Query 012838
Match_columns 455
No_of_seqs 328 out of 1914
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9b_A D-cysteine desulfhydras 100.0 2E-51 6.7E-56 416.9 27.9 299 77-436 29-339 (342)
2 1f2d_A 1-aminocyclopropane-1-c 100.0 1.7E-51 5.7E-56 417.0 21.5 307 77-440 12-337 (341)
3 1j0a_A 1-aminocyclopropane-1-c 100.0 4.8E-50 1.7E-54 403.7 27.2 297 78-441 19-323 (325)
4 1tzj_A ACC deaminase, 1-aminoc 100.0 1.1E-48 3.9E-53 395.4 23.0 305 77-438 12-334 (338)
5 4h27_A L-serine dehydratase/L- 100.0 3.5E-44 1.2E-48 366.6 21.0 292 78-444 44-357 (364)
6 3l6b_A Serine racemase; pyrido 100.0 1.4E-44 4.9E-49 367.1 17.3 284 79-434 24-321 (346)
7 2rkb_A Serine dehydratase-like 100.0 1.8E-43 6.3E-48 354.6 20.0 291 79-444 6-317 (318)
8 2gn0_A Threonine dehydratase c 100.0 5.6E-44 1.9E-48 362.1 14.7 283 79-437 39-335 (342)
9 1p5j_A L-serine dehydratase; l 100.0 3.3E-43 1.1E-47 360.3 20.3 296 78-444 44-357 (372)
10 1v71_A Serine racemase, hypoth 100.0 8.8E-44 3E-48 357.8 14.4 286 79-437 25-319 (323)
11 1ve5_A Threonine deaminase; ri 100.0 2.8E-43 9.6E-48 352.1 17.2 282 79-433 19-310 (311)
12 2d1f_A Threonine synthase; ami 100.0 1.3E-42 4.4E-47 354.4 17.5 286 77-434 35-335 (360)
13 3dwg_A Cysteine synthase B; su 100.0 6.5E-42 2.2E-46 344.7 21.2 276 79-433 14-304 (325)
14 2v03_A Cysteine synthase B; py 100.0 2.6E-41 8.9E-46 337.0 25.4 266 78-431 8-285 (303)
15 3aey_A Threonine synthase; PLP 100.0 3.7E-42 1.3E-46 349.8 19.5 287 77-434 25-326 (351)
16 4d9i_A Diaminopropionate ammon 100.0 8.9E-42 3.1E-46 352.7 22.1 292 79-436 43-386 (398)
17 2zsj_A Threonine synthase; PLP 100.0 2.8E-42 9.7E-47 350.8 17.5 286 77-435 27-329 (352)
18 1x1q_A Tryptophan synthase bet 100.0 3.7E-42 1.3E-46 357.6 18.5 335 37-436 31-411 (418)
19 2egu_A Cysteine synthase; O-ac 100.0 1.8E-41 6.2E-46 338.7 22.2 272 78-429 12-295 (308)
20 1y7l_A O-acetylserine sulfhydr 100.0 4.2E-41 1.4E-45 337.2 22.8 277 78-430 11-303 (316)
21 3iau_A Threonine deaminase; py 100.0 4.8E-42 1.7E-46 351.0 15.8 293 79-442 59-360 (366)
22 1ve1_A O-acetylserine sulfhydr 100.0 3E-41 1E-45 336.5 21.1 272 78-429 7-292 (304)
23 2o2e_A Tryptophan synthase bet 100.0 1.5E-41 5.3E-46 353.2 19.6 338 39-436 37-413 (422)
24 3tbh_A O-acetyl serine sulfhyd 100.0 2.8E-40 9.5E-45 334.0 27.8 278 78-434 19-310 (334)
25 2pqm_A Cysteine synthase; OASS 100.0 2.9E-41 9.9E-46 342.4 20.6 275 78-430 21-311 (343)
26 1v8z_A Tryptophan synthase bet 100.0 1.3E-41 4.5E-46 350.0 17.7 338 41-436 8-382 (388)
27 4aec_A Cysteine synthase, mito 100.0 2E-40 6.7E-45 344.1 25.6 280 77-434 120-413 (430)
28 3ss7_X D-serine dehydratase; t 100.0 5.6E-41 1.9E-45 350.9 21.6 304 79-442 77-440 (442)
29 1qop_B Tryptophan synthase bet 100.0 1.5E-41 5.2E-46 350.7 15.6 340 37-436 9-387 (396)
30 2q3b_A Cysteine synthase A; py 100.0 5.4E-40 1.9E-44 328.7 26.2 279 78-434 14-305 (313)
31 1z7w_A Cysteine synthase; tran 100.0 9.1E-40 3.1E-44 328.4 26.6 274 78-429 13-299 (322)
32 3vc3_A Beta-cyanoalnine syntha 100.0 2.1E-39 7.1E-44 328.9 26.2 277 79-433 34-324 (344)
33 1tdj_A Biosynthetic threonine 100.0 2E-40 6.8E-45 350.5 18.7 291 79-436 30-325 (514)
34 1wkv_A Cysteine synthase; homo 100.0 1E-39 3.5E-44 335.8 21.9 305 40-435 54-378 (389)
35 1o58_A O-acetylserine sulfhydr 100.0 2E-39 6.8E-44 323.4 23.0 268 77-429 17-296 (303)
36 1jbq_A B, cystathionine beta-s 100.0 1.3E-38 4.5E-43 331.7 23.9 285 77-429 105-400 (435)
37 1e5x_A Threonine synthase; thr 100.0 3.6E-37 1.2E-41 325.5 27.8 290 78-437 128-443 (486)
38 3pc3_A CG1753, isoform A; CBS, 100.0 9.2E-38 3.1E-42 333.5 22.8 280 78-428 58-351 (527)
39 1vb3_A Threonine synthase; PLP 100.0 2.2E-31 7.6E-36 277.3 18.8 282 77-430 80-380 (428)
40 1kl7_A Threonine synthase; thr 99.9 8.9E-26 3E-30 239.2 22.6 287 78-429 94-452 (514)
41 4f4f_A Threonine synthase; str 99.9 9.2E-26 3.2E-30 236.4 17.7 269 107-431 101-419 (468)
42 3v7n_A Threonine synthase; ssg 99.9 5.6E-25 1.9E-29 230.8 16.2 277 108-436 115-444 (487)
43 4fn4_A Short chain dehydrogena 32.7 2.6E+02 0.0089 25.8 10.2 13 139-151 6-18 (254)
44 3dwg_A Cysteine synthase B; su 29.4 3.7E+02 0.013 25.5 14.9 37 288-326 71-107 (325)
45 3l6u_A ABC-type sugar transpor 29.0 88 0.003 28.4 6.2 35 287-323 194-229 (293)
46 3k1y_A Oxidoreductase; structu 27.5 71 0.0024 28.4 5.0 59 375-433 71-133 (191)
47 3efb_A Probable SOR-operon reg 25.6 1.9E+02 0.0066 26.8 8.0 89 254-347 28-120 (266)
48 3l49_A ABC sugar (ribose) tran 25.5 1.3E+02 0.0043 27.3 6.6 34 288-323 191-225 (291)
49 3k9c_A Transcriptional regulat 25.2 1.2E+02 0.004 27.8 6.4 36 287-324 184-223 (289)
50 4g81_D Putative hexonate dehyd 24.5 4.2E+02 0.014 24.4 10.2 13 139-151 8-20 (255)
51 1vp8_A Hypothetical protein AF 23.0 2.2E+02 0.0076 25.7 7.2 69 123-192 26-104 (201)
52 3k4h_A Putative transcriptiona 22.8 1.3E+02 0.0043 27.3 6.0 35 287-323 191-229 (292)
53 4ei7_A Plasmid replication pro 22.7 3.1E+02 0.01 27.3 9.1 60 262-325 84-151 (389)
54 8abp_A L-arabinose-binding pro 22.6 1.3E+02 0.0044 27.5 6.1 37 287-323 194-233 (306)
55 3dbi_A Sugar-binding transcrip 22.0 1.3E+02 0.0045 28.2 6.1 35 287-323 241-279 (338)
56 3o74_A Fructose transport syst 21.8 1.9E+02 0.0064 25.7 7.0 44 274-323 169-216 (272)
57 3g85_A Transcriptional regulat 21.6 1.4E+02 0.0049 26.9 6.1 34 287-322 187-224 (289)
58 3qk7_A Transcriptional regulat 20.6 1.4E+02 0.0048 27.3 5.9 36 287-324 186-225 (294)
No 1
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=100.00 E-value=2e-51 Score=416.89 Aligned_cols=299 Identities=22% Similarity=0.289 Sum_probs=241.8
Q ss_pred ccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHHH-
Q 012838 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA- 155 (455)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNha- 155 (455)
..++|||+++ ++|+ +.+ |.+||+|+||+|++.+||||+|++.+++.+|++.|+++||++|+++|||+
T Consensus 29 ~~~~TPL~~~--~~l~-~~~---------g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~~~vv~~s~tsGN~g~ 96 (342)
T 4d9b_A 29 IGAPTPLEYL--PRLS-DYL---------GREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVR 96 (342)
T ss_dssp SCSCCCEEEC--HHHH-HHH---------TSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTCCEEEEEEETTCHHHH
T ss_pred cCCCCceeEh--hhhH-Hhh---------CCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCCCEEEEcCCcccHHHH
Confidence 3499999999 8887 433 57999999999854469999999999999999999999999887778888
Q ss_pred ----HHHHhCCeEEEEecCCCcccc-----chhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhh
Q 012838 156 ----TAVERGLKSHLLLRGEQPQIL-----TGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIF 225 (455)
Q Consensus 156 ----~Aa~~Gl~~~iv~~~~~~~~~-----~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~ 225 (455)
+|+++|++|+||||+..+... .+|+.+++.||| |+.+++.. ++++..+..++
T Consensus 97 alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~~a~---------------- 158 (342)
T 4d9b_A 97 QTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALT--DPDAQLQTLAT---------------- 158 (342)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCS--SHHHHHHHHHH----------------
T ss_pred HHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchh--hHHHHHHHHHH----------------
Confidence 356999999999998876431 246677899999 99998752 22233222121
Q ss_pred HHHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHH
Q 012838 226 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 305 (455)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl 305 (455)
++.+.++.+|++|+++.||.+.+||.+++.||++|+... ..||+||+|+|||||++|+
T Consensus 159 ---------------------~l~~~~~~~~~~p~~~~n~~~~~G~~t~~~EI~~q~~~~-~~~d~vv~~vGtGGt~aGi 216 (342)
T 4d9b_A 159 ---------------------RIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEEV-VGLSSVVVASGSAGTHAGL 216 (342)
T ss_dssp ---------------------HHHHTTCCEEECCGGGCSHHHHHHHHHHHHHHHHHHTTT-CCCCEEEEEESSSHHHHHH
T ss_pred ---------------------HHHhcCCceEEeCCCCCChHHHHHHHHHHHHHHHHHhcc-CCCCEEEEeCCCCHHHHHH
Confidence 122345578999999999999999999999999997311 3799999999999999999
Q ss_pred HHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHH
Q 012838 306 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 385 (455)
Q Consensus 306 ~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r 385 (455)
+.+|+++++.++|||||++++.....+....+.+.+++.++.. ....+.+++++.++.|.|+|+|++++++
T Consensus 217 ~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~t~a~gl~~~---------~~~~~~~~~~~~d~~~~V~d~e~~~a~~ 287 (342)
T 4d9b_A 217 AVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAGQLALT---------ATADIHLWDDYFAPGYGVPNDAGMEAVK 287 (342)
T ss_dssp HHHHHHHCTTSEEEEEESSSCHHHHHHHHHHHHHHHHHHTTCC---------CCCCCEEECTTSTTCTTCCCHHHHHHHH
T ss_pred HHHHHhhCCCCeEEEEEecCcHHHHHHHHHHHHHHHHHHcCCC---------CccceEEEecCCCceEecCCHHHHHHHH
Confidence 9999999999999999999987655444333444455555431 1235667788899999999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCCcchhhhH
Q 012838 386 RIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFGLA 436 (455)
Q Consensus 386 ~La~~eGI~veP~ysgaalAgl~~l~~~~-~~~g~~VV~I~TGG~~~~~~~~ 436 (455)
+|++++||++||+|+|++++++++++++. +.++++||+||||||+|++++.
T Consensus 288 ~l~~~~gi~~epsYsa~a~aa~~~~~~~~~~~~~~~Vv~i~tGGn~~~~~~~ 339 (342)
T 4d9b_A 288 LLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTGGAPALFAYH 339 (342)
T ss_dssp HHHHHHSCCCCTTTHHHHHHHHHHHHHHTCSSSSSCEEEEECCCTTHHHHHS
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHcCCCCCCCeEEEEECCCccchhhcc
Confidence 99999999999999999999999988753 6678999999999999998853
No 2
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=100.00 E-value=1.7e-51 Score=417.01 Aligned_cols=307 Identities=24% Similarity=0.279 Sum_probs=242.5
Q ss_pred ccCCCCCcccccCCCCCCcCCCcccccCCC-ceEEEEeCCCC-CCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHH
Q 012838 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLL-HPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAH 154 (455)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g-~~lylKrEdl~-~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNh 154 (455)
..++|||+++ ++|+ +.+| | .+||+||||+| ++.+||||+|++.++|.+|+++|.++||++|+++|||
T Consensus 12 ~~~~TPL~~~--~~l~-~~~~--------g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~~~vv~~G~ssGN~ 80 (341)
T 1f2d_A 12 TFGPSPISNL--NRLS-QHLG--------SKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQ 80 (341)
T ss_dssp SSSSCCEEEC--HHHH-HHTT--------TCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCSEEEEEEETTCHH
T ss_pred CCCCCcceeH--HhHH-HhhC--------CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHH
Confidence 3489999999 8887 4331 4 79999999997 6557999999999999999999999999988888999
Q ss_pred H-----HHHHhCCeEEEEecCCCc-----cc---cchhhHHHHhCCc-EEEeCCCchhh-HHHHHHHHhhhhhcCCCCcc
Q 012838 155 A-----TAVERGLKSHLLLRGEQP-----QI---LTGYNLISTIYGK-VTYVPRTHYAH-RIEMLKSYANLVAGNNGDVV 219 (455)
Q Consensus 155 a-----~Aa~~Gl~~~iv~~~~~~-----~~---~~~~~~~~~~~GA-V~~v~~~~~~~-~~~~~~~~A~~la~~~g~~~ 219 (455)
+ +|+.+|++|+||||+..+ .. +.+|+.+++.||| |+.+++..+.. .+++.+ .+
T Consensus 81 g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~-~a----------- 148 (341)
T 1f2d_A 81 TRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFAN-AL----------- 148 (341)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHH-HH-----------
T ss_pred HHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHH-HH-----------
Confidence 8 356999999999998876 21 1347778999999 99998753311 011111 11
Q ss_pred chhhhhHHHHHhhhhhccccccccccccccccCCeEEEecCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCC
Q 012838 220 WCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGT 298 (455)
Q Consensus 220 w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g-~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGt 298 (455)
+++.++.+++|++|.+ +.||....||.+++.||++|+...+..||+||+|+||
T Consensus 149 --------------------------~~l~~~~~~~~~i~~~~~~np~~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGt 202 (341)
T 1f2d_A 149 --------------------------QELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVT 202 (341)
T ss_dssp --------------------------HHHHHTTCCEEEECGGGTTSTTTTTHHHHHHHHHHHHHHHHTCCCSEEEEEESS
T ss_pred --------------------------HHHHhcCCcEEEeCCCcCCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEecCc
Confidence 1122334456888999 9999999999999999999983112379999999999
Q ss_pred cchHHHHHHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCH
Q 012838 299 GTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFE 378 (455)
Q Consensus 299 Ggt~~Gl~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ 378 (455)
|||++|++.+|+++++.++|+|||++++..........+....++.++... .+ ..+.+++++.++.|.|+|+
T Consensus 203 Ggt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~~~~ig~~~---~~-----~~~~~~~~~~~~~~~v~d~ 274 (341)
T 1f2d_A 203 GSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEH---EF-----KDFTLDTRFAYPCYGVPNE 274 (341)
T ss_dssp SHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCCC---CC-----SCCCEECTTSTTBTTBCCH
T ss_pred hHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHcCCCC---Cc-----CeEEEecCcccceEecCCH
Confidence 999999999999999999999999999876554433333334444444211 11 2455678889999999999
Q ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCCcchhhhHHHHH
Q 012838 379 GEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFGLAQRYK 440 (455)
Q Consensus 379 ei~~a~r~La~~eGI~veP~ysgaalAgl~~l~~~~-~~~g~~VV~I~TGG~~~~~~~~~ry~ 440 (455)
|+++++++|++++||++||+|+|++++++++++++. +.++++||+|||||+++++.+.++|+
T Consensus 275 e~~~a~~~l~~~egi~~ep~~sa~alaa~~~~~~~~~~~~~~~Vv~i~tGG~~~~~~~~~~~~ 337 (341)
T 1f2d_A 275 GTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHLGGAPALSAYSSFFP 337 (341)
T ss_dssp HHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEECCCGGGGGGGGGGCC
T ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHhCCCCCCCeEEEEECCchHHhhhhHHHhc
Confidence 999999999999999999999999999999987753 55789999999999999999876653
No 3
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=100.00 E-value=4.8e-50 Score=403.75 Aligned_cols=297 Identities=25% Similarity=0.301 Sum_probs=237.1
Q ss_pred cCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHHH--
Q 012838 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA-- 155 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNha-- 155 (455)
.++|||+++ ++|+ +.+ |.+||+|+||+|++.+||||+|++.+++.+|++.|.++|||+|+++|||+
T Consensus 19 ~~~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~~~vv~~G~ssGN~g~a 86 (325)
T 1j0a_A 19 PWETPIQYL--PNIS-REI---------GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFV 86 (325)
T ss_dssp CSCCCEEEC--HHHH-HHH---------TSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHH
T ss_pred cCCCCceEh--hhhh-hhh---------CCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHH
Confidence 389999999 7776 322 67999999999853468999999999999999999999999988889998
Q ss_pred ---HHHHhCCeEEEEecCCC-ccccchhhHHHHhCCc-EEEeCCCchhhH-HHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012838 156 ---TAVERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVPRTHYAHR-IEMLKSYANLVAGNNGDVVWCNEIFEASL 229 (455)
Q Consensus 156 ---~Aa~~Gl~~~iv~~~~~-~~~~~~~~~~~~~~GA-V~~v~~~~~~~~-~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 229 (455)
+|+.+|++|+||||+.. + ..|..+++.||| |+.+++..+... .++.+ .|
T Consensus 87 lA~~a~~~G~~~~iv~p~~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~-~a--------------------- 141 (325)
T 1j0a_A 87 TGLAAKKLGLDAILVLRGKEEL---KGNYLLDKIMGIETRVYDAKDSFELMKYAEE-IA--------------------- 141 (325)
T ss_dssp HHHHHHHTTCEEEEEEESCCCS---CHHHHHHHHTTCEEEEESCCSTTTHHHHHHH-HH---------------------
T ss_pred HHHHHHHhCCcEEEEECCCCCC---CchHHHHHHCCCEEEEeCcchhhhhhHHHHH-HH---------------------
Confidence 35699999999999876 4 346677899999 999987532210 11111 11
Q ss_pred HhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHH
Q 012838 230 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 309 (455)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~ 309 (455)
.++.++.+.+|++|+|+.||.+.+||.+++.||++|+ + ..||+||+|+|||||++|++++|
T Consensus 142 ----------------~~l~~~~~~~~~~p~~~~n~~~~~g~~t~~~Ei~~q~--~-~~~d~vv~~vGtGGt~~Gi~~~l 202 (325)
T 1j0a_A 142 ----------------EELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQS--E-VKFDSIVVAAGSGGTLAGLSLGL 202 (325)
T ss_dssp ----------------HHHTTSSCCEEEECGGGCSHHHHTHHHHHHHHHHHHC--C-CCCSEEEEEESSSHHHHHHHHHH
T ss_pred ----------------HHHHHcCCceEEEcCCCCCHHHHHHHHHHHHHHHHhh--C-CCCCEEEEeCCchHhHHHHHHHH
Confidence 1223445567899999999999999999999999996 3 37999999999999999999999
Q ss_pred HhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHHHHHH
Q 012838 310 ICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 389 (455)
Q Consensus 310 ~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~La~ 389 (455)
++.++.++|+|||++++..........+.+++...+|. + ....+.+++++.++ |.|+|+|+++++++|++
T Consensus 203 k~~~~~~~vigVe~~~~~~~~~~~~~t~~~~~~~~~g~---~------~~~~~~~~~~~~~~-~~v~d~e~~~a~~~l~~ 272 (325)
T 1j0a_A 203 SILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGV---K------VEVRPELYDYSFGE-YGKITGEVAQIIRKVGT 272 (325)
T ss_dssp HHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTC---C------CCSCCEEEECSTTS-TTCCCHHHHHHHHHHHH
T ss_pred HhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHhcCC---C------CCCCcEEecCcccC-CCCCCHHHHHHHHHHHH
Confidence 99999999999999998665544333344444333331 1 01234567788899 99999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhhHHHHHH
Q 012838 390 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKS 441 (455)
Q Consensus 390 ~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~~~~~~~~~ry~~ 441 (455)
++||++||+|+|++++++++++++... +++||+|||||+.+++.+.+++.+
T Consensus 273 ~~gi~~ep~ssa~a~aa~~~~~~~~~~-~~~Vv~i~tGG~~~~~~~~~~~~~ 323 (325)
T 1j0a_A 273 REGIILDPVYTGKAFYGLVDLARKGEL-GEKILFIHTGGISGTFHYGDKLLS 323 (325)
T ss_dssp HHSCCCCTTTHHHHHHHHHHHHHTTCS-CSEEEEEECCCHHHHHHTHHHHHT
T ss_pred hhCcccccchHHHHHHHHHHHHHcCCC-CCcEEEEECCCchhhhchHHHHhh
Confidence 999999998899999999998765322 899999999999999998776644
No 4
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=100.00 E-value=1.1e-48 Score=395.41 Aligned_cols=305 Identities=22% Similarity=0.261 Sum_probs=236.3
Q ss_pred ccCCCCCcccccCCCCCCcCCCcccccCCC-ceEEEEeCCCC-CCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHH
Q 012838 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLL-HPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAH 154 (455)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g-~~lylKrEdl~-~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNh 154 (455)
..++|||+++ ++|+ +.++ | .+||+|+||+| ++.+||||+|++.+++.+|++.|.++||++|+++|||
T Consensus 12 ~~~~TPL~~~--~~l~-~~~~--------g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~~~vv~~GassGN~ 80 (338)
T 1tzj_A 12 TFGPTPIQPL--ARLS-KHLG--------GKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQ 80 (338)
T ss_dssp SSSSCCEEEC--HHHH-HHTT--------SSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTCCEEEEEEETTCHH
T ss_pred CCCCCccEEH--HHHH-HhhC--------CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCchhHH
Confidence 3489999999 8877 4331 4 79999999996 5237999999999999999999999999988788898
Q ss_pred H-----HHHHhCCeEEEEecCCCccc-----cchhhHHHHhCCc-EEEeCCCchhhH-HHHHHHHhhhhhcCCCCccchh
Q 012838 155 A-----TAVERGLKSHLLLRGEQPQI-----LTGYNLISTIYGK-VTYVPRTHYAHR-IEMLKSYANLVAGNNGDVVWCN 222 (455)
Q Consensus 155 a-----~Aa~~Gl~~~iv~~~~~~~~-----~~~~~~~~~~~GA-V~~v~~~~~~~~-~~~~~~~A~~la~~~g~~~w~~ 222 (455)
+ +|+.+|++|+||||+..+.. +.+++.+++.||| |+.+++. +++. .......+
T Consensus 81 g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~-~~~~~~~~~~~~a-------------- 145 (338)
T 1tzj_A 81 TRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG-FDIGFRRSWEDAL-------------- 145 (338)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC--------CHHHHHH--------------
T ss_pred HHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCc-chhhHHHHHHHHH--------------
Confidence 8 35599999999999877543 2246677899999 9999875 3321 00001111
Q ss_pred hhhHHHHHhhhhhccccccccccccccccCCeEEEecCC-CCcHHHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeCCCcc
Q 012838 223 EIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGDAVALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGT 300 (455)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g-~~np~~~~G~~t~~~Ei~eq~~-~g~~~pD~vvvpvGtGg 300 (455)
+++.+..+.+|++|.| +.||...+||.+++.||++|+. .+ ..||+||+|+||||
T Consensus 146 -----------------------~~l~~~~~~~~~~p~~~~~n~~~~~g~~t~~~Ei~~q~~~~~-~~~d~vv~~vG~GG 201 (338)
T 1tzj_A 146 -----------------------ESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELG-FKFDYVVVCSVTGS 201 (338)
T ss_dssp -----------------------HHHHHTTCCEEECCGGGTSSTTTTTHHHHHHHHHHHHHHHHT-SCCSEEEEEESSSH
T ss_pred -----------------------HHHHhcCCceEEeCCCcCCCcccHHHHHHHHHHHHHHHHhcC-CCCCEEEEecCCcH
Confidence 1122334567889999 9999999999999999999983 23 36999999999999
Q ss_pred hHHHHHHHHHhc-CCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHH
Q 012838 301 TAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEG 379 (455)
Q Consensus 301 t~~Gl~~g~~~~-g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e 379 (455)
|++|++.+|+++ ++. +|+|||++++.....+....+.+.+++.++... + ++...+.+++++.++.|.|+|+|
T Consensus 202 t~~Gi~~~~k~~g~~~-~vigve~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-----~~~~~~~~~~~~~~~~~~v~d~e 274 (338)
T 1tzj_A 202 TQAGMVVGFAADGRAD-RVIGVDASAKPAQTREQITRIARQTAEKVGLER-D-----IMRADVVLDERFAGPEYGLPNEG 274 (338)
T ss_dssp HHHHHHHHHHTTTCGG-GEEEEECSSCHHHHHHHHHHHHHHHHHHHTCSS-C-----CCGGGCEEECTTSCSBTTBCCHH
T ss_pred HHHHHHHHHHhhCCCC-eEEEEEccCchHHHHHHHHHHHHHHHHHcCCCC-C-----CCcccEEEecCcccceeecCCHH
Confidence 999999999988 677 999999999876544433333344444444221 1 12345667788889999999999
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCCcchhhhHHH
Q 012838 380 EIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFGLAQR 438 (455)
Q Consensus 380 i~~a~r~La~~eGI~veP~ysgaalAgl~~l~~~~-~~~g~~VV~I~TGG~~~~~~~~~r 438 (455)
+++++++|++++||++||+|+|++++++++++++. +.++++||+|||||+.+++.+.+.
T Consensus 275 ~~~a~~~l~~~~gi~~ep~ysa~alaa~~~~~~~~~~~~~~~Vv~i~tGG~~~~~~~~~~ 334 (338)
T 1tzj_A 275 TLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAHLGGVPALNGYSFI 334 (338)
T ss_dssp HHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEECCCGGGGGGGTGG
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCcccccchHHH
Confidence 99999999999999999998999999999987653 557899999999999999987543
No 5
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=100.00 E-value=3.5e-44 Score=366.57 Aligned_cols=292 Identities=16% Similarity=0.168 Sum_probs=217.9
Q ss_pred cCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHHH--
Q 012838 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA-- 155 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNha-- 155 (455)
.++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.+|.+.|.++||++++ |||+
T Consensus 44 ~~~TPL~~~--~~l~-~~~---------g~~v~~K~E~~~-p-tGSfK~Rga~~~i~~a~~~g~~~vv~aSs--GN~g~a 107 (364)
T 4h27_A 44 HVKTPIRDS--MALS-KMA---------GTSVYLKMDSAQ-P-SGSFKIRGIGHFCKRWAKQGCAHFVCSSS--GNAGMA 107 (364)
T ss_dssp SCCCCEEEE--HHHH-HHH---------TSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCEEEECCS--SHHHHH
T ss_pred CCcCCeEEC--hhhH-HHh---------CCEEEEEeCCCC-C-CCCHHHHHHHHHHHHHHhcCCCEEEEeCC--ChHHHH
Confidence 379999999 8887 433 679999999997 8 79999999999999999999999998655 6666
Q ss_pred ---HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012838 156 ---TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 231 (455)
Q Consensus 156 ---~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 231 (455)
+|+++|++|+||||+..+. .++.+++.||| |+.++++ |++..+. |++
T Consensus 108 lA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~Vv~v~~~-~~~a~~~----a~~--------------------- 158 (364)
T 4h27_A 108 AAYAARQLGVPATIVVPGTTPA---LTIERLKNEGATVKVVGEL-LDEAFEL----AKA--------------------- 158 (364)
T ss_dssp HHHHHHHHTCCEEEEEETTSCH---HHHHHHHTTTCEEEEECSS-TTHHHHH----HHH---------------------
T ss_pred HHHHHHHhCCceEEEECCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHH---------------------
Confidence 3569999999999988653 35567899999 9999864 6643322 111
Q ss_pred hhhhccccccccccccccccC-CeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHHH
Q 012838 232 QKSRASCLGQMDAHKGIDNCR-KKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 310 (455)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~-~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~~ 310 (455)
+.++. ...|+.| +.||...+|+.+++.||++|+ + ..||+||+|+|||||++|++.+++
T Consensus 159 ----------------l~~~~~~~~~~~~--~~np~~~~G~~t~~~Ei~~q~--~-~~~D~vvvpvG~GG~~aGi~~~~k 217 (364)
T 4h27_A 159 ----------------LAKNNPGWVYIPP--FDDPLIWEGHASIVKELKETL--W-EKPGAIALSVGGGGLLCGVVQGLQ 217 (364)
T ss_dssp ----------------HHHHSTTEEEECS--SCSHHHHHHHTHHHHHHHHHC--S-SCCSEEEEECSSSHHHHHHHHHHH
T ss_pred ----------------HHHhCCCeEEeCC--CCCHHHHHHHHHHHHHHHHHh--C-CCCCEEEEcCCccHHHHHHHHHHH
Confidence 12222 3344433 479999999999999999996 3 269999999999999999999999
Q ss_pred hcC-CCceEEEEeccCChhhHHHhhHh-H-----HHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHH
Q 012838 311 CLG-LPWEVTAIALVDTIDGYKQQEKN-L-----ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 383 (455)
Q Consensus 311 ~~g-~~~~vigVe~~g~~~~~~~~~~~-l-----~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a 383 (455)
+++ ++++|+|||++++.......... . ...+++.++ .+.+.+..+.+++++.+..+.|+|+|++++
T Consensus 218 ~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~-------~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a 290 (364)
T 4h27_A 218 EVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALG-------VKTVGAQALKLFQEHPIFSEVISDQEAVAA 290 (364)
T ss_dssp HTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGC-------CSSCCHHHHHHHTTSCEEEEEECHHHHHHH
T ss_pred HhCCCCCeEEEEecCCChHHHHHHHCCCcccCCCCCcHHHHhC-------CCCCcHHHHHHHHhcCCEEEEECHHHHHHH
Confidence 887 78999999999976533221100 0 000111111 111223456666666777788999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHH-----HHhhhc-CCC-CCeEEEEecCCC-cchhhhHHHHHHHhc
Q 012838 384 CHRIAQLTGILVDPVYTLAAWEMAT-----LLSDEK-LKQ-DADVVMLHTGGT-LGMFGLAQRYKSSFH 444 (455)
Q Consensus 384 ~r~La~~eGI~veP~ysgaalAgl~-----~l~~~~-~~~-g~~VV~I~TGG~-~~~~~~~~ry~~~~~ 444 (455)
+++|+++|||++||+ +|+++|+++ ++.+++ +++ +++||+|||||+ .++..+ ++|+..++
T Consensus 291 ~~~l~~~egi~~eps-~aaalaa~~~~k~~~l~~~g~~~~~~~~Vv~v~tGG~~~d~~~l-~~~~~~~~ 357 (364)
T 4h27_A 291 IEKFVDDEKILVEPA-CGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQL-RALKEQLG 357 (364)
T ss_dssp HHHHHHHHCCCCCHH-HHHHHHHHHTTHHHHHHHTTSSCSSCCEEEEEECBCSSCCHHHH-HHHHHHTT
T ss_pred HHHHHHHCCCeEccc-HHHHHHHHHhhhhHHhhhccCcCCCCCeEEEEECCCCCCCHHHH-HHHHHHhc
Confidence 999999999999996 789999885 444433 433 689999999997 886664 56666664
No 6
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=100.00 E-value=1.4e-44 Score=367.09 Aligned_cols=284 Identities=13% Similarity=0.099 Sum_probs=213.7
Q ss_pred CCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhC----CCCEEEecCchhHHH
Q 012838 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDH----IVTDLVTCGGCQSAH 154 (455)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~----G~~~VVt~G~~~sNh 154 (455)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.+|.+. +.++||++++ |||
T Consensus 24 ~~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tGSfK~Rga~~~i~~a~~~g~~~~~~~vv~~Ss--GNh 87 (346)
T 3l6b_A 24 HLTPVLTS--SILN-QLT---------GRNLFFKCELFQ-K-TGSFKIRGALNAVRSLVPDALERKPKAVVTHSS--GNH 87 (346)
T ss_dssp CCCCEECC--HHHH-HHH---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHHTTC-----CCCSCEEEECS--SHH
T ss_pred CCCCeEEc--hhhH-HHh---------CCeEEEEeCCCC-C-CCCcHHHHHHHHHHHHHHhccccCCCEEEEeCC--CHH
Confidence 79999999 8887 433 679999999997 8 8999999999999998774 6678997644 666
Q ss_pred H-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHH
Q 012838 155 A-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 228 (455)
Q Consensus 155 a-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~ 228 (455)
+ +|+++|++|+||||+..+. .+..+++.||| |+.|++. ++++.+. |+++
T Consensus 88 g~a~A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~v~~~-~~~~~~~----a~~l----------------- 142 (346)
T 3l6b_A 88 GQALTYAAKLEGIPAYIVVPQTAPD---CKKLAIQAYGASIVYCEPS-DESRENV----AKRV----------------- 142 (346)
T ss_dssp HHHHHHHHHHTTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECSS-HHHHHHH----HHHH-----------------
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCC-HHHHHHH----HHHH-----------------
Confidence 6 4669999999999988653 35667899999 9999874 5543222 2111
Q ss_pred HHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHH
Q 012838 229 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLG 308 (455)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g 308 (455)
.+..+..|+.|.+ ||....||.+++.||++|+ +.||+||+|+|||||++|++.+
T Consensus 143 --------------------~~~~~~~~i~~~~--np~~~~g~~t~~~Ei~~q~----~~~d~vvv~vG~GG~~aGi~~~ 196 (346)
T 3l6b_A 143 --------------------TEETEGIMVHPNQ--EPAVIAGQGTIALEVLNQV----PLVDALVVPVGGGGMLAGIAIT 196 (346)
T ss_dssp --------------------HHHHTCEECCSSS--CHHHHHHHHHHHHHHHHHS----TTCCEEEEECSSSHHHHHHHHH
T ss_pred --------------------HHhcCCEEECCCC--ChHHHHHHHHHHHHHHHhC----CCCCEEEEecCccHHHHHHHHH
Confidence 1122345555543 8999999999999999996 3799999999999999999999
Q ss_pred HHhcCCCceEEEEeccCChhhHHHhhHhH-HH--HHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHH
Q 012838 309 AICLGLPWEVTAIALVDTIDGYKQQEKNL-IS--EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 385 (455)
Q Consensus 309 ~~~~g~~~~vigVe~~g~~~~~~~~~~~l-~~--~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r 385 (455)
|+++++.++|||||++++.....+..... .. ...+++..+ +. ..++...+.+++++.++.+.|+|+|++++++
T Consensus 197 ~k~~~p~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~~tia~g---l~-~~~g~~~~~~~~~~~d~~~~V~d~e~~~a~~ 272 (346)
T 3l6b_A 197 VKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADG---VK-SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQ 272 (346)
T ss_dssp HHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGG---GC-SCCCTTHHHHHHHHCCEEEEECHHHHHHHHH
T ss_pred HHHhCCCCEEEEEecCCCHHHHHHHHcCCccccCCCCCchhhh---cc-CCCcHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 99999999999999998764332211000 00 000011111 00 1123345666778889999999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCCcchhh
Q 012838 386 RIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFG 434 (455)
Q Consensus 386 ~La~~eGI~veP~ysgaalAgl~~l~~~~-~~~g~~VV~I~TGG~~~~~~ 434 (455)
+|++++||++||+ +|++++++++..... ..++++||+||||||.++..
T Consensus 273 ~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~~Vv~i~sGG~~d~~~ 321 (346)
T 3l6b_A 273 LVWERMKLLIEPT-AGVGVAAVLSQHFQTVSPEVKNICIVLSGGNVDLTS 321 (346)
T ss_dssp HHHHHHCCCCCHH-HHHHHHHHHSGGGGGSCTTCCEEEEEECBCCCCTTG
T ss_pred HHHHHCCcEEcHH-HHHHHHHHHHhhhhhccCCCCeEEEEcCCCCCCHHH
Confidence 9999999999997 899999998654333 35689999999999999877
No 7
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=354.64 Aligned_cols=291 Identities=14% Similarity=0.103 Sum_probs=216.2
Q ss_pred CCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHHH---
Q 012838 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA--- 155 (455)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNha--- 155 (455)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||||++.+++.+|.+.|.++||++++ |||+
T Consensus 6 ~~TPL~~~--~~l~-~~~---------g~~v~~K~E~~~-p-tgS~K~R~a~~~l~~a~~~g~~~vv~~ss--GN~g~al 69 (318)
T 2rkb_A 6 VVTPLLES--WALS-QVA---------GMPVFLKCENVQ-P-SGSFKIRGIGHFCQEMAKKGCRHLVCSSG--GNAGIAA 69 (318)
T ss_dssp CCCCEEEE--HHHH-HHH---------TSCEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCEEEECCC--SHHHHHH
T ss_pred ccCCceeh--HhhH-HHh---------CCeEEEEecCCC-C-CCCHHHHHHHHHHHHHHHcCCCEEEEECC--chHHHHH
Confidence 79999999 8877 333 578999999996 8 79999999999999999999999998654 6666
Q ss_pred --HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhh
Q 012838 156 --TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 232 (455)
Q Consensus 156 --~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~ 232 (455)
+|+++|++|+||||+..+. .+..+++.||| |+.++++ |++..+. |++
T Consensus 70 A~~a~~~G~~~~i~~p~~~~~---~k~~~~~~~Ga~V~~~~~~-~~~~~~~----a~~---------------------- 119 (318)
T 2rkb_A 70 AYAARKLGIPATIVLPESTSL---QVVQRLQGEGAEVQLTGKV-WDEANLR----AQE---------------------- 119 (318)
T ss_dssp HHHHHHHTCCEEEEECTTCCH---HHHHHHHHTTCEEEECCSS-HHHHHHH----HHH----------------------
T ss_pred HHHHHHcCCCEEEEECCCCcH---HHHHHHHhcCCEEEEECCC-HHHHHHH----HHH----------------------
Confidence 3569999999999988653 35567899999 9998864 6543222 111
Q ss_pred hhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHHHhc
Q 012838 233 KSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL 312 (455)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~~~~ 312 (455)
+.+..+..|+.| +.||...+||.+++.||++|+ + ..||+||+|+|||||++|++.+|+++
T Consensus 120 ---------------~~~~~~~~~~~~--~~n~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi~~~~k~~ 179 (318)
T 2rkb_A 120 ---------------LAKRDGWENVPP--FDHPLIWKGHASLVQELKAVL--R-TPPGALVLAVGGGGLLAGVVAGLLEV 179 (318)
T ss_dssp ---------------HHHSTTEEECCS--SCSHHHHHHHHHHHHHHHHHS--S-SCCSEEEEECSSSHHHHHHHHHHHHH
T ss_pred ---------------HHHhcCCEEeCC--CCChhhccchhHHHHHHHHhc--C-CCCCEEEEeeCCCcHHHHHHHHHHHh
Confidence 112223344433 369999999999999999996 3 35999999999999999999999988
Q ss_pred C-CCceEEEEeccCChhhHHHhhHh-H--H---HHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHH
Q 012838 313 G-LPWEVTAIALVDTIDGYKQQEKN-L--I---SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 385 (455)
Q Consensus 313 g-~~~~vigVe~~g~~~~~~~~~~~-l--~---~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r 385 (455)
+ +.++|+|||++++.......... . . ..+++.++ .+.++...+.+.+.+.+..+.|+|+|++++++
T Consensus 180 ~~~~~~vi~ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~-------~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~ 252 (318)
T 2rkb_A 180 GWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLG-------AKTVAARALECMQVCKIHSEVVEDTEAVSAVQ 252 (318)
T ss_dssp TCTTSCEEEEEETTBCHHHHHHHHTSCCBCSCCCSSCGGGC-------CSBCCHHHHHHHHHSCEEEEEECHHHHHHHHH
T ss_pred CCCCCEEEEEecCCChHHHHHHHcCCcccCCCCCceecccC-------CCCCCHHHHHHHHHcCCEEEEECHHHHHHHHH
Confidence 7 77999999999875432211000 0 0 00111111 11122235566666777789999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHH-----hhhc--CCCCCeEEEEecCCC-cchhhhHHHHHHHhc
Q 012838 386 RIAQLTGILVDPVYTLAAWEMATLL-----SDEK--LKQDADVVMLHTGGT-LGMFGLAQRYKSSFH 444 (455)
Q Consensus 386 ~La~~eGI~veP~ysgaalAgl~~l-----~~~~--~~~g~~VV~I~TGG~-~~~~~~~~ry~~~~~ 444 (455)
+|++++||++||+ +|++++++++. .+.+ +.++++||+|||||+ .+... .++|+.+|+
T Consensus 253 ~l~~~~gi~~eps-~a~a~aa~~~~~~~~~~~~g~~~~~~~~vv~i~tgg~~~~~~~-l~~~~~~~~ 317 (318)
T 2rkb_A 253 QLLDDERMLVEPA-CGAALAAIYSGLLRRLQAEGCLPPSLTSVVVIVCGGNNINSRE-LQALKTHLG 317 (318)
T ss_dssp HHHHHHCBCCCHH-HHHHHHHHHTSHHHHHHHTTSSCSSCSCEEEEECBCSSCCHHH-HHHHHHHTT
T ss_pred HHHHhcCcEEchh-HHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHHH-HHHHHHHhc
Confidence 9999999999996 78999987632 1222 456899999999999 67544 467887764
No 8
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, threonine DEH L-threonine metabolism; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A*
Probab=100.00 E-value=5.6e-44 Score=362.13 Aligned_cols=283 Identities=11% Similarity=0.079 Sum_probs=213.8
Q ss_pred CCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHH-hCCCCEEEecCchhHHHH--
Q 012838 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHA-- 155 (455)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~-~~G~~~VVt~G~~~sNha-- 155 (455)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||||++.+++.+|. +.+.++||++++ +||+
T Consensus 39 ~~TPL~~l--~~l~-~~~---------g~~i~~K~E~~~-p-tGSfKdR~a~~~i~~a~~~~~~~~vv~~ss--GN~g~a 102 (342)
T 2gn0_A 39 YKTGMPRS--NYFS-ERC---------KGEIFLKFENMQ-R-TGSFKIRGAFNKLSSLTEAEKRKGVVACSA--GNHAQG 102 (342)
T ss_dssp CCCCCCBC--HHHH-HHH---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHHHSCHHHHHTCEEEECS--SHHHHH
T ss_pred CCCCceEc--hhhH-HHh---------CCEEEEEEccCC-C-cCChHHHHHHHHHHHHHHhcCCCEEEEECC--ChHHHH
Confidence 89999999 8887 333 579999999997 8 79999999999999875 456678886532 5555
Q ss_pred ---HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012838 156 ---TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 231 (455)
Q Consensus 156 ---~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 231 (455)
+|+.+|++|+||||+..+. .+..+++.||| |+.+++. |++..+. |+++
T Consensus 103 lA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~-~~~~~~~----a~~l-------------------- 154 (342)
T 2gn0_A 103 VSLSCAMLGIDGKVVMPKGAPK---SKVAATCDYSAEVVLHGDN-FNDTIAK----VSEI-------------------- 154 (342)
T ss_dssp HHHHHHHHTCCEEEEECTTSCH---HHHHHHHHHSCEEEECCSS-HHHHHHH----HHHH--------------------
T ss_pred HHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHHH--------------------
Confidence 4669999999999987643 46677899999 9998874 6543221 2111
Q ss_pred hhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHHHh
Q 012838 232 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 311 (455)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~~~ 311 (455)
.+..+..|+.| +.||....||.+++.||++|+ +.||+||+|+|||||++|++.+|++
T Consensus 155 -----------------~~~~~~~~~~~--~~n~~~~~g~~t~~~Ei~~q~----~~~d~vvvpvG~GG~~~Gi~~~~k~ 211 (342)
T 2gn0_A 155 -----------------VETEGRIFIPP--YDDPKVIAGQGTIGLEIMEDL----YDVDNVIVPIGGGGLIAGIAIAIKS 211 (342)
T ss_dssp -----------------HHHHCCEECCS--SSSHHHHHHHHHHHHHHHHHC----TTCCEEEEECSSSHHHHHHHHHHHH
T ss_pred -----------------HHhcCCEEeCC--CCCHHHHHHHHHHHHHHHHHc----CCCCEEEEecCCchHHHHHHHHHHH
Confidence 11123344433 448999999999999999996 2699999999999999999999999
Q ss_pred cCCCceEEEEeccCChhhHHHhhHh-H-----HHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHH
Q 012838 312 LGLPWEVTAIALVDTIDGYKQQEKN-L-----ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 385 (455)
Q Consensus 312 ~g~~~~vigVe~~g~~~~~~~~~~~-l-----~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r 385 (455)
.++.++|+|||++++.....+.... . ...+++.++ ...+....+.+++++.++.+.|+|+|++++++
T Consensus 212 ~~p~~~vigve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl~-------~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~ 284 (342)
T 2gn0_A 212 INPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLADGCD-------VSRPGNLTYEIVRELVDDIVLVSEDEIRNSMI 284 (342)
T ss_dssp HCTTSEEEEEEETTBCHHHHHHHHTSCCCCCSSCCSCGGGC-------CSSCCHHHHHHHHHHCCEEEEECHHHHHHHHH
T ss_pred hCCCCeEEEEEeCCChhHHHHHHcCCccccCCCCccccccC-------CCCccHHHHHHHHHcCCEEEEECHHHHHHHHH
Confidence 9999999999999875433221000 0 000111111 11122335566778889999999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCCcchhhhHH
Q 012838 386 RIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLAQ 437 (455)
Q Consensus 386 ~La~~eGI~veP~ysgaalAgl~~l~~~-~~~~g~~VV~I~TGG~~~~~~~~~ 437 (455)
+|++++||++||+ +|+++++++++.+. .+ ++++||+|+|||+.+++.+.+
T Consensus 285 ~l~~~~gi~~eps-sa~alaa~~~~~~~~~~-~~~~Vv~i~tGg~~d~~~~~~ 335 (342)
T 2gn0_A 285 ALIQRNKVITEGA-GALACAALLSGKLDSHI-QNRKTVSIISGGNIDLSRVSQ 335 (342)
T ss_dssp HHHHHHCBCCCTG-GGHHHHHHHHTTTHHHH-TTSEEEEEECBCCCCHHHHHH
T ss_pred HHHHHcCeEEcHH-HHHHHHHHHHhhhhccC-CCCEEEEEECCCCCCHHHHHH
Confidence 9999999999997 89999999987542 23 689999999999999888654
No 9
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=100.00 E-value=3.3e-43 Score=360.29 Aligned_cols=296 Identities=14% Similarity=0.119 Sum_probs=216.9
Q ss_pred cCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHHH--
Q 012838 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA-- 155 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNha-- 155 (455)
-++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.++|.+|.+.|.++||++++ +||+
T Consensus 44 ~~~TPL~~l--~~l~-~~~---------g~~i~~K~E~~~-p-tGSfKdRga~~~l~~a~~~g~~~vv~aSs--GN~g~a 107 (372)
T 1p5j_A 44 HVKTPIRDS--MALS-KMA---------GTSVYLKMDSAQ-P-SGSFKIRGIGHFCKRWAKQGCAHFVCSSA--GNAGMA 107 (372)
T ss_dssp SCCCCEEEE--HHHH-HHH---------TSCEEEECGGGS-G-GGBTTHHHHHHHHHHHHHTTCCEEEECCS--SHHHHH
T ss_pred CCCCCceEc--HhhH-HHh---------CCEEEEEEcCCC-C-CCChHHHHHHHHHHHHHHcCCCEEEEeCC--CHHHHH
Confidence 379999999 8887 333 578999999997 8 89999999999999999899999998654 5665
Q ss_pred ---HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012838 156 ---TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 231 (455)
Q Consensus 156 ---~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 231 (455)
+|+++|++|+||||...+. .+..+++.||| |+.++++ |++..+. |++
T Consensus 108 lA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~-~~~a~~~----a~~--------------------- 158 (372)
T 1p5j_A 108 AAYAARQLGVPATIVVPGTTPA---LTIERLKNEGATCKVVGEL-LDEAFEL----AKA--------------------- 158 (372)
T ss_dssp HHHHHHHHTCCEEEEECTTCCH---HHHHHHHHTTCEEEECCSC-HHHHHHH----HHH---------------------
T ss_pred HHHHHHHcCCcEEEEECCCCCH---HHHHHHHhcCCEEEEECCC-HHHHHHH----HHH---------------------
Confidence 4569999999999988643 36677899999 9998874 6543222 111
Q ss_pred hhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHHHh
Q 012838 232 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 311 (455)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~~~ 311 (455)
+.+..++.++++ ++.||..++||.+++.||++|+ + ..||+||+|+|||||++|++.+|++
T Consensus 159 ----------------l~~~~~~~~~v~-~~~n~~~~~G~~t~~~Ei~~ql--~-~~~d~vvvpvG~GG~~~Gi~~~~k~ 218 (372)
T 1p5j_A 159 ----------------LAKNNPGWVYIP-PFDDPLIWEGHASIVKELKETL--W-EKPGAIALSVGGGGLLCGVVQGLQE 218 (372)
T ss_dssp ----------------HHHHSTTEEECC-SSCCHHHHHHHTHHHHHHHHHC--S-SCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred ----------------HHHhcCCcEEeC-CCCCHHHHhhHHHHHHHHHHHc--C-CCCCEEEEecCCchHHHHHHHHHHH
Confidence 111212334343 2349999999999999999996 3 3599999999999999999999999
Q ss_pred cC-CCceEEEEeccCChhhHHHhhHh-H--HHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHHHH
Q 012838 312 LG-LPWEVTAIALVDTIDGYKQQEKN-L--ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 387 (455)
Q Consensus 312 ~g-~~~~vigVe~~g~~~~~~~~~~~-l--~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~L 387 (455)
++ +.++|||||++++.......... . ..+. .++.. ++..+.++...+.+.+.+.+..+.|+|+|+++++++|
T Consensus 219 ~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~-~tia~---gl~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l 294 (372)
T 1p5j_A 219 CGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKI-TSVAK---ALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKF 294 (372)
T ss_dssp TTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCC-CCSCG---GGCCSSCCHHHHHHHHHSCEEEEEECHHHHHHHHHHH
T ss_pred hCCCCceEEEEecCCChHHHHHHHcCCceecCCC-ceeec---ccCCCCCCHHHHHHHhhcCCEEEEECHHHHHHHHHHH
Confidence 87 78999999999875433211000 0 0000 00000 0111122234566666677789999999999999999
Q ss_pred HHHhCCcccccchHHHHHHHHHH-----hhhc--CCCCCeEEEEecCCC-cchhhhHHHHHHHhc
Q 012838 388 AQLTGILVDPVYTLAAWEMATLL-----SDEK--LKQDADVVMLHTGGT-LGMFGLAQRYKSSFH 444 (455)
Q Consensus 388 a~~eGI~veP~ysgaalAgl~~l-----~~~~--~~~g~~VV~I~TGG~-~~~~~~~~ry~~~~~ 444 (455)
++++||++||+ +|+++|++++. .+.+ +.++++||+|+|||+ .+...+ .++..+++
T Consensus 295 ~~~eGi~~eps-sa~alaa~~~~~~~~l~~~g~~~~~~~~Vv~i~tgg~~~~~~~~-~~~~~~~~ 357 (372)
T 1p5j_A 295 VDDEKILVEPA-CGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQL-RALKEQLG 357 (372)
T ss_dssp HHHTCCCCCHH-HHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSSCCHHHH-HHHHHHHT
T ss_pred HHHcCCeechh-HHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHHHH-HHHHHHhC
Confidence 99999999997 78999998742 2222 356899999999997 776665 45556655
No 10
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*
Probab=100.00 E-value=8.8e-44 Score=357.82 Aligned_cols=286 Identities=15% Similarity=0.136 Sum_probs=213.1
Q ss_pred CCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHH-hCCCCEEEecCchhHHHH--
Q 012838 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHA-- 155 (455)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~-~~G~~~VVt~G~~~sNha-- 155 (455)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.++. +.+.++||++++ |||+
T Consensus 25 ~~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tGS~KdRga~~~i~~~~~~~~~~~vv~~ss--GN~g~a 88 (323)
T 1v71_A 25 NKTPVLTS--STVN-KEF---------VAEVFFKCENFQ-K-MGAFKFRGALNALSQLNEAQRKAGVLTFSS--GNHAQA 88 (323)
T ss_dssp CCCCEECC--HHHH-HHH---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHTTCCHHHHHHCEEECCS--SHHHHH
T ss_pred CCCCceEh--HhhH-HHh---------CCeEEEEecCCC-C-cCCHHHHHHHHHHHHHHHhcCCCeEEEeCC--CcHHHH
Confidence 79999999 8877 333 679999999997 7 79999999999988754 345678887643 6666
Q ss_pred ---HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012838 156 ---TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 231 (455)
Q Consensus 156 ---~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 231 (455)
+|+.+|++|+||||+..+. .+..+++.||| |+.+++. ++++.+. |+++
T Consensus 89 lA~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~-~~~~~~~----a~~l-------------------- 140 (323)
T 1v71_A 89 IALSAKILGIPAKIIMPLDAPE---AKVAATKGYGGQVIMYDRY-KDDREKM----AKEI-------------------- 140 (323)
T ss_dssp HHHHHHHTTCCEEEEEETTCCH---HHHHHHHHTTCEEEEECTT-TTCHHHH----HHHH--------------------
T ss_pred HHHHHHHcCCCEEEECCCCCcH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHHH--------------------
Confidence 4669999999999987653 35567899999 9999875 4443322 1111
Q ss_pred hhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHHHh
Q 012838 232 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 311 (455)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~~~ 311 (455)
.+..+.+| ++ ++.||....||.+++.||++|+ +.||+||+|+|||||++|++.+|++
T Consensus 141 -----------------~~~~~~~~-i~-~~~n~~~~~g~~t~~~Ei~~q~----~~~d~vv~~vG~GGt~~Gi~~~~k~ 197 (323)
T 1v71_A 141 -----------------SEREGLTI-IP-PYDHPHVLAGQGTAAKELFEEV----GPLDALFVCLGGGGLLSGSALAARH 197 (323)
T ss_dssp -----------------HHHHTCBC-CC-SSSSHHHHHHHTHHHHHHHHHH----CCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred -----------------HHhcCCEe-cC-CCCCcchhhhHhHHHHHHHHhc----CCCCEEEEecCCcHHHHHHHHHHHH
Confidence 11122334 44 3578999999999999999997 2689999999999999999999999
Q ss_pred cCCCceEEEEeccCChhhHHHhhHhHHHHH--HHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHHHHHH
Q 012838 312 LGLPWEVTAIALVDTIDGYKQQEKNLISEF--KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 389 (455)
Q Consensus 312 ~g~~~~vigVe~~g~~~~~~~~~~~l~~~~--~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~La~ 389 (455)
+++.++|+|||++++.....+......... ..++.. ++....+....+.+++++.++.+.|+|+|+++++++|++
T Consensus 198 ~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~t~a~---gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 274 (323)
T 1v71_A 198 FAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIAD---GAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAA 274 (323)
T ss_dssp HCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCT---TSCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCcccc---cccCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 999999999999987543322110000000 000110 111111222345567788999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhhHH
Q 012838 390 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQ 437 (455)
Q Consensus 390 ~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~~~~~~~~~ 437 (455)
++||++||+ +|+++++++++.++ + ++++||+|||||+.+++.+.+
T Consensus 275 ~~gi~~eps-~a~alaa~~~~~~~-~-~~~~vv~i~tGg~~~~~~~~~ 319 (323)
T 1v71_A 275 RMKIVVEPT-GCLSFAAARAMKEK-L-KNKRIGIIISGGNVDIERYAH 319 (323)
T ss_dssp HTCCCCCGG-GGHHHHHHHHTGGG-G-TTCEEEEEECBCCCCHHHHHH
T ss_pred hcCeEEcHH-HHHHHHHHHHhHHh-c-CCCeEEEEeCCCCCCHHHHHH
Confidence 999999998 47999999988654 4 689999999999999988654
No 11
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1
Probab=100.00 E-value=2.8e-43 Score=352.15 Aligned_cols=282 Identities=16% Similarity=0.068 Sum_probs=209.7
Q ss_pred CCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHHH---
Q 012838 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA--- 155 (455)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNha--- 155 (455)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||||.+.+++.+++ +.++||++++ |||+
T Consensus 19 ~~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tgSfKdR~a~~~i~~l~--~~~~vv~~ss--GN~g~al 80 (311)
T 1ve5_A 19 HRTPLLTS--RLLD-GLL---------GKRLLLKAEHLQ-K-TGSFKARGALSKALALE--NPKGLLAVSS--GNHAQGV 80 (311)
T ss_dssp CCCCEEEC--HHHH-HHT---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHHHSS--SCCCEEEECS--SHHHHHH
T ss_pred CCCCceec--hhhH-Hhh---------CCeEEEEecCCC-C-cCCcHHHHHHHHHHHhc--CCCeEEEECC--CcHHHHH
Confidence 79999999 7776 332 679999999996 8 89999999999999877 6778887543 5666
Q ss_pred --HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhh
Q 012838 156 --TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 232 (455)
Q Consensus 156 --~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~ 232 (455)
+|+++|++|+||||+..+.. +..+++.||| |+.+++. |+++.+.. +++
T Consensus 81 A~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~V~~~~~~-~~~~~~~a----~~~--------------------- 131 (311)
T 1ve5_A 81 AYAAQVLGVKALVVMPEDASPY---KKACARAYGAEVVDRGVT-AKNREEVA----RAL--------------------- 131 (311)
T ss_dssp HHHHHHHTCCEEEECCCC--CC---HHHHHHHTTCEEECTTCC-TTTHHHHH----HHH---------------------
T ss_pred HHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEECCC-HHHHHHHH----HHH---------------------
Confidence 45699999999999886543 5677899999 9988875 66533321 111
Q ss_pred hhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeCCCcchHHHHHHHHHh
Q 012838 233 KSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAIC 311 (455)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~-~g~~~pD~vvvpvGtGgt~~Gl~~g~~~ 311 (455)
.+..+..|+.| +.||...+||.+++.||++|+. .+ ..||+||+|+|||||++|++.+|++
T Consensus 132 ----------------~~~~~~~~~~~--~~n~~~~~g~~t~~~Ei~~q~~~~~-~~~d~vvvpvG~Gg~~~Gi~~~~k~ 192 (311)
T 1ve5_A 132 ----------------QEETGYALIHP--FDDPLVIAGQGTAGLELLAQAGRMG-VFPGAVLAPVGGGGLLAGLATAVKA 192 (311)
T ss_dssp ----------------HHHHCCEECCS--SSSHHHHHHHHHHHHHHHHHHHHHT-CCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred ----------------HHhcCcEecCC--CCCcchhhhccHHHHHHHHHHHhcC-CCCCEEEEccCchHHHHHHHHHHHH
Confidence 11123344444 3489999999999999999973 22 2699999999999999999999999
Q ss_pred cCCCceEEEEeccCChhhHHHhhHhHHHH---HHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHHHHH
Q 012838 312 LGLPWEVTAIALVDTIDGYKQQEKNLISE---FKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 388 (455)
Q Consensus 312 ~g~~~~vigVe~~g~~~~~~~~~~~l~~~---~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~La 388 (455)
+++.++|+|||++++.....+........ ...++..+ +..+.+....+.+++++.++.+.|+|+|+++++++|+
T Consensus 193 ~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~i~~g---l~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~ 269 (311)
T 1ve5_A 193 LSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADG---VRTLSLGERTFPILRERVDGILTVSEEALLEAERLLF 269 (311)
T ss_dssp HCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGG---GCCSSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHH
T ss_pred hCCCCEEEEEEeCCChHHHHHHHcCCccccCCCCCeeeCc---CCCCCccHHHHHHHHhcCCEEEEECHHHHHHHHHHHH
Confidence 99999999999998654332210000000 00011110 1111122335566777889999999999999999999
Q ss_pred HHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchh
Q 012838 389 QLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMF 433 (455)
Q Consensus 389 ~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~~~~~ 433 (455)
+++||++||+ ||+++++++++.++ . +++||+|||||+.|+.
T Consensus 270 ~~~gi~~eps-sa~alaa~~~~~~~--~-~~~vv~i~tgg~~d~~ 310 (311)
T 1ve5_A 270 TRTKQVVEPT-GALPLAAVLEHGAR--L-PQTLALLLSGGNRDFS 310 (311)
T ss_dssp HHTCBCCCGG-GGHHHHHHHHHGGG--S-CSEEEEEECBCCCCCC
T ss_pred HhcCceEchH-HHHHHHHHHhhhhc--c-CCEEEEEECCCCCCCC
Confidence 9999999997 89999999988765 4 8999999999999863
No 12
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.3e-42 Score=354.44 Aligned_cols=286 Identities=14% Similarity=0.080 Sum_probs=213.3
Q ss_pred ccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHHH-
Q 012838 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA- 155 (455)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNha- 155 (455)
..|+|||+++ ++|+ +.+ |.+||+|+|++| | +||||||++.+++.+|++.|.++||+++ +|||+
T Consensus 35 ~~g~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tgSfKdR~a~~~l~~a~~~g~~~vv~aS--sGN~g~ 98 (360)
T 2d1f_A 35 LEGGTPLIAA--TNLS-KQT---------GCTIHLKVEGLN-P-TGSFKDRGMTMAVTDALAHGQRAVLCAS--TGNTSA 98 (360)
T ss_dssp CCCCCCEEEC--HHHH-HHH---------SSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCSEEEECC--SSHHHH
T ss_pred ccCCCCCeec--hhhH-HHh---------CCeEEEEECCCC-C-CcCHHHHHHHHHHHHHHHCCCCEEEEeC--CcHHHH
Confidence 3489999999 8887 433 578999999997 8 8999999999999999999999999752 24555
Q ss_pred ----HHHHhCCeEEEEecCC-CccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012838 156 ----TAVERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 229 (455)
Q Consensus 156 ----~Aa~~Gl~~~iv~~~~-~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 229 (455)
+|+++|++|+||||+. .+. .+..+++.||| |+.|+++ |++..+. +++
T Consensus 99 alA~~a~~~G~~~~i~~p~~~~~~---~k~~~~~~~GA~v~~v~~~-~~~~~~~----a~~------------------- 151 (360)
T 2d1f_A 99 SAAAYAARAGITCAVLIPQGKIAM---GKLAQAVMHGAKIIQIDGN-FDDCLEL----ARK------------------- 151 (360)
T ss_dssp HHHHHHHHHTCEEEEEECSSCCCH---HHHHHHHHTTCEEEEBSSC-HHHHHHH----HHH-------------------
T ss_pred HHHHHHHHcCCcEEEEEcCCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHH-------------------
Confidence 4669999999999986 443 35677899999 9999874 6543222 111
Q ss_pred HhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHH
Q 012838 230 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 309 (455)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~ 309 (455)
+.+..++.|+++ + .||...+||.+++.||++|+ + ..||+||+|+|||||++|++.+|
T Consensus 152 ------------------l~~~~~~~~~i~-~-~n~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi~~~~ 208 (360)
T 2d1f_A 152 ------------------MAADFPTISLVN-S-VNPVRIEGQKTAAFEIVDVL--G-TAPDVHALPVGNAGNITAYWKGY 208 (360)
T ss_dssp ------------------HHHHCTTEEECS-T-TCHHHHHHHTHHHHHHHHHH--S-SCCSEEEEECSSSHHHHHHHHHH
T ss_pred ------------------HHHhcCCeEEcC-C-CChhhhhhHHHHHHHHHHHc--C-CCCCEEEEeCCchHHHHHHHHHH
Confidence 122234456665 3 89999999999999999997 3 36899999999999999999999
Q ss_pred HhcC------CCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHH
Q 012838 310 ICLG------LPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 383 (455)
Q Consensus 310 ~~~g------~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a 383 (455)
++.. +.++|+|||++++..............+++.++... +. ..+..+.+++++.++.+.|+|+|++++
T Consensus 209 k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~-~~----~~~~~~~~~~~~~~~~~~V~d~e~~~a 283 (360)
T 2d1f_A 209 TEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSHPETIATAIRIGS-PA----SWTSAVEAQQQSKGRFLAASDEEILAA 283 (360)
T ss_dssp HHHHHTTSCSSCCEEEEEEEGGGCHHHHSSCCSSCCCSCGGGCCSS-CT----THHHHHHHHHHHTCEEEEECHHHHHHH
T ss_pred HHHHhccccccCceEEEEecCCCCHHhcCCccCCccchHHHhCCCC-CC----cHHHHHHHHHHhCCeEEEECHHHHHHH
Confidence 8753 268999999998654221110000001111111110 00 001123456778889999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCC-cchhh
Q 012838 384 CHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGT-LGMFG 434 (455)
Q Consensus 384 ~r~La~~eGI~veP~ysgaalAgl~~l~~~-~~~~g~~VV~I~TGG~-~~~~~ 434 (455)
+++|++++||++||+ ||++++++++++++ .+.++++||+|+|||+ .++..
T Consensus 284 ~~~l~~~eGi~~eps-sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~ 335 (360)
T 2d1f_A 284 YHLVARVEGVFVEPA-SAASIAGLLKAIDDGWVARGSTVVCTVTGNGLKDPDT 335 (360)
T ss_dssp HHHHHHHHCCCBCHH-HHHHHHHHHHHHHHTSSCTTCEEEEEECBBGGGCHHH
T ss_pred HHHHHHhcCeeECch-HHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCcCCHHH
Confidence 999999999999997 89999999998765 3557899999999987 56554
No 13
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=100.00 E-value=6.5e-42 Score=344.72 Aligned_cols=276 Identities=13% Similarity=0.081 Sum_probs=206.8
Q ss_pred CCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC----CEEEecCchhHHH
Q 012838 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (455)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~----~~VVt~G~~~sNh 154 (455)
++|||+++ ++|+ +.+-.. ....|.+||+|+|++| | +||||+|++.+++.+|++.|. ++||++++ +||
T Consensus 14 g~TPL~~~--~~l~-~~~~~~--~~~~g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~l~~~~~vv~aSs--GN~ 84 (325)
T 3dwg_A 14 GNTPLVGL--QRLS-PRWDDG--RDGPHVRLWAKLEDRN-P-TGSIKDRPAVRMIEQAEADGLLRPGATILEPTS--GNT 84 (325)
T ss_dssp SCCCEEEC--TTTS-SBSSCB--TTBCCEEEEEEETTSS-T-TSBTTHHHHHHHHHHHHHTTCCCTTCEEEEECS--SHH
T ss_pred CCCCcEEc--cccc-hhhccc--ccCCCcEEEEEECCCC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCC--cHH
Confidence 79999999 8888 431000 0001679999999997 7 799999999999999999998 88997543 566
Q ss_pred H-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012838 155 A-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 227 (455)
Q Consensus 155 a-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 227 (455)
+ +|+.+|++|+||||...+. .+..+++.||| |+.++.. .++++.+. |++
T Consensus 85 g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~----------------- 140 (325)
T 3dwg_A 85 GISLAMAARLKGYRLICVMPENTSV---ERRQLLELYGAQIIFSAAEGGSNTAVAT----AKE----------------- 140 (325)
T ss_dssp HHHHHHHHHHHTCEEEEEEESSSCH---HHHHHHHHHTCEEEEECSTTTHHHHHHH----HHH-----------------
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCHHHHHHH----HHH-----------------
Confidence 6 4669999999999988653 35567899999 9999864 24432221 111
Q ss_pred HHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHH-HHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHH
Q 012838 228 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 306 (455)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~-~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~ 306 (455)
+.+..++.|+ +.++.||... .||.+++.||++|+ + .||+||+|+|||||++|++
T Consensus 141 --------------------l~~~~~~~~~-~~~~~np~~~~~g~~t~~~Ei~~q~--~--~~d~vv~pvG~GG~~aGi~ 195 (325)
T 3dwg_A 141 --------------------LAATNPSWVM-LYQYGNPANTDSHYCGTGPELLADL--P--EITHFVAGLGTTGTLMGTG 195 (325)
T ss_dssp --------------------HHHHCTTSBC-CCTTTCHHHHHHHHHTHHHHHHHHC--T--TCCEEEEECSSSHHHHHHH
T ss_pred --------------------HHHhCCCeEe-CCCCCCHHHHHHHHHHHHHHHHHhc--C--CCCEEEEecCchHHHHHHH
Confidence 1122232333 4456799887 69999999999996 3 4999999999999999999
Q ss_pred HHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHHH
Q 012838 307 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 386 (455)
Q Consensus 307 ~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~ 386 (455)
.+|++.++.++|+|||++++.... .+ +.++.+..| +.+.+.+.++.+.|+|+|+++++++
T Consensus 196 ~~~k~~~p~~~vigVe~~~~~~~~--~~--------~~i~~~~~~----------~~~~~~~~d~~~~V~d~e~~~a~~~ 255 (325)
T 3dwg_A 196 RFLREHVANVKIVAAEPRYGEGVY--AL--------RNMDEGFVP----------ELYDPEILTARYSVGAVDAVRRTRE 255 (325)
T ss_dssp HHHHHHSTTCEEEEEEEECCGGGG--CC--------SSGGGCCCC----------TTCCGGGCSEEEEEEHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEeeCCCcchh--cc--------CcccCCcCc----------ccccHhhCCeEEEECHHHHHHHHHH
Confidence 999999999999999999975421 11 112221111 2245567788999999999999999
Q ss_pred HHHHhCCcccccchHHHHHHHHHHhhhcCCCCCe--EEEEecC-CCcchh
Q 012838 387 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDAD--VVMLHTG-GTLGMF 433 (455)
Q Consensus 387 La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~--VV~I~TG-G~~~~~ 433 (455)
|++++||++||+ +|++++++++++++...++++ ||+|||| |...+.
T Consensus 256 l~~~egi~~eps-sa~a~aa~~~~~~~~~~~g~~~~Vv~i~~g~g~ky~~ 304 (325)
T 3dwg_A 256 LVHTEGIFAGIS-TGAVLHAALGVGAGALAAGERADIALVVADAGWKYLS 304 (325)
T ss_dssp HHHHHCCCBCHH-HHHHHHHHHHHHHHHHHHTCCEEEEEEECBBGGGGGG
T ss_pred HHHHcCceechh-HHHHHHHHHHHHHHhccCCCCCeEEEEECCCCccccC
Confidence 999999999997 899999999887653234677 9999999 444443
No 14
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=100.00 E-value=2.6e-41 Score=337.01 Aligned_cols=266 Identities=15% Similarity=0.068 Sum_probs=203.6
Q ss_pred cCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC----CEEEecCchhHH
Q 012838 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSA 153 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~----~~VVt~G~~~sN 153 (455)
.++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.+|++.|. ++||++++ +|
T Consensus 8 ~~~TPL~~~--~~l~-~~~---------g~~v~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~~~~g~~vv~~ss--GN 71 (303)
T 2v03_A 8 IGNTPLVKL--QRMG-PDN---------GSEVWLKLEGNN-P-AGSVKDRAALSMIVEAEKRGEIKPGDVLIEATS--GN 71 (303)
T ss_dssp SSCCCEEEC--SSSS-CSS---------SCEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECS--SH
T ss_pred cCCCCcEEC--cccc-ccc---------CCEEEEEeccCC-C-CCCcHHHHHHHHHHHHHHcCCCCCCCEEEEECC--cH
Confidence 389999999 8888 433 579999999997 8 799999999999999998887 78997543 56
Q ss_pred HH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012838 154 HA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 226 (455)
Q Consensus 154 ha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 226 (455)
|+ +|+++|++|+||||...+. .+..+++.||| |+.++.. .|++..+. |++
T Consensus 72 ~g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~----a~~---------------- 128 (303)
T 2v03_A 72 TGIALAMIAALKGYRMKLLMPDNMSQ---ERRAAMRAYGAELILVTKEQGMEGARDL----ALE---------------- 128 (303)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECTTTHHHHHHHH----HHH----------------
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHH----------------
Confidence 65 4569999999999987653 35567899999 9999863 34432211 111
Q ss_pred HHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHH-HHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHH
Q 012838 227 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 305 (455)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~-G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl 305 (455)
+.+..++.|+ .++.||.... ||.+++.||++|+ + ..||+||+|+|||||++|+
T Consensus 129 ---------------------~~~~~~~~~~--~~~~n~~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi 182 (303)
T 2v03_A 129 ---------------------MANRGEGKLL--DQFNNPDNPYAHYTTTGPEIWQQT--G-GRITHFVSSMGTTGTITGV 182 (303)
T ss_dssp ---------------------HHHTTSCEEC--CTTTCTHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHHH
T ss_pred ---------------------HHHhCCCccc--CCcCChhhHHHhcCCcHHHHHHHh--C-CCCCEEEEEeCccHhHHHH
Confidence 1122122233 3457888765 7999999999996 3 2599999999999999999
Q ss_pred HHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHH
Q 012838 306 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 385 (455)
Q Consensus 306 ~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r 385 (455)
+.+|++.++.++|+|||++++..... + +.++.+.++ ..+.....++.+.|+|+|++++++
T Consensus 183 ~~~~k~~~p~~~vigve~~~~~~~~~--~--------~gl~~~~~~----------~~~~~~~~d~~~~V~d~e~~~a~~ 242 (303)
T 2v03_A 183 SRFMREQSKPVTIVGLQPEEGSSIPG--I--------RRWPTEYLP----------GIFNASLVDEVLDIHQRDAENTMR 242 (303)
T ss_dssp HHHHHTSSSCCEEEEEEECTTCCCTT--C--------CCCCGGGCC----------TTCCGGGCSEEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEcCCCCccccc--C--------CcCCCCCCC----------cccchHHCCEEEEECHHHHHHHHH
Confidence 99999999999999999998754221 1 111211111 123344567899999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcc
Q 012838 386 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLG 431 (455)
Q Consensus 386 ~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~~~ 431 (455)
+|++++||++||+ ||+++++++++.++. ++++||+|+|||+.-
T Consensus 243 ~l~~~~gi~~~ps-sa~alaa~~~~~~~~--~~~~vv~i~tg~~~k 285 (303)
T 2v03_A 243 ELAVREGIFCGVS-SGGAVAGALRVAAAN--PDAVVVAIICDRGDR 285 (303)
T ss_dssp HHHHHHCCCBCHH-HHHHHHHHHHHHHHS--TTCEEEEEECBBSGG
T ss_pred HHHHHcCceEcHH-HHHHHHHHHHHHHHC--CCCeEEEEECCCCcc
Confidence 9999999999997 899999999987653 688999999998753
No 15
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=100.00 E-value=3.7e-42 Score=349.82 Aligned_cols=287 Identities=15% Similarity=0.075 Sum_probs=210.3
Q ss_pred ccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHHH-
Q 012838 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA- 155 (455)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNha- 155 (455)
..|+|||+++..++|+ +.+ |.+||+|+|++| | +||||||++.+++.+|++.|.++||+++ +|||+
T Consensus 25 ~~g~TPL~~~~~~~l~-~~~---------g~~v~~K~E~~~-p-tgS~KdR~a~~~l~~a~~~g~~~vv~~S--sGN~g~ 90 (351)
T 3aey_A 25 LEGSTPLIPLKGPEEA-RKK---------GIRLYAKYEGLN-P-TGSFKDRGMTLAVSKAVEGGAQAVACAS--TGNTAA 90 (351)
T ss_dssp CCCCCCEEECCCCHHH-HTT---------TCEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCSEEEESC--SSHHHH
T ss_pred CCCCCCeeecCchhhH-HHh---------CCeEEEEecCCC-C-cccHHHHHHHHHHHHHHhcCCCEEEEeC--CCHHHH
Confidence 3489999987334455 222 679999999997 8 8999999999999999999999999752 24555
Q ss_pred ----HHHHhCCeEEEEecCC-CccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012838 156 ----TAVERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 229 (455)
Q Consensus 156 ----~Aa~~Gl~~~iv~~~~-~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 229 (455)
+|+.+|++|+||||+. .+. .+..+++.||| |+.|+++ |++..+. |++
T Consensus 91 alA~~a~~~G~~~~iv~p~~~~~~---~k~~~~~~~GA~V~~v~~~-~~~~~~~----a~~------------------- 143 (351)
T 3aey_A 91 SAAAYAARAGILAIVVLPAGYVAL---GKVAQSLVHGARIVQVEGN-FDDALRL----TQK------------------- 143 (351)
T ss_dssp HHHHHHHHHTSEEEEEEETTCSCH---HHHHHHHHTTCEEEEEESC-HHHHHHH----HHH-------------------
T ss_pred HHHHHHHHcCCCEEEEECCCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHH-------------------
Confidence 4669999999999986 543 36677899999 9999874 6543222 111
Q ss_pred HhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHH
Q 012838 230 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 309 (455)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~ 309 (455)
+.+..+ .|+++ + .||...+||.+++.||++|+ + ..||+||+|+|||||++|++.+|
T Consensus 144 ------------------l~~~~~-~~~~~-~-~n~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi~~~~ 199 (351)
T 3aey_A 144 ------------------LTEAFP-VALVN-S-VNPHRLEGQKTLAFEVVDEL--G-DAPHYHALPVGNAGNITAHWMGY 199 (351)
T ss_dssp ------------------HHHHSS-EEECS-T-TCHHHHHHHHHHHHHHHHHH--S-SCCSEEEEECSSSHHHHHHHHHH
T ss_pred ------------------HHHhcC-cEecC-C-CCccceeeeeeHHHHHHHHc--C-CCCCEEEEecCchHHHHHHHHHH
Confidence 112223 45554 3 89999999999999999997 3 35899999999999999999999
Q ss_pred HhcC------CCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHH
Q 012838 310 ICLG------LPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 383 (455)
Q Consensus 310 ~~~g------~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a 383 (455)
++.. +.++|+|||++++..............+++.++. + .+...+..+.+++++.++.+.|+|+|++++
T Consensus 200 k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~---~--~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a 274 (351)
T 3aey_A 200 KAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRI---G--NPASWQGAVRAKEESGGVIEAVTDEEILFA 274 (351)
T ss_dssp HHHHHHTSCSSCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCC---S--SCTTHHHHHHHHHHHTCEEEEECHHHHHHH
T ss_pred HHHHhccccCCCCeEEEEecCCCChhhcCcccCCccchhHhhcC---C--CCCCHHHHHHHHHHhCCeEEEECHHHHHHH
Confidence 8763 2689999999986542211100000011111111 0 000001123456778889999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCC-cchhh
Q 012838 384 CHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGT-LGMFG 434 (455)
Q Consensus 384 ~r~La~~eGI~veP~ysgaalAgl~~l~~~~-~~~g~~VV~I~TGG~-~~~~~ 434 (455)
++++++++||++||+ ||+++++++++.++. +.++++||+|||||+ .++..
T Consensus 275 ~~~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~ 326 (351)
T 3aey_A 275 YRYLAREEGIFCEPA-SAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPAT 326 (351)
T ss_dssp HHHHHHHTCCCBCHH-HHHHHHHHHHHHHTTCSCTTCEEEEEECBBGGGCHHH
T ss_pred HHHHHHhCCEEECch-HHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCCHHH
Confidence 999999999999997 899999999987653 557899999999987 45443
No 16
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=100.00 E-value=8.9e-42 Score=352.68 Aligned_cols=292 Identities=12% Similarity=0.049 Sum_probs=213.7
Q ss_pred CCCCCcccccCCCCCCcCCCcccccCCC-ceEEEEeCCCCCCCcccchhhhHHhhHHHHH--h----------------C
Q 012838 79 GGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLE--D----------------H 139 (455)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g-~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~--~----------------~ 139 (455)
++|||+++ ++|+ +.+ | .+||+|+|++|+| +||||+|++.+++.++. + .
T Consensus 43 ~~TPL~~~--~~l~-~~~---------g~~~i~~K~E~~~~p-tgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~ 109 (398)
T 4d9i_A 43 RPTPLCAL--DDLA-NLF---------GVKKILVKDESKRFG-LNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAI 109 (398)
T ss_dssp CCCCEEEC--HHHH-HHH---------TSSEEEEEEGGGSTT-TTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCC
T ss_pred CCCCceeh--HHHH-HHh---------CCCcEEEEECCCCCC-CCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhc
Confidence 79999999 8887 443 4 5999999999768 89999999999998873 2 3
Q ss_pred CCC-EEEecCchhHHHH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhh
Q 012838 140 IVT-DLVTCGGCQSAHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVA 212 (455)
Q Consensus 140 G~~-~VVt~G~~~sNha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la 212 (455)
+.+ +||+++ ++||+ +|+.+|++|+||||...+. .+..+++.||| |+.|+++ |+++.+. |+++
T Consensus 110 ~~~~~vv~aS--sGNhg~a~A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~Vv~v~~~-~~~a~~~----a~~~- 178 (398)
T 4d9i_A 110 GEKMTFATTT--DGNHGRGVAWAAQQLGQNAVIYMPKGSAQ---ERVDAILNLGAECIVTDMN-YDDTVRL----TMQH- 178 (398)
T ss_dssp SCCCEEEEEC--SSHHHHHHHHHHHHHTCEEEEEECTTCCH---HHHHHHHTTTCEEEECSSC-HHHHHHH----HHHH-
T ss_pred cCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEEeCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHHH-
Confidence 466 888742 25665 4669999999999987653 35567899999 9999874 6643322 1111
Q ss_pred cCCCCccchhhhhHHHHHhhhhhccccccccccccccccCCeEEEecC----CCC--cHHHHHHHHHHHHHHHHHHH-cC
Q 012838 213 GNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GAG--DAVALLGVFRLLQYLSQDHL-LG 285 (455)
Q Consensus 213 ~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~----g~~--np~~~~G~~t~~~Ei~eq~~-~g 285 (455)
.+.. +.|+++. ++. +|....||.+++.||++|+. .+
T Consensus 179 ------------------------------------~~~~-g~~~v~~~~~~g~~~~~~~~~~G~~t~~~Ei~~q~~~~g 221 (398)
T 4d9i_A 179 ------------------------------------AQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMG 221 (398)
T ss_dssp ------------------------------------HHHH-TCEECCSSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------HHHc-CCEEecCcccCCcCCCCchhhhhHHHHHHHHHHHhhhcC
Confidence 1112 2355553 343 37889999999999999984 22
Q ss_pred CCCCCEEEEeCCCcchHHHHHHHHHhc--CCCceEEEEeccCChhhHHHhhHh-H--HHHHHHHhcccccCCCcCccccc
Q 012838 286 RKRAIKFVVDAGTGTTAVGLGLGAICL--GLPWEVTAIALVDTIDGYKQQEKN-L--ISEFKRLFGFLLKKSSLNEVDGE 360 (455)
Q Consensus 286 ~~~pD~vvvpvGtGgt~~Gl~~g~~~~--g~~~~vigVe~~g~~~~~~~~~~~-l--~~~~~~~ig~~~~~~~~~~~~~~ 360 (455)
..||+||+|+|+|||++|++.+++++ .+.++|+|||++++.....+.... . .....++++.+ +..+.+...
T Consensus 222 -~~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~tia~g---l~~~~p~~~ 297 (398)
T 4d9i_A 222 -VTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAG---LACGEPNPL 297 (398)
T ss_dssp -CCCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHHHHHHHHTSCCCC------CCTT---CCCSSCCHH
T ss_pred -CCCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCCceecc---ccCCCCCHH
Confidence 24999999999999999999999765 468999999999976543221110 0 00011223321 112223334
Q ss_pred cchheeeccCcEEEeCCHHHHHHHHHHHHHhC----CcccccchHHHHHHHHHHh---------hh-cCCCCCeEEEEec
Q 012838 361 IVHWVERCRPRKFGNVFEGEIEACHRIAQLTG----ILVDPVYTLAAWEMATLLS---------DE-KLKQDADVVMLHT 426 (455)
Q Consensus 361 ~~~l~~~~~~~~~~v~d~ei~~a~r~La~~eG----I~veP~ysgaalAgl~~l~---------~~-~~~~g~~VV~I~T 426 (455)
.|.+++++.++.+.|+|+|+++++++|+++|| |++||+ +|++++++++++ ++ .+.++++||+|||
T Consensus 298 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~eps-sa~alaa~~~~~~~~~~~~l~~~~~~~~~~~Vv~i~t 376 (398)
T 4d9i_A 298 GWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGES-GAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVIST 376 (398)
T ss_dssp HHHHHHHHCCEEEEECTHHHHHHHHHHHSCSTTCCCCCCCHH-HHHHHHHHHHHHHSTTHHHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHHcCCeEEEECHHHHHHHHHHHHHhhCCCCcEEECch-HHHHHHHHHHhhhhhhhHHHHHhcCCCCCCEEEEEeC
Confidence 56667888999999999999999999999999 999997 899999999874 22 3567899999999
Q ss_pred CCCcchhhhH
Q 012838 427 GGTLGMFGLA 436 (455)
Q Consensus 427 GG~~~~~~~~ 436 (455)
||+.++..+.
T Consensus 377 GG~~d~~~~~ 386 (398)
T 4d9i_A 377 EGDTDVKHYR 386 (398)
T ss_dssp BCCSSHHHHH
T ss_pred CCCCCHHHHH
Confidence 9999988754
No 17
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=100.00 E-value=2.8e-42 Score=350.83 Aligned_cols=286 Identities=15% Similarity=0.052 Sum_probs=212.2
Q ss_pred ccCCCCCcccccCCCCCCcCCCcccccCCCce--EEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHH
Q 012838 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRC--FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAH 154 (455)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~--lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNh 154 (455)
..|+|||+++ ++|+ +.+ |.+ ||+|+|++| | +||||||++.+++.+|++.|.++||+++ +|||
T Consensus 27 ~~g~TPL~~~--~~l~-~~~---------g~~~~i~~K~E~~~-p-tGS~KdR~a~~~l~~a~~~g~~~vv~~S--sGN~ 90 (352)
T 2zsj_A 27 YEGNTPLIEA--DNLA-RAI---------GFKGKIYLKYEGLN-P-TGSFKDRGMTLAISKAVEAGKRAVICAS--TGNT 90 (352)
T ss_dssp CCCCCCEEEC--HHHH-HHH---------TCCSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCEEEECC--SSHH
T ss_pred ccCCCCCeeh--HHHH-HHh---------CCCceEEEEECCCC-C-CccHHHHHHHHHHHHHHhcCCCEEEEeC--CchH
Confidence 4589999999 8877 433 566 999999997 8 8999999999999999999999999752 2455
Q ss_pred H-----HHHHhCCeEEEEecCC-CccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012838 155 A-----TAVERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 227 (455)
Q Consensus 155 a-----~Aa~~Gl~~~iv~~~~-~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 227 (455)
+ +|+++|++|+||||+. .+. .+..+++.||| |+.|+++ |++..+. +++
T Consensus 91 g~alA~~a~~~G~~~~i~~p~~~~~~---~k~~~~~~~GA~v~~v~~~-~~~~~~~----a~~----------------- 145 (352)
T 2zsj_A 91 SASAAAYAARAGLRAYVLLPKGAVAI---GKLSQAMIYGAKVLAIQGT-FDDALNI----VRK----------------- 145 (352)
T ss_dssp HHHHHHHHHHHTCEEEEEEEGGGCCH---HHHHHHHHTTCEEEEESSC-HHHHHHH----HHH-----------------
T ss_pred HHHHHHHHHhcCCcEEEEECCCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHH-----------------
Confidence 5 4669999999999986 443 35677899999 9999874 6543222 111
Q ss_pred HHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHH
Q 012838 228 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 307 (455)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~ 307 (455)
+.+..+ .|+++ + .||...+||.+++.||++|+ + ..||+||+|+|||||++|++.
T Consensus 146 --------------------l~~~~~-~~~~~-~-~n~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi~~ 199 (352)
T 2zsj_A 146 --------------------IGENFP-VEIVN-S-VNPYRIEGQKTAAFEICDTL--G-EAPDYHFIPVGNAGNITAYWK 199 (352)
T ss_dssp --------------------HHHHSS-EEECS-T-TCTHHHHHHTHHHHHHHHHH--S-SCCSEEEEECSSSHHHHHHHH
T ss_pred --------------------HHHHcC-cEECC-C-CCcchhhhHhHHHHHHHHHc--C-CCCCEEEEeCCCcHHHHHHHH
Confidence 112223 45554 3 78999999999999999997 3 358999999999999999999
Q ss_pred HHHhcC------CCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHH
Q 012838 308 GAICLG------LPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEI 381 (455)
Q Consensus 308 g~~~~g------~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~ 381 (455)
+|++.. +.++|+|||++++..............+++.++... +. ..+..+.+++++.++.+.|+|+|++
T Consensus 200 ~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~-~~----~~~~~~~~~~~~~~~~~~V~d~e~~ 274 (352)
T 2zsj_A 200 GFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGN-PY----SWKSALKAAQESGGKIDAVSDSEIL 274 (352)
T ss_dssp HHHHHHHTTSCSSCCEEEEEEETTBCHHHHTSCCSSCCCSCGGGCCSS-CT----THHHHHHHHHHHTCEEEEECHHHHH
T ss_pred HHHHHHhcCCCCCCCEEEEEecCCCcHHhcCCccCCCcchhHHhcCCC-CC----cHHHHHHHHHHhCCeEEEECHHHHH
Confidence 998763 268999999999754321110000001111111110 00 0011233467788899999999999
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCC-cchhhh
Q 012838 382 EACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGT-LGMFGL 435 (455)
Q Consensus 382 ~a~r~La~~eGI~veP~ysgaalAgl~~l~~~~-~~~g~~VV~I~TGG~-~~~~~~ 435 (455)
+++++|++++||++||+ ||++++++++++++. +.++++||+|||||+ .++...
T Consensus 275 ~a~~~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~ 329 (352)
T 2zsj_A 275 YAYKLIASTEGVFCEPA-SAASVAGLIKLVREGFFKGGEVVTCTLTGNGLKDPDTA 329 (352)
T ss_dssp HHHHHHHHHHCCCBCHH-HHHHHHHHHHHHHTTCCCSCCEEEEEECBBGGGCHHHH
T ss_pred HHHHHHHHhCCeeECch-HHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccChHHH
Confidence 99999999999999997 899999999987653 557899999999987 566554
No 18
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=3.7e-42 Score=357.61 Aligned_cols=335 Identities=16% Similarity=0.124 Sum_probs=231.3
Q ss_pred ceeEEeeeHHHHHHHhhh--hhhhccCCCcccchh-hccccccccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEe
Q 012838 37 GICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVR 113 (455)
Q Consensus 37 ~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKr 113 (455)
|.---.|.||.+++.+.+ .++....+++.|.+. ...+..+++.+|||+++ ++|+ +.+| +.+||+|+
T Consensus 31 ~~~gg~~~p~~~~~~~~~i~~A~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~--~~Ls-~~~g--------g~~i~lK~ 99 (418)
T 1x1q_A 31 GPYGGRYVPETLIPALEELEAAYREAKKDPAFLEELDHYLRQFAGRPTPLYHA--KRLS-EYWG--------GAQVFLKR 99 (418)
T ss_dssp TTEECCCCCTTTHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTCCSCCEEEC--HHHH-HHHT--------SSEEEEEE
T ss_pred CCcCCEECCchhhhhHHHHHHHHHHHhhChHHHHHHHHhhhcccCCCCCcEEh--HHhH-hhcC--------CceEEEEE
Confidence 444568999999888865 444443334344333 34444567789999999 8887 5443 57999999
Q ss_pred CCCCCCCcccchhhhHHhhHHHHHhCCCCEEEe-cCchhHHHH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCC
Q 012838 114 DDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYG 187 (455)
Q Consensus 114 Edl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt-~G~~~sNha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~G 187 (455)
||+| | +||||+|++.+.+..|+++|+++||+ +|+ +||+ +|+++|++|+||||..+++.+..|+.+++.||
T Consensus 100 E~l~-p-tGSfK~R~a~~~i~~a~~~g~~~vI~~~ss--GNhg~avA~aaa~~Gi~~~I~mp~~~~~~~~~kv~~~~~~G 175 (418)
T 1x1q_A 100 EDLL-H-TGAHKINNTLGQALLARRMGKRRVIAETGA--GQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLG 175 (418)
T ss_dssp GGGS-G-GGBTTHHHHHHHHHHHHHHTCCEEEEECSS--SHHHHHHHHHHHHHTCEEEEEEEHHHHHTCHHHHHHHHHTT
T ss_pred ccCC-c-CccHHHHHHHHHHHHHHHcCCCEEEEecCc--hHHHHHHHHHHHHcCCCEEEEECCCcchhhhHHHHHHHHCC
Confidence 9997 7 89999999999988888889888875 444 4565 46699999999999754333445667899999
Q ss_pred c-EEEeCC--CchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhccccccccccccccccC-CeEEEecCC-C
Q 012838 188 K-VTYVPR--THYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCR-KKVLIVNEG-A 262 (455)
Q Consensus 188 A-V~~v~~--~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~y~ip~g-~ 262 (455)
| |+.++. ..|++..+. |.+ .| .+.. ...|+++.+ +
T Consensus 176 A~Vv~v~~~~~~~~~a~~~----a~~--------~~----------------------------~~~~~~~~~i~~~~~n 215 (418)
T 1x1q_A 176 AEVRPVAAGSRTLKDATNE----AIR--------DW----------------------------ITNVRTTFYILGSVVG 215 (418)
T ss_dssp CEEEEECSTTSSHHHHHHH----HHH--------HH----------------------------HHTTTTEEECCCCSSS
T ss_pred CEEEEECCCCCCHHHHHHH----HHH--------HH----------------------------HHhCCCcEEEeCCccC
Confidence 9 999985 235432111 100 01 1122 234544322 2
Q ss_pred CcHH--HH-HHHHHHHHHHHHHHH-c-CCCCCCEEEEeCCCcchHHHHHHHHHhc-CCCceEEEEeccCChh----h---
Q 012838 263 GDAV--AL-LGVFRLLQYLSQDHL-L-GRKRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTID----G--- 329 (455)
Q Consensus 263 ~np~--~~-~G~~t~~~Ei~eq~~-~-g~~~pD~vvvpvGtGgt~~Gl~~g~~~~-g~~~~vigVe~~g~~~----~--- 329 (455)
++|+ .+ .|+.+++.||++|+. . + ..||+||+|+||||+++|++.+|+++ ++.++|||||++++.. .
T Consensus 216 ~~p~~~~v~~gq~t~~~Ei~~Ql~~~~~-~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~~~vigVe~~g~~~~~~~~~~~ 294 (418)
T 1x1q_A 216 PHPYPMMVRDFQSVIGEEVKRQSLELFG-RLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAAS 294 (418)
T ss_dssp STTHHHHHHHHHTHHHHHHHHHHHHHHS-SCCSEEEEECSSSSHHHHHHHHHHTSCTTCCEEEEEEECCTTSSSCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhcC-CCCCEEEEecCCcHhHHHHHHHHHHhCCCCCeEEEEecCCcccccHHHHHH
Confidence 2443 34 489999999999983 1 3 46999999999999999999999987 7899999999998631 1
Q ss_pred HHHhhHh----------------H--HHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHHHHHHHh
Q 012838 330 YKQQEKN----------------L--ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLT 391 (455)
Q Consensus 330 ~~~~~~~----------------l--~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~La~~e 391 (455)
+...... . ...+++.+ .++.+....+.+.+...++.+.|+|+|+++++++|+++|
T Consensus 295 l~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~gl-------~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~e 367 (418)
T 1x1q_A 295 IGAGKRGVLHGSYMYLLYDHDGQITPAHSVSAGL-------DYPGVGPEHSYYADAGVAEYASVTDEEALEGFKLLARLE 367 (418)
T ss_dssp HHHTCEEEETTEEEEBCCC-----------------------CSBCCHHHHHHHHHTSEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHcCCeeeeccccccccccccccccCCceeeecc-------CCCCCCHHHHHHHhccCeEEEEECHHHHHHHHHHHHHhc
Confidence 1111000 0 01111111 111122233445555667889999999999999999999
Q ss_pred CCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhhhH
Q 012838 392 GILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLA 436 (455)
Q Consensus 392 GI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TG-G~~~~~~~~ 436 (455)
||+++| ++|++++++++++++ +.++++||+|+|| |+.++..+.
T Consensus 368 gi~~~~-~sa~a~a~a~~~~~~-~~~~~~Vv~vlsG~g~kd~~~~~ 411 (418)
T 1x1q_A 368 GIIPAL-ESAHAIAYAAKVVPE-MDKDQVVVINLSGRGDKDVTEVM 411 (418)
T ss_dssp SCCBCH-HHHHHHHHHHHHTTT-SCTTCEEEEEECBBGGGTHHHHH
T ss_pred CCcccc-hHHHHHHHHHHHHHh-cCCCCeEEEEECCCCCCCHHHHH
Confidence 999987 589999999988654 4568999999999 577877654
No 19
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=100.00 E-value=1.8e-41 Score=338.68 Aligned_cols=272 Identities=15% Similarity=0.061 Sum_probs=189.6
Q ss_pred cCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC----CEEEecCchhHH
Q 012838 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSA 153 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~----~~VVt~G~~~sN 153 (455)
.++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.+|++.|. ++||++++ +|
T Consensus 12 ~~~TPL~~l--~~l~-~~~---------g~~i~~K~E~~~-p-tgSfK~R~a~~~l~~a~~~g~~~~g~~vv~ass--GN 75 (308)
T 2egu_A 12 IGDTPAVKL--NRIV-DED---------SADVYLKLEFMN-P-GSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTS--GN 75 (308)
T ss_dssp SSCCCEEEC--CSSS-CTT---------SCEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECC--HH
T ss_pred cCCCCeEEC--Cccc-ccC---------CCEEEEEecccC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCC--CH
Confidence 389999999 8887 433 679999999995 8 799999999999999999887 68887432 56
Q ss_pred HH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012838 154 HA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 226 (455)
Q Consensus 154 ha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 226 (455)
|+ +|+.+|++|+||||...+. .+..+++.||| |+.++.. .|+++.+. |+++
T Consensus 76 ~g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~----a~~l--------------- 133 (308)
T 2egu_A 76 TGIGLAMVAAAKGYKAVLVMPDTMSL---ERRNLLRAYGAELVLTPGAQGMRGAIAK----AEEL--------------- 133 (308)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESCSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHHH---------------
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHHH---------------
Confidence 66 4569999999999987643 35667899999 9999864 23322211 1111
Q ss_pred HHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHH-HHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHH
Q 012838 227 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 305 (455)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~-~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl 305 (455)
.+..+. ++|.++.||.++ .||.+++.||++|+ + ..||+||+|+|||||++|+
T Consensus 134 ----------------------~~~~~~--~~~~~~~n~~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi 186 (308)
T 2egu_A 134 ----------------------VREHGY--FMPQQFKNEANPEIHRLTTGKEIVEQM--G-DQLDAFVAGVGTGGTITGA 186 (308)
T ss_dssp ----------------------HHHHCC--BCC--------------CHHHHHHHHH--T-TCCCEEEEEGGGTHHHHHH
T ss_pred ----------------------HHHCcC--CcCCcCCChhHHHHHHHHHHHHHHHHc--C-CCCCEEEEeeCCchhHHHH
Confidence 112222 346667788864 78999999999997 3 2599999999999999999
Q ss_pred HHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHH
Q 012838 306 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 385 (455)
Q Consensus 306 ~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r 385 (455)
+.+|+++++.++|+|||+++++... ..... ....+.++.+.+ .+.+.....++.+.|+|+|++++++
T Consensus 187 ~~~~k~~~~~~~vigve~~~~~~~~-~~~~~--~~~~~g~~~~~~----------~~~~~~~~~d~~~~v~d~e~~~a~~ 253 (308)
T 2egu_A 187 GKVLREAYPNIKIYAVEPADSPVLS-GGKPG--PHKIQGIGAGFV----------PDILDTSIYDGVITVTTEEAFAAAR 253 (308)
T ss_dssp HHHHHHHCTTCEEEEEEECC------------------------------------CCCCCCSCSEEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEEeCCCcccc-CCCCC--CcccCccCCCCC----------CHhHHHHhcCeEEEECHHHHHHHHH
Confidence 9999999999999999999874322 11110 011111221111 1123345567789999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012838 386 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 429 (455)
Q Consensus 386 ~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~ 429 (455)
+|++++||++|| |||++++++++++++. .++++||+|+||+.
T Consensus 254 ~l~~~~gi~~ep-ssa~a~aa~~~~~~~~-~~~~~vv~i~tg~g 295 (308)
T 2egu_A 254 RAAREEGILGGI-SSGAAIHAALKVAKEL-GKGKKVLAIIPSNG 295 (308)
T ss_dssp HHHHHHCCCBCH-HHHHHHHHHHHHHHHH-CTTCEEEEEECBBG
T ss_pred HHHHHhCceEcH-HHHHHHHHHHHHHHhc-CCCCeEEEEECCCC
Confidence 999999999999 6899999999887654 56889999999954
No 20
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=100.00 E-value=4.2e-41 Score=337.18 Aligned_cols=277 Identities=14% Similarity=0.003 Sum_probs=204.1
Q ss_pred cCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC----CEEEecCchhHH
Q 012838 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSA 153 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~----~~VVt~G~~~sN 153 (455)
.++|||+++ ++| + + |.+||+|+|++| | +||||||++.+++.+|++.|. ++||++++ +|
T Consensus 11 ~~~TPL~~l--~~l--~-~---------g~~i~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~ss--GN 72 (316)
T 1y7l_A 11 IGNTPLVRL--KHF--G-H---------NGNVVVKIEGRN-P-SYSVKCRIGANMVWQAEKDGTLTKGKEIVDATS--GN 72 (316)
T ss_dssp CCCCCEEEC--SSS--S-S---------TTCEEEEETTSS-G-GGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCC--SH
T ss_pred cCCCCcEEC--ccC--C-C---------CCEEEEEeccCC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCC--cH
Confidence 389999999 766 2 2 578999999996 8 799999999999999999887 78997643 56
Q ss_pred HH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012838 154 HA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 226 (455)
Q Consensus 154 ha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 226 (455)
|+ +|+++|++|+||||...+. .+..+++.||| |+.++.. .|++..+. |++
T Consensus 73 ~g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~----a~~---------------- 129 (316)
T 1y7l_A 73 TGIALAYVAAARGYKITLTMPETMSL---ERKRLLCGLGVNLVLTEGAKGMKGAIAK----AEE---------------- 129 (316)
T ss_dssp HHHHHHHHHHHHTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH----------------
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEeCCCCCHHHHHHH----HHH----------------
Confidence 65 4669999999999987543 35677899999 9998864 24432211 111
Q ss_pred HHHHhhhhhccccccccccccccccCCeE-EEecCCCCcHHHHH-HHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHH
Q 012838 227 ASLTAQKSRASCLGQMDAHKGIDNCRKKV-LIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 304 (455)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-y~ip~g~~np~~~~-G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~G 304 (455)
+.+..+++ |++ .++.||.... ||.+++.||++|+ + ..||+||+|+|||||++|
T Consensus 130 ---------------------~~~~~~~~~~~~-~~~~n~~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~G 184 (316)
T 1y7l_A 130 ---------------------IVASDPSRYVML-KQFENPANPQIHRETTGPEIWKDT--D-GKVDVVVAGVGTGGSITG 184 (316)
T ss_dssp ---------------------HHHHCTTTEECC-CTTTCTHHHHHHHHTHHHHHHHHT--T-TCEEEEEEECSSSHHHHH
T ss_pred ---------------------HHHhCCCCEEEC-CCCCCHHHHHHHHHHHHHHHHHHc--C-CCCCEEEEeCCccccHHH
Confidence 11222344 444 4668888655 6999999999996 3 259999999999999999
Q ss_pred HHHHHHhcC-CCceEEEEeccCChhhHHHhhHh-HHHHHHHHhccccc-CCCcCccccccchheeeccCcEEEeCCHHHH
Q 012838 305 LGLGAICLG-LPWEVTAIALVDTIDGYKQQEKN-LISEFKRLFGFLLK-KSSLNEVDGEIVHWVERCRPRKFGNVFEGEI 381 (455)
Q Consensus 305 l~~g~~~~g-~~~~vigVe~~g~~~~~~~~~~~-l~~~~~~~ig~~~~-~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~ 381 (455)
++.+|++++ +.++|||||++++..... .... ... .+...+ ++... ...+.+.+...++.+.|+|+|++
T Consensus 185 i~~~~k~~~~~~~~vi~ve~~~~~~~~~-~~~g~~~~-----~~~~~~~gi~~~---~~~~~~~~~~~d~~~~V~d~e~~ 255 (316)
T 1y7l_A 185 ISRAIKLDFGKQITSVAVEPVESPVISQ-TLAGEEVK-----PGPHKIQGIGAG---FIPKNLDLSIIDRVETVDSDTAL 255 (316)
T ss_dssp HHHHHHHTSCCCCEEEEEEETTSCHHHH-HHHTCCCC-----CCCCSCTTSCCS---SCCTTCCGGGCCEEEEECHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEecCCCccccc-cccCCccC-----CCCcccCcCCCC---CCCchhhHhhCCEEEEECHHHHH
Confidence 999999988 999999999999743221 1000 000 000000 00000 01233455667889999999999
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCc
Q 012838 382 EACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 430 (455)
Q Consensus 382 ~a~r~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~~ 430 (455)
+++++|++++||++||+ ||++++++++++++...++++||+|+|||..
T Consensus 256 ~a~~~l~~~~gi~~eps-sa~~laa~~~~~~~~~~~~~~vv~i~tg~g~ 303 (316)
T 1y7l_A 256 ATARRLMAEEGILAGIS-SGAAVAAADRLAKLPEFADKLIVVILPSASE 303 (316)
T ss_dssp HHHHHHHHHHCCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBBCS
T ss_pred HHHHHHHHhhCCeEcHH-HHHHHHHHHHHHHhcCCCCCeEEEEECCCCc
Confidence 99999999999999997 8999999998876542368899999999653
No 21
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}
Probab=100.00 E-value=4.8e-42 Score=350.99 Aligned_cols=293 Identities=12% Similarity=0.058 Sum_probs=216.9
Q ss_pred CCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHH-hCCCCEEEecCchhHHHH--
Q 012838 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHA-- 155 (455)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~-~~G~~~VVt~G~~~sNha-- 155 (455)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||||.+.+++.++. +.+.++||++|+ |||+
T Consensus 59 ~~TPL~~l--~~l~-~~~---------g~~i~~K~E~~~-p-tgSfKdRga~~~i~~l~~~~~~~~vv~ass--GN~g~a 122 (366)
T 3iau_A 59 IESPLELA--EKLS-DRL---------GVNFYIKREDKQ-R-VFSFKLRGAYNMMSNLSREELDKGVITASA--GNHAQG 122 (366)
T ss_dssp CCCCEEEC--HHHH-HHH---------TSEEEEEEGGGS-T-TSBTTHHHHHHHHHTSCHHHHHHCEEEECS--SHHHHH
T ss_pred CCCCcEEh--hhhh-Hhh---------CCEEEEEecCCC-C-CcchHHHHHHHHHHHHHHhCCCCEEEEeCC--CHHHHH
Confidence 89999999 8887 433 579999999997 8 79999999988888753 334567887554 5665
Q ss_pred ---HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012838 156 ---TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 231 (455)
Q Consensus 156 ---~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 231 (455)
+|+++|++|+||||...+.. +..+++.||| |+.+++ .|+++.+. |+++
T Consensus 123 ~A~aa~~~G~~~~iv~P~~~~~~---k~~~~~~~GA~V~~v~~-~~~~~~~~----a~~~-------------------- 174 (366)
T 3iau_A 123 VALAGQRLNCVAKIVMPTTTPQI---KIDAVRALGGDVVLYGK-TFDEAQTH----ALEL-------------------- 174 (366)
T ss_dssp HHHHHHHTTCCEEEEECTTCCHH---HHHHHHHTTCEEEECCS-SHHHHHHH----HHHH--------------------
T ss_pred HHHHHHHhCCceEEEeCCCCCHH---HHHHHHHCCCeEEEECc-CHHHHHHH----HHHH--------------------
Confidence 45699999999999876543 4566899999 999985 46643322 1111
Q ss_pred hhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHHHh
Q 012838 232 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 311 (455)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~~~ 311 (455)
.+..+..|+. ++.||....||.+++.||++|+ ..||+||+|+|+|||++|++.++++
T Consensus 175 -----------------~~~~~~~~i~--~~~n~~~i~g~~t~~~Ei~~q~----~~~d~vvvpvG~GG~~~Gi~~~~k~ 231 (366)
T 3iau_A 175 -----------------SEKDGLKYIP--PFDDPGVIKGQGTIGTEINRQL----KDIHAVFIPVGGGGLIAGVATFFKQ 231 (366)
T ss_dssp -----------------HHHHTCEECC--SSSSHHHHHHHHHHHHHHHHHC----CSEEEEEEECSSSHHHHHHHHHHHH
T ss_pred -----------------HHhcCCEecC--CCCChHHHHHHHHHHHHHHHhc----CCCCEEEEccCchHHHHHHHHHHHH
Confidence 1112334443 3458888899999999999996 4799999999999999999999999
Q ss_pred cCCCceEEEEeccCChhhHHHhhHhH-HH-HHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHHHHHH
Q 012838 312 LGLPWEVTAIALVDTIDGYKQQEKNL-IS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 389 (455)
Q Consensus 312 ~g~~~~vigVe~~g~~~~~~~~~~~l-~~-~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~La~ 389 (455)
+++.++|+|||+.++........... .. ....++.. ++....+....+.+++++.++.+.|+|+|++++++++++
T Consensus 232 ~~~~~~vigVe~~~~~~l~~~~~~g~~~~~~~~~tia~---gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 308 (366)
T 3iau_A 232 IAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFAD---GVAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYD 308 (366)
T ss_dssp HSTTSEEEEEEEGGGCHHHHHHHHTSCCEESCCCCSSG---GGCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEeecCChHHHHHHHcCCCCcCCCccchhh---hhcCCCCcHHHHHHHHhcCCCceeECHHHHHHHHHHHHH
Confidence 99999999999998754332110000 00 00000000 111112233456777888999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhhHHHHHHH
Q 012838 390 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSS 442 (455)
Q Consensus 390 ~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~~~~~~~~~ry~~~ 442 (455)
++||++||+ ||++++++++++++...++++||+||||||.++..+.+-..+.
T Consensus 309 ~~gi~~ep~-sa~alaa~~~~~~~~~~~g~~Vv~i~tGgn~d~~~l~~~~~~~ 360 (366)
T 3iau_A 309 EGRNILETS-GAVAIAGAAAYCEFYKIKNENIVAIASGANMDFSKLHKVTELA 360 (366)
T ss_dssp HHSCCCCHH-HHHHHHHHHHHHHHTTCCSCEEEEEECBCCCCGGGHHHHHHHH
T ss_pred HcCcEEcHH-HHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCHHHHHHHHHhh
Confidence 999999997 8999999999876542358999999999999988876544443
No 22
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=100.00 E-value=3e-41 Score=336.50 Aligned_cols=272 Identities=14% Similarity=0.019 Sum_probs=205.4
Q ss_pred cCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC----C--EEEecCchh
Q 012838 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----T--DLVTCGGCQ 151 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~----~--~VVt~G~~~ 151 (455)
.++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.+|.+.|. + +||++++
T Consensus 7 ~~~TPL~~~--~~l~-~~~---------g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~ass-- 70 (304)
T 1ve1_A 7 IGKTPVVRL--AKVV-EPD---------MAEVWVKLEGLN-P-GGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTS-- 70 (304)
T ss_dssp CCCCCEEEC--CSSS-CTT---------SCEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCC--
T ss_pred cCCCCcEEC--cccc-ccc---------CCEEEEEecccC-C-CCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCC--
Confidence 379999999 8887 433 579999999996 8 799999999999999999887 6 8886422
Q ss_pred HHHH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCc-hhhHHHHHHHHhhhhhcCCCCccchhhh
Q 012838 152 SAHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEI 224 (455)
Q Consensus 152 sNha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~-~~~~~~~~~~~A~~la~~~g~~~w~~~~ 224 (455)
+||+ +|+++|++|+||||...+. .+..+++.||| |+.++... |+++.+. |++
T Consensus 71 GN~g~a~A~~a~~~G~~~~i~~p~~~~~---~k~~~~~~~Ga~V~~~~~~~~~~~~~~~----a~~-------------- 129 (304)
T 1ve1_A 71 GNTGIGLAMIAASRGYRLILTMPAQMSE---ERKRVLKAFGAELVLTDPERRMLAAREE----ALR-------------- 129 (304)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEETTCCH---HHHHHHHHTTCEEEEECTTTHHHHHHHH----HHH--------------
T ss_pred cHHHHHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHH--------------
Confidence 4555 4569999999999987543 46677899999 99998642 4432221 111
Q ss_pred hHHHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHH-HHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHH
Q 012838 225 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLG-VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAV 303 (455)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G-~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~ 303 (455)
+.+. ++.| ++.++.||....| |.+++.||++|+ + ..||+||+|+|+|||++
T Consensus 130 -----------------------l~~~-~~~~-~~~~~~n~~~~~g~~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~ 181 (304)
T 1ve1_A 130 -----------------------LKEE-LGAF-MPDQFKNPANVRAHYETTGPELYEAL--E-GRIDAFVYGSGTGGTIT 181 (304)
T ss_dssp -----------------------HHHH-HTCB-CCCTTTCHHHHHHHHHTHHHHHHHHT--T-TCCSEEEEECSSSHHHH
T ss_pred -----------------------HHhc-CCCE-eCCCCCChhHHHHHHHHHHHHHHHHc--C-CCCCEEEEecCCchhHH
Confidence 1111 1223 3556789999999 699999999996 3 25999999999999999
Q ss_pred HHHHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHH
Q 012838 304 GLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 383 (455)
Q Consensus 304 Gl~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a 383 (455)
|++.+|+++.+.++|||||+++++... ..... ....+.++.+ ...+.+.+...++.+.|+|+|++++
T Consensus 182 Gi~~~~k~~~~~~~vi~ve~~~~~~~~-~g~~~--~~~~~gl~~~----------~~~~~~~~~~~d~~~~V~d~e~~~a 248 (304)
T 1ve1_A 182 GVGRYLKERIPHVKVIAVEPARSNVLS-GGKMG--QHGFQGMGPG----------FIPENLDLSLLDGVIQVWEEDAFPL 248 (304)
T ss_dssp HHHHHHHTTCTTCEEEEEEEGGGCTTT-TCCCC--CCSCTTSCCS----------SCCTTCCGGGCSEEEEECHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEecCCCcccc-CCCCC--CcccCCCCCC----------CCChhhhhhhCCEEEEECHHHHHHH
Confidence 999999999999999999999874321 11000 0000111111 0122345566788999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012838 384 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 429 (455)
Q Consensus 384 ~r~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~ 429 (455)
+++|++++||++||+ ||++++++++++++ +.++++||+|+|||.
T Consensus 249 ~~~l~~~~gi~~eps-sa~a~aa~~~~~~~-~~~~~~vv~i~tg~g 292 (304)
T 1ve1_A 249 ARRLAREEGLFLGMS-SGGIVWAALQVARE-LGPGKRVACISPDGG 292 (304)
T ss_dssp HHHHHHHHCCCBCHH-HHHHHHHHHHHHHH-HCTTCEEEEEECBBS
T ss_pred HHHHHHHhCcEEcHH-HHHHHHHHHHHHHh-cCCCCeEEEEECCCC
Confidence 999999999999997 89999999988764 446889999999975
No 23
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A
Probab=100.00 E-value=1.5e-41 Score=353.25 Aligned_cols=338 Identities=13% Similarity=0.058 Sum_probs=222.9
Q ss_pred eEEeeeHHHHHHHhhh--hhhhccCCCcccchh-hccccccccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCC
Q 012838 39 CNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDD 115 (455)
Q Consensus 39 ~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEd 115 (455)
---.|.||++++.+.+ .++....++.+|++. ...+..|++.+|||+++ ++|+ +.+| +.+||+||||
T Consensus 37 ~gg~~~pe~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~g~~TPL~~~--~~Ls-~~~g--------g~~i~lK~E~ 105 (422)
T 2o2e_A 37 WGGRYVPEALMAVIEEVTAAYQKERVSQDFLDDLDRLQANYAGRPSPLYEA--TRLS-QHAG--------SARIFLKRED 105 (422)
T ss_dssp ----CCCGGGHHHHHHHHHHHHHHHTSTHHHHHHHHHTTTTSSCSCCEEEC--GGGG-GGTT--------TCEEEEECGG
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCeEEC--hhhH-hhcC--------CCeEEEEEcC
Confidence 4457999999988876 666666567666555 55556678889999999 9998 5553 5799999999
Q ss_pred CCCCCcccchhhhHHhhHHHHHhCCCCEEEe-cCchhHHHH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-
Q 012838 116 LLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK- 188 (455)
Q Consensus 116 l~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt-~G~~~sNha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA- 188 (455)
+| | +||||+|.+.+.+..|+++|+++||+ +|+ +||+ +|+++|++|+||||..+++.+..|+.+|+.|||
T Consensus 106 ln-p-tGSfK~R~a~~~~~~a~~~g~~~vI~~~ss--GNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~ 181 (422)
T 2o2e_A 106 LN-H-TGSHKINNVLGQALLARRMGKTRVIAETGA--GQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAE 181 (422)
T ss_dssp GC-C-SSTTHHHHHHHHHHHHHHTTCCEEEEEESS--SHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHHTTCE
T ss_pred CC-C-CCcHHHHHHHHHHHHHHHcCCCeEEEecCc--cHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHHCCCE
Confidence 97 6 79999999988888899999988774 444 4555 466999999999997644333457778999999
Q ss_pred EEEeCCC--chhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhccccccccccccccccCCeEEEecCC-CCc-
Q 012838 189 VTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGD- 264 (455)
Q Consensus 189 V~~v~~~--~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g-~~n- 264 (455)
|+.|+.+ .+++ +..+ |.+ .|.+ +.....|+++.. +++
T Consensus 182 Vv~v~~~~~~~~d--a~~~--a~~--------~~~~---------------------------~~~~~~yi~~s~~g~~p 222 (422)
T 2o2e_A 182 VVAVQTGSKTLKD--AINE--AFR--------DWVA---------------------------NADNTYYCFGTAAGPHP 222 (422)
T ss_dssp EEEECSTTSCHHH--HHHH--HHH--------HHHH---------------------------HTTTEEECCCCSSSCCC
T ss_pred EEEECCCCCCHHH--HHHH--HHH--------HHHh---------------------------cCCCcEEEeCCccCCCC
Confidence 9999753 3443 2111 100 1110 112234444322 123
Q ss_pred -HHHHH-HHHHHHHHHHHHHH-cCCCCCCEEEEeCCCcchHHHHHHHHHhcCCCceEEEEeccCChh-------hHHHhh
Q 012838 265 -AVALL-GVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTID-------GYKQQE 334 (455)
Q Consensus 265 -p~~~~-G~~t~~~Ei~eq~~-~g~~~pD~vvvpvGtGgt~~Gl~~g~~~~g~~~~vigVe~~g~~~-------~~~~~~ 334 (455)
|..+. |+.+++.||++|+. ..+..||+||+|+|+||+++|++.+|+ .++.++|||||++++.. .+....
T Consensus 223 ~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~-~~p~v~vigVe~~g~~~~~~~~~~~l~~g~ 301 (422)
T 2o2e_A 223 FPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFL-DDPGVRLVGFEAAGDGVETGRHAATFTAGS 301 (422)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGT-TCTTCEEEEEEECC----------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHh-cCCCCeEEEEecCCCcccchhHHHHHHcCC
Confidence 33444 67888999999973 212469999999999999999998886 47899999999998621 111111
Q ss_pred HhHHHHH--------------HHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHHHHHHHhCCcccccch
Q 012838 335 KNLISEF--------------KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYT 400 (455)
Q Consensus 335 ~~l~~~~--------------~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~La~~eGI~veP~ys 400 (455)
.....+. ..++.. ++.++.+....+.+.+...+..+.|+|+|+++++++|+++|||+++| ++
T Consensus 302 ~~~~~g~~~~~~~~~~g~~~~~~tia~---gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~~-es 377 (422)
T 2o2e_A 302 PGAFHGSFSYLLQDEDGQTIESHSISA---GLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAI-ES 377 (422)
T ss_dssp ------------------------------------------------CCEEEEECHHHHHHHHHHHHHHHCCCCCH-HH
T ss_pred ceeccccchhhcccccccccCCceeec---ccCCCCCCHHHHHHHHhCCeeEEEECHHHHHHHHHHHHHHcCCccCc-hH
Confidence 0000000 011111 11111122233445566678899999999999999999999999976 68
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhhhH
Q 012838 401 LAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLA 436 (455)
Q Consensus 401 gaalAgl~~l~~~~~~~g~~VV~I~TG-G~~~~~~~~ 436 (455)
+++++++++++++ +.++++||+|+|| |+.++..+.
T Consensus 378 a~A~a~a~~l~~~-~~~~~~vvvilsG~g~kd~~~~~ 413 (422)
T 2o2e_A 378 AHAVAGALKLGVE-LGRGAVIVVNLSGRGDKDVETAA 413 (422)
T ss_dssp HHHHHHHHHHHHH-HCTTCEEEEECCSCSSSHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEEeCCCCCCCHHHHH
Confidence 8999999888764 4568999999999 558877654
No 24
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=100.00 E-value=2.8e-40 Score=334.02 Aligned_cols=278 Identities=13% Similarity=0.042 Sum_probs=206.8
Q ss_pred cCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC----CEE-EecCchhH
Q 012838 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDL-VTCGGCQS 152 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~----~~V-Vt~G~~~s 152 (455)
-++|||+++ +++. .+ |.+||+|+|++| | +||||+|++.+++.+|++.|. ++| |++++ |
T Consensus 19 ig~TPL~~l--~~l~--~~---------g~~i~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSs--G 81 (334)
T 3tbh_A 19 IGQTPALYL--NKLN--NT---------KAKVVLKMECEN-P-MASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSS--G 81 (334)
T ss_dssp SSCCCEEEC--CTTC--CS---------SSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECS--S
T ss_pred cCCCCeEEC--Cccc--CC---------CCEEEEEeCCCC-C-ccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCC--C
Confidence 389999999 7762 11 679999999997 7 799999999999999999987 674 76543 5
Q ss_pred HHH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhh
Q 012838 153 AHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIF 225 (455)
Q Consensus 153 Nha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~ 225 (455)
||+ +|+.+|++|+||||...+. .+..+++.||| |+.++.. .|++ +.+. |++
T Consensus 82 N~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~---~~~~-a~~--------------- 139 (334)
T 3tbh_A 82 NTGVSLAHLGAIRGYKVIITMPESMSL---ERRCLLRIFGAEVILTPAALGMKG---AVAM-AKK--------------- 139 (334)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHH---HHHH-HHH---------------
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCchH---HHHH-HHH---------------
Confidence 665 4669999999999987653 35567899999 9999864 2332 2111 111
Q ss_pred HHHHHhhhhhccccccccccccccccCCeEEEecCCCCcHH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHH
Q 012838 226 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 304 (455)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~-~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~G 304 (455)
+.++.++.|++ .++.||. ...||.+++.||++|+ + ..||+||+|+|||||++|
T Consensus 140 ----------------------~~~~~~~~~~i-~~~~np~n~~~g~~t~~~Ei~~q~--~-~~~d~vv~pvG~GG~~aG 193 (334)
T 3tbh_A 140 ----------------------IVAANPNAVLA-DQFATKYNALIHEETTGPEIWEQT--N-HNVDCFIAGVGTGGTLTG 193 (334)
T ss_dssp ----------------------HHHHCTTEEEC-CTTTCHHHHHHHHHTHHHHHHHHT--T-SCCSEEEEECSSSHHHHH
T ss_pred ----------------------HHHhCCCEEEC-CccCChhHHHHHHHHHHHHHHHHh--C-CCCCEEEeccCCcHhHHH
Confidence 11222244444 3457887 4568899999999996 3 379999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHH
Q 012838 305 LGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 384 (455)
Q Consensus 305 l~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~ 384 (455)
++.++++..+.++|+|||++++..... .... ....+.++.+. ..+.+.+++.++.+.|+|+|+++++
T Consensus 194 i~~~~k~~~p~~~vigVe~~~~~~~~~-g~~~--~~~~~gi~~~~----------~~~~~~~~~~d~~~~V~d~e~~~a~ 260 (334)
T 3tbh_A 194 VARALKKMGSHARIVAVEPTESPVLSG-GKPG--PHKIQGIGPGF----------VPDVLDRSLIDEVLCVAGDDAIETA 260 (334)
T ss_dssp HHHHHHHTTCCCEEEEEEETTSCTTTT-CCCC--CCSCTTSCCSS----------CCTTCCGGGCSEEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEeeCCchHhhC-CCcC--CeecCCCCCCc----------CCHHHHHHhCCEEEEECHHHHHHHH
Confidence 999999999999999999998754221 1000 00001112111 1234556778889999999999999
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhh
Q 012838 385 HRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFG 434 (455)
Q Consensus 385 r~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TG-G~~~~~~ 434 (455)
++|++++||++||+ +|++++++++++++.+.++++||+|+|| |+..+..
T Consensus 261 ~~l~~~egi~~eps-sgaa~aa~~~~~~~~~~~g~~Vv~v~t~~g~ky~~~ 310 (334)
T 3tbh_A 261 LKLTRSDGVFCGFS-GGANVYAALKIAERPEMEGKTIVTVIPSFGERYLST 310 (334)
T ss_dssp HHHHHHHCCCBCHH-HHHHHHHHHHHHHSGGGTTCEEEEEECBBGGGGTTS
T ss_pred HHHHHHcCeEEcHH-HHHHHHHHHHHHHhccCCcCeEEEEECCCCccccCc
Confidence 99999999999997 8999999998876544578999999996 6666554
No 25
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=100.00 E-value=2.9e-41 Score=342.37 Aligned_cols=275 Identities=11% Similarity=0.030 Sum_probs=206.5
Q ss_pred cCCCCCcccccCCCCCC----cCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC----CEEEecCc
Q 012838 78 HGGGPLGGISFLNNTCP----FLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGG 149 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~----~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~----~~VVt~G~ 149 (455)
.++|||+++ ++|+ + .+ |.+||+|+|++| | +||||||++.+++.+|.+.|. ++||++++
T Consensus 21 ~g~TPL~~~--~~l~-~~~~~~~---------g~~v~~K~E~~~-p-tGSfKdR~a~~~l~~a~~~g~~~~g~~vv~aSs 86 (343)
T 2pqm_A 21 IGGTPLVEL--HGVT-EHPRIKK---------GTRILVKLEYFN-P-MSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTS 86 (343)
T ss_dssp SSCCCEEEC--CGGG-CSTTSCT---------TCEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHHTSSCTTCEEEEECS
T ss_pred cCCCCeEEC--Cccc-ccccccc---------CcEEEEEeccCC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 389999999 8887 4 22 679999999996 8 899999999999999998887 68887543
Q ss_pred hhHHHH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchh
Q 012838 150 CQSAHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCN 222 (455)
Q Consensus 150 ~~sNha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~ 222 (455)
+||+ +|+.+|++|+||||...+. .++.+++.||| |+.++.. .|+++.+. |++
T Consensus 87 --GN~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~------------ 145 (343)
T 2pqm_A 87 --GNTGIALCQAGAVFGYRVNIAMPSTMSV---ERQMIMKAFGAELILTEGKKGMPGAIEE----VNK------------ 145 (343)
T ss_dssp --SHHHHHHHHHHHHHTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH------------
T ss_pred --cHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCHHHHHHH----HHH------------
Confidence 4555 4669999999999987543 35677899999 9999863 23322211 111
Q ss_pred hhhHHHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHH-HHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcch
Q 012838 223 EIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTT 301 (455)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~-~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt 301 (455)
+.+..+.+|+++.++.||... .||.+++ ||++|+ + ..||+||+|+|||||
T Consensus 146 -------------------------~~~~~~~~y~~~~~~~n~~n~~~g~~t~~-Ei~~q~--~-~~~d~vvvpvG~GG~ 196 (343)
T 2pqm_A 146 -------------------------MIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDT--D-GEVDIVVSAVGTSGT 196 (343)
T ss_dssp -------------------------HHHHSTTTEEECCTTTCHHHHHHHHHHHH-HHHHHT--T-TCEEEEEEECSSSHH
T ss_pred -------------------------HHHhCCCcEEECCCCCChhHHHHHHHHHH-HHHHHc--C-CCCCEEEEecCCchh
Confidence 122233454566777899865 7899999 999996 3 269999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHH
Q 012838 302 AVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEI 381 (455)
Q Consensus 302 ~~Gl~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~ 381 (455)
++|++.+|+++++.++|+|||+++++.... .... ....+.++.+ ...+.+.+...++.+.|+|+|++
T Consensus 197 ~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~-~~~~--~~~~~gl~~~----------~~~~~~~~~~~d~~~~Vsd~e~~ 263 (343)
T 2pqm_A 197 VIGVAEKLKEKKKGIKIIAVEPEESAVLEG-KAKG--PHGIQGIGAG----------FIPDIYKKEFVDEIIPIKTQDAW 263 (343)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEEGGGCTTTT-CCCC--CCCCTTCCCS----------SCCTTCCGGGCCEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEEEecCCCccccc-CCCC--CeecCccCCC----------CCCHHHHHHhCCeEEEECHHHHH
Confidence 999999999999999999999998743221 0000 0000111111 01233455667889999999999
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCc
Q 012838 382 EACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 430 (455)
Q Consensus 382 ~a~r~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~~ 430 (455)
+++++|++++||++||+ ||++++++++++++...++++||+|+|||..
T Consensus 264 ~a~~~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~vv~i~tg~g~ 311 (343)
T 2pqm_A 264 KMARAVVKYDGIMCGMS-SGAAILAGLKEAEKPENEGKTIVIIVPSCGE 311 (343)
T ss_dssp HHHHHHHHHHCCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBBGG
T ss_pred HHHHHHHHHhCCeEchh-HHHHHHHHHHHHHhcCCCCCeEEEEEcCCCc
Confidence 99999999999999997 8999999998876533368899999999653
No 26
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*
Probab=100.00 E-value=1.3e-41 Score=349.95 Aligned_cols=338 Identities=14% Similarity=0.048 Sum_probs=229.1
Q ss_pred EeeeHHHHHHHhhh--hhhhccCCCcccchh-hccccccccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCC
Q 012838 41 VRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLL 117 (455)
Q Consensus 41 ~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~ 117 (455)
-.|.||.++..+.+ .++....++.+|++. ......+++.+|||+++ ++|+ +.+| +.+||+|+|++|
T Consensus 8 g~~~p~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~--~~l~-~~~g--------~~~i~~K~E~~~ 76 (388)
T 1v8z_A 8 GQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYA--KRLT-EKIG--------GAKIYLKREDLV 76 (388)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEEC--HHHH-HHHT--------SSEEEEEEGGGS
T ss_pred CEeCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCCCCCceeh--HhhH-hhcC--------CceEEEEeccCC
Confidence 46889999887765 555555556666554 33333457778999999 8887 4442 479999999997
Q ss_pred CCCcccchhhhHHhhHHHHHhCCCCEEEe-cCchhHHHH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EE
Q 012838 118 HPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VT 190 (455)
Q Consensus 118 ~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt-~G~~~sNha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~ 190 (455)
| +||||+|++.+++..|+++|.++||+ +|+ +||+ +|+++|++|+||||....+....|+.+++.||| |+
T Consensus 77 -p-tGSfK~R~a~~~i~~a~~~g~~~vv~~~ss--GN~g~a~A~aa~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~ 152 (388)
T 1v8z_A 77 -H-GGAHKTNNAIGQALLAKFMGKTRLIAETGA--GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVI 152 (388)
T ss_dssp -T-TSBTHHHHHHHHHHHHHHTTCCEEEEEESS--SHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEE
T ss_pred -C-CCCHHHHHHHHHHHHHHHcCCCEEEEecCc--hHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEEE
Confidence 8 89999999999998999999988885 433 3455 466999999999997532222235677899999 99
Q ss_pred EeCCC--chhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhccccccccccccccccCCeEEEecCCCCc--HH
Q 012838 191 YVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGD--AV 266 (455)
Q Consensus 191 ~v~~~--~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n--p~ 266 (455)
.++.. .|++..+. +.+ .+.+..++.++++.++.| |.
T Consensus 153 ~~~~~~~~~~~a~~~----a~~------------------------------------~~~~~~~~~~~~~~~~~n~~p~ 192 (388)
T 1v8z_A 153 PVNSGSRTLKDAINE----ALR------------------------------------DWVATFEYTHYLIGSVVGPHPY 192 (388)
T ss_dssp EECSTTSSHHHHHHH----HHH------------------------------------HHHHHTTTEEECCCSSCSSTTH
T ss_pred EECCCCCCHHHHHHH----HHH------------------------------------HHHHhCCCceEecCCccCCCCc
Confidence 99752 34432111 100 001122234456655543 33
Q ss_pred --HH-HHHHHHHHHHHHHHH-cCCCCCCEEEEeCCCcchHHHHHHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHH
Q 012838 267 --AL-LGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFK 342 (455)
Q Consensus 267 --~~-~G~~t~~~Ei~eq~~-~g~~~pD~vvvpvGtGgt~~Gl~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~ 342 (455)
.+ .|+.+++.||++|+. ..+..||+||+|+|||||++|++.+++ .++.++|||||++++..........+..+..
T Consensus 193 ~~~~~~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~-~~~~~~vigve~~~~~~~~~~~~~~l~~g~~ 271 (388)
T 1v8z_A 193 PTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV-NDKKVKLVGVEAGGKGLESGKHSASLNAGQV 271 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHHCEE
T ss_pred hhHHHHHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHh-hCCCceEEEEccCccccchhhhhHHHhcCCc
Confidence 33 389999999999973 112469999999999999999999998 4889999999999864211000001111000
Q ss_pred H----------------Hhccccc--CCCcCccccccchheeeccCcEEEeCCHHHHHHHHHHHHHhCCcccccchHHHH
Q 012838 343 R----------------LFGFLLK--KSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAW 404 (455)
Q Consensus 343 ~----------------~ig~~~~--~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~La~~eGI~veP~ysgaal 404 (455)
. ......+ ++..+.+....+.+.+...++.+.|+|+|+++++++|+++|||+++| |+|+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~g~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~-~sa~a~ 350 (388)
T 1v8z_A 272 GVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPAL-ESAHAV 350 (388)
T ss_dssp EEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCBCH-HHHHHH
T ss_pred eeccccccccccccccccCCCceeeeccccCCCChhHHHHHhcCCcEEEEECHHHHHHHHHHHHHhcCCeecc-cHHHHH
Confidence 0 0000000 01111122233445556667899999999999999999999999987 588999
Q ss_pred HHHHHHhhhcCCCCCeEEEEecCCC-cchhhhH
Q 012838 405 EMATLLSDEKLKQDADVVMLHTGGT-LGMFGLA 436 (455)
Q Consensus 405 Agl~~l~~~~~~~g~~VV~I~TGG~-~~~~~~~ 436 (455)
+++.+++++ +.++++||+|+|||+ .++..+.
T Consensus 351 a~a~~l~~~-~~~~~~vv~i~tg~g~k~~~~~~ 382 (388)
T 1v8z_A 351 AYAMKLAKE-MSRDEIIIVNLSGRGDKDLDIVL 382 (388)
T ss_dssp HHHHHHHHT-SCTTCEEEEEECBBSGGGHHHHH
T ss_pred HHHHHHHHh-cCCCCEEEEEECCCCccCHHHHH
Confidence 999988764 567899999999965 6766643
No 27
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=100.00 E-value=2e-40 Score=344.12 Aligned_cols=280 Identities=13% Similarity=0.028 Sum_probs=210.0
Q ss_pred ccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC-----CEEEecCchh
Q 012838 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQ 151 (455)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~-----~~VVt~G~~~ 151 (455)
..++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.+|++.|. ++||++++
T Consensus 120 ~ig~TPLv~l--~~Ls-~~~---------g~~I~lK~E~ln-p-tGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSs-- 183 (430)
T 4aec_A 120 LIGKTPMVYL--NSIA-KGC---------VANIAAKLEIME-P-CCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTS-- 183 (430)
T ss_dssp GSSCCCEEEC--CGGG-TTC---------SSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECS--
T ss_pred cCCCCCeEEC--hhhh-hhc---------CCeEEEEECCCC-C-CCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECC--
Confidence 3589999999 8887 433 679999999997 7 799999999999999999987 67887544
Q ss_pred HHHH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhh
Q 012838 152 SAHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEI 224 (455)
Q Consensus 152 sNha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~ 224 (455)
|||+ +|+++|++|+||||+..+. .+..+++.||| |+.++.+ .|++ +.+ .|++
T Consensus 184 GNhG~AlA~aAa~~Gl~~~IvmP~~~s~---~k~~~~r~~GAeVv~v~~~~~~~~---a~~-~a~e-------------- 242 (430)
T 4aec_A 184 GNTGIGLAFIAASRGYRLILTMPASMSM---ERRVLLKAFGAELVLTDPAKGMTG---AVQ-KAEE-------------- 242 (430)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHH---HHH-HHHH--------------
T ss_pred CHHHHHHHHHHHHhCCEEEEEEcCCCCH---HHHHHHHHCCCEEEEECCCCChHH---HHH-HHHH--------------
Confidence 6666 4669999999999988653 35667899999 9999753 2332 211 1111
Q ss_pred hHHHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHH-HHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHH
Q 012838 225 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAV 303 (455)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~ 303 (455)
+.++.++.|+++ ++.||.. ..||.+++.||++|+ + ..||+||+|+|||||++
T Consensus 243 -----------------------l~~~~~~~~~i~-~~~np~~~~aG~~T~a~EI~eQl--~-~~~D~vVvpvG~GGtla 295 (430)
T 4aec_A 243 -----------------------ILKNTPDAYMLQ-QFDNPANPKIHYETTGPEIWDDT--K-GKVDIFVAGIGTGGTIT 295 (430)
T ss_dssp -----------------------HHHHSTTEEECC-TTTCTHHHHHHHHTHHHHHHHHT--T-SCEEEEEEECSSSHHHH
T ss_pred -----------------------HHHhcCCcEEec-CCCCccHHHHHHHHHHHHHHHHc--C-CCCCEEEEeCCccHHHH
Confidence 122233455554 5678876 689999999999996 3 37999999999999999
Q ss_pred HHHHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHH
Q 012838 304 GLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 383 (455)
Q Consensus 304 Gl~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a 383 (455)
|++.++++.++.++|||||++++..... ... .....+.++.+. ..+.+..++.++.|.|+|+|++++
T Consensus 296 Gi~~~lk~~~p~~kVigVep~~s~~l~~-g~~--~~~~i~Gl~~~~----------~p~~l~~~~vd~~v~Vsd~ea~~a 362 (430)
T 4aec_A 296 GVGRFIKEKNPKTQVIGVEPTESDILSG-GKP--GPHKIQGIGAGF----------IPKNLDQKIMDEVIAISSEEAIET 362 (430)
T ss_dssp HHHHHHHHHCTTSEEEEEEEGGGCGGGT-CCC--CCCSCTTSCCSS----------CCTTCCTTTCSEEEEECHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCcHhhC-CCc--cceeehhccCCC----------CcHHHHHHhCCeEEEECHHHHHHH
Confidence 9999999999999999999998754221 100 000001122111 122345567788999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhh
Q 012838 384 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFG 434 (455)
Q Consensus 384 ~r~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TG-G~~~~~~ 434 (455)
+++|+++|||++||+ +|++++|+++++++...++++||+|+|+ |...+..
T Consensus 363 ~r~La~~eGi~veps-sGaa~aAal~la~~~~~~g~~VV~Il~d~G~rylst 413 (430)
T 4aec_A 363 AKQLALKEGLMVGIS-SGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLST 413 (430)
T ss_dssp HHHHHHHHCCCBCHH-HHHHHHHHHHHTTSGGGTTCEEEEEECBBGGGGTTS
T ss_pred HHHHHHHCCCEEehH-HHHHHHHHHHHHHhcCCCcCeEEEEECCCCccccch
Confidence 999999999999996 8999999998876543468899999975 6665554
No 28
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=100.00 E-value=5.6e-41 Score=350.95 Aligned_cols=304 Identities=13% Similarity=0.069 Sum_probs=217.5
Q ss_pred CCCCCcccccCCCCC---CcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHH-----HHhCCC---------
Q 012838 79 GGGPLGGISFLNNTC---PFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV--------- 141 (455)
Q Consensus 79 g~TPL~~~~~~~l~~---~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~-----A~~~G~--------- 141 (455)
++|||+++ ++|+. +.+|. . .+.+||+|+|++| |.+||||+|++.+++.. |++.|.
T Consensus 77 ~~TPL~~~--~~l~~~l~~~~g~----~-~~~~v~lK~E~~~-p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~ 148 (442)
T 3ss7_X 77 IESELVAI--PAMQKRLEKEYQQ----P-ISGQLLLKKDSHL-PISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSK 148 (442)
T ss_dssp CCCCEEEC--HHHHHHHHHHHTC----C-CCSEEEEEEGGGC-TTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGG
T ss_pred CCCCcEEh--HhhhhHHHHhhCC----C-cCCeEEEeecCCC-CCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhh
Confidence 79999999 76540 11220 0 1479999999997 65799999999888875 788886
Q ss_pred ------------CEEEecCchhHHHH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHH
Q 012838 142 ------------TDLVTCGGCQSAHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEM 203 (455)
Q Consensus 142 ------------~~VVt~G~~~sNha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~ 203 (455)
.+||++++ +||+ +|+++|++|+||||...+. .++.+++.||| |+.|+++ |++..+.
T Consensus 149 l~~~~~r~~~~~~~vv~aSs--GNhg~avA~~aa~~G~~~~Ivmp~~~~~---~k~~~~r~~GA~Vv~v~~~-~~~a~~~ 222 (442)
T 3ss7_X 149 LLSPEFKQFFSQYSIAVGST--GNLGLSIGIMSARIGFKVTVHMSADARA---WKKAKLRSHGVTVVEYEQD-YGVAVEE 222 (442)
T ss_dssp GGSHHHHHHHHTSEEEEECS--SHHHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEESSC-HHHHHHH
T ss_pred hhhhhhhhhccCcEEEEECC--CHHHHHHHHHHHHhCCcEEEEECCCCCH---HHHHHHHHCCCEEEEECCC-HHHHHHH
Confidence 37775433 4555 4679999999999987653 35667899999 9999874 6542221
Q ss_pred HHHHhhhhhcCCCCccchhhhhHHHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 012838 204 LKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHL 283 (455)
Q Consensus 204 ~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~ 283 (455)
|.+ +.+..+..|+++. ..++....||.+++.||++|+.
T Consensus 223 ----a~~-------------------------------------~a~~~~~~~~i~~-~n~~~~~~G~~t~g~Ei~eQl~ 260 (442)
T 3ss7_X 223 ----GRK-------------------------------------AAQSDPNCFFIDD-ENSRTLFLGYSVAGQRLKAQFA 260 (442)
T ss_dssp ----HHH-------------------------------------HHHTCTTEEECCT-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHH-------------------------------------HHHhCCCceeCCC-CChHHHHHHHHHHHHHHHHHHH
Confidence 111 1222345677664 3335678999999999999984
Q ss_pred -cC----CCCCCEEEEeCCCcchHHHHHHHHHhc-CCCceEEEEeccCChhhHHHhhHhH-----HHHH---HHHhcccc
Q 012838 284 -LG----RKRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKNL-----ISEF---KRLFGFLL 349 (455)
Q Consensus 284 -~g----~~~pD~vvvpvGtGgt~~Gl~~g~~~~-g~~~~vigVe~~g~~~~~~~~~~~l-----~~~~---~~~ig~~~ 349 (455)
.+ +..||+||+|+|+||+++|++.+|+++ ++.++|+|||+++++.......... +.++ ..++.+
T Consensus 261 ~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~lk~~~~~~v~vigVep~~~~~~~~~~~~G~~~~~~v~~~g~~~~TiAd-- 338 (442)
T 3ss7_X 261 QQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAAD-- 338 (442)
T ss_dssp HHTCCCBTTBCEEEEEECSSSHHHHHHHHHHHHHHGGGEEEEEEEETTCCHHHHHHHHSCGGGCBGGGGTCCCCCSCG--
T ss_pred hhcCcccccCCCEEEEEeCCchHHHHHHHHHHHhcCCCCEEEEEEeCCchHHHHHHhcCCCceeeeccCCCchhhHHh--
Confidence 22 235789999999999999999999986 8999999999999865332211100 0110 001110
Q ss_pred cCCCcCccccccchheeeccCcEEEeCCHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhh-------cCCC----C
Q 012838 350 KKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-------KLKQ----D 418 (455)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~La~~eGI~veP~ysgaalAgl~~l~~~-------~~~~----g 418 (455)
++.++.+....+.+++++.++.+.|+|+|+++++++|+++|||++||+ +|+++|++++++++ ++.+ +
T Consensus 339 -gl~v~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~L~~~eGi~~eps-saaalAa~~~l~~~~~~~~~~~l~~~~~~~ 416 (442)
T 3ss7_X 339 -GLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPS-ALAGMAGPQRVCASVSYQQMHGFSAEQLRN 416 (442)
T ss_dssp -GGCCSBCCSSHHHHHGGGCCEEEEECHHHHHHHHHHHHHHHCCCCCGG-GGGGGGHHHHHHHCHHHHHHHTCCHHHHHT
T ss_pred -hcCCCCCchhHHHHHHhhCCeEEEECHHHHHHHHHHHHHHCCCeEcHH-HHHHHHHHHHHHhchhhHHhcCCCcccCCC
Confidence 122222333455667788999999999999999999999999999997 78999999988762 1222 7
Q ss_pred CeEEEEecCCCcchhhhHHHHHHH
Q 012838 419 ADVVMLHTGGTLGMFGLAQRYKSS 442 (455)
Q Consensus 419 ~~VV~I~TGG~~~~~~~~~ry~~~ 442 (455)
++||+|||||+.......+.|..+
T Consensus 417 ~~vv~i~TGG~~~~~~~~~~~~~~ 440 (442)
T 3ss7_X 417 TTHLVWATGGGMVPEEEMNQYLAK 440 (442)
T ss_dssp CEEEEEECBCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCCHHHHHHHHHh
Confidence 899999999988776666666543
No 29
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Probab=100.00 E-value=1.5e-41 Score=350.67 Aligned_cols=340 Identities=13% Similarity=0.061 Sum_probs=234.7
Q ss_pred ceeEEeeeHHHHHHHhhh--hhhhccCCCcccchh-hccccccccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEe
Q 012838 37 GICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVR 113 (455)
Q Consensus 37 ~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKr 113 (455)
|..--.|.||.+|+.+.+ .++....++..|++. ...+..+++.+|||+++ ++|+ +.+ |.+||+|+
T Consensus 9 ~~~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~--~~l~-~~~---------g~~i~lK~ 76 (396)
T 1qop_B 9 GEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKC--QNIT-AGT---------RTTLYLKR 76 (396)
T ss_dssp TTEEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEEC--HHHH-TTS---------SEEEEEEE
T ss_pred CCcCCEeCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCCCCcEEh--hhhh-hcc---------CCeEEEEe
Confidence 455678999999998876 666666666666655 44445568889999999 8887 433 67999999
Q ss_pred CCCCCCCcccchhhhHHhhHHHHHhCCCCEEEe-cCchhHHHH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCC
Q 012838 114 DDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYG 187 (455)
Q Consensus 114 Edl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt-~G~~~sNha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~G 187 (455)
||+| | +||||+|.+.+++..|+++|+++||+ +|+ +||+ +|+++|++|+||||....+....|+.+|+.||
T Consensus 77 E~l~-p-tGSfK~R~a~~~~~~a~~~g~~~vi~e~ss--GNhg~a~A~aa~~~G~~~~i~mp~~~~~~~~~~~~~~~~~G 152 (396)
T 1qop_B 77 EDLL-H-GGAHKTNQVLGQALLAKRMGKSEIIAETGA--GQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMG 152 (396)
T ss_dssp GGGS-T-TSBTHHHHHHHHHHHHHHTTCCEEEEEESS--SHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTT
T ss_pred ccCC-C-CCcHHHHHHHHHHHHHHHcCcCEEEEecCc--hHHHHHHHHHHHHCCCcEEEEEcCCchhhhhhHHHHHHHCC
Confidence 9997 7 79999999998898899999999887 544 4565 46699999999999752222224567799999
Q ss_pred c-EEEeCCC--chhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhccccccccccccccccCCeEEEecCCCC-
Q 012838 188 K-VTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG- 263 (455)
Q Consensus 188 A-V~~v~~~--~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~- 263 (455)
| |+.|+.+ .|++.... |.+ .| .+..++.++++.++.
T Consensus 153 A~V~~v~~~~~~~~~a~~~----a~~--------~~----------------------------~~~~~~~~~~~~~~~n 192 (396)
T 1qop_B 153 AEVIPVHSGSATLKDACNE----ALR--------DW----------------------------SGSYETAHYMLGTAAG 192 (396)
T ss_dssp CEEEEECSTTSSHHHHHHH----HHH--------HH----------------------------HHHTTTEEECCCSSCS
T ss_pred CEEEEECCCCCCHHHHHHH----HHH--------HH----------------------------HhccCCcEEEeCCcCC
Confidence 9 9999752 34432111 110 01 111223344544433
Q ss_pred -cHH--HHH-HHHHHHHHHHHHHH--cCCCCCCEEEEeCCCcchHHHHHHHHHhcCCCceEEEEeccCChhhHHHhhHhH
Q 012838 264 -DAV--ALL-GVFRLLQYLSQDHL--LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNL 337 (455)
Q Consensus 264 -np~--~~~-G~~t~~~Ei~eq~~--~g~~~pD~vvvpvGtGgt~~Gl~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l 337 (455)
+|. .+. |+.+++.||++|+. .+ ..||+||+|+|||||++|++.+|+ .++.++|||||++++..........+
T Consensus 193 ~~p~~~~v~~g~~t~~~Ei~~Ql~~~~~-~~~d~vvvpvG~GG~~~Gi~~~~~-~~~~~~vigVe~~~~~~~~~~~~~~l 270 (396)
T 1qop_B 193 PHPYPTIVREFQRMIGEETKAQILDKEG-RLPDAVIACVGGGSNAIGMFADFI-NDTSVGLIGVEPGGHGIETGEHGAPL 270 (396)
T ss_dssp STTHHHHHHHTTTHHHHHHHHHHHHHHS-SCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEETBGGGTBSCCHH
T ss_pred CCCchHHHHHHHhHHHHHHHHHHHHhcC-CCCCEEEEcCCchHHHHHHHHHHh-cCCCCEEEEEeCCCccccchhhHHHH
Confidence 333 344 78889999999973 13 469999999999999999999998 58899999999998531100000001
Q ss_pred HHHHH------------HHh----ccccc--CCCcCccccccchheeeccCcEEEeCCHHHHHHHHHHHHHhCCcccccc
Q 012838 338 ISEFK------------RLF----GFLLK--KSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVY 399 (455)
Q Consensus 338 ~~~~~------------~~i----g~~~~--~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~La~~eGI~veP~y 399 (455)
..+.. +.. ....+ ++..+.++...+.+.+...+..+.|+|+|+++++++|+++|||+++| +
T Consensus 271 ~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~-~ 349 (396)
T 1qop_B 271 KHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPAL-E 349 (396)
T ss_dssp HHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCBCH-H
T ss_pred HcCCeeeeccchhhhcccccCCcCCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCcccc-c
Confidence 11000 000 00000 01111122233445566678899999999999999999999999887 5
Q ss_pred hHHHHHHHHHHhhhcCC-CCCeEEEEecCC-CcchhhhH
Q 012838 400 TLAAWEMATLLSDEKLK-QDADVVMLHTGG-TLGMFGLA 436 (455)
Q Consensus 400 sgaalAgl~~l~~~~~~-~g~~VV~I~TGG-~~~~~~~~ 436 (455)
+|++++++.+++++ +. ++++||+|+||| +.++..+.
T Consensus 350 sa~a~a~a~~l~~~-~~~~~~~vv~i~tg~g~k~~~~~~ 387 (396)
T 1qop_B 350 SSHALAHALKMMRE-QPEKEQLLVVNLSGRGDKDIFTVH 387 (396)
T ss_dssp HHHHHHHHHHHHHH-STTSCEEEEEEECBBCGGGHHHHH
T ss_pred hHHHHHHHHHHHHh-cCCCCCeEEEEECCCCCCCHHHHH
Confidence 88999999888764 44 688999999996 57877654
No 30
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=100.00 E-value=5.4e-40 Score=328.72 Aligned_cols=279 Identities=15% Similarity=0.048 Sum_probs=203.6
Q ss_pred cCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC----CEEEecCchhHH
Q 012838 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSA 153 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~----~~VVt~G~~~sN 153 (455)
.++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.+|++.|. ++||+++ ++|
T Consensus 14 ~~~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tgSfK~R~a~~~l~~a~~~g~~~~g~~vv~as--sGN 77 (313)
T 2q3b_A 14 IGRTPLVRL--RRVT-DGA---------VADIVAKLEFFN-P-ANSVKDRIGVAMLQAAEQAGLIKPDTIILEPT--SGN 77 (313)
T ss_dssp SCCCCEEEC--SSSC-TTC---------CSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEEEC--SSH
T ss_pred cCCCceEEC--cccc-ccc---------CcEEEEEehhcC-C-CCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeC--CCH
Confidence 389999999 8887 432 679999999997 8 899999999999999999887 6788632 245
Q ss_pred HH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012838 154 HA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 226 (455)
Q Consensus 154 ha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 226 (455)
|+ +|+.+|++|+||||...+. .+..+++.||| |+.++.. .|+++.+. |++
T Consensus 78 ~g~alA~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~----a~~---------------- 134 (313)
T 2q3b_A 78 TGIALAMVCAARGYRCVLTMPETMSL---ERRMLLRAYGAELILTPGADGMSGAIAK----AEE---------------- 134 (313)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH----------------
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHCCCEEEEeCCCCCHHHHHHH----HHH----------------
Confidence 55 4669999999999987643 35667899999 9999863 23322211 111
Q ss_pred HHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHH-HHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHH
Q 012838 227 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLG-VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 305 (455)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G-~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl 305 (455)
+.+..+.. +++.++.||....| |.+++.||++|+ + ..||+||+|+|||||++|+
T Consensus 135 ---------------------l~~~~~~~-~~~~~~~n~~~~~~~~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi 189 (313)
T 2q3b_A 135 ---------------------LAKTDQRY-FVPQQFENPANPAIHRVTTAEEVWRDT--D-GKVDIVVAGVGTGGTITGV 189 (313)
T ss_dssp ---------------------HHHHCTTE-ECCCTTTCTHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHHH
T ss_pred ---------------------HHHhCCCE-EeCCCCCChhhHHHHHHHHHHHHHHHc--C-CCCCEEEEccCcchhHHHH
Confidence 11222333 35667789998765 999999999996 3 2699999999999999999
Q ss_pred HHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHH
Q 012838 306 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 385 (455)
Q Consensus 306 ~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r 385 (455)
+.+|++.++.++|||||+++++... ..... ....+.++... ..+.+.....++.+.|+|+|++++++
T Consensus 190 ~~~~k~~~~~~~vi~ve~~~~~~~~-~~~~g--~~~~~g~~~~~----------~~~~~~~~~~d~~~~v~d~e~~~a~~ 256 (313)
T 2q3b_A 190 AQVIKERKPSARFVAVEPAASPVLS-GGQKG--PHPIQGIGAGF----------VPPVLDQDLVDEIITVGNEDALNVAR 256 (313)
T ss_dssp HHHHHHHCTTCEEEEEEETTSCTTT-TCCCC--CCCCTTSCCSS----------CCTTCCGGGCCEEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEeeCCCcccc-CCCCC--CcccCCcCCCC----------CChhhhHhhccEEEEECHHHHHHHHH
Confidence 9999999999999999999875421 11000 00000111100 11223445667889999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEec-CCCcchhh
Q 012838 386 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHT-GGTLGMFG 434 (455)
Q Consensus 386 ~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~T-GG~~~~~~ 434 (455)
+|++++||++|| |||++++++++++++...++++||+|+| ||...+..
T Consensus 257 ~l~~~~gi~~ep-ssa~alaa~~~~~~~~~~~~~~vv~v~~~~g~ky~~~ 305 (313)
T 2q3b_A 257 RLAREEGLLVGI-SSGAATVAALQVARRPENAGKLIVVVLPDFGERYLST 305 (313)
T ss_dssp HHHHHHSCCBCH-HHHHHHHHHHHHHTCGGGTTCEEEEEECBBSGGGC--
T ss_pred HHHHHcCceEch-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc
Confidence 999999999999 6899999999887643225788886554 56665544
No 31
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=100.00 E-value=9.1e-40 Score=328.44 Aligned_cols=274 Identities=14% Similarity=0.022 Sum_probs=203.9
Q ss_pred cCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC-----CEEEecCchhH
Q 012838 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQS 152 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~-----~~VVt~G~~~s 152 (455)
.++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.+|++.|. ++||++++ +
T Consensus 13 ~~~TPL~~~--~~l~-~~~---------g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~ass--G 76 (322)
T 1z7w_A 13 IGNTPLVYL--NNVA-EGC---------VGRVAAKLEMME-P-CSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTS--G 76 (322)
T ss_dssp SSCCCEEEC--CGGG-TTC---------SSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECS--S
T ss_pred cCCCCeEEC--cccc-ccC---------CceEEEEecccC-C-CCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCC--C
Confidence 489999999 8887 432 579999999997 8 899999999999999999998 68886432 4
Q ss_pred HHH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhh
Q 012838 153 AHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIF 225 (455)
Q Consensus 153 Nha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~ 225 (455)
||+ +|+++|++|+||||...+. .+..+++.||| |+.++.. .|+++.+. |+
T Consensus 77 N~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~---------------- 133 (322)
T 1z7w_A 77 NTGVGLAFTAAAKGYKLIITMPASMST---ERRIILLAFGVELVLTDPAKGMKGAIAK----AE---------------- 133 (322)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HH----------------
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCH---HHHHHHHHcCCEEEEeCCCCCHHHHHHH----HH----------------
Confidence 555 4669999999999987543 36677899999 9998863 13322111 11
Q ss_pred HHHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHH-HHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHH
Q 012838 226 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 304 (455)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~G 304 (455)
++.++.++.|+++ ++.||.. ..||.+++.||++|+ + ..||+||+|+|||||++|
T Consensus 134 ---------------------~~~~~~~~~~~i~-~~~n~~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~G 188 (322)
T 1z7w_A 134 ---------------------EILAKTPNGYMLQ-QFENPANPKIHYETTGPEIWKGT--G-GKIDGFVSGIGTGGTITG 188 (322)
T ss_dssp ---------------------HHHHHCTTEEECC-TTTCTHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHH
T ss_pred ---------------------HHHHhCCCeEeCC-CCCChhHHHHHHHHHHHHHHHHh--c-CCCCEEEEecCccHhHHH
Confidence 1122233455544 4567665 358999999999996 3 369999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHH
Q 012838 305 LGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 384 (455)
Q Consensus 305 l~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~ 384 (455)
++.+|++..|.++|+|||++++.... ..... ....+.++.+ ...+.+.+...++.+.|+|+|+++++
T Consensus 189 i~~~~k~~~p~~~vigve~~~~~~~~-~~~~~--~~~~~gl~~~----------~~~~~~~~~~~~~~~~V~d~e~~~a~ 255 (322)
T 1z7w_A 189 AGKYLKEQNANVKLYGVEPVESAILS-GGKPG--PHKIQGIGAG----------FIPSVLNVDLIDEVVQVSSDESIDMA 255 (322)
T ss_dssp HHHHHHHHCTTCEEEEEEEGGGCGGG-TCCCC--CCSCTTSCCS----------SCCTTCCGGGCSEEEEECHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEEEecCCCcccc-CCCCC--CcccCcCcCC----------CCChhhhHHhCCEEEEECHHHHHHHH
Confidence 99999999999999999999874322 11000 0000111111 01233456677889999999999999
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012838 385 HRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 429 (455)
Q Consensus 385 r~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~ 429 (455)
++|++++||++||+ ||+++++++++.++...++++||+|||||.
T Consensus 256 ~~l~~~~gi~~~ps-sga~~aaa~~~~~~~~~~~~~vv~i~tg~g 299 (322)
T 1z7w_A 256 RQLALKEGLLVGIS-SGAAAAAAIKLAQRPENAGKLFVAIFPSFG 299 (322)
T ss_dssp HHHHHHHSCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBBG
T ss_pred HHHHHHcCceEchh-HHHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence 99999999999997 789999998876543235889999999975
No 32
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=100.00 E-value=2.1e-39 Score=328.88 Aligned_cols=277 Identities=13% Similarity=0.050 Sum_probs=200.6
Q ss_pred CCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC-----CEEEecCchhHH
Q 012838 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSA 153 (455)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~-----~~VVt~G~~~sN 153 (455)
|+|||+++ ++|+ +.+ |++||+|+|++| | +||||+|.+.++|.+|+++|. ++||++++ +|
T Consensus 34 G~TPLv~~--~~Ls-~~~---------G~~IylK~E~ln-p-tGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSs--GN 97 (344)
T 3vc3_A 34 GRTPLVYL--NKVT-EGC---------GAYVAVKQEMMQ-P-TASIADRPAYAMITDAEEKNLITPGKTTLIEPTS--GN 97 (344)
T ss_dssp CCCCEEEC--CSTT-TTC---------CSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEECS--SH
T ss_pred CCCceEEC--cccc-hhh---------CCEEEEEecCCC-C-CCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeCC--cH
Confidence 78999999 9998 543 689999999997 8 799999999999999988874 68886433 34
Q ss_pred HH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012838 154 HA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 227 (455)
Q Consensus 154 ha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 227 (455)
|+ +|+++|++|+||||...|.. ++.+++.||| |+.|+... ....+.... ++
T Consensus 98 ~g~alA~~aa~~G~~~~IvmP~~~~~~---k~~~~~~~GA~Vv~v~~~~-~~~~~~~~~-~~------------------ 154 (344)
T 3vc3_A 98 MGISMAFMAAMKGYKMVLTMPSYTSLE---RRVTMRAFGAELILTDPAK-GMGGTVKKA-YE------------------ 154 (344)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTSCHH---HHHHHHHTTCEEEEECGGG-HHHHHHHHH-HH------------------
T ss_pred HHHHHHHHHHHcCCcEEEEECCCChHH---HHHHHHHcCCEEEEECCCC-cchHHHHHH-HH------------------
Confidence 44 56799999999999987654 4567899999 99987642 111111110 00
Q ss_pred HHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHH-HHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHH
Q 012838 228 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 306 (455)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~-~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~ 306 (455)
+....++.+ .+.++.||..+ .|+.+++.||++|+ + +.||+||+|+||||+++|++
T Consensus 155 --------------------~~~~~~~~~-~~~~~~np~~~~a~~~t~g~EI~eq~--~-~~~d~vv~~vGgGG~~~Gi~ 210 (344)
T 3vc3_A 155 --------------------LLENTPNAH-MLQQFSNPANTQVHFETTGPEIWEDT--N-GQVDIFVMGIGSGGTVSGVG 210 (344)
T ss_dssp --------------------HHHHSTTEE-CCCTTTCHHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHHHH
T ss_pred --------------------HHhhccCce-eccccccchhHHHHHHHHHHHHHHHh--C-CCceEEEEecCCccchHHHh
Confidence 011123333 34556788654 56889999999996 4 47999999999999999999
Q ss_pred HHHHhcCCCceEEEEeccCChhhHHHh-hHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHH
Q 012838 307 LGAICLGLPWEVTAIALVDTIDGYKQQ-EKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 385 (455)
Q Consensus 307 ~g~~~~g~~~~vigVe~~g~~~~~~~~-~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r 385 (455)
.++++..|+++|||||+.++....... ....+. .++... . .........+..+.|+|+|++++++
T Consensus 211 ~~~k~~~p~v~vigVep~~s~~l~~~~~~~~~i~----g~g~~~-------~---~~~~~~~~~d~~v~v~d~eai~a~~ 276 (344)
T 3vc3_A 211 QYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHIT----GNGVGF-------K---PDILDLDVMEKVLEVSSEDAVNMAR 276 (344)
T ss_dssp HHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCT----TSCCSS-------C---CTTCCGGGCSEEEEECHHHHHHHHH
T ss_pred hhhHhhCCCceEEEEcCCCChhhcCCCCCCeeEe----cccccc-------c---CcccchhhceEEEEECHHHHHHHHH
Confidence 999999999999999998865322110 000000 111111 0 1112344566788999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchh
Q 012838 386 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMF 433 (455)
Q Consensus 386 ~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TG-G~~~~~ 433 (455)
+|+++|||+++|+ ||+++++++++++....++++||+|+|+ |...+.
T Consensus 277 ~L~~~eGi~v~~s-sga~~~aAl~~a~~~~~~g~~VV~il~d~G~rYls 324 (344)
T 3vc3_A 277 VLALKEGLMVGIS-SGANTVAALRLAQLPENKGKLIVTVHPSFGERYLS 324 (344)
T ss_dssp HHHHHHCCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBBGGGGTT
T ss_pred HHHHHCCCEEehh-HHHHHHHHHHHhccccCCCCEEEEEECCCchhhcc
Confidence 9999999999985 6788888888776444578999999986 654443
No 33
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=100.00 E-value=2e-40 Score=350.46 Aligned_cols=291 Identities=14% Similarity=0.116 Sum_probs=213.4
Q ss_pred CCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHh-CCCCEEEec--CchhHHHH
Q 012838 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED-HIVTDLVTC--GGCQSAHA 155 (455)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~-~G~~~VVt~--G~~~sNha 155 (455)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.++.+ .+.++||++ ||.+...|
T Consensus 30 ~~TPL~~l--~~Ls-~~~---------g~~V~lK~E~lq-P-tgSfKdRgA~n~i~~l~~~~~~~gVV~aSsGNhg~avA 95 (514)
T 1tdj_A 30 QVTPLQKM--EKLS-SRL---------DNVILVKREDRQ-P-VHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVA 95 (514)
T ss_dssp CCCCEEEC--HHHH-HHT---------TSEEEEECGGGS-T-TSSSTHHHHHHHHHTTTTSSCSSSCEEEECSSSHHHHH
T ss_pred CCCCcEEc--hhhH-Hhh---------CCeEEEEECCCC-C-cccHHHHHHHHHHHHHHHhcCCCEEEEECCcHHHHHHH
Confidence 69999999 8887 333 679999999997 8 899999999999988753 455678853 44333333
Q ss_pred -HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhh
Q 012838 156 -TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQK 233 (455)
Q Consensus 156 -~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~ 233 (455)
+|+++|++|+||||...|. .+..+++.||| |+.++.+ |++..+. |+++
T Consensus 96 ~aa~~lGi~~~IvmP~~~p~---~Kv~~~r~~GAeVvlv~~~-~dda~~~----a~el---------------------- 145 (514)
T 1tdj_A 96 FSSARLGVKALIVMPTATAD---IKVDAVRGFGGEVLLHGAN-FDEAKAK----AIEL---------------------- 145 (514)
T ss_dssp HHHHHTTCCEEEECCSSCCH---HHHHHHHHHSCEEECCCSS-HHHHHHH----HHHH----------------------
T ss_pred HHHHHcCCcEEEEECCCCCH---HHHHHHHHCCCEEEEECCC-HHHHHHH----HHHH----------------------
Confidence 5669999999999998764 35567899999 9998863 6643222 2211
Q ss_pred hhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHHHhcC
Q 012838 234 SRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLG 313 (455)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~~~~g 313 (455)
.+..+..|+.| +.||..+.|+.|++.||++|+ + .+|+||+|+||||+++|++.++++++
T Consensus 146 ---------------a~e~g~~~v~p--fdnp~~iaGqgTig~EI~eQl--~--~~D~vvvpvGgGGliaGia~~lk~~~ 204 (514)
T 1tdj_A 146 ---------------SQQQGFTWVPP--FDHPMVIAGQGTLALELLQQD--A--HLDRVFVPVGGGGLAAGVAVLIKQLM 204 (514)
T ss_dssp ---------------HHHHCCEECCS--SCCHHHHHHHHHHHHHHHHHC--T--TCCEEEEECSSSHHHHHHHHHHHHHC
T ss_pred ---------------HHhcCCEeeCC--CCCHHHHHHHHHHHHHHHHHC--C--CCCEEEEccCcHHHHHHHHHHHHHhC
Confidence 11223344444 348888999999999999996 2 49999999999999999999999999
Q ss_pred CCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHHHHHHHhCC
Q 012838 314 LPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGI 393 (455)
Q Consensus 314 ~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~La~~eGI 393 (455)
|.++|||||++++.....+......... ..++.-..++.+..++...+.+++++.++.+.|+|+|+.+++++|++++|+
T Consensus 205 P~~kVIgVep~~a~~l~~sl~~G~~~~l-~~v~tiadGiav~~~g~~~~~l~~~~vd~~v~Vsd~ei~~ai~~L~~~~gi 283 (514)
T 1tdj_A 205 PQIKVIAVEAEDSACLKAALDAGHPVDL-PRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRA 283 (514)
T ss_dssp TTCEEEEEEETTTCHHHHHHHHTSCCCC-SCCCSSSSTTCCSSCCCHHHHHHTTSCCEEEEECHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEeccCChhHHHHHhcCCeeec-CCccccccchhcCCCChHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCe
Confidence 9999999999987543322100000000 000000011122223345667788889999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhhH
Q 012838 394 LVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLA 436 (455)
Q Consensus 394 ~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~~~~~~~~ 436 (455)
++||+ +|+++||+++++++...++++||+|+|||+.+...+.
T Consensus 284 vvEPs-gA~alAal~~~~~~~~~~g~~VV~I~tGgn~d~~~l~ 325 (514)
T 1tdj_A 284 VAEPS-GALALAGMKKYIALHNIRGERLAHILSGANVNFHGLR 325 (514)
T ss_dssp CCCHH-HHHHHHHHHHHHHHHTCCSCEEEEECCCCCCCTTHHH
T ss_pred EEcHH-HHHHHHHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 99997 8999999998875432368999999999999976554
No 34
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Probab=100.00 E-value=1e-39 Score=335.77 Aligned_cols=305 Identities=12% Similarity=0.012 Sum_probs=217.7
Q ss_pred EEeee--HHHHHHHhhh-hhhhccCCCcc-cchhhcccccccc--CCCCCcccccCCCCCCcCCCcccccCCCceEEEEe
Q 012838 40 NVRMS--GEELLSRLLD-RKWALTSPDSK-IHQIKLFTTTEKH--GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVR 113 (455)
Q Consensus 40 ~~~~~--~e~~~~~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~--g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKr 113 (455)
=.+|+ ||+++++|.+ ..|....++.. +..+. ++++ ++|||+++ ++|+ +. |.+||+||
T Consensus 54 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~g~~~~TPL~~l--~~Ls-~~----------g~~IylK~ 116 (389)
T 1wkv_A 54 GASRIPVGDGCSHTLEELGVFDISVPGEMVFPSPL----DFFERGKPTPLVRS--RLQL-PN----------GVRVWLKL 116 (389)
T ss_dssp TCSEEEBSSSCEEETTTTTTTCCCSCTTCEESSHH----HHHHHSCSCCEEEC--CCCC-ST----------TEEEEEEE
T ss_pred CceeecCcHHHHHHHHHHHhHHHhcCChHHHHHHH----HHhCCCCCCCeEEc--cccc-cC----------CCeEEEEE
Confidence 36788 5999999988 66866555553 32221 2355 68999999 8887 31 57999999
Q ss_pred CCCCCCCcccchhhhHHhhHHH---HHhCCCCEEEecCchhHHHH-----HHHHhCCeEEEEecCCCccccchhhHHHHh
Q 012838 114 DDLLHPLVNGNKARKMDALLPL---LEDHIVTDLVTCGGCQSAHA-----TAVERGLKSHLLLRGEQPQILTGYNLISTI 185 (455)
Q Consensus 114 Edl~~p~~GsnK~Rkl~~~l~~---A~~~G~~~VVt~G~~~sNha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~ 185 (455)
||+| |++||||+|++.+++.. ++++| ++||++++ +||+ +|+++|++|+||||+..+. .+..+|+.
T Consensus 117 E~ln-p~tGS~K~R~a~~~i~~l~~a~~~g-~~Iv~ass--GNhG~AlA~aaa~~Gl~~~ivmp~~~~~---~k~~~~~~ 189 (389)
T 1wkv_A 117 EWYN-PFSLSVKDRPAVEIISRLSRRVEKG-SLVADATS--SNFGVALSAVARLYGYRARVYLPGAAEE---FGKLLPRL 189 (389)
T ss_dssp GGGS-TTTSBTTHHHHHHHHHHHTTTSCTT-CEEEEECC--HHHHHHHHHHHHHTTCEEEEEEETTSCH---HHHHHHHH
T ss_pred cCCC-CCcCChHHHHHHHHHHHHHHHHhcC-CEEEEECC--cHHHHHHHHHHHHcCCeEEEEECCCCCH---HHHHHHHH
Confidence 9997 64699999999999998 77777 77885543 5666 4669999999999987643 25567899
Q ss_pred CCc-EE-EeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhccccccccccccccccCCeEEEecCCCC
Q 012838 186 YGK-VT-YVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG 263 (455)
Q Consensus 186 ~GA-V~-~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~ 263 (455)
+|| |+ .++.+.+++.... |.+ | .+.....|+. ++.
T Consensus 190 ~GAeVv~~v~~~~~~da~~~----a~~---------~----------------------------~~~~g~~~~~--p~~ 226 (389)
T 1wkv_A 190 LGAQVIVDPEAPSTVHLLPR----VMK---------D----------------------------SKNEGFVHVN--QFY 226 (389)
T ss_dssp TTCEEEEETTCSSSGGGHHH----HHH---------H----------------------------HHHHCCEECC--TTT
T ss_pred cCCEEEEEcCCCCHHHHHHH----HHH---------H----------------------------HHccCcEecC--cCC
Confidence 999 88 7874445542221 111 1 1111233433 344
Q ss_pred cHHH-HHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHH
Q 012838 264 DAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFK 342 (455)
Q Consensus 264 np~~-~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~ 342 (455)
||.. ..|+.+++.||++|+...+..||+||+|+|||||++|++.+|++.++.++|||||+.+... . .
T Consensus 227 N~~~~~~~~~t~g~Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~~-l-~---------- 294 (389)
T 1wkv_A 227 NDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDS-I-P---------- 294 (389)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCC-C-T----------
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCCc-c-c----------
Confidence 6654 5568889999999984212479999999999999999999999888999999999987532 1 0
Q ss_pred HHhcccccCCCcCccccccchheeeccC-cEEEeCCHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCe
Q 012838 343 RLFGFLLKKSSLNEVDGEIVHWVERCRP-RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDAD 420 (455)
Q Consensus 343 ~~ig~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~d~ei~~a~r~La~~eGI~veP~ysgaalAgl~~l~~~~-~~~g~~ 420 (455)
|...++.. + . +. .....+ ..+.|+|+|+++++++|+++|||++||+ ||+++|++++++++. +.+ ++
T Consensus 295 ---Gi~~i~~~---~--~-~~-~~~~~dg~~~~Vsd~ea~~a~~~l~~~eGi~~~ps-sa~alaa~~~l~~~g~~~~-~~ 362 (389)
T 1wkv_A 295 ---GIRRVETG---M--L-WI-NMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPS-GGAAVKALAKKAAEGDLEP-GD 362 (389)
T ss_dssp ---TCCCGGGC---C--S-HH-HHSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHH-HHHHHHHHHHHHHTTCSCS-EE
T ss_pred ---cccccCCc---c--h-hh-hhheeccEEEEECHHHHHHHHHHHHHHcCCeEChH-HHHHHHHHHHHHHhcCCCC-CC
Confidence 00000000 0 1 11 112233 6899999999999999999999999997 899999999987653 443 45
Q ss_pred EEEEecC-CCcchhhh
Q 012838 421 VVMLHTG-GTLGMFGL 435 (455)
Q Consensus 421 VV~I~TG-G~~~~~~~ 435 (455)
+|+++|| |..++...
T Consensus 363 vVviltg~G~k~~~~~ 378 (389)
T 1wkv_A 363 YVVVVPDTGFKYLSLV 378 (389)
T ss_dssp EEEEECBBGGGCHHHH
T ss_pred EEEEEcCCCccCHHHH
Confidence 7788998 77777664
No 35
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=100.00 E-value=2e-39 Score=323.39 Aligned_cols=268 Identities=15% Similarity=0.065 Sum_probs=200.8
Q ss_pred ccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC--CEEEecCchhHHH
Q 012838 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV--TDLVTCGGCQSAH 154 (455)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~--~~VVt~G~~~sNh 154 (455)
..++|||+++ ++|+ .+||+|+|++| | +||||+|++.+++.+|++.|. ++||++++ +||
T Consensus 17 ~~~~TPL~~l--~~l~--------------~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~~~~~vv~aSs--GN~ 76 (303)
T 1o58_A 17 LIGSTPIVRL--DSID--------------SRIFLKLEKNN-P-GGSVKDRPALFMILDAEKRGLLKNGIVEPTS--GNM 76 (303)
T ss_dssp HSCCCCEEEC--TTTC--------------TTEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCTTCEEEECS--SHH
T ss_pred ccCCCCeEEC--ccCC--------------ceEEEEecCCC-C-CCChHHHHHHHHHHHHHHcCCCCCCEEEECc--hHH
Confidence 3489999999 6664 47999999997 8 899999999999999998887 67885322 444
Q ss_pred H-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012838 155 A-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 227 (455)
Q Consensus 155 a-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 227 (455)
+ +|+++|++|+||||...+. .+..+++.||| |+.+++. .|++..+. |+++
T Consensus 77 g~a~A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~~---------------- 133 (303)
T 1o58_A 77 GIAIAMIGAKRGHRVILTMPETMSV---ERRKVLKMLGAELVLTPGELGMKGAVEK----ALEI---------------- 133 (303)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHHH----------------
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHHH----------------
Confidence 4 4669999999999987543 36677899999 9998863 24432211 2111
Q ss_pred HHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHH-HHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHH
Q 012838 228 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 306 (455)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~-G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~ 306 (455)
.+.. +.|+ +.++.||.... ||.+++.||++|+ + ..||+||+|+|+|||++|++
T Consensus 134 ---------------------~~~~-~~~~-~~~~~n~~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi~ 187 (303)
T 1o58_A 134 ---------------------SRET-GAHM-LNQFENPYNVYSHQFTTGPEILKQM--D-YQIDAFVAGVGTGGTISGVG 187 (303)
T ss_dssp ---------------------HHHH-CCBC-CCTTTCHHHHHHHHHTHHHHHHHHT--T-TCCSEEEEECSSSHHHHHHH
T ss_pred ---------------------HHhc-CeEe-CCCCCCHHHHHHHHHHHHHHHHHHc--C-CCCCEEEEeeCCcccHHHHH
Confidence 1112 2343 55678998764 7899999999996 3 25999999999999999999
Q ss_pred HHHHhcCCC-ceEEEEeccCChhhHHHh-hHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHH
Q 012838 307 LGAICLGLP-WEVTAIALVDTIDGYKQQ-EKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 384 (455)
Q Consensus 307 ~g~~~~g~~-~~vigVe~~g~~~~~~~~-~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~ 384 (455)
.+++++++. ++|||||+++++...... ....+ +.++.+ ...+.+.....++.+.|+|+|+++++
T Consensus 188 ~~~k~~~p~~~~vigve~~~~~~~~~g~~~~~~~----~gi~~~----------~~~~~~~~~~~d~~~~V~d~e~~~a~ 253 (303)
T 1o58_A 188 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAI----QGIGAG----------FVPKILDRSVIDEVITVEDEEAYEMA 253 (303)
T ss_dssp HHHHHHHGGGSEEEEEEETTSCTTTTCCCCCCCC----TTSCCS----------SCCTTCCGGGCCEEEEECHHHHHHHH
T ss_pred HHHHHhCCCCCEEEEEecCCCccccCCCCCCeec----CcCCCC----------CcCHHHHHHhCCeEEEECHHHHHHHH
Confidence 999988888 999999999874322110 00000 111111 01123445567889999999999999
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012838 385 HRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 429 (455)
Q Consensus 385 r~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~ 429 (455)
++|++++||++||+ +|+++++++++.++ +.++++||+|+|||.
T Consensus 254 ~~l~~~~gi~~eps-sa~alaa~~~~~~~-~~~~~~vv~i~tg~g 296 (303)
T 1o58_A 254 RYLAKKEGLLVGIS-SGANVAAALKVAQK-LGPDARVVTVAPDHA 296 (303)
T ss_dssp HHHHHHHCCCBCHH-HHHHHHHHHHHHHT-SCTTCCEEEEECBBG
T ss_pred HHHHHHcCceEcHH-HHHHHHHHHHHHHH-cCCCCEEEEEECCCC
Confidence 99999999999997 89999999988764 456899999999975
No 36
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=100.00 E-value=1.3e-38 Score=331.65 Aligned_cols=285 Identities=13% Similarity=0.068 Sum_probs=200.5
Q ss_pred ccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC----CEEEe--cCch
Q 012838 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVT--CGGC 150 (455)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~----~~VVt--~G~~ 150 (455)
..++|||+++ ++|+ +.+|. +.+||+|+|++| | +||||||++.+++.+|++.|. ++||+ +||.
T Consensus 105 ~ig~TPLv~l--~~Ls-~~~G~-------~~~v~lK~E~~n-p-tGSfKdR~a~~~i~~a~~~G~l~~g~tVV~aSsGN~ 172 (435)
T 1jbq_A 105 KIGDTPMVRI--NKIG-KKFGL-------KCELLAKCEFFN-A-GGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNT 172 (435)
T ss_dssp GSSCCCEEEC--CSHH-HHTTC-------CSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHH
T ss_pred hCCCCCeEEC--cchh-hHhCC-------CceEEEEECCCC-C-cCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHH
Confidence 3479999999 8887 54432 369999999997 8 799999999999999999886 67884 4544
Q ss_pred hHHHH-HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012838 151 QSAHA-TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 227 (455)
Q Consensus 151 ~sNha-~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 227 (455)
+...| +|+++|++|+||||+..+. .++.+++.||| |+.++.. .|++.+...+ .|
T Consensus 173 G~AlA~aaa~~Gi~~~IvmP~~~s~---~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~-~a------------------- 229 (435)
T 1jbq_A 173 GIGLALAAAVRGYRCIIVMPEKMSS---EKVDVLRALGAEIVRTPTNARFDSPESHVG-VA------------------- 229 (435)
T ss_dssp HHHHHHHHHHHTCEEEEEECSCCCH---HHHHHHHHTTCEEEECCC-------CCHHH-HH-------------------
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCH---HHHHHHHhCCCEEEEecCCCCcchHHHHHH-HH-------------------
Confidence 33333 4669999999999988653 35667899999 9998753 3443211111 11
Q ss_pred HHHhhhhhccccccccccccccccCCeEEEecCCCCcHH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHH
Q 012838 228 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 306 (455)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~-~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~ 306 (455)
.++.+..++.|+++ ++.||. ...||.+++.||++|+ + ..+|+||+|+|||||++|++
T Consensus 230 ------------------~~la~~~~~~~~i~-q~~n~~n~~ag~~t~a~EI~eQl--~-~~~D~vVvpvGtGGtlaGi~ 287 (435)
T 1jbq_A 230 ------------------WRLKNEIPNSHILD-QYRNASNPLAHYDTTADEILQQC--D-GKLDMLVASVGTGGTITGIA 287 (435)
T ss_dssp ------------------HHHHHHSTTEECCC-TTTCTHHHHHHHHTHHHHHHHHH--T-TCCCEEEEECSSSHHHHHHH
T ss_pred ------------------HHHHHhcCCeEEeC-ccCCcccHHHHHHHHHHHHHHHc--C-CCCCEEEEecCCcHhHHHHH
Confidence 11223334566654 334443 2458999999999997 3 36899999999999999999
Q ss_pred HHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhccc-ccCCCcCccccccchheeeccCcEEEeCCHHHHHHHH
Q 012838 307 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFL-LKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 385 (455)
Q Consensus 307 ~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r 385 (455)
.+|++..|.++|||||++++........... . .... ..++....+ ...+.....++.+.|+|+|++++++
T Consensus 288 ~~lk~~~p~vrVigVep~gs~~~~~~~l~~~--~----~~~~~~~gig~~~~---~~~l~~~~vd~~~~Vsd~ea~~a~r 358 (435)
T 1jbq_A 288 RKLKEKCPGCRIIGVDPEGSILAEPEELNQT--E----QTTYEVEGIGYDFI---PTVLDRTVVDKWFKSNDEEAFTFAR 358 (435)
T ss_dssp HHHHHHCTTCEEEEEEETTCSCSSSGGGGCC--S----CCCCSCCSCCCSSC---CTTCCGGGCCEEEEECHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEecCCchhhchhhhhcC--C----CcceeecccccCcc---chhhhhhhccceEEeCHHHHHHHHH
Confidence 9999989999999999998743211100000 0 0000 000111000 0112344567789999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012838 386 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 429 (455)
Q Consensus 386 ~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~ 429 (455)
+|++++||++|| |||++++++++++++ +.++++||+|+||+.
T Consensus 359 ~La~~eGilve~-ssgaalaaa~~~~~~-~~~g~~VV~iltd~g 400 (435)
T 1jbq_A 359 MLIAQEGLLCGG-SAGSTVAVAVKAAQE-LQEGQRCVVILPDSV 400 (435)
T ss_dssp HHHHHSCCCBCH-HHHHHHHHHHHHGGG-CCTTCEEEEEECBBG
T ss_pred HHHHHcCCEEcH-HHHHHHHHHHHHHHH-cCCCCeEEEEEcCCc
Confidence 999999999998 589999999988764 566899999999854
No 37
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Probab=100.00 E-value=3.6e-37 Score=325.49 Aligned_cols=290 Identities=15% Similarity=0.084 Sum_probs=203.0
Q ss_pred cCCCCCcccccCCCCCCc-CCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhC-----CCCEEEe--cCc
Q 012838 78 HGGGPLGGISFLNNTCPF-LGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDH-----IVTDLVT--CGG 149 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~-~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~-----G~~~VVt--~G~ 149 (455)
.|+|||+++ ++|+ +. +| +.+||+|+|++| | +||||||++.+++..+.+. |.++||+ +||
T Consensus 128 ~g~TPLv~l--~~L~-~~~lg--------~~~l~~K~E~~n-P-TGSFKDRga~~~~~~l~~~~~~~~g~~~Vv~aSsGN 194 (486)
T 1e5x_A 128 EGNSNLFWA--ERFG-KQFLG--------MNDLWVKHCGIS-H-TGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGD 194 (486)
T ss_dssp CCCCCEEEC--HHHH-HHHHC--------CSSEEEEETTSS-T-TSBTTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSH
T ss_pred CCCCCcEEC--cccc-hhhcC--------CCcEEEeeccCC-C-ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEcCCCH
Confidence 578999999 8877 43 32 258999999997 8 8999999998887775542 5678885 344
Q ss_pred hhHHHH-HHHHhCCeEEEEecCC-CccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012838 150 CQSAHA-TAVERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 226 (455)
Q Consensus 150 ~~sNha-~Aa~~Gl~~~iv~~~~-~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 226 (455)
++...+ +|+++|++|+||||.. .+. .+..+|+.+|+ |+.|++. |++..+.. ++
T Consensus 195 tG~AlA~~a~~~Gi~~~I~~P~~~~s~---~k~~~~~~~GA~vi~v~g~-~dd~~~~a----~~---------------- 250 (486)
T 1e5x_A 195 TSAALSAYCASAGIPSIVFLPANKISM---AQLVQPIANGAFVLSIDTD-FDGCMKLI----RE---------------- 250 (486)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEGGGCCH---HHHHHHHHTTCEEEEEESC-HHHHHHHH----HH----------------
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCCCH---HHHHHHHhCCCEEEEECCC-HHHHHHHH----HH----------------
Confidence 433222 4669999999999985 543 35567899999 9999875 66533322 11
Q ss_pred HHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHH
Q 012838 227 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 306 (455)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~ 306 (455)
+.+. .+.|++|. .||...+||.++++||++|+ ++..||+||+|+|+||+++|++
T Consensus 251 ---------------------l~~~-~~~~~vns--~N~~~i~gq~t~~~Ei~~ql--~~~~~D~vvvpvG~GG~i~Gi~ 304 (486)
T 1e5x_A 251 ---------------------ITAE-LPIYLANS--LNSLRLEGQKTAAIEILQQF--DWQVPDWVIVPGGNLGNIYAFY 304 (486)
T ss_dssp ---------------------HHHH-SCEEEGGG--SHHHHHHHHTHHHHHHHHHT--TSCCCSEEEEECSSTHHHHHHH
T ss_pred ---------------------HHhc-CCEEEeCC--CCHHHHHHHHHHHHHHHHHc--CCCCCCEEEEeCCcHHHHHHHH
Confidence 1111 23676664 39999999999999999996 4446999999999999999999
Q ss_pred HHHHhc---C---CCceEEEEeccCChhhHH---Hhh---H--hHHHHHHHHhcccccCCCcCccccccchheeeccCcE
Q 012838 307 LGAICL---G---LPWEVTAIALVDTIDGYK---QQE---K--NLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRK 372 (455)
Q Consensus 307 ~g~~~~---g---~~~~vigVe~~g~~~~~~---~~~---~--~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~ 372 (455)
.+|+++ | +.++|+|||++++..... ... . .....+++.++.. .|..+ +..+.+++++.+..
T Consensus 305 ~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~t~a~gi~i~-~p~~~----~~~~~~~~~~~g~~ 379 (486)
T 1e5x_A 305 KGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIG-DPVSI----DRAVYALKKCNGIV 379 (486)
T ss_dssp HHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC-----------------CCC----HHHHHHHHHTTCEE
T ss_pred HHHHHhhhhccCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCCeeCccccCC-CCccH----HHHHHHHhccCCeE
Confidence 999864 4 678999999997644222 110 0 0112222322211 11111 11222344455558
Q ss_pred EEeCCHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCCcchhhhHH
Q 012838 373 FGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFGLAQ 437 (455)
Q Consensus 373 ~~v~d~ei~~a~r~La~~eGI~veP~ysgaalAgl~~l~~~~-~~~g~~VV~I~TGG~~~~~~~~~ 437 (455)
+.|+|+|++++++ +++++||++||+ ||++++++++++++. +.++++||+|+|||.....+...
T Consensus 380 ~~Vsd~e~~~ai~-l~~~eGi~~ePs-sA~alaa~~~~~~~g~~~~~~~vV~i~Tg~~~k~~~~v~ 443 (486)
T 1e5x_A 380 EEATEEELMDAMA-QADSTGMFICPH-TGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKI 443 (486)
T ss_dssp EEECHHHHHHHHH-HHHHTTCCCCHH-HHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGHHHHH
T ss_pred EEECHHHHHHHHH-HHHHCCeEEChh-HHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCccCHHHHH
Confidence 9999999999999 778999999997 899999999987653 55788999999998876555433
No 38
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=100.00 E-value=9.2e-38 Score=333.55 Aligned_cols=280 Identities=14% Similarity=0.060 Sum_probs=205.0
Q ss_pred cCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCC----CEEEecCchhHH
Q 012838 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSA 153 (455)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~----~~VVt~G~~~sN 153 (455)
-++|||+++ ++|+ +.+|. +.+||+|+|++| | +||||+|++.+++.+|++.|. ++||++++ +|
T Consensus 58 ig~TPl~~l--~~l~-~~~g~-------~~~i~~K~E~~~-p-tGS~K~R~a~~~i~~a~~~g~~~~g~~vv~~ss--GN 123 (527)
T 3pc3_A 58 IGCTPLVKL--NNIP-ASDGI-------ECEMYAKCEFLN-P-GGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTS--GN 123 (527)
T ss_dssp SSCCCEEEC--CSHH-HHTTC-------CSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHHTCCCTTCEEEEECS--SH
T ss_pred cCCCCcEEc--chhh-hhcCC-------CcEEEEEeccCC-C-CCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCC--CH
Confidence 478999999 8887 54442 479999999997 7 799999999999999999998 78886422 45
Q ss_pred HH-----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012838 154 HA-----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 226 (455)
Q Consensus 154 ha-----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 226 (455)
|+ +|+.+|++|+||||...+. .+..+++.||| |+.++.. .|++.+.+.+ .|+
T Consensus 124 ~g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~-~a~----------------- 182 (527)
T 3pc3_A 124 TGIGLAMACAVKGYKCIIVMPEKMSN---EKVSALRTLGAKIIRTPTEAAYDSPEGLIY-VAQ----------------- 182 (527)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECTTSCTTSTTSHHH-HHH-----------------
T ss_pred HHHHHHHHHHHhCCeEEEEEcCCCCH---HHHHHHHHCCCEEEEeCCCCCcccHHHHHH-HHH-----------------
Confidence 55 4669999999999987653 35677899999 9999863 3543221211 111
Q ss_pred HHHHhhhhhccccccccccccccccCCeEEEecCCCCcHH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHH
Q 012838 227 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 305 (455)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~-~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl 305 (455)
++.+..+..|+ +.++.||. ...||.+++.||++|+ + ..||+||+|+|||||++|+
T Consensus 183 --------------------~~~~~~~~~~~-~~~~~n~~n~~~g~~t~~~Ei~~q~--~-~~~d~vv~~vG~GG~~~G~ 238 (527)
T 3pc3_A 183 --------------------QLQRETPNSIV-LDQYRNAGNPLAHYDGTAAEILWQL--D-NKVDMIVVSAGTAGTISGI 238 (527)
T ss_dssp --------------------HHHHHSSSEEC-CCTTTCTHHHHHHHHTHHHHHHHHT--T-TCCSEEEEECSSSHHHHHH
T ss_pred --------------------HHHHhCCCcEe-cCCCCCcchHHHHHHHHHHHHHHhc--C-CCCCEEEEecCccHHHHHH
Confidence 11222334444 34556764 5679999999999996 3 3699999999999999999
Q ss_pred HHHHHhcCCCceEEEEeccCChhhHHHhhHhHH--HHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHH
Q 012838 306 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLI--SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 383 (455)
Q Consensus 306 ~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~--~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a 383 (455)
+.++++..|.++|||||++++............ ....+.++. +.+ ...+.+...++.+.|+|+|++++
T Consensus 239 ~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~~~~~~gi~~-------~~~---p~~~~~~~~d~~~~V~d~e~~~a 308 (527)
T 3pc3_A 239 GRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGY-------DFP---PTVFDDTVVDVWTKIGDSDCFPM 308 (527)
T ss_dssp HHHHHHHCTTSEEEEEEETTCCCSSSGGGGCCSCCCCSCCSCCC-------SSC---CTTCCGGGCCEEEEECGGGTHHH
T ss_pred HHHHHHhCCCCEEEEEecCCcccccchhhcCCCCCceeccccCC-------CCC---CcccchhhCcEEEEECHHHHHHH
Confidence 999999899999999999997532111000000 000001111 111 11234567788999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCC
Q 012838 384 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 428 (455)
Q Consensus 384 ~r~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG 428 (455)
+++|+++|||++||+ +|+++||+++++++ +.++++||+|++++
T Consensus 309 ~r~l~~~eGi~~~ps-sa~alaaal~~~~~-~~~~~~vv~i~~d~ 351 (527)
T 3pc3_A 309 SRRLNAEEGLLCGGS-SGGAMHAALEHARK-LKKGQRCVVILPDG 351 (527)
T ss_dssp HHHHHHHHCCCBCHH-HHHHHHHHHHHHTT-CCTTCEEEEEECBB
T ss_pred HHHHHHHcCceEcHH-HHHHHHHHHHHHHH-cCCCCeEEEEEcCc
Confidence 999999999999996 89999999998764 56789999999874
No 39
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=99.97 E-value=2.2e-31 Score=277.29 Aligned_cols=282 Identities=10% Similarity=-0.065 Sum_probs=184.1
Q ss_pred ccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhh---HHHHHhCCCCEEEe--cCchh
Q 012838 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDAL---LPLLEDHIVTDLVT--CGGCQ 151 (455)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~---l~~A~~~G~~~VVt--~G~~~ 151 (455)
.+++|||+++ + .+||+ +|++++| +||||||++.++ +..|++.+..+||+ +|+++
T Consensus 80 ~~~~TPL~~l--~-----------------~~i~~-~E~~~~p-TgSfKdr~a~~l~~~l~~a~~~~~~~Iv~atsGNtG 138 (428)
T 1vb3_A 80 FAFPAPVANV--E-----------------SDVGC-LELFHGP-TLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTG 138 (428)
T ss_dssp CCSCCCEEEE--E-----------------TTEEE-EECCCST-TSBTHHHHHHHHHHHHHHHTTTCCEEEEEECSSSHH
T ss_pred hCCCCCeEEe--c-----------------CCeEE-eeccCCC-cccHHHHHHHHHHHHHHHHHhcCCCEEEecCCchHH
Confidence 3589999998 2 26999 8999658 899999999877 45564444566774 45555
Q ss_pred HHHH--HHHHhCCeEEEEecCC-CccccchhhHHHHhCCc-E--EEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhh
Q 012838 152 SAHA--TAVERGLKSHLLLRGE-QPQILTGYNLISTIYGK-V--TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIF 225 (455)
Q Consensus 152 sNha--~Aa~~Gl~~~iv~~~~-~~~~~~~~~~~~~~~GA-V--~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~ 225 (455)
.+.+ +|+++|++|+||||.. .+.. +..+|+.+|| | +.|+++ +++..+..+ +++. +|.
T Consensus 139 ~A~A~~~a~~~G~~~~I~~P~~~~s~~---k~~~m~~~GA~V~~v~v~g~-~d~~~~~~~----~~~~-----d~~---- 201 (428)
T 1vb3_A 139 AAVAHAFYGLPNVKVVILYPRGKISPL---QEKLFCTLGGNIETVAIDGD-FDACQALVK----QAFD-----DEE---- 201 (428)
T ss_dssp HHHHHHTTTCTTEEEEEEEETTCSCHH---HHHHHHSCCTTEEEEEEESC-HHHHHHHHH----HGGG-----CHH----
T ss_pred HHHHHHHhhhcCCeEEEEECCCCCCHH---HHHHHHhcCCeEEEEEeCCC-HHHHHHHHH----HHHh-----chh----
Confidence 4433 3458999999999984 5433 4457899998 8 777764 665433322 2111 110
Q ss_pred HHHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeCCCcchHHH
Q 012838 226 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVG 304 (455)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~-~g~~~pD~vvvpvGtGgt~~G 304 (455)
+.... ..+. .+..||....|+.+++.||++|+. .+ ..||+||+|+|+||+++|
T Consensus 202 ----------------------~~~~~-~~~~--~n~~n~~~~~gq~t~~~Ei~~ql~~~g-~~~d~vvvpvG~GG~i~G 255 (428)
T 1vb3_A 202 ----------------------LKVAL-GLNS--ANSINISRLLAQICYYFEAVAQLPQET-RNQLVVSVPSGNFGDLTA 255 (428)
T ss_dssp ----------------------HHHHH-TEEC--CSTTSHHHHHHTTHHHHHHHTTSCTTT-TTSEEEEEECSSCHHHHH
T ss_pred ----------------------hhhhc-Ceee--CCCCCHHHHHHHHHHHHHHHHHccccc-CCCCEEEEeCCchHHHHH
Confidence 00011 2222 234689999999999999999972 11 269999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeccCChh--hHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeec-----cCcEEEeCC
Q 012838 305 LGLGAICLGLPWEVTAIALVDTID--GYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERC-----RPRKFGNVF 377 (455)
Q Consensus 305 l~~g~~~~g~~~~vigVe~~g~~~--~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~v~d 377 (455)
++.+++...|.++||||+..++.. .+....... .....++..+ +....+...+..+.+.++. .+..+.|+|
T Consensus 256 ~~~a~~~g~p~~kii~a~~~~~~l~~~~~~G~~~~-~~~~~tis~g-~~i~~p~~~~~~~~l~~~~~~~~~~~~~~~Vsd 333 (428)
T 1vb3_A 256 GLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSP-KATQATLSNA-MDVSQPNNWPRVEELFRRKIWQLKELGYAAVDD 333 (428)
T ss_dssp HHHHHHTTCCCSEEEEEECSCCHHHHHHHHSCCCC-CCCCCCSSGG-GCCSSCTTHHHHHHHHHHTTCCGGGSEEEECCH
T ss_pred HHHHHHcCCCCCeEEeecCCChHHHHHHHcCCccc-CCCCCcccch-hcCCCCccHHHHHHHHhcchhhhhCcEEEEECH
Confidence 999998544556999998765321 111110000 0000011110 0000000001111223333 567899999
Q ss_pred HHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCc
Q 012838 378 EGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 430 (455)
Q Consensus 378 ~ei~~a~r~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~~ 430 (455)
+|+++++++| +++|+++||. ||+++++++++.+ ++++||+++||++.
T Consensus 334 ~e~~~a~~~l-~~eGi~~~p~-sa~a~aa~~~~~~----~~~~vV~i~tg~~~ 380 (428)
T 1vb3_A 334 ETTQQTMREL-KELGYTSEPH-AAVAYRALRDQLN----PGEYGLFLGTAHPA 380 (428)
T ss_dssp HHHHHHHHHH-HHTTCCCCHH-HHHHHHHHHTTCC----TTCEEEEEECBCGG
T ss_pred HHHHHHHHHH-HHCCeEECch-HHHHHHHHHHHhC----CCCcEEEEeCCCCC
Confidence 9999999999 9999999996 8999999987643 47899999999754
No 40
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1
Probab=99.94 E-value=8.9e-26 Score=239.15 Aligned_cols=287 Identities=13% Similarity=0.019 Sum_probs=180.5
Q ss_pred cCCCCCcc--cccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhH---HHHH-hCC---------CC
Q 012838 78 HGGGPLGG--ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALL---PLLE-DHI---------VT 142 (455)
Q Consensus 78 ~g~TPL~~--~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l---~~A~-~~G---------~~ 142 (455)
.+.|||++ + +++ .++|+|.|.+| | +||||||.+.+++ .+++ +.| ..
T Consensus 94 ~g~TPLv~~~l--~~l---------------~~l~~K~e~~n-P-TgSFKDrga~~~~~~~~~a~~~~g~~~~~~~~~~~ 154 (514)
T 1kl7_A 94 DEVTPLVQNVT--GDK---------------ENLHILELFHG-P-TYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQI 154 (514)
T ss_dssp TTSSCEECCTT--CSS---------------SCEEEEECCCS-T-TSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCE
T ss_pred CCCCceeehhc--ccc---------------cchhhhhhccC-C-CCcHHHHHHHHHHHHHHHHHHhcCCccccccCCCC
Confidence 58899998 7 332 26999999996 8 8999999998884 4442 334 35
Q ss_pred EEE--ecCchhHHHHHH--HHhCCeEEEEecCC-CccccchhhHHH-H--hCCc-EEEeCCCchhhHHHHHHHHhhhhhc
Q 012838 143 DLV--TCGGCQSAHATA--VERGLKSHLLLRGE-QPQILTGYNLIS-T--IYGK-VTYVPRTHYAHRIEMLKSYANLVAG 213 (455)
Q Consensus 143 ~VV--t~G~~~sNha~A--a~~Gl~~~iv~~~~-~~~~~~~~~~~~-~--~~GA-V~~v~~~~~~~~~~~~~~~A~~la~ 213 (455)
+|| |+||+++++++| ++.|++|+||||.. .+..+ ..+| + .+|+ |+.|+++ |++..+.. .+++.
T Consensus 155 ~Iv~ATSGNtG~AA~~a~a~~~Gi~~~I~~P~~~~S~~q---~~qm~~~~g~~~~vv~v~g~-fdda~~~v----k~l~~ 226 (514)
T 1kl7_A 155 TVVGATSGDTGSAAIYGLRGKKDVSVFILYPTGRISPIQ---EEQMTTVPDENVQTLSVTGT-FDNCQDIV----KAIFG 226 (514)
T ss_dssp EEEEECSSSHHHHHHHHHTTCTTEEEEEEEETTSSCHHH---HHHHHHCCCTTEEEEEESSC-HHHHHHHH----HHHHH
T ss_pred EEEECCCCcHHHHHHHHHHhhcCCeEEEEEcCCCCCHHH---HHHHhhhcCCCEEEEEcCCC-HHHHHHHH----HHHHh
Confidence 666 478877665555 69999999999986 54432 2334 3 3445 6777764 77544332 22221
Q ss_pred CCCCccchhhhhHHHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCC--CCCCE
Q 012838 214 NNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGR--KRAIK 291 (455)
Q Consensus 214 ~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~--~~pD~ 291 (455)
+.+. ... ...+.+ ...||..++|+++.+.|+.+|+. ++ ..||+
T Consensus 227 ~~~~-------------------------------~~~-~~~~~~--Ns~N~~ri~gQ~tyy~e~~~ql~-~~~~~~~d~ 271 (514)
T 1kl7_A 227 DKEF-------------------------------NSK-HNVGAV--NSINWARILAQMTYYFYSFFQAT-NGKDSKKVK 271 (514)
T ss_dssp CSSC-------------------------------C---CCBCCC--CSCCHHHHHHHHHHHHHHHHHHH-SSSSCCCEE
T ss_pred cccc-------------------------------ccc-ceeEee--CCCCHhHHhhHHHHHHHHHHHHh-hhcCCCCcE
Confidence 1110 000 111222 23478889999999999999972 22 36899
Q ss_pred EEEeCCCcchHHHHHHHHHhcC-CCceEEEEeccCChh--hHHHhhHhHHHHHHHHhcccccCCCcCcccccc-chhee-
Q 012838 292 FVVDAGTGTTAVGLGLGAICLG-LPWEVTAIALVDTID--GYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEI-VHWVE- 366 (455)
Q Consensus 292 vvvpvGtGgt~~Gl~~g~~~~g-~~~~vigVe~~g~~~--~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~-~~l~~- 366 (455)
||||+|+||++.|.+.+ +++| |.+|||+||+++++- .+.............+++.+ +.+..+...+.. +.+.+
T Consensus 272 ~vvP~GngG~i~a~~~a-k~~G~p~~rli~v~~~n~~l~~~~~~G~~~~~~~~~~Tis~a-mdi~~psn~er~l~~l~~~ 349 (514)
T 1kl7_A 272 FVVPSGNFGDILAGYFA-KKMGLPIEKLAIATNENDILDRFLKSGLYERSDKVAATLSPA-MDILISSNFERLLWYLARE 349 (514)
T ss_dssp EEEECSSSHHHHHHHHH-HHHTCCCCCEEEEECSCCHHHHHHHHSEEECCSSCCCCSCGG-GCCSSCTTHHHHHHHHHHH
T ss_pred EEEECCchHHHHHHHHH-HHcCCCCCEEEEEeCCcchHHHHHhcCCccCCCCCCCeechh-hhcCCCCcHHHHHHHHhcc
Confidence 99999999999999864 4465 457999999988432 11111000000000011100 000000000000 01111
Q ss_pred ----------------------eccC---------------cEEEeCCHHHHHHHHHHHHHh----CCcccccchHHHHH
Q 012838 367 ----------------------RCRP---------------RKFGNVFEGEIEACHRIAQLT----GILVDPVYTLAAWE 405 (455)
Q Consensus 367 ----------------------~~~~---------------~~~~v~d~ei~~a~r~La~~e----GI~veP~ysgaalA 405 (455)
...+ ..+.|+|+|++++++++++++ |+++||. ||++++
T Consensus 350 ~~~~~~~~~d~~~v~~~~~~l~~~gg~~~~~~~~~~~~~~f~~~~Vsd~e~~~ai~~l~~~~~~~~G~~~ep~-tAv~~a 428 (514)
T 1kl7_A 350 YLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHYILDPH-TAVGVC 428 (514)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHCCSSTTCCCCHH-HHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHhcCCeeccHHHHHHhhcCceEEEECHHHHHHHHHHHHHhCCCCCCEEEccc-HHHHHH
Confidence 0111 367899999999999999999 9999996 889999
Q ss_pred HHHHHhhhcCCCCCeEEEEecCCC
Q 012838 406 MATLLSDEKLKQDADVVMLHTGGT 429 (455)
Q Consensus 406 gl~~l~~~~~~~g~~VV~I~TGG~ 429 (455)
+++++.++.+.++++||++.||.-
T Consensus 429 a~~~~~~~g~~~~~~vV~l~Ta~~ 452 (514)
T 1kl7_A 429 ATERLIAKDNDKSIQYISLSTAHP 452 (514)
T ss_dssp HHHHHHHHHCCTTSEEEEEECBCG
T ss_pred HHHHHHHhccCCCCcEEEEECCch
Confidence 999887653445789999999844
No 41
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}
Probab=99.93 E-value=9.2e-26 Score=236.38 Aligned_cols=269 Identities=12% Similarity=0.029 Sum_probs=170.4
Q ss_pred ceEEEEeCCCCCCCcccchhhhHHhh---HHHH-HhCCCC-EEEe--cCchhHHH--HHHHHhCCeEEEEecCC-Ccccc
Q 012838 107 RCFYVVRDDLLHPLVNGNKARKMDAL---LPLL-EDHIVT-DLVT--CGGCQSAH--ATAVERGLKSHLLLRGE-QPQIL 176 (455)
Q Consensus 107 ~~lylKrEdl~~p~~GsnK~Rkl~~~---l~~A-~~~G~~-~VVt--~G~~~sNh--a~Aa~~Gl~~~iv~~~~-~~~~~ 176 (455)
.++|+|.|.+| | +||||||.+.++ +..+ ++.|.+ +||+ +||+++.. ++|.++|++|+||||.. .+..
T Consensus 101 ~~~~~kee~~~-P-TgSFKDRga~~~~~~l~~a~~~~g~~~~Vv~ASSGNtG~aa~aa~a~~~Gi~~~I~~P~~~~s~~- 177 (468)
T 4f4f_A 101 ANEFVLELFHG-P-TLAFKDVAMQLLARMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPV- 177 (468)
T ss_dssp TTEEEEECCCS-T-TSBTHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHTTCSSEEEEEEEETTCSCHH-
T ss_pred CCeehHHhccC-C-cccHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCchHHHHHHHHHHhccCCcEEEEeCCCCCCHH-
Confidence 36999999996 8 899999999888 7776 366764 6774 45544222 23458999999999987 6544
Q ss_pred chhhHHHHhCC-c-E--EEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhccccccccccccccccC
Q 012838 177 TGYNLISTIYG-K-V--TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCR 252 (455)
Q Consensus 177 ~~~~~~~~~~G-A-V--~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 252 (455)
+..+|+.+| + | +.|++ .|++..+..+ +++.+ ..+ ...
T Consensus 178 --k~~~~~~~gganV~vv~v~g-~fdda~~~~k----~~~~d------------~~~-------------------~~~- 218 (468)
T 4f4f_A 178 --QQRQMTSSGFSNVHALSIEG-NFDDCQNLVK----GMFND------------LEF-------------------CDA- 218 (468)
T ss_dssp --HHHHHHCSCCTTEEEEEEES-CHHHHHHHHH----HHHHC------------HHH-------------------HHH-
T ss_pred --HHHHHHhcCCCeEEEeecCC-CHHHHHHHHH----HHHhc------------ccc-------------------ccc-
Confidence 335688886 4 5 56665 4776554432 22110 000 000
Q ss_pred CeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCE---EEEeCCCcchHHHHHHHHHhcCC-CceEEEEeccCChh
Q 012838 253 KKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIK---FVVDAGTGTTAVGLGLGAICLGL-PWEVTAIALVDTID 328 (455)
Q Consensus 253 ~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~---vvvpvGtGgt~~Gl~~g~~~~g~-~~~vigVe~~g~~~ 328 (455)
...+.++. .||..++|+.+++.||++|+ ..||. ||||+|+||+++|++.+ +.+|. ..|||+| +.+...
T Consensus 219 ~~~~~vns--in~~ri~GQ~T~~~Ei~~ql----~~~d~~v~vvVPvG~GG~i~g~~~A-k~mGlPi~kli~a-~n~~~~ 290 (468)
T 4f4f_A 219 LSLSGVNS--INWARIMPQVVYYFTAALSL----GAPDRAVSFTVPTGNFGDIFAGYVA-KRMGLPIEQLIIA-TNDNDI 290 (468)
T ss_dssp HTEEECCT--TSHHHHGGGHHHHHHHHHHT----TTTSSCEEEEEECSSSHHHHHHHHH-HHHTCCEEEEEEE-ECSCCH
T ss_pred cceEeCCC--CCHHHHHhHHHHHHHHHHhc----ccCCCCeEEEEEeCCcHHHHHHHHH-HHhCCCCCEEEEE-eCCchH
Confidence 12344443 48999999999999999996 26788 99999999999999988 44775 4599999 555433
Q ss_pred hHHHhhHh-H-HHHHHHHhcccccCCCcCc-cccc-----------------------cchh----eeec--cCcEEEeC
Q 012838 329 GYKQQEKN-L-ISEFKRLFGFLLKKSSLNE-VDGE-----------------------IVHW----VERC--RPRKFGNV 376 (455)
Q Consensus 329 ~~~~~~~~-l-~~~~~~~ig~~~~~~~~~~-~~~~-----------------------~~~l----~~~~--~~~~~~v~ 376 (455)
.......+ . ......++..+ +.+..+. .... .+.+ .+.. ....+.|+
T Consensus 291 l~~~l~~G~~~~~~~~~Tia~s-mdi~~~sN~erl~~~l~~~d~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Vs 369 (468)
T 4f4f_A 291 LSRTLESGAYEMRGVAQTTSPS-MDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSAGRST 369 (468)
T ss_dssp HHHHHHHSEEECCCCCCCSCGG-GCCSSCTTHHHHHHHHTTTCHHHHHHHHHHHHHHSEEECCHHHHHHHHHHEEEEECC
T ss_pred HHHHHHcCCceecCCcceeCch-hhcCccchHHHHHHHHhccCHHHHHHHHHHHHhcCCeeccHHHHHHHhhcceEEEEC
Confidence 22111000 0 00000011100 0000000 0000 0000 0000 01257899
Q ss_pred CHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcc
Q 012838 377 FEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLG 431 (455)
Q Consensus 377 d~ei~~a~r~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~~~ 431 (455)
|+|+.++|+++++++|+++||. +|.++++++++. .++.++|++.||...-
T Consensus 370 D~ei~~ai~~l~~~~g~~vEP~-~Ava~aa~~~~~----~~~~~~V~l~Ta~~~K 419 (468)
T 4f4f_A 370 VDETAATIESVLSKDGYLLDPH-SAIGVKVAREKA----SGTAPMVVLATAHPAK 419 (468)
T ss_dssp HHHHHHHHHHHHHHHSCCCCHH-HHHHHHHHHHHC----CSSSCEEEEECBCGGG
T ss_pred HHHHHHHHHHHHHHCCEEECHh-HHHHHHHHHHHh----CCCCeEEEEecCCccc
Confidence 9999999999999999999996 789999998863 2478899999995543
No 42
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=99.92 E-value=5.6e-25 Score=230.76 Aligned_cols=277 Identities=13% Similarity=0.072 Sum_probs=175.1
Q ss_pred eEEEEeCCCCCCCcccchhhhHHhh---HHHHH-hCCCCE-EE--ecCchhHHHHHHH--HhCCeEEEEecCC-Cccccc
Q 012838 108 CFYVVRDDLLHPLVNGNKARKMDAL---LPLLE-DHIVTD-LV--TCGGCQSAHATAV--ERGLKSHLLLRGE-QPQILT 177 (455)
Q Consensus 108 ~lylKrEdl~~p~~GsnK~Rkl~~~---l~~A~-~~G~~~-VV--t~G~~~sNha~Aa--~~Gl~~~iv~~~~-~~~~~~ 177 (455)
++|+|.|.+| | +||||||.+.++ +..+. +.|.+. || |+||++++.++|+ +.|++|+|+||.. .+..
T Consensus 115 ~l~vkee~~~-P-TgSFKDRga~~~~~ll~~a~~~~g~~~~Vv~ASSGNtG~Aaa~a~~~~~Gi~~~I~~P~~~~s~~-- 190 (487)
T 3v7n_A 115 PVSLLELSNG-P-TLAFKDMAMQLLGNLFEYTLAKHGETLNILGATSGDTGSAAEYAMRGKEGVRVFMLSPHKKMSAF-- 190 (487)
T ss_dssp EEEEEECCCS-T-TSBTHHHHHHHHHHHHHHHHHTTTCCEEEEEECSSHHHHHHHHHHTTCTTEEEEEEEETTCSCHH--
T ss_pred ceeHHhhccC-C-cCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhccCCeEEEEECCCCCCHH--
Confidence 3999999996 8 899999999888 78774 567654 66 3566665555555 7999999999986 5543
Q ss_pred hhhHHHHhCCc----EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhccccccccccccccccCC
Q 012838 178 GYNLISTIYGK----VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRK 253 (455)
Q Consensus 178 ~~~~~~~~~GA----V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 253 (455)
+..+|+.||+ |+.|++. |++..+..++ ++.+ ..+ ... .
T Consensus 191 -k~~qm~~~Ga~nv~vv~v~G~-fDda~~~vk~----~~~d------------~~~-------------------~~~-~ 232 (487)
T 3v7n_A 191 -QTAQMYSLQDPNIFNLAVNGV-FDDCQDIVKA----VSND------------HAF-------------------KAQ-Q 232 (487)
T ss_dssp -HHHHHHTCCCTTEEEEEEESC-HHHHHHHHHH----HHTC------------HHH-------------------HHH-T
T ss_pred -HHHHHHhcCCCcEEEEEECCC-HHHHHHHHHH----hhhc------------hHH-------------------Hhh-c
Confidence 4466899994 5567664 7765544322 2110 000 001 1
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHHHhcCCC-ceEEEEeccCChh--hH
Q 012838 254 KVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLP-WEVTAIALVDTID--GY 330 (455)
Q Consensus 254 ~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~~~~g~~-~~vigVe~~g~~~--~~ 330 (455)
..+.+|. .||..++|+++.+.|+..|+...++.||.|+||+|+||+++|++.+.+ +|.. +|||+|++++++- .+
T Consensus 233 ~l~~vns--~Np~ri~gQ~tyy~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~~-mGlp~~rli~a~~~n~~l~~~~ 309 (487)
T 3v7n_A 233 KIGTVNS--INWARVVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARM-MGLPIEKLVVATNENDVLDEFF 309 (487)
T ss_dssp TEECCST--TCHHHHHHHHHHHHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHHH-TTCCEEEEEEECTTCHHHHHHH
T ss_pred CeeeeCC--CCHHHHHhHHHHHHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHH-cCCCCceEEEEeCCCcHHHHHH
Confidence 2333433 478899999988888888763234579999999999999999998755 7754 5999999998321 12
Q ss_pred HHhhH---hHHHHH---HHHhcccccCCCcCcc---------------------------cccc--chheeeccCcEEEe
Q 012838 331 KQQEK---NLISEF---KRLFGFLLKKSSLNEV---------------------------DGEI--VHWVERCRPRKFGN 375 (455)
Q Consensus 331 ~~~~~---~l~~~~---~~~ig~~~~~~~~~~~---------------------------~~~~--~~l~~~~~~~~~~v 375 (455)
..+.. .....+ +..+... .|.++... .... +...+ .....+.|
T Consensus 310 ~~G~~~~~~~~~Ti~t~s~smdI~-~psn~er~l~~l~~~d~~~~~~~m~~l~~~g~~~l~~~~~~~~~~~-~~~~~~~V 387 (487)
T 3v7n_A 310 RTGAYRVRSAQDTYHTSSPSMDIS-KASNFERFVFDLLGRDPARVVQLFRDVEQKGGFDLAASGDFARVAE-FGFVSGRS 387 (487)
T ss_dssp HHSEEEC-------------------CHHHHHHHHHHTTTCHHHHHHHHHHHHHHSEEETTTTTCTHHHHH-TTEEEECC
T ss_pred HcCCcccCCCCCccccCCchhccC-CCccHHHHHHHHhCCCHHHHHHHHHHHHhcCCeecccchhHHHHHh-hcceEEEE
Confidence 11100 011111 1111000 00000000 0000 00011 11234578
Q ss_pred CCHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhhhH
Q 012838 376 VFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLA 436 (455)
Q Consensus 376 ~d~ei~~a~r~La~~eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TG-G~~~~~~~~ 436 (455)
+|+|++++++++++++|+++||. ||++++++.++. .++.++|++.|| +........
T Consensus 388 sDee~~~air~l~~~~G~l~dPh-tAva~aaa~~~~----~~~~~~V~l~Ta~p~Kf~~~v~ 444 (487)
T 3v7n_A 388 THADRIATIRDVFERYRTMIDTH-TADGLKVAREHL----RPGVPMVVLETAQPIKFGESIR 444 (487)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCHH-HHHHHHHHTTSC----CTTSCEEEEECBCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHHcCEEEChh-HHHHHHHHHHhh----CCCCcEEEEecCCccccHHHHH
Confidence 99999999999999999999995 789999987653 247789999999 666554433
No 43
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=32.70 E-value=2.6e+02 Score=25.83 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=7.9
Q ss_pred CCCCEEEecCchh
Q 012838 139 HIVTDLVTCGGCQ 151 (455)
Q Consensus 139 ~G~~~VVt~G~~~ 151 (455)
.|+..|||.|+.+
T Consensus 6 ~gKvalVTGas~G 18 (254)
T 4fn4_A 6 KNKVVIVTGAGSG 18 (254)
T ss_dssp TTCEEEEETTTSH
T ss_pred CCCEEEEeCCCCH
Confidence 3666677765544
No 44
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=29.44 E-value=3.7e+02 Score=25.50 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=25.7
Q ss_pred CCCEEEEeCCCcchHHHHHHHHHhcCCCceEEEEeccCC
Q 012838 288 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDT 326 (455)
Q Consensus 288 ~pD~vvvpvGtGgt~~Gl~~g~~~~g~~~~vigVe~~g~ 326 (455)
.++..|+..++|-+..+++.+.+.+| ++.+.|.+...
T Consensus 71 ~~~~~vv~aSsGN~g~alA~aa~~~G--~~~~iv~p~~~ 107 (325)
T 3dwg_A 71 RPGATILEPTSGNTGISLAMAARLKG--YRLICVMPENT 107 (325)
T ss_dssp CTTCEEEEECSSHHHHHHHHHHHHHT--CEEEEEEESSS
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHcC--CcEEEEECCCC
Confidence 34444555678999999998888776 45566667664
No 45
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=28.99 E-value=88 Score=28.45 Aligned_cols=35 Identities=11% Similarity=-0.136 Sum_probs=28.8
Q ss_pred CCCCEEEEeCCCcchHHHHHHHHHhcCC-CceEEEEec
Q 012838 287 KRAIKFVVDAGTGTTAVGLGLGAICLGL-PWEVTAIAL 323 (455)
Q Consensus 287 ~~pD~vvvpvGtGgt~~Gl~~g~~~~g~-~~~vigVe~ 323 (455)
+.||.||++ +...+.|+..++++.|. ++.|+|++.
T Consensus 194 ~~~~ai~~~--~d~~a~g~~~al~~~g~~di~vig~d~ 229 (293)
T 3l6u_A 194 IPFDAVYCH--NDDIAMGVLEALKKAKISGKIVVGIDG 229 (293)
T ss_dssp CCCSEEEES--SHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred CCCCEEEEC--CchHHHHHHHHHHhCCCCCeEEEEecC
Confidence 578998864 66778899999999887 888999874
No 46
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=27.47 E-value=71 Score=28.40 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=41.7
Q ss_pred eCCHHHHHHHHHHHHHhCCccc-ccchH---HHHHHHHHHhhhcCCCCCeEEEEecCCCcchh
Q 012838 375 NVFEGEIEACHRIAQLTGILVD-PVYTL---AAWEMATLLSDEKLKQDADVVMLHTGGTLGMF 433 (455)
Q Consensus 375 v~d~ei~~a~r~La~~eGI~ve-P~ysg---aalAgl~~l~~~~~~~g~~VV~I~TGG~~~~~ 433 (455)
..++++.+...++.+..+|++. |.|-+ ..+-.+++.+......+++++++.|||..+-.
T Consensus 71 ~~~~~~~~~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~G~~~~~ 133 (191)
T 3k1y_A 71 VHTTKLEEITSALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATAGSARHS 133 (191)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEESSSTTT
T ss_pred CCCHHHHHHHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeCCCcchh
Confidence 3567888889999888888776 77754 44555555543334568999999998876654
No 47
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=25.62 E-value=1.9e+02 Score=26.83 Aligned_cols=89 Identities=12% Similarity=-0.002 Sum_probs=45.6
Q ss_pred eEEEecCCCCcHH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHHHhcCCCceEEEEeccCChh---h
Q 012838 254 KVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTID---G 329 (455)
Q Consensus 254 ~~y~ip~g~~np~-~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~~~~g~~~~vigVe~~g~~~---~ 329 (455)
+.+++|....++. ........+-+..++. . .++ -++++|+|.|+..++..+......-.+.-|+..|... .
T Consensus 28 ~v~Vvp~~~~~~~~~~~~lg~~aA~~L~~~-l---~~~-~vIGv~wG~Tl~~v~~~l~~~~~~~~~~~V~l~Gg~~~~~~ 102 (266)
T 3efb_A 28 DVVVVSGNDEDEETQLAMMGLHGAQLLDRL-L---EPG-DIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLE 102 (266)
T ss_dssp EEEEECCCSCCHHHHHHHHHHHHHHHHHHH-C---CTT-CEEEECCSHHHHHHHHTCCCCSSCCCCEEEESBCBCTTSSC
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHHHHh-C---CCC-CEEEEcccHHHHHHHHhcCccCCCCCeEEEEcCCCCCCCCc
Confidence 5678886433332 2222222344444443 1 223 3678999999999887764321112455577666521 1
Q ss_pred HHHhhHhHHHHHHHHhcc
Q 012838 330 YKQQEKNLISEFKRLFGF 347 (455)
Q Consensus 330 ~~~~~~~l~~~~~~~ig~ 347 (455)
.......++..+++.++.
T Consensus 103 ~~~~~n~i~~~lA~~~~~ 120 (266)
T 3efb_A 103 SRYHVNTLTYSAAAKLKG 120 (266)
T ss_dssp GGGCHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHHhCC
Confidence 111223455666666654
No 48
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.48 E-value=1.3e+02 Score=27.32 Aligned_cols=34 Identities=6% Similarity=-0.103 Sum_probs=28.5
Q ss_pred CCCEEEEeCCCcchHHHHHHHHHhcCC-CceEEEEec
Q 012838 288 RAIKFVVDAGTGTTAVGLGLGAICLGL-PWEVTAIAL 323 (455)
Q Consensus 288 ~pD~vvvpvGtGgt~~Gl~~g~~~~g~-~~~vigVe~ 323 (455)
.||.||+ .+...+.|+..++++.|. ++.|+|++.
T Consensus 191 ~~~ai~~--~~d~~a~g~~~al~~~g~~di~vvg~d~ 225 (291)
T 3l49_A 191 DVGAIWA--CWDVPMIGATQALQAAGRTDIRTYGVDG 225 (291)
T ss_dssp SCCEEEE--SSHHHHHHHHHHHHHTTCCSCEEEEEEC
T ss_pred CcCEEEE--CCCchHHHHHHHHHHcCCCCeEEEEecC
Confidence 7899975 466789999999999887 889999864
No 49
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=25.20 E-value=1.2e+02 Score=27.77 Aligned_cols=36 Identities=14% Similarity=-0.061 Sum_probs=28.7
Q ss_pred CCCCEEEEeCCCcchHHHHHHHHHhcCC----CceEEEEecc
Q 012838 287 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIALV 324 (455)
Q Consensus 287 ~~pD~vvvpvGtGgt~~Gl~~g~~~~g~----~~~vigVe~~ 324 (455)
+.||.||++ +...+.|+..++++.|. ++.|+|.+-.
T Consensus 184 ~~~~ai~~~--~d~~A~g~~~al~~~g~~vP~di~vig~D~~ 223 (289)
T 3k9c_A 184 TPPTAVVAF--NDRCATGVLDLLVRSGRDVPADISVVGYDDS 223 (289)
T ss_dssp SCCSEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCCCEEEEC--ChHHHHHHHHHHHHcCCCCCCceEEEEECCH
Confidence 578999864 56788899999998874 5789998754
No 50
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=24.45 E-value=4.2e+02 Score=24.39 Aligned_cols=13 Identities=31% Similarity=0.036 Sum_probs=7.3
Q ss_pred CCCCEEEecCchh
Q 012838 139 HIVTDLVTCGGCQ 151 (455)
Q Consensus 139 ~G~~~VVt~G~~~ 151 (455)
.|+..|||.|+.+
T Consensus 8 ~gKvalVTGas~G 20 (255)
T 4g81_D 8 TGKTALVTGSARG 20 (255)
T ss_dssp TTCEEEETTCSSH
T ss_pred CCCEEEEeCCCcH
Confidence 3566667755544
No 51
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=23.00 E-value=2.2e+02 Score=25.72 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=41.0
Q ss_pred cchhhhHHhhHHHHHhCCCCEEE-ecCchhHHHH-HHHHhCCeEEEEe-------cCCCccccchhhHHHHhCCc-EEEe
Q 012838 123 GNKARKMDALLPLLEDHIVTDLV-TCGGCQSAHA-TAVERGLKSHLLL-------RGEQPQILTGYNLISTIYGK-VTYV 192 (455)
Q Consensus 123 snK~Rkl~~~l~~A~~~G~~~VV-t~G~~~sNha-~Aa~~Gl~~~iv~-------~~~~~~~~~~~~~~~~~~GA-V~~v 192 (455)
-|-+.-+...+..|++.|++.|| ++..+.+... +-...|++.++|. |+.. +.+.......+..|. |+.-
T Consensus 26 eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~-e~~~e~~~~L~~~G~~V~t~ 104 (201)
T 1vp8_A 26 ENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGEN-TMPPEVEEELRKRGAKIVRQ 104 (201)
T ss_dssp GGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCC-SSCHHHHHHHHHTTCEEEEC
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCC-cCCHHHHHHHHhCCCEEEEE
Confidence 46677888889999999999887 3222222222 2223588999988 3222 122223344677887 5543
No 52
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=22.75 E-value=1.3e+02 Score=27.33 Aligned_cols=35 Identities=6% Similarity=0.050 Sum_probs=27.7
Q ss_pred CCCCEEEEeCCCcchHHHHHHHHHhcCC----CceEEEEec
Q 012838 287 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 323 (455)
Q Consensus 287 ~~pD~vvvpvGtGgt~~Gl~~g~~~~g~----~~~vigVe~ 323 (455)
+.||.||+. +...+.|+..++++.|. ++.|+|.+.
T Consensus 191 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vig~d~ 229 (292)
T 3k4h_A 191 QPPTAIMAT--DDLIGLGVLSALSKKGFVVPKDVSIVSFNN 229 (292)
T ss_dssp SCCSEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred CCCcEEEEc--ChHHHHHHHHHHHHhCCCCCCeEEEEEecC
Confidence 578999864 56788899999998874 577888763
No 53
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*
Probab=22.72 E-value=3.1e+02 Score=27.28 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHH---HHHHHHHHHcCCCCCCEEEEeCC-CcchHHHHHHHH----HhcCCCceEEEEeccC
Q 012838 262 AGDAVALLGVFRL---LQYLSQDHLLGRKRAIKFVVDAG-TGTTAVGLGLGA----ICLGLPWEVTAIALVD 325 (455)
Q Consensus 262 ~~np~~~~G~~t~---~~Ei~eq~~~g~~~pD~vvvpvG-tGgt~~Gl~~g~----~~~g~~~~vigVe~~g 325 (455)
|.||.. |++.. ..||.+.+.......|.||+++| +|||=.|.+--+ ++.+ ..+++|...+
T Consensus 84 G~~p~~--G~~aa~e~~~~i~~~l~~~~~~~d~vfi~ag~GGGTGtGa~pvia~~~ke~~--~~~~~vvt~P 151 (389)
T 4ei7_A 84 ARNPQV--GEEAFVKHETKIFEAVKQEFEDRDFIWITCGLGGGTGTGALLKAIEMLYEHD--YNFGLLLTLP 151 (389)
T ss_dssp CCCHHH--HHHHHHHTHHHHHHHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTT--CCEEEEEEEC
T ss_pred CCChHH--HHHHHHHHHHHHHHHHHhhcCCccEEEEEecCCCCCccccHHHHHHHHHHcC--CCEEEEEEeC
Confidence 566764 33222 34454443210125788888877 777777776544 3333 5566665543
No 54
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=22.61 E-value=1.3e+02 Score=27.51 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=28.9
Q ss_pred CCCCEEEEeCCCcchHHHHHHHHHhcCC---CceEEEEec
Q 012838 287 KRAIKFVVDAGTGTTAVGLGLGAICLGL---PWEVTAIAL 323 (455)
Q Consensus 287 ~~pD~vvvpvGtGgt~~Gl~~g~~~~g~---~~~vigVe~ 323 (455)
+.+|.+++-+.+...+.|+..++++.|. ++.|+|++-
T Consensus 194 ~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG~D~ 233 (306)
T 8abp_A 194 PEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 233 (306)
T ss_dssp TTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEEESS
T ss_pred CCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEEeCc
Confidence 5788855556777889999999999886 577888764
No 55
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=22.04 E-value=1.3e+02 Score=28.19 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=28.3
Q ss_pred CCCCEEEEeCCCcchHHHHHHHHHhcCC----CceEEEEec
Q 012838 287 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 323 (455)
Q Consensus 287 ~~pD~vvvpvGtGgt~~Gl~~g~~~~g~----~~~vigVe~ 323 (455)
+.||.||+ .+...+.|+..++++.|. ++.|+|.+-
T Consensus 241 ~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~di~vvg~D~ 279 (338)
T 3dbi_A 241 AKFSALVA--SNDDMAIGAMKALHERGVAVPEQVSVIGFDD 279 (338)
T ss_dssp CCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred CCCeEEEE--CChHHHHHHHHHHHHcCCCCCCCeEEEEECC
Confidence 57999986 456788899999998874 578999874
No 56
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=21.78 E-value=1.9e+02 Score=25.71 Aligned_cols=44 Identities=14% Similarity=-0.039 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCC-CCCEEEEeCCCcchHHHHHHHHHhcC---CCceEEEEec
Q 012838 274 LLQYLSQDHLLGRK-RAIKFVVDAGTGTTAVGLGLGAICLG---LPWEVTAIAL 323 (455)
Q Consensus 274 ~~~Ei~eq~~~g~~-~pD~vvvpvGtGgt~~Gl~~g~~~~g---~~~~vigVe~ 323 (455)
...++.++. + .||.||+. +...+.|+..++++.| .++.|+|++-
T Consensus 169 ~~~~~l~~~----~~~~~ai~~~--~d~~a~g~~~al~~~g~vp~di~vvg~d~ 216 (272)
T 3o74_A 169 LMQQLIDDL----GGLPDALVTT--SYVLLQGVFDTLQARPVDSRQLQLGTFGD 216 (272)
T ss_dssp HHHHHHHHH----TSCCSEEEES--SHHHHHHHHHHHHTSCGGGCCCEEEEESC
T ss_pred HHHHHHhcC----CCCCcEEEEe--CchHHHHHHHHHHHcCCCccceEEEEeCC
Confidence 345555542 4 68999874 5678899999999988 3688999864
No 57
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=21.59 E-value=1.4e+02 Score=26.94 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=27.9
Q ss_pred CCCCEEEEeCCCcchHHHHHHHHHhcCC----CceEEEEe
Q 012838 287 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIA 322 (455)
Q Consensus 287 ~~pD~vvvpvGtGgt~~Gl~~g~~~~g~----~~~vigVe 322 (455)
+.||.||+. +...+.|+..++++.|. ++.|+|.+
T Consensus 187 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 187 NTPKALFCN--SDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp SCCSEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCCcEEEEc--CCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 578999864 66788999999998874 67899987
No 58
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=20.59 E-value=1.4e+02 Score=27.29 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=28.4
Q ss_pred CCCCEEEEeCCCcchHHHHHHHHHhcCC----CceEEEEecc
Q 012838 287 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIALV 324 (455)
Q Consensus 287 ~~pD~vvvpvGtGgt~~Gl~~g~~~~g~----~~~vigVe~~ 324 (455)
+.||.||+ .+...+.|+..++++.|. ++.|+|.+-.
T Consensus 186 ~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~di~vig~D~~ 225 (294)
T 3qk7_A 186 VPPTAIIT--DCNMLGDGVASALDKAGLLGGEGISLIAYDGL 225 (294)
T ss_dssp SCCSEEEE--SSHHHHHHHHHHHHHTTCSSTTSCEEEEETCS
T ss_pred CCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEeecCc
Confidence 57999986 466788999999998874 5788888643
Done!