BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012839
         (455 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  185 bits (469), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 161/305 (52%), Gaps = 15/305 (4%)

Query: 126 EFWKQPDGMGYRPCLHFSREYRKYSNAIVKDRRKYLLVVVSGGMNQQRNQIVDAVVIARI 185
           E W+     G+RP    S   R       K+   YL V  +GG+NQQR+ I +AV+ ARI
Sbjct: 61  ELWESAKSGGWRP----SSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARI 116

Query: 186 LGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLANDVRIVSSLPSTHIMTRPVEEK-- 243
           + A LV+P L  N  W D+S F  I+D+EHF   L  DV+IV  +P  H   +  + K  
Sbjct: 117 MNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAF 176

Query: 244 --RTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDLPS-DLQKLRCKVAFHALRFA 300
             R P     +W     L+ +     + L     RL++++ + + Q+LRC+V +HALRF 
Sbjct: 177 QIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFK 236

Query: 301 PPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLP--GPEYDEMISNERKQRPELL 358
           P I++L   + +++RS+G ++S+HLR E D+    GC     PE  +++   RK+     
Sbjct: 237 PHIMKLSESIVDKLRSQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKEN---- 292

Query: 359 TARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEF 418
            A   + Y+ER+  G CPL   EV  +L+A+      RIY A GE  GG++ + P  T F
Sbjct: 293 FADKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLF 352

Query: 419 PHLYN 423
           P L N
Sbjct: 353 PRLDN 357


>sp|Q2G626|MIAA_NOVAD tRNA dimethylallyltransferase OS=Novosphingobium aromaticivorans
           (strain DSM 12444) GN=miaA PE=3 SV=1
          Length = 281

 Score = 37.0 bits (84), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 13/128 (10%)

Query: 331 VWVRT---GCLPGPEYDEMISNERKQRP-ELLTARSNMTYHERKLAGLCPLNAVEVTRLL 386
           +++RT   G  P PE D  +  E +  P E   A    +  ER    L P +A  +TR L
Sbjct: 81  LYIRTLLDGIAPVPEIDPQVREEVRAMPLEAAYAELEKSDPERARK-LAPADAQRITRAL 139

Query: 387 KALGAPKIARIYW----AGGEPLGGKEALLPLIT--EFPHLYNKEDLALPVTFSCLLMEE 440
           + + +      YW    +GG  +G   AL PLI   E   LY + DL   + +    +EE
Sbjct: 140 EVMRSTGRPLAYWQQQLSGG--IGNDVALAPLILLPERQWLYRRCDLRFELMWDGGALEE 197

Query: 441 IWAMRFRD 448
           + A+  RD
Sbjct: 198 VEALLARD 205


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,284,297
Number of Sequences: 539616
Number of extensions: 7451696
Number of successful extensions: 18188
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18184
Number of HSP's gapped (non-prelim): 6
length of query: 455
length of database: 191,569,459
effective HSP length: 121
effective length of query: 334
effective length of database: 126,275,923
effective search space: 42176158282
effective search space used: 42176158282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)