BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012839
         (455 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Poly- Alanine
          Length = 908

 Score = 32.7 bits (73), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 224 VRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDL 281
           V  V +L S+H +T P EE  TP  +S  +    Y      +G  ++R L + L++DL
Sbjct: 376 VMAVDALASSHPLTTPAEEVNTPAQISEMFDSISY-----SKGASVIRMLSNFLTEDL 428


>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Cleaved Poly-Alanine
 pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Substance P
          Length = 908

 Score = 32.7 bits (73), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 224 VRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDL 281
           V  V +L S+H +T P EE  TP  +S  +    Y      +G  ++R L + L++DL
Sbjct: 376 VMAVDALASSHPLTTPAEEVNTPAQISEMFDSISY-----SKGASVIRMLSNFLTEDL 428


>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
 pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Alanine
 pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Bestatin
          Length = 909

 Score = 32.7 bits (73), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 224 VRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDL 281
           V  V +L S+H +T P EE  TP  +S  +    Y      +G  ++R L + L++DL
Sbjct: 377 VMAVDALASSHPLTTPAEEVNTPAQISEMFDSISY-----SKGASVIRMLSNFLTEDL 429


>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
 pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
          Length = 959

 Score = 32.7 bits (73), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 224 VRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDL 281
           V  V +L S+H +T P EE  TP  +S  +    Y      +G  ++R L + L++DL
Sbjct: 420 VMAVDALASSHPLTTPAEEVNTPAQISEMFDSISY-----SKGASVIRMLSNFLTEDL 472


>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
 pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
           Conformation
          Length = 837

 Score = 32.3 bits (72), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
           KQRP    A S+ T    K+A LC +NA +   LLKAL  PK+
Sbjct: 364 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 403


>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
          Length = 830

 Score = 32.3 bits (72), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
           KQRP    A S+ T    K+A LC +NA +   LLKAL  PK+
Sbjct: 359 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 398


>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
           Stroke State To 2.6 Angstrom Resolution: Flexibility And
           Function In The Head
 pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
           Conformation
 pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
          Length = 840

 Score = 32.3 bits (72), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
           KQRP    A S+ T    K+A LC +NA +   LLKAL  PK+
Sbjct: 364 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 403


>pdb|1B7T|A Chain A, Myosin Digested By Papain
 pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
           Conformation
 pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
           Conformation
 pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
           Conformation
          Length = 835

 Score = 32.3 bits (72), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
           KQRP    A S+ T    K+A LC +NA +   LLKAL  PK+
Sbjct: 364 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 403


>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
           State
 pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
           State
 pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Quick Release Step
 pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Quick Stretch Step
          Length = 831

 Score = 32.3 bits (72), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
           KQRP    A S+ T    K+A LC +NA +   LLKAL  PK+
Sbjct: 360 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 399


>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
          Length = 838

 Score = 32.3 bits (72), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
           KQRP    A S+ T    K+A LC +NA +   LLKAL  PK+
Sbjct: 366 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 405


>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
           Mechanical Elements In The Transduction Pathways Of This
           Allosteric Motor
 pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
           Mechanical Elements In The Transduction Pathways Of This
           Allosteric Motor
          Length = 840

 Score = 32.0 bits (71), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
           KQRP    A S+ T    K+A LC +NA +   LLKAL  PK+
Sbjct: 365 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 404


>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
 pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
 pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
           Iv
 pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
          Length = 903

 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 11/143 (7%)

Query: 224 VRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDLPS 283
           V  V +L S+H ++ P  E  TP  +S  +    Y +     G  +LR L S LS+    
Sbjct: 379 VMAVDALASSHPLSTPASEINTPAQISELFDAISYSK-----GASVLRMLSSFLSE---- 429

Query: 284 DLQKLRCKVAFHALRFAPPI-LQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPGPE 342
           D+ K       H   +   I L L + L E + ++   L   +R   + W      P   
Sbjct: 430 DVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVIT 489

Query: 343 YDEMISNERKQRPELLTARSNMT 365
            D   +    Q   LL   SN+T
Sbjct: 490 VDTS-TGTLSQEHFLLDPDSNVT 511


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,684,072
Number of Sequences: 62578
Number of extensions: 521706
Number of successful extensions: 959
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 23
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)