ 62 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGD 62 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHH
Confidence 467899999999999999999999999988888774
No 72
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.70 E-value=1.3e-05 Score=74.51 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+++.|+|+||+||||||++..||+.++..+++.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~ 38 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGD 38 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHH
Confidence 45789999999999999999999999976666553
No 73
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.70 E-value=1.7e-05 Score=73.86 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.++..|+|.||+||||||+|..||+.++..+|+.|.+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~l 39 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDM 39 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHH
Confidence 3557899999999999999999999999988888753
No 74
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.67 E-value=2.2e-05 Score=76.78 Aligned_cols=35 Identities=34% Similarity=0.492 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++.+|+|+|++||||||+|..|+ .+|..+|++|.+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~ 108 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHL 108 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHH
Confidence 46789999999999999999999 689999999864
No 75
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.67 E-value=2.5e-05 Score=72.32 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++.+|+|+|++||||||++..||+ +|..+|++|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHH
Confidence 467999999999999999999998 99899888853
No 76
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.67 E-value=2.1e-05 Score=71.99 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=29.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.+|+|+||+||||||++..||+ +|..++++|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHH
Confidence 5899999999999999999998 89889888854
No 77
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.66 E-value=4.7e-05 Score=72.48 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
+++.+|+|.|+.|||||++|..||+++|.+++..|-
T Consensus 12 ~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~ 47 (223)
T 3hdt_A 12 NKNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDI 47 (223)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHH
Confidence 346799999999999999999999999988877553
No 78
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.64 E-value=5.4e-05 Score=69.89 Aligned_cols=28 Identities=36% Similarity=0.606 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++.+++|+||+|||||||++.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6788999999999999999999999875
No 79
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.63 E-value=3.2e-05 Score=69.28 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=28.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHc---CCcEEEcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRL---NGEIISAD 76 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~D 76 (455)
++|+|.|++||||||+|..|++++ |..++++|
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 379999999999999999999998 77787766
No 80
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.62 E-value=3.5e-05 Score=69.33 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=28.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
.++.+|+|+||+|||||||++.||..++...|..|
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 56789999999999999999999997654433333
No 81
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.61 E-value=3.2e-05 Score=73.87 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=40.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.|-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|+++| +.|.++.
T Consensus 20 ~L~~isl~i---~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-----~p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 20 ALKNVNLNI---KEGEFVSIMGPSGSGKSTMLNIIGCLD-----KPTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTSS-----CCSEEEEEETTEECT
T ss_pred eEEeeeEEE---cCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCceEEEECCEEcc
Confidence 455799999 888999999999999999999998754 4677777 5666654
No 82
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.61 E-value=2.5e-05 Score=72.06 Aligned_cols=40 Identities=35% Similarity=0.552 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGL 84 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l 84 (455)
++.+|+|+|++||||||++..||+.+|..+++.|. +|+.+
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~--~~~~~ 41 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGA--MYRAL 41 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH--HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCCh--HHHHH
Confidence 45789999999999999999999999988888875 46653
No 83
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.60 E-value=2.9e-05 Score=69.24 Aligned_cols=31 Identities=39% Similarity=0.700 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEE
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEII 73 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iI 73 (455)
++++|+|.|++||||||+|..||+.++..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5679999999999999999999999998776
No 84
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.59 E-value=4.6e-05 Score=75.64 Aligned_cols=87 Identities=13% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccC-ccccc-------
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILH-PCEDY------- 113 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~-~~~~~------- 113 (455)
..+++|+|+|| ||+||...|.+.++..| ...++++|.+|.+.|..|+.+||++..+ +....
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f--------~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE 166 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDKF--------GSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIE 166 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTE--------ECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhhc--------cccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEE
Confidence 35688999999 59999999999987433 4467889999999999999999994322 11111
Q ss_pred ---chhhHHHHHHHHHHHHHhcCCccEEe
Q 012837 114 ---SVGKFFEDARHATKDVLKKGRVPIVT 139 (455)
Q Consensus 114 ---sv~~f~~~a~~~i~~I~~~gk~pIvv 139 (455)
-.+.|+....+.+++++++|+.+|+.
T Consensus 167 ~a~~~gn~YGT~~~~V~~~~~~gk~viLd 195 (292)
T 3tvt_A 167 AGQYNDNLYGTSVASVREVAEKGKHCILD 195 (292)
T ss_dssp EEEETTEEEEEEHHHHHHHHHHTCEEEEC
T ss_pred EEEEccceeEEehHHHHHHHHcCCcEEEe
Confidence 12345556678889999999988874
No 85
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.59 E-value=3.2e-05 Score=75.40 Aligned_cols=52 Identities=29% Similarity=0.374 Sum_probs=42.1
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
..|-++||++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++..
T Consensus 25 ~vL~~vsl~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl~-----~p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 25 ALINDVSLHI---ASGEMVAIIGPNGAGKSTLLRLLTGYL-----SPSHGECHLLGQNLNS 77 (266)
T ss_dssp EEEEEEEEEE---ETTCEEEEECCTTSCHHHHHHHHTSSS-----CCSSCEEEETTEETTT
T ss_pred eEEEeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCCcEEEECCEECCc
Confidence 4455699999 788999999999999999999999754 3677777 56766643
No 86
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.58 E-value=3e-05 Score=69.76 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=30.5
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
+||++ .++.+++|+||+|||||||++.+.. +..+++.|
T Consensus 2 vsl~i---~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d 39 (171)
T 4gp7_A 2 MKLTI---PELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSD 39 (171)
T ss_dssp EEEEE---ESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHH
T ss_pred ccccC---CCCEEEEEECCCCCCHHHHHHHHcc--CCeEEccH
Confidence 68888 7889999999999999999998652 34455555
No 87
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.58 E-value=5.4e-05 Score=72.46 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=40.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+. .+++.| +.|.++.
T Consensus 17 vl~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 17 ILRDISFEA---QPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPID 67 (243)
T ss_dssp SEEEEEEEE---CTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEEST
T ss_pred eEEEeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhh
Confidence 355699999 7889999999999999999999987553 567776 5666653
No 88
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.57 E-value=3.8e-05 Score=74.51 Aligned_cols=49 Identities=24% Similarity=0.273 Sum_probs=40.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ .++.+++|+||+|||||||.+.|+..+ ..|+++| +.|.++
T Consensus 21 vl~~vsl~i---~~Ge~~~liG~nGsGKSTLlk~l~Gl~-----~p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 21 VLKGVSLQA---RAGDVISIIGSSGSGKSTFLRCINFLE-----KPSEGAIIVNGQNI 70 (262)
T ss_dssp EEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHTTSS-----CCSEEEEEETTEEC
T ss_pred EEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCCcEEEECCEEc
Confidence 355699999 888999999999999999999998754 4677777 566665
No 89
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.56 E-value=4.3e-05 Score=69.33 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc-CCcEEEc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL-NGEIISA 75 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l-~~~iIs~ 75 (455)
++++|+|.||+||||||++..||+.+ +..+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 57899999999999999999999998 4556553
No 90
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.56 E-value=4.4e-05 Score=71.84 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
++..|+|.|++||||||+|..||++++..+|+.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~ 49 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGD 49 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHH
Confidence 45689999999999999999999999988887764
No 91
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.56 E-value=2e-05 Score=72.06 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
+++++|+|.|++||||||++..||++++...+++|
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 45789999999999999999999999875544443
No 92
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.54 E-value=2.7e-05 Score=73.19 Aligned_cols=36 Identities=39% Similarity=0.469 Sum_probs=29.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceec
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYR 82 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr 82 (455)
++|+|.||+||||+|.|..||+++|...||. +.++|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~ist--GdllR 36 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHIST--GDILR 36 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEH--HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcH--HHHHH
Confidence 3789999999999999999999999665554 44555
No 93
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.54 E-value=4.9e-05 Score=69.74 Aligned_cols=28 Identities=43% Similarity=0.560 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++.+|+|+||+|||||||++.||..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999983
No 94
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.53 E-value=3.6e-05 Score=72.91 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
++.+|+|+||+|||||||++.||+.+|...++.|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G 59 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG 59 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 5679999999999999999999999985544433
No 95
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.53 E-value=4.7e-05 Score=74.18 Aligned_cols=50 Identities=24% Similarity=0.417 Sum_probs=40.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-++||++ .++.+++|+||+|||||||.+.|+..+ ..|+++| +.|.++.
T Consensus 39 vL~~vsl~i---~~Gei~~liG~NGsGKSTLlk~l~Gl~-----~p~~G~I~~~g~~i~ 89 (263)
T 2olj_A 39 VLKGINVHI---REGEVVVVIGPSGSGKSTFLRCLNLLE-----DFDEGEIIIDGINLK 89 (263)
T ss_dssp EEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHTTSS-----CCSEEEEEETTEESS
T ss_pred EEEeeEEEE---cCCCEEEEEcCCCCcHHHHHHHHHcCC-----CCCCcEEEECCEECC
Confidence 355699999 788999999999999999999998754 4677877 5676653
No 96
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.53 E-value=4.4e-05 Score=70.67 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=29.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.|+|.||+||||||+|..||+.++..+|+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~ 33 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGD 33 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHH
Confidence 58999999999999999999999988888874
No 97
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.52 E-value=4e-05 Score=76.45 Aligned_cols=50 Identities=30% Similarity=0.399 Sum_probs=40.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-|-++||++ .++.+++|+||+|||||||.+.|+..+. .++++| +.|.++.
T Consensus 69 vL~~isl~i---~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~G~~i~ 119 (306)
T 3nh6_A 69 TLQDVSFTV---MPGQTLALVGPSGAGKSTILRLLFRFYD-----ISSGCIRIDGQDIS 119 (306)
T ss_dssp EEEEEEEEE---CTTCEEEEESSSCHHHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred eeeeeeEEE---cCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCcEEEECCEEcc
Confidence 355699999 8889999999999999999999987553 667776 5666664
No 98
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.52 E-value=9.5e-05 Score=70.95 Aligned_cols=48 Identities=31% Similarity=0.417 Sum_probs=39.5
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
+-++||++ .+ .+++|+||+|||||||.+.|+..+ ..|+++| +.|.++.
T Consensus 15 l~~isl~i---~~-e~~~liG~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 15 RLNVDFEM---GR-DYCVLLGPTGAGKSVFLELIAGIV-----KPDRGEVRLNGADIT 63 (240)
T ss_dssp EEEEEEEE---CS-SEEEEECCTTSSHHHHHHHHHTSS-----CCSEEEEEETTEECT
T ss_pred EeeeEEEE---CC-EEEEEECCCCCCHHHHHHHHhCCC-----CCCceEEEECCEECC
Confidence 66799999 67 899999999999999999999754 3677776 5666653
No 99
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.51 E-value=4.7e-05 Score=73.29 Aligned_cols=50 Identities=32% Similarity=0.384 Sum_probs=40.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+. .+++.| +.|.++.
T Consensus 24 vl~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 24 ILDNINLSI---KQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLA 74 (247)
T ss_dssp EEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhh
Confidence 355699999 7889999999999999999999987553 567776 5566553
No 100
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.51 E-value=4.3e-05 Score=72.37 Aligned_cols=50 Identities=32% Similarity=0.362 Sum_probs=40.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|++.| +.|.++.
T Consensus 19 ~l~~vsl~i---~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 19 ILKGISLSV---KKGEFVSIIGASGSGKSTLLYILGLLD-----APTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEE---ETTCEEEEEECTTSCHHHHHHHHTTSS-----CCSEEEEEETTEECC
T ss_pred eEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCceEEEECCEECC
Confidence 455699999 788999999999999999999998754 3677776 5566553
No 101
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=0.00021 Score=75.47 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
..+.++|.||+|+|||++|..+|+.++..++..+...+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 34689999999999999999999999999988876543
No 102
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.51 E-value=4.5e-05 Score=70.48 Aligned_cols=36 Identities=33% Similarity=0.592 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN-----GEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS 77 (455)
.++.+|+|+||+|||||||++.|+..++ ..+|+.|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 5678999999999999999999999875 34566664
No 103
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.50 E-value=5e-05 Score=71.58 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=34.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceeccc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGL 84 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l 84 (455)
.++.+|+|+|++||||||++..||+.+|..+++.|. +|+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~--~~~~~ 54 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA--MYRAA 54 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH--HHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCC--eeEcc
Confidence 456799999999999999999999999988877774 56653
No 104
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.49 E-value=7.3e-05 Score=67.84 Aligned_cols=29 Identities=34% Similarity=0.385 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
+++++|+|.||+||||||+|..||++++.
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 35689999999999999999999999985
No 105
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.49 E-value=7e-05 Score=67.11 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc---CCcEEEcCccc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL---NGEIISADSVQ 79 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~DS~q 79 (455)
+++.+|+|+|++||||||++..|++.+ |.+++..|+-.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 467899999999999999999999988 77787766533
No 106
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.49 E-value=0.00016 Score=69.35 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH---cCCcEE--EcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR---LNGEII--SAD 76 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~---l~~~iI--s~D 76 (455)
++++|+|+|++||||||+|..|++. +|..++ +.|
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 4579999999999999999999998 677776 444
No 107
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.49 E-value=4.9e-05 Score=74.53 Aligned_cols=49 Identities=27% Similarity=0.364 Sum_probs=40.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.|-++||++ .++.+++|+||+|||||||.+.|+..+ ..++++| +.|.++
T Consensus 23 ~L~~isl~i---~~Ge~~~iiGpnGsGKSTLl~~l~Gl~-----~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 23 ALKGINMNI---KRGEVTAILGGNGVGKSTLFQNFNGIL-----KPSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEE---ETTSEEEEECCTTSSHHHHHHHHTTSS-----CCSEEEEEETTEEC
T ss_pred EEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHcCC-----CCCCeEEEECCEEC
Confidence 455799999 788999999999999999999998754 3677777 566665
No 108
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.47 E-value=0.00015 Score=66.90 Aligned_cols=28 Identities=36% Similarity=0.549 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++.+|+|.|++||||||++..|++.++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5678999999999999999999999886
No 109
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.46 E-value=6.5e-05 Score=67.82 Aligned_cols=34 Identities=38% Similarity=0.648 Sum_probs=28.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCC-cEEEcCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNG-EIISADS 77 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~-~iIs~DS 77 (455)
+.+++|+||+|||||||++.|+..+++ .+++.|.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccc
Confidence 468999999999999999999998876 4555553
No 110
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.46 E-value=6.2e-05 Score=70.48 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=29.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.|+|.||+||||||+|..||+.++..+|+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd 33 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGG 33 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHH
Confidence 68999999999999999999999988888764
No 111
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.45 E-value=5.3e-05 Score=72.41 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=35.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
-+-++||++ .++.+++|+||+|||||||.+.|+..+ ..+++.|
T Consensus 20 vl~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----~p~~G~I 62 (237)
T 2cbz_A 20 TLNGITFSI---PEGALVAVVGQVGCGKSSLLSALLAEM-----DKVEGHV 62 (237)
T ss_dssp SEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTCS-----EEEEEEE
T ss_pred eeeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCCceE
Confidence 355699999 888999999999999999999998754 3456665
No 112
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.45 E-value=6.6e-05 Score=73.69 Aligned_cols=49 Identities=29% Similarity=0.182 Sum_probs=39.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+ ..|++.| +.|.++
T Consensus 36 vL~~isl~i---~~Ge~~~liG~NGsGKSTLlk~l~Gl~-----~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 36 ILKKISWQI---AKGDKWILYGLNGAGKTTLLNILNAYE-----PATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEE---ETTCEEEEECCTTSSHHHHHHHHTTSS-----CCSEEEEEETTBCC
T ss_pred EEEeeeEEE---cCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCCeEEEECCEEc
Confidence 345699999 788999999999999999999998755 3677776 556555
No 113
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.45 E-value=6.2e-05 Score=71.49 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=36.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+. .++++|
T Consensus 23 il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i 65 (229)
T 2pze_A 23 VLKDINFKI---ERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKI 65 (229)
T ss_dssp SEEEEEEEE---ETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEE
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEE
Confidence 455699999 7889999999999999999999987553 566666
No 114
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.45 E-value=0.00015 Score=73.86 Aligned_cols=51 Identities=29% Similarity=0.302 Sum_probs=41.8
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
..|-++||++ .++.+++|+||+|||||||.+.||..+ ..|++.| +.|.++.
T Consensus 18 ~~L~~vsl~i---~~Ge~~~llGpsGsGKSTLLr~iaGl~-----~p~~G~I~i~G~~i~ 69 (359)
T 3fvq_A 18 PVLNDISLSL---DPGEILFIIGASGCGKTTLLRCLAGFE-----QPDSGEISLSGKTIF 69 (359)
T ss_dssp EEEEEEEEEE---CTTCEEEEEESTTSSHHHHHHHHHTSS-----CCSEEEEEETTEEEE
T ss_pred EEEEeeEEEE---cCCCEEEEECCCCchHHHHHHHHhcCC-----CCCCcEEEECCEECc
Confidence 3455699999 788999999999999999999999854 4677887 5677663
No 115
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.44 E-value=6.3e-05 Score=71.94 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=39.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|++.| +.|.++
T Consensus 21 vl~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 21 AIKGIDLKV---PRGQIVTLIGANGAGKTTTLSAIAGLV-----RAQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHTTSS-----CCSEEEEEETTEEC
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCceEEECCEEC
Confidence 455699999 788999999999999999999998754 3677776 456555
No 116
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.44 E-value=7.8e-05 Score=67.26 Aligned_cols=29 Identities=45% Similarity=0.633 Sum_probs=25.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEE
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEII 73 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iI 73 (455)
++|+|.|++||||||++..||+.++..++
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 37999999999999999999999996553
No 117
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.43 E-value=5.9e-05 Score=72.86 Aligned_cols=49 Identities=41% Similarity=0.504 Sum_probs=40.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+ ..|++.| +.|.++
T Consensus 22 vl~~vsl~i---~~Ge~~~liG~nGsGKSTLlk~l~Gl~-----~p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 22 ALDGVSISV---NKGDVTLIIGPNGSGKSTLINVITGFL-----KADEGRVYFENKDI 71 (257)
T ss_dssp EEEEECCEE---ETTCEEEEECSTTSSHHHHHHHHTTSS-----CCSEEEEEETTEEC
T ss_pred eEeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCcEEEECCEEC
Confidence 455699999 788999999999999999999998754 4677777 556555
No 118
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.41 E-value=6.6e-05 Score=72.74 Aligned_cols=33 Identities=33% Similarity=0.370 Sum_probs=29.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHc-CCcEEEcC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRL-NGEIISAD 76 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l-~~~iIs~D 76 (455)
+++|+|+||+||||||+|..|++++ +..+|+.|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 4689999999999999999999985 77788888
No 119
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.41 E-value=8.1e-05 Score=72.61 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=39.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-|-.+||++ .++.+++|+||+|||||||.+.|+..+. .+++.| +.|.++
T Consensus 34 vl~~vsl~i---~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i 83 (271)
T 2ixe_A 34 VLQGLTFTL---YPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEG
T ss_pred eeEeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEc
Confidence 355699999 8889999999999999999999987553 567776 456555
No 120
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.41 E-value=6.5e-05 Score=70.99 Aligned_cols=49 Identities=27% Similarity=0.464 Sum_probs=39.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|++.| +.|.++
T Consensus 24 il~~vsl~i---~~Ge~~~iiG~NGsGKSTLlk~l~Gl~-----~p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 24 VLERITMTI---EKGNVVNFHGPNGIGKTTLLKTISTYL-----KPLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEE---ETTCCEEEECCTTSSHHHHHHHHTTSS-----CCSEEEEEETTEEG
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCCeEEEECCEEh
Confidence 344699999 788999999999999999999998754 3677776 455554
No 121
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.40 E-value=8.6e-05 Score=72.14 Aligned_cols=49 Identities=29% Similarity=0.382 Sum_probs=39.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..++++| +.|.++
T Consensus 22 vl~~vsl~i---~~Ge~~~liG~nGsGKSTLl~~i~Gl~-----~p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 22 ALENVSLVI---NEGECLLVAGNTGSGKSTLLQIVAGLI-----EPTSGDVLYDGERK 71 (266)
T ss_dssp EEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTSS-----CCSEEEEEETTEEC
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCCcEEEECCEEC
Confidence 355699999 888999999999999999999998754 3677776 455554
No 122
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.39 E-value=4.1e-05 Score=69.92 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGE 71 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~ 71 (455)
+++++|+|.|++||||||++..||++++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 457899999999999999999999988633
No 123
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.38 E-value=9.1e-05 Score=71.79 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=39.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..+++.| +.|.++
T Consensus 30 vl~~vsl~i---~~Gei~~l~G~NGsGKSTLlk~l~Gl~-----~p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 30 ILKGISFEI---EEGEIFGLIGPNGAGKTTTLRIISTLI-----KPSSGIVTVFGKNV 79 (256)
T ss_dssp EEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHTTSS-----CCSEEEEEETTEET
T ss_pred EEEeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhcCC-----CCCceEEEECCEEC
Confidence 455699999 788999999999999999999998754 3677776 456555
No 124
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.35 E-value=0.00033 Score=62.04 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
++..++|.||+|+|||+|+..++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999877
No 125
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.35 E-value=0.00014 Score=74.33 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=42.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccC
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSA 89 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Ta 89 (455)
.|-++||++ .++.+++|+||+|||||||.+.|+..+ ..|+++| +.|.++...
T Consensus 43 aL~~vsl~i---~~Gei~~IiGpnGaGKSTLlr~i~GL~-----~p~~G~I~i~G~~i~~~ 95 (366)
T 3tui_C 43 ALNNVSLHV---PAGQIYGVIGASGAGKSTLIRCVNLLE-----RPTEGSVLVDGQELTTL 95 (366)
T ss_dssp EEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHHTSS-----CCSEEEEEETTEECSSC
T ss_pred EEEeeEEEE---cCCCEEEEEcCCCchHHHHHHHHhcCC-----CCCceEEEECCEECCcC
Confidence 355699999 888999999999999999999999754 4678887 577776543
No 126
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.34 E-value=0.00013 Score=65.72 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=25.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHc---CCcEEEc
Q 012837 46 VIVISGPTGAGKSQLALELAKRL---NGEIISA 75 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~ 75 (455)
+|+|.||+||||||++..|++.+ |..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 79999999999999999999998 7666543
No 127
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.34 E-value=9.8e-05 Score=71.32 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=37.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+ ..|++.|+
T Consensus 20 vl~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~I~ 63 (253)
T 2nq2_C 20 LFQQLNFDL---NKGDILAVLGQNGCGKSTLLDLLLGIH-----RPIQGKIE 63 (253)
T ss_dssp EEEEEEEEE---ETTCEEEEECCSSSSHHHHHHHHTTSS-----CCSEEEEE
T ss_pred EEEEEEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCC-----CCCCcEEE
Confidence 355699999 788999999999999999999999755 36777775
No 128
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.33 E-value=0.0001 Score=70.91 Aligned_cols=52 Identities=31% Similarity=0.334 Sum_probs=40.2
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-++||++ .++.+++|+||+|||||||.+.|+... .+..|++.| +.|.++.
T Consensus 18 vl~~vsl~i---~~Ge~~~l~G~nGsGKSTLlk~l~Gl~---~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 18 ILKGVNLVV---PKGEVHALMGPNGAGKSTLGKILAGDP---EYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHHTCT---TCEEEEEEEEETTEECT
T ss_pred EEeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCceEEEECCEECC
Confidence 355699999 788999999999999999999999741 134567776 5566653
No 129
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.32 E-value=0.00014 Score=74.63 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=42.2
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
..|-++||++ .++.+++|+||+|||||||.+.||..+ ..|++.| +.|.++..
T Consensus 17 ~~L~~vsl~i---~~Ge~~~llGpsGsGKSTLLr~iaGl~-----~p~~G~I~i~G~~~~~ 69 (381)
T 3rlf_A 17 VVSKDINLDI---HEGEFVVFVGPSGCGKSTLLRMIAGLE-----TITSGDLFIGEKRMND 69 (381)
T ss_dssp EEEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHHTSS-----CCSEEEEEETTEECTT
T ss_pred EEEeeeEEEE---CCCCEEEEEcCCCchHHHHHHHHHcCC-----CCCCeEEEECCEECCC
Confidence 3455799999 888999999999999999999999755 4678887 46666643
No 130
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.32 E-value=0.00015 Score=73.85 Aligned_cols=50 Identities=24% Similarity=0.382 Sum_probs=41.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-.+||++ .++.+++|+||+|||||||.+.||..+ ..|+++| +.|.++.
T Consensus 18 vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~-----~p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 18 AVDGVSFEV---KDGEFVALLGPSGCGKTTTLLMLAGIY-----KPTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHHTSS-----CCSEEEEEETTEECT
T ss_pred EEeeeEEEE---cCCCEEEEEcCCCchHHHHHHHHHCCC-----CCCccEEEECCEECC
Confidence 355699999 788999999999999999999999754 4678887 5666664
No 131
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.31 E-value=0.00014 Score=71.85 Aligned_cols=37 Identities=32% Similarity=0.418 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC-------CcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN-------GEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~-------~~iIs~DS~ 78 (455)
.++.+|+|+||+|||||||+..|+..++ ..+|++|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5678999999999999999999999876 446666753
No 132
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.28 E-value=0.00017 Score=73.51 Aligned_cols=50 Identities=24% Similarity=0.413 Sum_probs=41.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||.+.||..+ ..|++.| +.|.++.
T Consensus 18 vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~-----~p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 18 ALNNINLKI---KDGEFMALLGPSGSGKSTLLYTIAGIY-----KPTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHHTSS-----CCSEEEEEETTEECT
T ss_pred EEEeeEEEE---CCCCEEEEECCCCchHHHHHHHHhcCC-----CCCceEEEECCEECC
Confidence 455699999 788999999999999999999999754 4677777 5666664
No 133
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.28 E-value=2.5e-05 Score=72.41 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=50.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccc-hhhHHHHHHH
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYS-VGKFFEDARH 124 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~s-v~~f~~~a~~ 124 (455)
+|.|.|++|||||++|..||.. +.++++.++.+.+ +.+-++.|.+|..+- |. .+. +.... +..+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~----------d~e~~~rI~~h~~~R--~~-~w~tiE~p~-~l~~ 65 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQVLYIATSQIL----------DDEMAARIQHHKDGR--PA-HWRTAECWR-HLDT 65 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC----------------CHHHHHHHTS--CT-TEEEECCSS-CGGG
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCC----------CHHHHHHHHHHHhcC--CC-CcEEEEcHh-hHHH
Confidence 3789999999999999999987 7666665554422 344455566665542 11 111 11111 1111
Q ss_pred HHHHHHhcCCccEEechhhHHHHHHHhC
Q 012837 125 ATKDVLKKGRVPIVTGGTGLYLRWFIYG 152 (455)
Q Consensus 125 ~i~~I~~~gk~pIvvGGTg~Yl~aLl~g 152 (455)
.+......+ -+||+...++|+..+++.
T Consensus 66 ~l~~~~~~~-~~VLvDclt~wl~n~l~~ 92 (180)
T 1c9k_A 66 LITADLAPD-DAILLECITTMVTNLLFA 92 (180)
T ss_dssp TSCTTSCTT-CEEEEECHHHHHHHHHHH
T ss_pred HHHhhcccC-CeEEEcCHHHHHHHHHhh
Confidence 122221112 378888888888877753
No 134
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.27 E-value=0.00017 Score=73.48 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=40.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||.+.||..+ ..|+++| +.|.++.
T Consensus 30 vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~-----~p~~G~I~i~g~~i~ 80 (355)
T 1z47_A 30 SVRGVSFQI---REGEMVGLLGPSGSGKTTILRLIAGLE-----RPTKGDVWIGGKRVT 80 (355)
T ss_dssp CEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHHTSS-----CCSEEEEEETTEECT
T ss_pred EEeeeEEEE---CCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCccEEEECCEECC
Confidence 355699999 788999999999999999999999754 4677877 5566654
No 135
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.27 E-value=0.00011 Score=73.43 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=35.0
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEE
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEII 73 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iI 73 (455)
|-.+++++ +++.+++|+||+|||||||++.|+..+.|.|+
T Consensus 116 L~~vsl~i---~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~ 155 (305)
T 2v9p_A 116 LKLWLKGI---PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL 155 (305)
T ss_dssp HHHHHHTC---TTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred hccceEEe---cCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence 44588988 78899999999999999999999998877664
No 136
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.25 E-value=0.0002 Score=73.32 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=40.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||.+.||..+ ..|+++| +.|.++.
T Consensus 26 vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~-----~p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 26 AVNKLNLTI---KDGEFLVLLGPSGCGKTTTLRMIAGLE-----EPTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHHTSS-----CCSEEEEEETTEECT
T ss_pred EEeeeEEEE---CCCCEEEEECCCCChHHHHHHHHHcCC-----CCCceEEEECCEECC
Confidence 455699999 788999999999999999999999754 4677777 4566653
No 137
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.24 E-value=0.00014 Score=65.56 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+++.+|+|.|++||||||++..||+.++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999885
No 138
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.23 E-value=0.00021 Score=71.72 Aligned_cols=37 Identities=32% Similarity=0.395 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC-------CcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN-------GEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~-------~~iIs~DS~ 78 (455)
.++.+|+|+||+|||||||+..|+..++ ..+++.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4567999999999999999999998875 345677754
No 139
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.20 E-value=0.00015 Score=71.60 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=35.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.+-.+||++ .++.+++|+||+|||||||.+.|+..+. .++++|
T Consensus 53 vl~~isl~i---~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I 95 (290)
T 2bbs_A 53 VLKDINFKI---ERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKI 95 (290)
T ss_dssp SEEEEEEEE---CTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEE
T ss_pred EEEeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEE
Confidence 345699999 7889999999999999999999987553 456665
No 140
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.19 E-value=0.00018 Score=73.10 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=40.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||.+.||..+ ..|+++| +.|.++.
T Consensus 20 vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~-----~p~~G~I~i~g~~i~ 70 (353)
T 1oxx_K 20 ALDNVNINI---ENGERFGILGPSGAGKTTFMRIIAGLD-----VPSTGELYFDDRLVA 70 (353)
T ss_dssp EEEEEEEEE---CTTCEEEEECSCHHHHHHHHHHHHTSS-----CCSEEEEEETTEEEE
T ss_pred eEeceEEEE---CCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEECCEECc
Confidence 455799999 788999999999999999999999754 4677777 4566654
No 141
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.19 E-value=0.00019 Score=72.83 Aligned_cols=50 Identities=34% Similarity=0.380 Sum_probs=40.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+.++||++ .++.+++|+||+|||||||.+.||..+ ..|+++| +.|.++.
T Consensus 15 ~l~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~-----~p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 15 SLDNLSLKV---ESGEYFVILGPTGAGKTLFLELIAGFH-----VPDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEE---CTTCEEEEECCCTHHHHHHHHHHHTSS-----CCSEEEEEETTEECT
T ss_pred EEeeeEEEE---cCCCEEEEECCCCccHHHHHHHHHcCC-----CCCCcEEEECCEECC
Confidence 455699999 788999999999999999999999754 4677877 4566653
No 142
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.15 E-value=0.00024 Score=69.55 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=33.0
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
.+.++.+.|.||+|+|||+||+.||+.++..++..+...
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~ 71 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGE 71 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHH
Confidence 345678889999999999999999999998888776543
No 143
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.15 E-value=0.00024 Score=72.71 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=40.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||.+.||..+ ..|++.| +.|.++.
T Consensus 18 vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~-----~p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 18 AVREMSLEV---KDGEFMILLGPSGCGKTTTLRMIAGLE-----EPSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHHTSS-----CCSEEEEEETTEEEE
T ss_pred EEeeeEEEE---cCCCEEEEECCCCcHHHHHHHHHHcCC-----CCCccEEEECCEECc
Confidence 355699999 788999999999999999999999754 4677777 4566654
No 144
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.15 E-value=0.00026 Score=69.81 Aligned_cols=37 Identities=32% Similarity=0.385 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCC-------cEE-EcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNG-------EII-SADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~-------~iI-s~DS~ 78 (455)
.++.+|+|+||+|||||||+..|+..++. .++ +.|+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 46789999999999999999999998752 334 78875
No 145
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.14 E-value=0.0002 Score=69.13 Aligned_cols=48 Identities=29% Similarity=0.466 Sum_probs=37.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+..+||++ .++.+++|+||+|||||||.+.|+..+. .+ +.| +.|.++
T Consensus 15 vl~~vsl~i---~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~ 63 (249)
T 2qi9_C 15 RLGPLSGEV---RAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPL 63 (249)
T ss_dssp TEEEEEEEE---ETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEG
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEEC
Confidence 455699999 7889999999999999999999987654 44 555 445544
No 146
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.13 E-value=0.00032 Score=64.46 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+|+|+||+||||||++..|+..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999876
No 147
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.13 E-value=0.00022 Score=64.22 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.8
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+..+||++ .++.+++|.||+|||||||.+.|+..+
T Consensus 22 ~l~~vsl~i---~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 22 AEILLKLHT---EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHCC---SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcccccc---CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344588998 788899999999999999999999976
No 148
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.12 E-value=0.0002 Score=69.67 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=38.4
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-.+||++ . +.+++|+||+|||||||.+.|+.. + .|++.| +.|.++.
T Consensus 20 il~~vsl~i---~-Ge~~~i~G~NGsGKSTLlk~l~Gl-----~-p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 20 SLENINLEV---N-GEKVIILGPNGSGKTTLLRAISGL-----L-PYSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEE---C-SSEEEEECCTTSSHHHHHHHHTTS-----S-CCEEEEEETTEEGG
T ss_pred eEEeeeEEE---C-CEEEEEECCCCCCHHHHHHHHhCC-----C-CCCcEEEECCEECc
Confidence 345699999 7 899999999999999999999863 3 577777 4566553
No 149
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.10 E-value=0.00032 Score=68.18 Aligned_cols=52 Identities=35% Similarity=0.447 Sum_probs=40.0
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.+-++||++ .++.+++|+||+|||||||.+.|+..+. +..+++.| +.|.++.
T Consensus 35 vl~~vsl~i---~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~---~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 35 ILRGLSLDV---HPGEVHAIMGPNGSGKSTLSATLAGRED---YEVTGGTVEFKGKDLL 87 (267)
T ss_dssp EEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHHTCTT---CEEEEEEEEETTEEGG
T ss_pred EEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECC
Confidence 345699999 7889999999999999999999997521 23566666 5566654
No 150
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.09 E-value=0.00026 Score=72.92 Aligned_cols=50 Identities=26% Similarity=0.315 Sum_probs=39.9
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
.|-++||++ .++.+++|+||+|||||||.+.||..+ . ++++| +.|.++..
T Consensus 36 ~L~~vsl~i---~~Ge~~~llGpsGsGKSTLLr~iaGl~-----~-~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 36 ILENISFSI---SPGQRVGLLGRTGSGKSTLLSAFLRLL-----N-TEGEIQIDGVSWDS 86 (390)
T ss_dssp SEEEEEEEE---CTTCEEEEEESTTSSHHHHHHHHHTCS-----E-EEEEEEESSCBTTS
T ss_pred EeeceeEEE---cCCCEEEEECCCCChHHHHHHHHhCCC-----C-CCeEEEECCEECCc
Confidence 455699999 888999999999999999999999643 3 56776 46666543
No 151
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.08 E-value=0.00029 Score=68.20 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=37.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ .++.+++|+||+|||||||.+.|+..+. .++.| +.|.++
T Consensus 35 vl~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~------~~G~I~i~g~~i 83 (260)
T 2ghi_A 35 TLKSINFFI---PSGTTCALVGHTGSGKSTIAKLLYRFYD------AEGDIKIGGKNV 83 (260)
T ss_dssp SEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTSSC------CEEEEEETTEEG
T ss_pred eeEeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhccCC------CCeEEEECCEEh
Confidence 355699999 7889999999999999999999997543 14555 456554
No 152
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.07 E-value=0.00046 Score=65.30 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=29.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
++-++|.||+|+|||+||+.||..++..++..+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~ 78 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 78 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH
Confidence 3468999999999999999999999888776664
No 153
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.06 E-value=0.00048 Score=65.22 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=27.8
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+++.....++++|+|.||+||||||++..|++.++
T Consensus 16 ~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 16 ENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp ----CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 444443335788999999999999999999999986
No 154
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.05 E-value=0.00037 Score=74.77 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=40.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-++|+++ +++..++|+||+|||||||.+.|+..+. .++++| +.|.++.
T Consensus 358 ~l~~i~l~i---~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 358 ALSHVSFSI---PQGKTVALVGRSGSGKSTIANLFTRFYD-----VDSGSICLDGHDVR 408 (582)
T ss_pred ccccceEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEhh
Confidence 355699999 7889999999999999999999998553 667776 4566553
No 155
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.01 E-value=0.00037 Score=65.88 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=31.4
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
+..+++++ .++ ++|.||+|||||+|++.||..++..++..+
T Consensus 41 ~~~~~~~~---~~g--~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 41 FHEMGARI---PKG--VLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp HHHTTCCC---CSE--EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHcCCCC---CCe--EEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 33466665 333 999999999999999999998876555544
No 156
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.98 E-value=0.00037 Score=74.73 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=39.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
-+-++||++ +++..++|+||+|||||||.+.|+..+. .+++.| +.|.++
T Consensus 358 ~l~~v~~~i---~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~ 407 (582)
T 3b60_A 358 ALRNINLKI---PAGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHDL 407 (582)
T ss_dssp SEEEEEEEE---CTTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEET
T ss_pred cccceeEEE---cCCCEEEEECCCCCCHHHHHHHHhhccC-----CCCCeEEECCEEc
Confidence 355699999 7889999999999999999999998664 566666 456555
No 157
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.98 E-value=0.00031 Score=62.92 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++..++|.||+|+|||+|+..+|..+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999876
No 158
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.97 E-value=0.00035 Score=71.58 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=33.6
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEE
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIIS 74 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs 74 (455)
.+++.+ .++..|+|.||+|||||||+..||..+++.+++
T Consensus 161 ~~~~~i---~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 161 CMVYNI---PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHHCC---TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred hccccc---CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 356777 677899999999999999999999988877655
No 159
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.95 E-value=0.00059 Score=64.07 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
..++.+.|.||+|+|||++|..+|..++..++..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~ 72 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAG 72 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEech
Confidence 345678999999999999999999999887766553
No 160
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=96.95 E-value=0.0023 Score=70.52 Aligned_cols=95 Identities=13% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccc-cccCcccccc-------
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLI-DILHPCEDYS------- 114 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhli-d~~~~~~~~s------- 114 (455)
.+++|+|+|| ||++|...|.+.++.. +.....++|.+|.+.|..|+.|||+ +.-.+.....
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~--------~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~ 598 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPDK--------FGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEA 598 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCccc--------eeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEE
Confidence 4689999999 3999999999887522 2345678999999999999999999 5544432221
Q ss_pred ---hhhHHHHHHHHHHHHHhcCCccEEechhhHHHHHH
Q 012837 115 ---VGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWF 149 (455)
Q Consensus 115 ---v~~f~~~a~~~i~~I~~~gk~pIvvGGTg~Yl~aL 149 (455)
.+.|+....+.|++++++|+.+|+..- .-.++.+
T Consensus 599 ~~~~g~~YGt~~~~v~~~~~~g~~~ildi~-~~~~~~l 635 (721)
T 2xkx_A 599 GQYNSHLYGTSVQSVREVAEQGKHCILDVS-ANAVRRL 635 (721)
T ss_pred EEECCccceeeHHHHHHHHHCCCcEEEeCC-HHHHHHH
Confidence 245677788889999999999998763 3334444
No 161
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.95 E-value=0.00062 Score=59.65 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
....++|.||+|+|||++|..+|+.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999987
No 162
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.95 E-value=0.00032 Score=75.60 Aligned_cols=51 Identities=27% Similarity=0.450 Sum_probs=41.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
-+.++|+++ +++..++|+||+|||||||.+.|+..+. .++++| +.|.++..
T Consensus 370 ~l~~isl~i---~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 370 VLKDITFHI---KPGQKVALVGPTGSGKTTIVNLLMRFYD-----VDRGQILVDGIDIRK 421 (598)
T ss_dssp SCCSEEEEC---CTTCEEEEECCTTSSTTHHHHHHTTSSC-----CSEEEEEETTEEGGG
T ss_pred cccceEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCeEEEECCEEhhh
Confidence 455699999 7889999999999999999999988654 567776 56666543
No 163
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.94 E-value=0.0004 Score=67.52 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=31.4
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
.+++++ .++ ++|.||+|||||+|++.||..++..+|..+
T Consensus 38 ~~~l~~---~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i~ 76 (274)
T 2x8a_A 38 ALGLVT---PAG--VLLAGPPGCGKTLLAKAVANESGLNFISVK 76 (274)
T ss_dssp HTTCCC---CSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred HcCCCC---CCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 466776 333 999999999999999999999886665544
No 164
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.93 E-value=0.00071 Score=64.67 Aligned_cols=36 Identities=33% Similarity=0.484 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
..+..+.|.||+|+|||+||+.+|..++..++..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 345679999999999999999999999988766543
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.92 E-value=0.00077 Score=58.88 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+..++|.||+|+|||+++..+|+.+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999873
No 166
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.91 E-value=0.00067 Score=64.81 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
..+..+.|.||+|+|||+||..+|+.++..++..++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~ 97 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS 97 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeC
Confidence 345679999999999999999999999888766553
No 167
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.91 E-value=0.00073 Score=66.12 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=32.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
..++.|.|.||+|+|||+||+.||..++..+++.+..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~ 83 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 83 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhH
Confidence 4567899999999999999999999999888777643
No 168
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.91 E-value=0.00031 Score=75.35 Aligned_cols=50 Identities=26% Similarity=0.339 Sum_probs=40.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-++||++ +++..++|+||+|||||||.+.|+..+. .+++.| +.|.++.
T Consensus 356 ~l~~isl~i---~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~ 406 (578)
T 4a82_A 356 ILKDINLSI---EKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIK 406 (578)
T ss_dssp SEEEEEEEE---CTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGG
T ss_pred ceeeeEEEE---CCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEEhh
Confidence 355699999 8889999999999999999999987654 567776 4566653
No 169
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.90 E-value=0.00052 Score=66.03 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=30.2
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
.+++++ .++ ++|.||+|||||+|++.||..++..++..+
T Consensus 67 ~~~~~~---~~g--vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 67 EMGARI---PKG--VLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp HTTCCC---CCE--EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred HcCCCC---CCe--EEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 355665 333 899999999999999999998876555544
No 170
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.89 E-value=0.00041 Score=74.68 Aligned_cols=50 Identities=28% Similarity=0.406 Sum_probs=40.1
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-++||++ +++..++|+||+|||||||++.|+..+. .++++| +.|.++.
T Consensus 358 ~l~~isl~i---~~Ge~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~i~g~~i~ 408 (587)
T 3qf4_A 358 VLSGVNFSV---KPGSLVAVLGETGSGKSTLMNLIPRLID-----PERGRVEVDELDVR 408 (587)
T ss_dssp SEEEEEEEE---CTTCEEEEECSSSSSHHHHHHTTTTSSC-----CSEEEEEESSSBGG
T ss_pred ceeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEECCEEcc
Confidence 455699999 7889999999999999999999987654 566666 4566653
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.89 E-value=0.0022 Score=58.60 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+..++|.||+|+|||++|..+|..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998774
No 172
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.89 E-value=0.00036 Score=75.06 Aligned_cols=50 Identities=28% Similarity=0.366 Sum_probs=40.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-+-++||++ +++..++|+||+|||||||.+.|+..+. .++++| +.|.++.
T Consensus 359 vl~~isl~i---~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 359 IFQDFSLSI---PSGSVTALVGPSGSGKSTVLSLLLRLYD-----PASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEE---CTTCEEEEECCTTSSSTHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred cccceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCEEhh
Confidence 355699999 7889999999999999999999998653 667776 4566553
No 173
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.87 E-value=0.0012 Score=69.84 Aligned_cols=52 Identities=25% Similarity=0.359 Sum_probs=40.4
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccccC
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGSA 89 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~Ta 89 (455)
..+..++|++ .+ .+++|+||+|||||||.+.|+..+. .|++.| +.|.++...
T Consensus 18 ~~l~~vsl~i---~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 18 NGFFARTFDF---DE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEAGS 70 (483)
T ss_dssp TTEEEEEEEC---CS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSCSC
T ss_pred ccccceEEEE---cc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEcccC
Confidence 3455689998 56 8999999999999999999998654 566766 566666543
No 174
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.87 E-value=0.00084 Score=64.68 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.+..+.|.||+|+|||++|+.+|..++..++..+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 87 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISA 87 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeH
Confidence 35689999999999999999999999988766543
No 175
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.86 E-value=0.0017 Score=70.78 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc---CCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL---NGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~DS~ 78 (455)
++.+|+|+|++||||||+|..|++.+ |..++..|+-
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 67899999999999999999999999 8888888753
No 176
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.84 E-value=0.00033 Score=70.93 Aligned_cols=35 Identities=34% Similarity=0.499 Sum_probs=30.3
Q ss_pred cceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 32 FATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 32 ~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
..+++++ .++.+++|+||||||||||++.|+..++
T Consensus 166 ~~l~~~i---~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAV---QLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHH---HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHH---hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3477777 6788999999999999999999998765
No 177
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.82 E-value=0.00073 Score=67.61 Aligned_cols=36 Identities=39% Similarity=0.546 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.+..|+|.||||+|||++|+.||+.++.+++..+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~ 85 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 85 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechH
Confidence 356799999999999999999999999888877754
No 178
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.79 E-value=0.00039 Score=63.37 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=23.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++|+|.||+||||||++..|++.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999986
No 179
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.78 E-value=0.00085 Score=64.32 Aligned_cols=36 Identities=39% Similarity=0.611 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.+..+.|.||+|+|||++|+.+|+.++..++..+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~ 84 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcch
Confidence 456789999999999999999999998877766543
No 180
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.74 E-value=0.00084 Score=66.80 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++.+|+|+||+|||||||++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 6788999999999999999999998764
No 181
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.74 E-value=0.00078 Score=66.72 Aligned_cols=32 Identities=38% Similarity=0.499 Sum_probs=27.8
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+++++ .++.+++|+||+||||||++..||..+
T Consensus 93 l~~~~---~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 93 LQLGF---RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CCCCS---SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccc---CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555 678899999999999999999999876
No 182
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.73 E-value=0.001 Score=66.70 Aligned_cols=35 Identities=40% Similarity=0.602 Sum_probs=30.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
...+.|.||+|+|||++|+.||+.++..++.+|..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 106 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDAT 106 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecch
Confidence 45789999999999999999999999888877643
No 183
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.69 E-value=0.00074 Score=64.78 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+++++|+|.||.||||||++..|++.++
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999885
No 184
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.69 E-value=0.00096 Score=60.86 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=23.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
.++|+||+|||||||++.|+..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999998863
No 185
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.68 E-value=0.0012 Score=61.14 Aligned_cols=46 Identities=26% Similarity=0.472 Sum_probs=38.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccc--cccC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLD--IGSA 89 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~--I~Ta 89 (455)
.++-|+|.|++|+||||+|..|.+ .|..+|+-|...+.+.-+ ++++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~i~~~~~~l~g~~ 62 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID-RGHQLVCDDVIDLKQENNQLIGSC 62 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEEEEESSSCEEEEC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEEEEEeCCEEEEeC
Confidence 567899999999999999999998 488899999888876543 4444
No 186
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.67 E-value=0.00091 Score=63.27 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
-..|+|+|..||||||++..|++ +|.++|++|..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~i 42 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLI 42 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHH
Confidence 35799999999999999999998 99999999953
No 187
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.65 E-value=0.00059 Score=65.18 Aligned_cols=32 Identities=31% Similarity=0.348 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC-CcEE
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN-GEII 73 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~-~~iI 73 (455)
.++++|+|.|+.||||||++..||+.++ ..++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 4568999999999999999999999994 3444
No 188
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.64 E-value=0.00097 Score=63.99 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=29.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
...++|.||+||||||+|..||+.++...|++|
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~g 40 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTG 40 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeech
Confidence 357899999999999999999999998877765
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.63 E-value=0.00084 Score=63.00 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcE
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEI 72 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~i 72 (455)
.++.+|+|.||+||||||+++.|+.. ++++
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v 47 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDI 47 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence 56789999999999999999999986 5443
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.61 E-value=0.0018 Score=62.47 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.....+.|.||+|+|||++|+.+|+.++
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999999884
No 191
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0014 Score=68.19 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
..++=|.+.||+|+|||.||+++|.+++..|++.+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 4566799999999999999999999999999887754
No 192
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.60 E-value=0.0011 Score=64.09 Aligned_cols=27 Identities=33% Similarity=0.640 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+++|+||||||||||...|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 677899999999999999999999865
No 193
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.56 E-value=0.0018 Score=58.90 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEE
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEII 73 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iI 73 (455)
.++.+++|.||+|||||+|+..+|...+..++
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~ 49 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVA 49 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEE
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 57789999999999999999999984343343
No 194
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0016 Score=68.02 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
..++=|.+.||+|+|||.||+++|.+++..|++.+...
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 45678999999999999999999999999998877543
No 195
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.55 E-value=0.0014 Score=65.06 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++.+|+|+||+||||||++..||..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 578999999999999999999998763
No 196
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.55 E-value=0.0016 Score=64.23 Aligned_cols=35 Identities=37% Similarity=0.510 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++-+.|.||+|+|||+||+.+|..++..++..+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 35679999999999999999999999988877654
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.55 E-value=0.00082 Score=65.88 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc---CCcEEEcCccce
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL---NGEIISADSVQV 80 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~DS~qi 80 (455)
....++|.||+|+|||+||..++..+ +..++..+...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 34679999999999999999999988 666766654443
No 198
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.54 E-value=0.0019 Score=64.74 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
.++.|.|.||+|+|||+||+.+|..++..++..+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh
Confidence 45689999999999999999999999988776554
No 199
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0013 Score=67.06 Aligned_cols=32 Identities=38% Similarity=0.499 Sum_probs=27.7
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+++++ .++.+|+|+||+||||||++..||..+
T Consensus 150 l~l~~---~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 150 LQLGF---RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CCCCS---SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceec---CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45555 678899999999999999999999876
No 200
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.51 E-value=0.00092 Score=78.46 Aligned_cols=50 Identities=26% Similarity=0.404 Sum_probs=39.8
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccccc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIGS 88 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~T 88 (455)
|-++||++ +++..|+|+||||||||||+..|.+-+. .++++| .-|.||.+
T Consensus 1095 L~~isl~I---~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A 1095 LKGLSFSV---EPGQTLALVGPSGCGKSTVVALLERFYD-----TLGGEIFIDGSEIKT 1145 (1321)
T ss_dssp EEEEEEEE---CTTCEEEEECSTTSSTTSHHHHHTTSSC-----CSSSEEEETTEETTT
T ss_pred ccceeEEE---CCCCEEEEECCCCChHHHHHHHHhcCcc-----CCCCEEEECCEEhhh
Confidence 55699999 7889999999999999999999988553 566665 45666543
No 201
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.51 E-value=0.0013 Score=61.10 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELA 65 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA 65 (455)
.++.+++|+||+|||||||++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 578899999999999999999998
No 202
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.50 E-value=0.0022 Score=60.22 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
++++|+|.|+.||||||++..|++.++.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3678999999999999999999999953
No 203
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0017 Score=67.73 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
..++=|.+.||+|+|||.||++||.+++..|++.+.-
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 4567799999999999999999999999998877653
No 204
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.48 E-value=0.0014 Score=60.02 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+++|+||+|||||||++.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 577899999999999999999999844
No 205
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.48 E-value=0.00053 Score=68.68 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=29.1
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+++++ ..+.+++|+||||||||||.+.|+..++
T Consensus 163 ~l~~~i---~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 163 AIKDGI---AIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHH---HHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred hhhhhc---cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 366777 5678999999999999999999998764
No 206
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.48 E-value=0.0017 Score=61.67 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
+++..++|.||+|+|||++|..||+.+.+.+++.+
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fa 90 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFV 90 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCC
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence 44557999999999999999999999988776544
No 207
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.48 E-value=0.00079 Score=63.85 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=28.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
++-+.|.||+|+|||+||..+|..++..++..+.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~ 77 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGG 77 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCS
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEech
Confidence 3458899999999999999999999877766554
No 208
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.47 E-value=0.0013 Score=69.87 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
+++.+|+|+|++||||||+|+.||++|+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999983
No 209
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.46 E-value=0.002 Score=63.19 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
....+.|.||+|+|||++|..+|..++..++..+
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 3456899999999999999999999988776654
No 210
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.44 E-value=0.0023 Score=63.45 Aligned_cols=35 Identities=37% Similarity=0.478 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc-CCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL-NGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l-~~~iIs~DS 77 (455)
.++-|.|.||+|+|||+||+.+|..+ +..+++.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 45789999999999999999999998 666665543
No 211
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0019 Score=66.78 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
..++=|.+.||+|+|||.||+++|.+++..|++.+.-
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 3456789999999999999999999999999887754
No 212
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.42 E-value=0.0023 Score=66.43 Aligned_cols=39 Identities=31% Similarity=0.600 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC--CcEEEcCcccee
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN--GEIISADSVQVY 81 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~--~~iIs~DS~qiY 81 (455)
.++-+.+.||+|+|||++|+.+|+.++ ..++..+...++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 346799999999999999999999999 888888876654
No 213
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.42 E-value=0.0027 Score=64.20 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=31.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.+.|.|.||+|+|||+||..+|..++..++..+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~ 182 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAA 182 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHH
Confidence 46899999999999999999999999988877653
No 214
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.42 E-value=0.0019 Score=67.67 Aligned_cols=35 Identities=40% Similarity=0.627 Sum_probs=31.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
++-|.|.||+|+|||++|+.||+.++..++..|.-
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~ 84 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecch
Confidence 45699999999999999999999999999888853
No 215
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.42 E-value=0.0044 Score=63.62 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDA 122 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~a 122 (455)
.+++|+|+||+| +||..+|.+.++..+.+ .|..|.+.|..|+.|||+ .
T Consensus 231 ~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~------------~tr~pR~gE~dG~~Y~Fv-----------------~ 278 (391)
T 3tsz_A 231 FLRPVTIFGPIA---DVAREKLAREEPDIYQI------------AKSEPRDAGTDQRSSGII-----------------R 278 (391)
T ss_dssp SCCCEEEESTTH---HHHHHHHHHHCTTTEEE------------CCCCCCCSSSCCC--CCC-----------------C
T ss_pred CCCEEEEECCCH---HHHHHHHHhhCcccccc------------ccCCCCCcccCCccCCcC-----------------c
Confidence 678999999998 89999999888744432 366788899999999998 3
Q ss_pred HHHHHHHHhcCCccEEe
Q 012837 123 RHATKDVLKKGRVPIVT 139 (455)
Q Consensus 123 ~~~i~~I~~~gk~pIvv 139 (455)
.+.+++++++|+.+|+.
T Consensus 279 ~~~V~~~~~~Gk~~iLd 295 (391)
T 3tsz_A 279 LHTIKQIIDQDKHALLD 295 (391)
T ss_dssp HHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 57789999999999874
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.40 E-value=0.0023 Score=57.95 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
..++|.||+|+|||+||..++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999877
No 217
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.40 E-value=0.0018 Score=56.39 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
....|.|.||+|+|||++|+.++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999999875
No 218
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.38 E-value=0.0012 Score=71.08 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC----CcEEEcCccceecc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN----GEIISADSVQVYRG 83 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~----~~iIs~DS~qiYr~ 83 (455)
.++.+|+|+|++||||||+|+.|++.++ ..++..|+-.++++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~ 439 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE 439 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHH
Confidence 3567899999999999999999999986 34455554344444
No 219
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.38 E-value=0.0023 Score=63.59 Aligned_cols=29 Identities=34% Similarity=0.592 Sum_probs=26.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcE
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEI 72 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~i 72 (455)
...++|.||+|+|||||++.+|..++..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 36799999999999999999999998655
No 220
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.38 E-value=0.016 Score=59.93 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=29.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHc-----CCcEEEcCccc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRL-----NGEIISADSVQ 79 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l-----~~~iIs~DS~q 79 (455)
...++|.||+|+|||+||..+|..+ +..++..++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 5689999999999999999999987 66666655433
No 221
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.34 E-value=0.0018 Score=68.77 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC-----CcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN-----GEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~-----~~iIs~DS 77 (455)
..+.+|+++|++||||||+|..||+.++ ..+++.|.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 3567899999999999999999999884 34566674
No 222
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.34 E-value=0.0024 Score=61.47 Aligned_cols=24 Identities=46% Similarity=0.695 Sum_probs=22.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
..+.|.||+|+|||++|+.||+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 223
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.32 E-value=0.0023 Score=64.36 Aligned_cols=34 Identities=38% Similarity=0.531 Sum_probs=29.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
++-|.|.||+|+|||+||+.+|..++..++..+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 4568999999999999999999999988877654
No 224
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.32 E-value=0.002 Score=68.46 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=28.9
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++|++ .++.+|+|+||+|||||||+..||..+
T Consensus 285 ~Isl~i---~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 285 PLNVEG---KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCS---CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Cceeec---cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 366776 678999999999999999999999866
No 225
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.30 E-value=0.0019 Score=75.86 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=32.7
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
-|-++||++ +++..++|+||+|||||||+..|.+.+.
T Consensus 433 vL~~isl~i---~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 433 ILRGMNLRV---NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp SEEEEEEEE---CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eeeceEEee---cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 355699999 8889999999999999999999998764
No 226
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0028 Score=66.11 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
..++=|.+.||+|+|||.||+++|.+++..|++.+.-.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 45677999999999999999999999999998877543
No 227
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0024 Score=67.19 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=32.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
..++=|.+.||+|+|||.||++||.+++..|++.+..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s 277 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS 277 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH
Confidence 4567899999999999999999999999999887654
No 228
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.29 E-value=0.0016 Score=65.52 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=28.3
Q ss_pred eeeeeccCCC--CcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 34 TSCSVASSKK--EKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 34 ~~~~~~~~~~--~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+++++ .+ +..++|+||+|||||||++.|+..++
T Consensus 161 v~~~v---~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 161 IPKEA---RPFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp SCTTT---GGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CCHHH---HHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 55555 45 67899999999999999999999886
No 229
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.29 E-value=0.0017 Score=76.00 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=39.6
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
-|-++||++ +++..++|+||||||||||.+.|+..+. .+++.| +.|.++.
T Consensus 405 vL~~isl~i---~~G~~~~ivG~sGsGKSTl~~ll~g~~~-----~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 405 ILKGLNLKV---KSGQTVALVGNSGCGKSTTVQLMQRLYD-----PLDGMVSIDGQDIR 455 (1284)
T ss_dssp SEEEEEEEE---CTTCEEEEECCSSSSHHHHHHHTTTSSC-----CSEEEEEETTEEGG
T ss_pred ceecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEHH
Confidence 455699999 8889999999999999999999987664 566665 3455543
No 230
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.28 E-value=0.0034 Score=66.51 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=30.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
-++|.||+|+|||+||+.||..++..+++.+...+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~ 100 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 100 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHH
Confidence 39999999999999999999999988888775443
No 231
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.28 E-value=0.0037 Score=57.91 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+++++++.||+||||||.+..+|.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999999877
No 232
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.28 E-value=0.0039 Score=55.53 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=27.1
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+++.+ . +.+.+|+||+|||||||..+|+-.++
T Consensus 19 ~~~~~~---~-~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 19 KVVIPF---S-KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CEEEEC---C-SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEec---C-CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 356665 2 34899999999999999999998776
No 233
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.25 E-value=0.0024 Score=58.27 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+++|.||+|||||||+..+|..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998654
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.22 E-value=0.0026 Score=63.83 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+|+|+||+||||||++..||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999876
No 235
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.22 E-value=0.0018 Score=62.65 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=29.5
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
|-.+++.+ .++.+++|+||+|+|||||+..||..+
T Consensus 25 Ld~i~~~l---~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 25 INDKTLGA---RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp HHHHHCSB---CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCC---CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33466777 788999999999999999999998765
No 236
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.21 E-value=0.0018 Score=58.95 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++++|+||+|||||||+..|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999998764
No 237
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.18 E-value=0.0025 Score=74.53 Aligned_cols=50 Identities=28% Similarity=0.361 Sum_probs=40.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-ecccccc
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDIG 87 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I~ 87 (455)
.|-++||++ +++..++|+||+|||||||++.|+..+. .+++.| +.|.++.
T Consensus 1048 ~l~~vsl~i---~~Ge~v~ivG~sGsGKSTl~~~l~g~~~-----p~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A 1048 VLQGLSLEV---KKGQTLALVGSSGCGKSTVVQLLERFYD-----PMAGSVFLDGKEIK 1098 (1284)
T ss_dssp SBSSCCEEE---CSSSEEEEECSSSTTHHHHHHHHTTSSC-----CSEEEEESSSSCTT
T ss_pred eecceeEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEcc
Confidence 455699999 8889999999999999999999998654 566666 4566654
No 238
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.18 E-value=0.0034 Score=57.99 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
.++.+++|.||+|||||+|+..||..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56789999999999999999999984
No 239
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.17 E-value=0.0035 Score=64.97 Aligned_cols=28 Identities=36% Similarity=0.630 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++.+|+|+|||||||||+...|+..++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567999999999999999999998775
No 240
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.16 E-value=0.0029 Score=67.46 Aligned_cols=35 Identities=34% Similarity=0.422 Sum_probs=29.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
.++.+++|+||+|||||||++.|+..+. .+++.|+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~ 344 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIE 344 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEE
Confidence 5788999999999999999999997553 5666664
No 241
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.14 E-value=0.0027 Score=67.77 Aligned_cols=35 Identities=37% Similarity=0.517 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
.++.+++|+||+|||||||++.|+..+. .|++.|+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~ 326 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVT 326 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE
Confidence 6788999999999999999999997553 5666664
No 242
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.13 E-value=0.003 Score=68.42 Aligned_cols=35 Identities=34% Similarity=0.420 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
.++.+++|+||+|||||||.+.|+..+. .|++.|+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~ 414 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVE 414 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEE
Confidence 5788999999999999999999997553 5666664
No 243
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.11 E-value=0.0026 Score=61.63 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=27.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISA 75 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~ 75 (455)
...++|.||+|+|||++|..+|..++..++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~ 69 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45789999999999999999999998766543
No 244
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.11 E-value=0.0037 Score=61.81 Aligned_cols=33 Identities=24% Similarity=0.534 Sum_probs=27.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCC--cEEEcC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNG--EIISAD 76 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~--~iIs~D 76 (455)
+..+.|.||+|+|||++|+.+|+.++. .++...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 468999999999999999999999874 344433
No 245
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.10 E-value=0.0042 Score=66.44 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+++.+|+|+|++||||||+|..|++.++
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999999886
No 246
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.08 E-value=0.0034 Score=58.99 Aligned_cols=28 Identities=39% Similarity=0.517 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+++++|+|.||.||||||++..|++.++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999885
No 247
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.08 E-value=0.0034 Score=57.33 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+.++|+|+|++|||||||+..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999999876
No 248
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.07 E-value=0.0036 Score=61.38 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc------CCcEEEcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL------NGEIISAD 76 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l------~~~iIs~D 76 (455)
..+..++|.||+|+|||+|+..+++.+ +..++..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 356789999999999999999999987 55555554
No 249
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.06 E-value=0.0047 Score=61.88 Aligned_cols=40 Identities=35% Similarity=0.527 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRG 83 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~ 83 (455)
.++-++|.|++|+||||+|..|.++ |..+|+-|.+.+++.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i~~~ 182 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEIREI 182 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEEEES
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEEEEEc
Confidence 5678999999999999999999875 888998888887653
No 250
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.05 E-value=0.0031 Score=61.93 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
..+..++|.||+|+|||+++..+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999987
No 251
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.04 E-value=0.0035 Score=63.74 Aligned_cols=27 Identities=33% Similarity=0.640 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+++|+|||||||||+...|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 567899999999999999999999865
No 252
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.03 E-value=0.0032 Score=58.06 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=22.1
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+++|+||+|||||||...||..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 478999999999999999999876
No 253
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.02 E-value=0.0016 Score=56.72 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=26.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
...|.|.||+|+|||++|+.++...+ .++..|.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~ 59 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPAR 59 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEech
Confidence 35689999999999999999998766 5555543
No 254
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.02 E-value=0.0028 Score=67.95 Aligned_cols=28 Identities=43% Similarity=0.587 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++.+|+|+||+|||||||++.||..++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 4678999999999999999999999885
No 255
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.02 E-value=0.0055 Score=63.53 Aligned_cols=35 Identities=37% Similarity=0.478 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc-CCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL-NGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l-~~~iIs~DS 77 (455)
.++-|.|.||+|+|||+||+.+|..+ +..+++.+.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 44689999999999999999999998 667766654
No 256
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.01 E-value=0.0045 Score=61.18 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+..++|.||+|+|||+|+..+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999987
No 257
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.01 E-value=0.0023 Score=72.94 Aligned_cols=44 Identities=32% Similarity=0.399 Sum_probs=36.5
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceec
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYR 82 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr 82 (455)
+-++||++ .++.+++|+||+|||||||.+.|+..+. .+++.|+.
T Consensus 689 L~dVSl~I---~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~ 732 (986)
T 2iw3_A 689 ITDINFQC---SLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYT 732 (986)
T ss_dssp EEEEEEEE---ETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEE
T ss_pred eeccEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEE
Confidence 45689999 7889999999999999999999987553 66777653
No 258
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.01 E-value=0.0034 Score=67.07 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=30.9
Q ss_pred eeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 37 SVASSKKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 37 ~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.+|...++.+++|+||+|||||||.+.|+..+. .|++.+
T Consensus 18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i 56 (538)
T 3ozx_A 18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDP 56 (538)
T ss_dssp CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCT
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcc
Confidence 455566789999999999999999999997553 455554
No 259
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.00 E-value=0.0046 Score=65.19 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=30.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
++-|.|.||+|+|||+||+.+|..++.++++.+...
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~ 84 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSD 84 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHH
Confidence 345899999999999999999999999888776443
No 260
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.00 E-value=0.0051 Score=64.74 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=43.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceecccccccCCCCccccccCccccccccCcccccchhhHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFED 121 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr~l~I~Takps~~e~~~v~hhlid~~~~~~~~sv~~f~~~ 121 (455)
..+++|+|+||+|+| |..+|.+.++..+.++ +|. |.+.|..|+.||| .
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~-----------~TR-pR~gE~dG~~Y~F-----------------T 269 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDIYQIA-----------KSE-PRDAGTDQRSSGI-----------------I 269 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTTEEEC-----------CCB-C----------CB-----------------C
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCceeee-----------cCC-CCCcccccccCCc-----------------c
Confidence 356899999999999 9999988887444331 366 8899999999988 2
Q ss_pred HHHHHHHHHhcCCccEEe
Q 012837 122 ARHATKDVLKKGRVPIVT 139 (455)
Q Consensus 122 a~~~i~~I~~~gk~pIvv 139 (455)
..+.|++++++|+.+|+.
T Consensus 270 s~~~V~~vl~~Gk~~iLd 287 (468)
T 3shw_A 270 RLHTIKQIIDQDKHALLD 287 (468)
T ss_dssp CHHHHHHHHTTTCEEEEC
T ss_pred cHHHHHHHHHCCCeEEEE
Confidence 467789999999999874
No 261
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.98 E-value=0.0039 Score=62.23 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=27.8
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++|+. .++++|+|+||+|+||||++..||..+
T Consensus 97 ~l~~~~---~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 97 RIDFKE---NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCT---TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CccccC---CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355554 567899999999999999999999866
No 262
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.96 E-value=0.0042 Score=55.95 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=23.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+..++|.||+|+|||+++..+++.++
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999999875
No 263
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.95 E-value=0.0097 Score=56.53 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+++|.||+|+||||++..+|.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999998876
No 264
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.95 E-value=0.0034 Score=63.68 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++.+++|+|||||||||+...|+..++
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 456999999999999999999988763
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.92 E-value=0.0043 Score=61.12 Aligned_cols=27 Identities=41% Similarity=0.458 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+|+|+||+||||||++..||..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999765
No 266
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.91 E-value=0.0029 Score=59.22 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.++.+++|+||+|||||||.+.|+.. . .|++.|
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I 52 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQV 52 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCee
Confidence 45779999999999999999999975 3 466666
No 267
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.91 E-value=0.0046 Score=61.38 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+|+|+||+||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 567899999999999999999999876
No 268
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.91 E-value=0.0055 Score=65.30 Aligned_cols=34 Identities=32% Similarity=0.638 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
++..++|.||+|+|||+||+.||..++..++..+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~ 140 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence 5779999999999999999999999987665443
No 269
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.88 E-value=0.0052 Score=58.09 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
.++++|+|.||.||||||++..|++.++.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46789999999999999999999999984
No 270
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.87 E-value=0.0048 Score=55.05 Aligned_cols=25 Identities=40% Similarity=0.686 Sum_probs=22.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
..++|.||+|+|||+++..+++.+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3499999999999999999999863
No 271
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.87 E-value=0.0054 Score=60.50 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=23.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+.++|.||+|+|||+|+..++..+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3899999999999999999999883
No 272
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.86 E-value=0.0037 Score=59.57 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+++++|+|.||.||||||++..|++.++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999985
No 273
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.85 E-value=0.0052 Score=56.06 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++++|+||+|||||||+..|+..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999999875
No 274
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.84 E-value=0.0049 Score=64.32 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+..++|.||+|+|||++|..||+.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44567999999999999999999987
No 275
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.84 E-value=0.0056 Score=59.66 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.+.++.+.||+|+|||++|..+|+.++..++..++.
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 346788899999999999999999999888776643
No 276
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.0029 Score=66.34 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=29.4
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+++++ .++.+++|+||+|||||||++.|+..+
T Consensus 130 ~vsl~i---~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 130 KIRMSN---FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHHS---SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred cCceEe---CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 477887 688999999999999999999999865
No 277
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.81 E-value=0.0056 Score=61.62 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.++.|+||+|||||||+..+|...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 678899999999999999999999876
No 278
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.78 E-value=0.0022 Score=68.12 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=27.5
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+++.+ ..+..++|+|||||||||+...|+..++
T Consensus 253 l~~~v---~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 253 LWLAI---EHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHHHH---HTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHH---hCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 55555 5677899999999999999999988664
No 279
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.78 E-value=0.0062 Score=57.73 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+..+.|.||+|+|||++|+.++...+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 280
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.77 E-value=0.005 Score=68.72 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=32.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
..+..|+|.||+|||||+||+.||..++..++..+...
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~ 273 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchH
Confidence 56678999999999999999999999998887776543
No 281
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.76 E-value=0.0041 Score=62.33 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=30.0
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+-.+++++ .++.+++|+||+|||||||...|+..+
T Consensus 45 l~~i~~~~---~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 45 IDAVLPQT---GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHGGGC---CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhCCccc---CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34577777 778999999999999999999999765
No 282
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.75 E-value=0.024 Score=56.84 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=29.0
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHc-----CCcEEEcCcc
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRL-----NGEIISADSV 78 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l-----~~~iIs~DS~ 78 (455)
..+..+|+|+|++|+|||||+..|+..+ ..-++.+|..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPS 118 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC--
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 3456789999999999999999999775 2346677743
No 283
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.75 E-value=0.0043 Score=61.42 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc---CCcEEEcCccce-eccccc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL---NGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~DS~qi-Yr~l~I 86 (455)
+-++++|+||+|||||||.+.|+... ..-+|..|++.| +.+.++
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 34689999999999999999999765 234666777765 334433
No 284
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.75 E-value=0.0067 Score=59.69 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee----cccccc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY----RGLDIG 87 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY----r~l~I~ 87 (455)
.+.+++|+||+|||||||.+.|+ .+. .+++.|. +|.+++
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t 206 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTT 206 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCce
Confidence 46799999999999999999999 654 4566663 555443
No 285
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.75 E-value=0.0027 Score=66.16 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcE
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEI 72 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~i 72 (455)
.++.+|+++|.+||||||++..||+.++..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 3567899999999999999999999886433
No 286
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.75 E-value=0.005 Score=59.86 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcC
Q 012837 46 VIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++|+||+|||||||.+.|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998764
No 287
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.72 E-value=0.0057 Score=57.54 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++++|+|.|+.||||||++..|++.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999885
No 288
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.006 Score=61.04 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++..+.|.||+|+|||++++.+++++.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999884
No 289
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.67 E-value=0.0066 Score=57.69 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++++|+|.|+.||||||++..|++.++
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999999886
No 290
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.67 E-value=0.0056 Score=56.56 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+++|.||+|||||+|+..+|...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999887653
No 291
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.65 E-value=0.008 Score=63.42 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
..+.-+.|.||+|+|||++|+.+|..++..++..+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~ 272 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP 272 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEch
Confidence 3456799999999999999999999999888776643
No 292
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.65 E-value=0.0074 Score=62.87 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=29.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
..++|.||+|+|||+||..||+.++..++..+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISA 83 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 578999999999999999999999988776654
No 293
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.63 E-value=0.0059 Score=59.78 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=27.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCcEEE
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGEIIS 74 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs 74 (455)
+..+.|.||+|+|||+||+.+|..++..++.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 3578999999999999999999999877654
No 294
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.62 E-value=0.0061 Score=64.99 Aligned_cols=34 Identities=41% Similarity=0.561 Sum_probs=28.9
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+.+++ ++ .++.+++|+||+|||||||.+.|+..+
T Consensus 38 l~~vs-~i---~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 38 LYRLP-VV---KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EECCC-CC---CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ccCcC-cC---CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33466 66 788999999999999999999999755
No 295
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.59 E-value=0.0042 Score=63.34 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=25.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcE
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEI 72 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~i 72 (455)
..|+|+||+||||||+++.||+.++..+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4599999999999999999999998766
No 296
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.57 E-value=0.0035 Score=65.27 Aligned_cols=34 Identities=32% Similarity=0.243 Sum_probs=29.3
Q ss_pred ccceeeeeccCCCCcE--EEEEcCCcccHHHHHHHHHHH
Q 012837 31 LFATSCSVASSKKEKV--IVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~i--I~I~GPTGsGKStLA~~LA~~ 67 (455)
+-.+++++ .++.+ ++|+||+|||||||...|+..
T Consensus 30 L~~vsl~i---~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSV---SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSC---C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEe---cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 55688888 77888 999999999999999999875
No 297
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.56 E-value=0.0048 Score=67.16 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=27.5
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHH
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALEL 64 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~L 64 (455)
.|-++||++ .++.+++|+||+|||||||.+.+
T Consensus 337 ~L~~vsl~I---~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 337 NLKNVSVKI---PLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TCCSEEEEE---ETTSEEEEECSTTSSHHHHHTTT
T ss_pred ccccceeEe---cCCCEEEEEeeCCCCHHHHHHHH
Confidence 355689999 78899999999999999998654
No 298
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.54 E-value=0.0075 Score=55.07 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
++++++|.||+||||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998888765
No 299
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.51 E-value=0.011 Score=56.89 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
...+++.++.||.||||||.+..++.++
T Consensus 16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 16 KTRGQIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp --CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3457899999999999999999888765
No 300
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.0093 Score=64.65 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=28.5
Q ss_pred ceeeeeccC--CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 33 ATSCSVASS--KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 33 ~~~~~~~~~--~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++|++..- .++.+++|+||+|||||||++.|+..+.
T Consensus 365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred ceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC
Confidence 467777211 2337899999999999999999998653
No 301
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.50 E-value=0.0074 Score=59.26 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
.+.+++|+||+|||||||.+.|+.... .+++.|.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~ 201 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVS 201 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-----
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc-----cccccee
Confidence 467999999999999999999987553 5566654
No 302
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.47 E-value=0.009 Score=62.26 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc---CC--cEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL---NG--EIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l---~~--~iIs~DS 77 (455)
.++.+|+++||+||||||++..||..+ +. -++.+|.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 357899999999999999999999766 32 3567773
No 303
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.47 E-value=0.0028 Score=57.25 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
.++..|+|+|++|||||||...|+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56788999999999999999988754
No 304
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.46 E-value=0.017 Score=54.83 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++++.++.||.||||||.+..+|.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999998876
No 305
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.45 E-value=0.0079 Score=66.22 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc----------CCcEEEcCccceec
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL----------NGEIISADSVQVYR 82 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l----------~~~iIs~DS~qiYr 82 (455)
.+..++|.||+|+|||++|..||+.+ +..++..|.+.-|+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~ 249 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYR 249 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccccccc
Confidence 44568999999999999999999997 67777777633343
No 306
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.44 E-value=0.008 Score=68.53 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=30.3
Q ss_pred cccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHH
Q 012837 30 RLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 30 ~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
-+-++||++ .++.+++|+||+|||||||.+.|+.
T Consensus 450 iL~~vsl~I---~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 450 LLNKTQLRL---KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEecceEEE---cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345699999 7889999999999999999999994
No 307
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.41 E-value=0.0076 Score=57.91 Aligned_cols=27 Identities=44% Similarity=0.585 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+++|.||+|||||||+..+|..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999998754
No 308
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.38 E-value=0.012 Score=61.43 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc-----CCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL-----NGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l-----~~~iIs~DS 77 (455)
++.+|+|+||+||||||++..||..+ ..-++.+|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57899999999999999999999765 233677775
No 309
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.35 E-value=0.014 Score=55.57 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+.+|+||.||||||.+..++.++
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~ 52 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRG 52 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999777777655
No 310
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.32 E-value=0.0095 Score=57.30 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=28.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISAD 76 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~D 76 (455)
++|+|+|+.||||||+|..|++++|..+++..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~ 33 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLA 33 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecC
Confidence 58999999999999999999999997775544
No 311
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.30 E-value=0.0056 Score=64.69 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=27.4
Q ss_pred cccceee-eeccCCCCcEEEEEcCCcccHHHHHHHH
Q 012837 30 RLFATSC-SVASSKKEKVIVISGPTGAGKSQLALEL 64 (455)
Q Consensus 30 ~~~~~~~-~~~~~~~~~iI~I~GPTGsGKStLA~~L 64 (455)
.|-.+++ .+ .++.+++|+||+|||||||++.+
T Consensus 27 ~Ld~i~~G~i---~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 27 GFDDISHGGL---PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp THHHHTTSSE---ETTSEEEEEESTTSSHHHHHHHH
T ss_pred hHHHhcCCCC---CCCeEEEEEcCCCCCHHHHHHHH
Confidence 3445788 88 78899999999999999999994
No 312
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.29 E-value=0.0068 Score=61.25 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=29.9
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
+-.+++++ ..+ +++|+||+|||||||...|+--+++
T Consensus 51 l~~v~l~~---~~G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 51 ITQLELEL---GGG-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EEEEEEEC---CSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred eeeEEEec---CCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34477777 566 9999999999999999999887764
No 313
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.29 E-value=0.011 Score=61.64 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=29.5
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+ |++ .++..++|+||+|||||||...||....
T Consensus 150 ~v-l~i---~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 150 AL-LTV---GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HH-SCC---BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ee-EEe---cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 36 777 7889999999999999999999999875
No 314
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.27 E-value=0.0038 Score=64.65 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+++|+||+|||||||.+.|+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 399999999999999999999744
No 315
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.23 E-value=0.0087 Score=65.10 Aligned_cols=30 Identities=33% Similarity=0.597 Sum_probs=26.7
Q ss_pred ccccceeeeeccCCCCcEEEEEcCCcccHHHHH
Q 012837 29 RRLFATSCSVASSKKEKVIVISGPTGAGKSQLA 61 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA 61 (455)
..|-++||++ .++.+++|+||+|||||||+
T Consensus 32 ~~L~~vsl~i---~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 32 HNLKNIDVEI---PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTCCSEEEEE---ETTSEEEEECSTTSSHHHHH
T ss_pred cceeccEEEE---CCCCEEEEECCCCCCHHHHh
Confidence 3466799999 88899999999999999996
No 316
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.23 E-value=0.014 Score=53.25 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+.+.|+|+|++|||||||+..|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999875
No 317
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.23 E-value=0.015 Score=54.41 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=19.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...++.+|.||.||||||.....+..
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n 43 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRR 43 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999655544443
No 318
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.22 E-value=0.011 Score=66.19 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=34.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
..++=|.+.||+|+|||+||+.+|.+++..++..+.-.+
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence 456789999999999999999999999999988875443
No 319
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.20 E-value=0.011 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|+|||||...|+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999853
No 320
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.19 E-value=0.013 Score=64.20 Aligned_cols=33 Identities=33% Similarity=0.635 Sum_probs=29.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcc
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNGEIISADSV 78 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~ 78 (455)
.+.|.||||+|||++|+.||+.++..++..|-.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s 522 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS 522 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEech
Confidence 689999999999999999999998888777643
No 321
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.13 E-value=0.0093 Score=64.59 Aligned_cols=34 Identities=38% Similarity=0.540 Sum_probs=28.6
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+.+++ ++ .++.+++|+||+|||||||.+.|+..+
T Consensus 108 l~~vs-~i---~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 108 LYRLP-IV---KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EECCC-CC---CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eCCCC-CC---CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 33455 66 788999999999999999999999755
No 322
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.11 E-value=0.012 Score=58.02 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=23.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
...++|.||+|+|||.||..+|..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998653
No 323
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.11 E-value=0.012 Score=58.81 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=31.5
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc---C--CcEEEcCc
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL---N--GEIISADS 77 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l---~--~~iIs~DS 77 (455)
+++.+ .+..+|+|+|++|+|||||+..|+..+ + ..++..|.
T Consensus 49 l~~~~---~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 49 IMPYC---GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HGGGC---SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCccc---CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 45554 677899999999999999999998765 2 34566664
No 324
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.08 E-value=0.011 Score=59.16 Aligned_cols=39 Identities=31% Similarity=0.567 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccceec
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVYR 82 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiYr 82 (455)
.+.-++|.|++|+|||++|..|.+ .|..+|+=|...+.+
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i~~ 184 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEIYR 184 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEEEE
Confidence 567899999999999999999976 578899999887765
No 325
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.08 E-value=0.013 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...|+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999863
No 326
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.04 E-value=0.028 Score=62.82 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc----------CCcEEEcCccce
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL----------NGEIISADSVQV 80 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l----------~~~iIs~DS~qi 80 (455)
.+..++|+||+|+|||+|+..||+.+ +..+++.|...+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 237 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL 237 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh
Confidence 34567999999999999999999987 677877775443
No 327
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.03 E-value=0.018 Score=57.57 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
-.++.++.|.||+|||||+|+..+|..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999986
No 328
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.013 Score=63.44 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV 80 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi 80 (455)
.++.+++|+||+|||||||.+.|+..+. .|++.|
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i 134 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRF 134 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceE
Confidence 5788999999999999999999998653 455554
No 329
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.01 E-value=0.015 Score=58.98 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc---CCcEEEcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL---NGEIISAD 76 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~D 76 (455)
.++.++.|.||+|||||||+..+|..+ ++.++..|
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 567899999999999999999998764 44444444
No 330
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.00 E-value=0.016 Score=57.38 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.++.|.||+|||||+|+..+|...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 567899999999999999999999864
No 331
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.00 E-value=0.0081 Score=62.44 Aligned_cols=35 Identities=37% Similarity=0.635 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc-----CCcEEEcCc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL-----NGEIISADS 77 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l-----~~~iIs~DS 77 (455)
++.+|+|+||+||||||++..||..+ ..-++.+|.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 35789999999999999999999875 355777775
No 332
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.92 E-value=0.016 Score=56.01 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
++++|.||.|+|||+|+..+++.++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~ 56 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL 56 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence 59999999999999999999998753
No 333
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.92 E-value=0.0064 Score=60.53 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY 81 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY 81 (455)
.++.+++|+||+|||||||...|+..+. .+++.|.
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~ 205 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEIS 205 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC---------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHhccccc-----cccccee
Confidence 3578999999999999999999986543 4555554
No 334
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.86 E-value=0.018 Score=52.68 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+...|+|+|++|||||||...|+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999875
No 335
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.86 E-value=0.021 Score=53.50 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc----CCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL----NGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l----~~~iIs~DS 77 (455)
++..+++++|..||||||++..||..+ ..-+|..|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456789999999999999999999654 334677775
No 336
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.83 E-value=0.015 Score=56.09 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=25.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEE
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIIS 74 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs 74 (455)
++++|.||.|+|||+|+..+++..+..+++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~ 61 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILID 61 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEE
Confidence 689999999999999999999987633333
No 337
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.82 E-value=0.015 Score=57.11 Aligned_cols=22 Identities=27% Similarity=0.682 Sum_probs=20.9
Q ss_pred EEEEcCCcccHHHHHHHHHHHc
Q 012837 47 IVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 47 I~I~GPTGsGKStLA~~LA~~l 68 (455)
++|.||+|+||||+++.||+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999965
No 338
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.80 E-value=0.015 Score=57.38 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=23.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+.+|+|+||+|+||||++..||..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999766
No 339
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.79 E-value=0.015 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
..|+|+||+|||||||...|+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 340
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.75 E-value=0.0077 Score=67.24 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLNGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS 77 (455)
..+..++|.||+|+|||+||+.||..++..++..+.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 544 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 345678999999999999999999999877766654
No 341
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.74 E-value=0.026 Score=49.65 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=21.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+.+.+|+||+|||||+|..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999887655
No 342
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.72 E-value=0.019 Score=57.85 Aligned_cols=32 Identities=22% Similarity=0.152 Sum_probs=29.0
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+ |++ .++.+++|+||+|+|||||.+.|+....
T Consensus 65 l-l~i---~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 65 L-LTC---GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp H-SCE---ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred e-eee---cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5 777 7889999999999999999999999875
No 343
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.71 E-value=0.018 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
++++|+|+||+|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 66899999999999999999999765
No 344
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.69 E-value=0.017 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+||+|||||||...|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 345
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.69 E-value=0.0038 Score=59.49 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=26.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccce-eccccc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQV-YRGLDI 86 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qi-Yr~l~I 86 (455)
.+++|+||+|||||||...|+..+. .++++| +.+-++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEc
Confidence 5789999999999999999998774 455555 444444
No 346
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.69 E-value=0.02 Score=50.65 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=22.4
Q ss_pred cCCCCcEEEEEcCCcccHHHHHHHHHH
Q 012837 40 SSKKEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 40 ~~~~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
.......|+|+|++|||||||...|..
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 334456799999999999999999986
No 347
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.68 E-value=0.025 Score=56.81 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=22.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
..+|+|+|++|||||||...|+..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999754
No 348
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.68 E-value=0.019 Score=56.37 Aligned_cols=27 Identities=41% Similarity=0.553 Sum_probs=24.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
+..++|.||+|+|||++|..+|+.+++
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357899999999999999999999874
No 349
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.66 E-value=0.014 Score=57.50 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.8
Q ss_pred EEEEcCCcccHHHHHHHHHHHcC
Q 012837 47 IVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 47 I~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+++.||+|+|||++++.+|+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999875
No 350
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.61 E-value=0.024 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
.+...|+|+|++|||||||...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999975
No 351
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.60 E-value=0.021 Score=48.55 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=21.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+.|+|+|++|||||||...|+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 352
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.56 E-value=0.021 Score=52.62 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
.++.++.|.|++|+|||+||..+|.+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988643
No 353
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.52 E-value=0.021 Score=48.31 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 354
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.52 E-value=0.013 Score=57.19 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=23.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 46 VIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
.+.|.||+|+|||++|+.+|..++.
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCcc
Confidence 4899999999999999999998863
No 355
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.51 E-value=0.022 Score=57.50 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=24.4
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+++.+ .. .+.+|+||||||||||..+|+-.+
T Consensus 16 ~~~i~~---~~-g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 16 NVDIEF---QS-GITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEC---CS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEec---CC-CeEEEECCCCCCHHHHHHHHHHHh
Confidence 455665 23 488999999999999988877554
No 356
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.026 Score=49.95 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+...|+|+|++|||||||...|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998753
No 357
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.48 E-value=0.015 Score=62.92 Aligned_cols=38 Identities=24% Similarity=0.165 Sum_probs=24.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCcccee-ccccc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLNGEIISADSVQVY-RGLDI 86 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~qiY-r~l~I 86 (455)
+.|+|+||+|||||||...|+..+. ..+++.|+ .|.++
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~----P~~sG~vt~~g~~i 84 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVAL----PRGSGIVTRCPLVL 84 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-----------CCCSCEEE
T ss_pred CeEEEECCCCChHHHHHHHHhCCCC----CCCCCeEEEcCEEE
Confidence 3499999999999999999986431 22677764 45554
No 358
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.45 E-value=0.025 Score=48.05 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 359
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.43 E-value=0.024 Score=48.08 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999998863
No 360
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.38 E-value=0.02 Score=55.74 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=22.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
..+.|.||+|+|||+++..+|+.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999999875
No 361
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.38 E-value=0.021 Score=54.87 Aligned_cols=25 Identities=40% Similarity=0.693 Sum_probs=22.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
..+.|.||+|+|||++|..+|+.++
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3589999999999999999999874
No 362
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.35 E-value=0.029 Score=59.55 Aligned_cols=36 Identities=33% Similarity=0.463 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc-----CCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL-----NGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l-----~~~iIs~DS 77 (455)
.++++|+|+|++||||||++..||..+ ..-+|++|.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 356789999999999999999999654 244778775
No 363
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.32 E-value=0.022 Score=55.89 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
....|.|.||||+|||++|+.++...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 34578999999999999999999865
No 364
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.29 E-value=0.031 Score=61.48 Aligned_cols=31 Identities=39% Similarity=0.681 Sum_probs=26.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHHc---CCcEEEcC
Q 012837 46 VIVISGPTGAGKSQLALELAKRL---NGEIISAD 76 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~D 76 (455)
.+.|.||||+|||++|+.||+.+ +..++..|
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 69999999999999999999987 34565555
No 365
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.29 E-value=0.027 Score=48.68 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999999864
No 366
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.29 E-value=0.026 Score=52.53 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=23.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++.|+|-|+-||||||++..|++.|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46899999999999999999999884
No 367
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.28 E-value=0.024 Score=49.97 Aligned_cols=25 Identities=44% Similarity=0.519 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
++..|+|+|++|||||||...|+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999864
No 368
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.28 E-value=0.028 Score=56.59 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.++.|.||+|||||+|+..+|...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998654
No 369
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.27 E-value=0.039 Score=60.53 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc----------CCcEEEcCcc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL----------NGEIISADSV 78 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l----------~~~iIs~DS~ 78 (455)
.+..++|.||+|+|||++|..||..+ +..+++.|..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~ 251 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH
Confidence 45678999999999999999999987 5556666543
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.23 E-value=0.031 Score=50.63 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+...|+|+|++|||||||...|+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998754
No 371
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.21 E-value=0.024 Score=54.31 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=22.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcC
Q 012837 46 VIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.++|.||+|+|||++|..+|+.+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 399999999999999999999863
No 372
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.21 E-value=0.02 Score=50.78 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 373
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.21 E-value=0.028 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 374
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.15 E-value=0.027 Score=57.31 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++.+++|+||+|||||||...|+..+.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 467999999999999999999997543
No 375
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.14 E-value=0.022 Score=64.91 Aligned_cols=34 Identities=32% Similarity=0.609 Sum_probs=28.6
Q ss_pred hcccccceeeeeccCCCCcEEEEEcCCcccHHHHHHH
Q 012837 27 RRRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALE 63 (455)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~ 63 (455)
|.--|-++++++ ++.++++|+|++|||||+||..
T Consensus 32 r~hNLkni~v~i---P~~~lvv~tG~SGSGKSSLafd 65 (993)
T 2ygr_A 32 REHNLRSVDLDL---PRDALIVFTGLSGSGKSSLAFD 65 (993)
T ss_dssp CSSSCCSEEEEE---ESSSEEEEEESTTSSHHHHHTT
T ss_pred cccccCceeeec---cCCCEEEEECCCCCcHHHHHHH
Confidence 444556699999 7779999999999999999864
No 376
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.14 E-value=0.022 Score=64.73 Aligned_cols=34 Identities=32% Similarity=0.613 Sum_probs=28.7
Q ss_pred hcccccceeeeeccCCCCcEEEEEcCCcccHHHHHHH
Q 012837 27 RRRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALE 63 (455)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~ 63 (455)
|.--|-++++++ ++.++++|+|++|||||+||..
T Consensus 30 r~hNLkni~v~i---P~~~lvv~tG~SGSGKSSLafd 63 (972)
T 2r6f_A 30 RAHNLKNIDVEI---PRGKLVVLTGLSGSGKSSLAFD 63 (972)
T ss_dssp CSSSCCSEEEEE---ETTSEEEEEESTTSSHHHHHTT
T ss_pred ccccCCceeeec---cCCcEEEEECCCCCCHHHHHHH
Confidence 445555699999 7779999999999999999864
No 377
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.08 E-value=0.032 Score=62.42 Aligned_cols=33 Identities=39% Similarity=0.596 Sum_probs=27.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHc---CCcEEEcCc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRL---NGEIISADS 77 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~DS 77 (455)
..+.|.||||+|||++|+.||..+ +..++..|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 378999999999999999999988 556666553
No 378
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=94.05 E-value=0.025 Score=63.50 Aligned_cols=34 Identities=35% Similarity=0.604 Sum_probs=27.9
Q ss_pred hcccccceeeeeccCCCCcEEEEEcCCcccHHHHHHH
Q 012837 27 RRRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALE 63 (455)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~ 63 (455)
|.--|-+++.++ +++++++|+|++||||||||..
T Consensus 22 r~hNLkni~v~i---P~~~l~viTGvSGSGKSSLafd 55 (842)
T 2vf7_A 22 RQHNLKDISVKV---PRDALVVFTGVSGSGKSSLAFG 55 (842)
T ss_dssp CSTTCCSEEEEE---ESSSEEEEESSTTSSHHHHHTT
T ss_pred cccCCCCeeEEe---cCCCEEEEECCCCCCHHHHHHH
Confidence 344455688999 7789999999999999999853
No 379
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.02 E-value=0.018 Score=65.18 Aligned_cols=33 Identities=33% Similarity=0.619 Sum_probs=27.8
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHH
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALE 63 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~ 63 (455)
.--|-+++.++ ++.++++|+|++|||||+||..
T Consensus 11 ~hNLkni~~~i---p~~~l~v~tG~SGSGKSsLafd 43 (916)
T 3pih_A 11 VHNLKNITVRI---PKNRLVVITGVSGSGKSSLAMD 43 (916)
T ss_dssp STTCCSBCCEE---ETTSEEEEEESTTSSSHHHHTT
T ss_pred ccccCcceecc---CCCcEEEEECCCCCcHHHHHHH
Confidence 33455699999 7789999999999999999854
No 380
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.02 E-value=0.03 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999999863
No 381
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.00 E-value=0.028 Score=62.87 Aligned_cols=37 Identities=30% Similarity=0.479 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcCCcEEEcCccc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLNGEIISADSVQ 79 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~~~iIs~DS~q 79 (455)
.++-|.+.||+|+|||.+|+++|.+++..+++.+.-.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~ 546 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHH
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccch
Confidence 3456899999999999999999999999999887644
No 382
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.97 E-value=0.034 Score=57.76 Aligned_cols=36 Identities=33% Similarity=0.455 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc----C--CcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL----N--GEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l----~--~~iIs~DS 77 (455)
.++++|+|+|++||||||++..||..+ | .-+|.+|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 356799999999999999999998655 2 34677774
No 383
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.96 E-value=0.032 Score=48.05 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
+...|+|+|++|||||||...|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 345699999999999999999875
No 384
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.95 E-value=0.027 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999754
No 385
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.94 E-value=0.035 Score=47.29 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
No 386
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.94 E-value=0.033 Score=53.22 Aligned_cols=23 Identities=43% Similarity=0.798 Sum_probs=21.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHc
Q 012837 46 VIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+.|.||+|+|||++|..+|+.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 387
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.93 E-value=0.036 Score=48.93 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999754
No 388
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.92 E-value=0.019 Score=57.93 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++.++.|.||+|+|||+||..+|...+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G 148 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALG 148 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCC
Confidence 456789999999999999999998633
No 389
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.92 E-value=0.039 Score=55.81 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.++.|.||+|+|||+||..+|...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 390
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.90 E-value=0.041 Score=47.19 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
+...|+|+|++|||||||...|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999975
No 391
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.89 E-value=0.032 Score=63.34 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=26.8
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHH
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
++++++ ..+.+++|+||+|+||||+.+.+|.
T Consensus 654 disl~~---~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 654 DVYFEK---DKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEET---TTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeec---CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 488887 5678999999999999999998853
No 392
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.88 E-value=0.037 Score=48.52 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999998754
No 393
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.87 E-value=0.038 Score=47.81 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||+|...|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4456999999999999999999854
No 394
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.85 E-value=0.032 Score=55.49 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.5
Q ss_pred CCcEEEE--EcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVI--SGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I--~GPTGsGKStLA~~LA~~l 68 (455)
.+..++| .||+|+|||+|+..+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4457777 9999999999999999876
No 395
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.84 E-value=0.035 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999764
No 396
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.84 E-value=0.018 Score=61.95 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=28.3
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+++.+ ..+..++|.||+|+||||||+.||..++
T Consensus 53 l~~~i---~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 53 IKTAA---NQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHH---HTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccc---cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 55565 4567999999999999999999999886
No 397
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.80 E-value=0.029 Score=63.58 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=27.4
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHH
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
++++++ ..+.+++|+||+|+||||+.+.+|.
T Consensus 665 dvsl~~---~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 665 NTDLSE---DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEECT---TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cccccC---CCCeEEEEECCCCCchHHHHHHHHH
Confidence 488887 6778999999999999999998874
No 398
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.75 E-value=0.037 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999754
No 399
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.73 E-value=0.037 Score=47.32 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
..|+|+|++|||||||...|....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999997643
No 400
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.72 E-value=0.033 Score=49.11 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=21.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|+..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 456999999999999999999864
No 401
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.71 E-value=0.034 Score=51.79 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
....|+|+|++|||||||...|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3467999999999999999999853
No 402
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.70 E-value=0.043 Score=55.63 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=27.6
Q ss_pred cccccceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHH
Q 012837 28 RRRLFATSCSVASSKKEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
.|-+..+++++ ..+ +.+|+||+|||||+|...++-
T Consensus 14 ~~~~~~~~~~~---~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 14 YRNLAPGTLNF---PEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp BTTCCSEEEEC---CSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceeeeEEEE---cCC-eEEEECCCCCChhHHHHHHHH
Confidence 34455577776 344 999999999999999999875
No 403
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.70 E-value=0.031 Score=57.50 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.2
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
-.++.+++|+||+|||||||+..||-.
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 356789999999999999999987643
No 404
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.69 E-value=0.035 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999853
No 405
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.68 E-value=0.05 Score=50.18 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNG 70 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~ 70 (455)
+.+.+|+||+||||||+..+|.-.+.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 468999999999999999988776654
No 406
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.036 Score=47.32 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~ 66 (455)
..|+|+|++|||||||...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999985
No 407
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.66 E-value=0.038 Score=48.24 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 408
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.62 E-value=0.041 Score=47.80 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3456999999999999999999863
No 409
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.60 E-value=0.045 Score=53.94 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
-.++.+++|.|++|+|||+|+..+|...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999999753
No 410
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.60 E-value=0.038 Score=47.41 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.2
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 012837 46 VIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~ 66 (455)
.|+|+|++|||||||...|..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999974
No 411
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.60 E-value=0.039 Score=57.32 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
++.+|+|+||+||||||++..||..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999999876
No 412
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.54 E-value=0.054 Score=47.43 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999864
No 413
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.53 E-value=0.046 Score=47.76 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999854
No 414
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.52 E-value=0.051 Score=60.70 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=31.2
Q ss_pred hhhHHhhhhcccc-cceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 19 KPLLRQFARRRRL-FATSCSVASSKKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 19 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+|+........++ .+++++ ..+.+++|+||+|+||||+.+.+|..
T Consensus 585 HP~le~~~~~~~vlndisl~----~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 585 HPVVEQVLNEPFIANPLNLS----PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CTTHHHHCSSCCCCEEEEEC----SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccEEEccCCCceeeeccccc----CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 4555432222233 235555 46789999999999999999999863
No 415
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.51 E-value=0.033 Score=47.52 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
No 416
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.46 E-value=0.043 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999854
No 417
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.44 E-value=0.055 Score=50.81 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+++|+|+|.+||||+++|..|.+.++
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g 36 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLG 36 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcC
Confidence 557999999999999999999988785
No 418
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.44 E-value=0.037 Score=54.57 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=25.7
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++++. .+.+.+|+||||||||+|..+|.-.++
T Consensus 18 ~~l~~----~~g~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 18 SLIGF----SDRVTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEC----CSSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred eEEec----CCCcEEEECCCCCcHHHHHHHHHHHhC
Confidence 55665 234999999999999999999986654
No 419
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.41 E-value=0.051 Score=48.41 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||+|...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4456999999999999999988764
No 420
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.38 E-value=0.047 Score=56.53 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
-.++.+++|.|++|+|||+|+..+|...
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3678899999999999999999998754
No 421
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.37 E-value=0.041 Score=58.26 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+..|.|.||+|+|||+||+.||..++
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 45899999999999999999999885
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.31 E-value=0.046 Score=47.54 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
+...|+|+|++|||||||...|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 345699999999999999999975
No 423
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.31 E-value=0.051 Score=46.36 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHH
Q 012837 46 VIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~ 67 (455)
.|+|+|++|||||+|...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 424
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.29 E-value=0.047 Score=47.59 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=20.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999853
No 425
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.27 E-value=0.049 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=18.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALEL 64 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~L 64 (455)
.++.++|.||||||||++...+
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHH
Confidence 4679999999999999865544
No 426
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.25 E-value=0.041 Score=47.06 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~ 66 (455)
..|+|+|++|||||||...|..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999998863
No 427
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=93.23 E-value=0.022 Score=64.06 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=27.8
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHH-HHH
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALE-LAK 66 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~-LA~ 66 (455)
|-++++++ +++.+++|+|++|||||||++. |+.
T Consensus 513 L~~vsl~i---~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 513 LDNLDVRF---PLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp EEEEEEEE---ESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred cccceEEE---cCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 34578888 7889999999999999999986 553
No 428
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.19 E-value=0.044 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999853
No 429
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.16 E-value=0.053 Score=47.13 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||+|...+...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 430
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.16 E-value=0.046 Score=47.23 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~ 66 (455)
..|+|+|++|||||||...|..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998864
No 431
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.15 E-value=0.063 Score=46.59 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999853
No 432
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=93.14 E-value=0.036 Score=63.23 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=27.0
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHH
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALEL 64 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~L 64 (455)
|-+++|++ +.+.+++|+|++|||||||++.|
T Consensus 658 Lk~Vsl~I---~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 658 LRGIDVSF---PLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp CCSEEEEE---ESSSEEEEECSTTSSHHHHHTTT
T ss_pred ccCceEEE---CCCCEEEEEcCCCCCHHHHHHHH
Confidence 44588888 78899999999999999999874
No 433
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.11 E-value=0.056 Score=54.42 Aligned_cols=40 Identities=30% Similarity=0.302 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc---CCcEEEcCccceec
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL---NGEIISADSVQVYR 82 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l---~~~iIs~DS~qiYr 82 (455)
....++|+||||||||++++.|+..+ +..++..|...=|+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~ 76 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYK 76 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHH
Confidence 45678999999999999999887653 56666666543343
No 434
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.11 E-value=0.059 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=20.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999854
No 435
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.09 E-value=0.054 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
+...|+|+|++|||||||...|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999875
No 436
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.08 E-value=0.039 Score=48.08 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELA 65 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA 65 (455)
+...|+|+|++|||||||...|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999998875
No 437
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.07 E-value=0.061 Score=54.63 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.++.|.||+|+|||+||..+|...
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 467899999999999999999998754
No 438
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.06 E-value=0.049 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
.....|+|+|++|||||+|...|..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999998864
No 439
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.05 E-value=0.051 Score=53.24 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
.++.++.|.||+|||||+||..+|..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999975
No 440
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.02 E-value=0.059 Score=48.61 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||+|...|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999864
No 441
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.02 E-value=0.07 Score=52.73 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHHcCCc
Q 012837 44 EKVIVISGPTGAGKSQLALELAKRLNGE 71 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~l~~~ 71 (455)
+..+.+.||+|+|||++|..+|+.++++
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 4578999999999999999999998754
No 442
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=93.02 E-value=0.042 Score=56.83 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=28.6
Q ss_pred ceeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 33 ATSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 33 ~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+++++ +....|+|+|++|||||||...|+...
T Consensus 149 ~i~lel---k~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 149 RLRLEL---MLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEE---CCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeEE---cCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 378888 677889999999999999999998653
No 443
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.00 E-value=0.068 Score=49.64 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...+++|.|++|||||++|..++..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999987544
No 444
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.99 E-value=0.057 Score=46.53 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 445
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=92.98 E-value=0.034 Score=55.97 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
+++.|+|-|+-||||||++..|++.++
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999999986
No 446
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.98 E-value=0.079 Score=54.23 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
..+.+.+|+||+|||||+|...++-.++
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3467999999999999999999988765
No 447
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.95 E-value=0.043 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
...|+|+|++|||||||...|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45799999999999999999984
No 448
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.94 E-value=0.057 Score=47.76 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 449
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.89 E-value=0.058 Score=51.51 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999754
No 450
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.88 E-value=0.05 Score=47.58 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 012837 46 VIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~ 66 (455)
.|+|+|++|||||||...|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999975
No 451
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.87 E-value=0.062 Score=47.50 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...|...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998754
No 452
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.86 E-value=0.063 Score=49.44 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=22.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHHcC
Q 012837 46 VIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.|+|-|+-||||||.+..|++.|.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999884
No 453
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.85 E-value=0.067 Score=47.87 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
.+...|+|+|++|||||||...|...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999864
No 454
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.84 E-value=0.055 Score=46.92 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=20.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999753
No 455
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.83 E-value=0.075 Score=51.93 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
++.-|+|.||+|+|||.+|..||..++
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 345799999999999999999999754
No 456
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.83 E-value=0.065 Score=47.01 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
+...|+|+|++|||||||...|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999875
No 457
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.82 E-value=0.057 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999754
No 458
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.79 E-value=0.053 Score=47.66 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||+|...|...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999854
No 459
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.78 E-value=0.077 Score=52.68 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.+.+.+|+||+|||||+|..++.-.+
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999998875544
No 460
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.78 E-value=0.06 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999864
No 461
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=92.77 E-value=0.032 Score=63.42 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=27.1
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHHHHH
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLALEL 64 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA~~L 64 (455)
|-++++++ +.+.+++|+|++|||||||++.|
T Consensus 640 Lk~Vsl~I---~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 640 LKNVSVKI---PLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp CCSEEEEE---ESSSEEECCBCTTSSHHHHHTTT
T ss_pred cccceEEE---cCCCEEEEEcCCCCCHHHHHHHH
Confidence 44588888 78899999999999999999874
No 462
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.75 E-value=0.045 Score=53.75 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.4
Q ss_pred EEEEcCCcccHHHHHHHHHHH
Q 012837 47 IVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 47 I~I~GPTGsGKStLA~~LA~~ 67 (455)
|+|+||+|||||||...|+..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 499999999999999998753
No 463
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.71 E-value=0.061 Score=55.67 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=27.4
Q ss_pred eeeeeccCCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 34 TSCSVASSKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 34 ~~~~~~~~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
+++.+ .++..++|+||+|+|||+|+..||+..
T Consensus 167 ~~~pi---~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 167 LASPI---GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHSCC---BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeee---cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 45555 678899999999999999999998865
No 464
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.71 E-value=0.066 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456999999999999999999764
No 465
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.71 E-value=0.075 Score=47.30 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 466
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.67 E-value=0.066 Score=46.35 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999999764
No 467
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.67 E-value=0.065 Score=47.18 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 468
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.67 E-value=0.072 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
+...|+|+|++|||||||...|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999985
No 469
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.64 E-value=0.065 Score=50.44 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999753
No 470
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.61 E-value=0.063 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||+|...|...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999863
No 471
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.59 E-value=0.056 Score=48.97 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
....|+|+|++|||||||...|...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567999999999999999988754
No 472
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.58 E-value=0.065 Score=48.02 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 473
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.58 E-value=0.07 Score=47.41 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||+|...|...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346999999999999999999864
No 474
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.57 E-value=0.077 Score=53.46 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc-----CCcEEEcCc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL-----NGEIISADS 77 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l-----~~~iIs~DS 77 (455)
.++ ++.|.||+|+|||+|+..++... ++.++..|+
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 455 78999999999999999887654 455656554
No 475
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.55 E-value=0.064 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
+...|+|+|++|||||||...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 345699999999999999999874
No 476
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.52 E-value=0.074 Score=46.59 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 45 KVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
..|+|+|++|||||+|...|...+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4699999999999999988876654
No 477
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.50 E-value=0.06 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
....|+|+|++|||||||...|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 4457999999999999999999864
No 478
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.47 E-value=0.065 Score=48.25 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
+...|+|+|++|||||||...|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 445689999999999999998864
No 479
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=92.46 E-value=0.065 Score=60.75 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.6
Q ss_pred ccceeeeeccCCCCcEEEEEcCCcccHHHHH
Q 012837 31 LFATSCSVASSKKEKVIVISGPTGAGKSQLA 61 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~iI~I~GPTGsGKStLA 61 (455)
|-++++++ +.+.+++|+||+|||||||.
T Consensus 600 Lk~Vsl~I---~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 600 LKNIDVEI---PLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp CCSEEEEE---ESSSEEEEECSTTSSHHHHH
T ss_pred ccccceEE---cCCcEEEEEccCCCChhhhH
Confidence 44588888 77899999999999999997
No 480
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.43 E-value=0.081 Score=48.66 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
.+...|+|+|++|||||||...|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999865
No 481
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.39 E-value=0.074 Score=59.16 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=22.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+.+++|+||+||||||+.+.+|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 689999999999999999999864
No 482
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.35 E-value=0.078 Score=54.69 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 41 SKKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 41 ~~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
-.++.+++|.|++|+|||+|+..+|...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4577899999999999999999998754
No 483
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.33 E-value=0.06 Score=52.67 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
.+...|+|+|++|||||||...|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34568999999999999999999864
No 484
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.33 E-value=0.077 Score=46.86 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 485
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.30 E-value=0.08 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
+...|+|+|++|||||+|...|..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999998853
No 486
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=92.22 E-value=0.051 Score=55.67 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHcC
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRLN 69 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l~ 69 (455)
.+.+.|+|-|+-||||||++..|++.++
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999999875
No 487
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.19 E-value=0.082 Score=46.38 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||+|...|...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 488
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.18 E-value=0.075 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 489
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.16 E-value=0.076 Score=55.96 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 42 KKEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 42 ~~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
.++.+++|.||+|||||||+..+|...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998754
No 490
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.12 E-value=0.083 Score=55.63 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAK 66 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~ 66 (455)
..++|+|+||.|+|||+||..++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 467999999999999999999864
No 491
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.10 E-value=0.079 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHHc
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
....|+|+|.||||||||...|...-
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 44579999999999999999987643
No 492
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.06 E-value=0.085 Score=46.75 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 493
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.084 Score=46.79 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHHHc
Q 012837 45 KVIVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~l 68 (455)
..|+|+|++|||||||...|....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 494
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.04 E-value=0.061 Score=55.63 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEcCCcccHHHHHHHHHHHc
Q 012837 47 IVISGPTGAGKSQLALELAKRL 68 (455)
Q Consensus 47 I~I~GPTGsGKStLA~~LA~~l 68 (455)
|+|+||+|||||||...|+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 4999999999999999998643
No 495
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.03 E-value=0.082 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998753
No 496
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.01 E-value=0.1 Score=49.83 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=24.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHc---CCc--EEEcCc
Q 012837 46 VIVISGPTGAGKSQLALELAKRL---NGE--IISADS 77 (455)
Q Consensus 46 iI~I~GPTGsGKStLA~~LA~~l---~~~--iIs~DS 77 (455)
.|++.|+.|+|||+++..+|..+ |.. ++.+|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 58999999999999999998765 322 455554
No 497
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.00 E-value=0.081 Score=47.37 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHHH
Q 012837 45 KVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 45 ~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
..|+|+|++|||||||...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999763
No 498
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.98 E-value=0.093 Score=60.18 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=25.8
Q ss_pred cceeeeecc----CCCCcEEEEEcCCcccHHHHHHHHH
Q 012837 32 FATSCSVAS----SKKEKVIVISGPTGAGKSQLALELA 65 (455)
Q Consensus 32 ~~~~~~~~~----~~~~~iI~I~GPTGsGKStLA~~LA 65 (455)
.+++++++. ...+.+++|+||+|+||||+.+.++
T Consensus 773 ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 773 NDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp EEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHH
T ss_pred eeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHH
Confidence 347887621 1126899999999999999999884
No 499
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.97 E-value=0.1 Score=46.72 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHH
Q 012837 44 EKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 44 ~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
...|+|+|++|||||||...|...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999853
No 500
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.94 E-value=0.07 Score=47.16 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHH
Q 012837 43 KEKVIVISGPTGAGKSQLALELAKR 67 (455)
Q Consensus 43 ~~~iI~I~GPTGsGKStLA~~LA~~ 67 (455)
+...|+|+|++|||||||...|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999988754
Done!