Query 012839
Match_columns 455
No_of_seqs 180 out of 417
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 17:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012839.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012839hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vjna_ d.157.1.4 (A:) Hypothe 44.9 15 0.0011 31.2 5.8 54 174-233 141-200 (209)
2 d2ihoa2 d.3.1.18 (A:156-293) A 41.2 1.7 0.00012 36.5 -1.2 33 189-221 31-68 (138)
3 d1l5ia_ d.89.1.4 (A:) DNA-bind 31.8 18 0.0013 29.6 3.7 26 374-400 17-42 (118)
4 d1oqya2 a.5.2.1 (A:317-360) DN 27.7 4.7 0.00035 28.1 -0.5 26 378-403 1-30 (44)
5 d2bsza1 d.3.1.5 (A:6-275) Aryl 22.0 19 0.0014 32.0 2.4 30 369-406 62-95 (270)
6 d2fr5a1 c.97.1.1 (A:11-146) mo 19.8 33 0.0024 27.8 3.2 41 384-429 94-134 (136)
7 d1uwza_ c.97.1.1 (A:) mono-dom 18.9 49 0.0036 26.5 4.1 39 385-427 92-130 (130)
8 d1wgla_ a.5.2.4 (A:) Toll-inte 18.5 15 0.0011 26.7 0.6 16 407-422 9-24 (59)
9 d1mn3a_ a.5.2.4 (A:) Vacuolar 17.1 13 0.00093 26.7 -0.1 14 409-422 14-27 (54)
10 d1jjcb2 a.6.1.1 (B:400-474) Do 16.5 34 0.0025 25.0 2.2 23 369-392 13-35 (75)
No 1
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=44.90 E-value=15 Score=31.18 Aligned_cols=54 Identities=15% Similarity=0.346 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCeEeecccccccccCC-CCCCCCCCChHHHHHhccC-----CeEEeccCccc
Q 012839 174 NQIVDAVVIARILGAALVVPILQVNVIWGD-ESEFSDIFDLEHFKSVLAN-----DVRIVSSLPST 233 (455)
Q Consensus 174 ~~IcDAVaVARiLNATLViP~Ld~~s~W~D-~S~F~DIFDvdhFI~sL~~-----DVrIVk~LP~~ 233 (455)
..--+|+-+|+.|++-.|||. -|+. ...| ++=.+|.|++.++. ++-.+.++|++
T Consensus 141 m~~~ea~~~~~~l~pk~viP~-----H~~t~~~~~-~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~ 200 (209)
T d1vjna_ 141 IGPKEAKEVADLLNAKVIIPM-----HYKTKYLKF-NLLPVDDFLKLFDSYERVGNILELFEKPKE 200 (209)
T ss_dssp CCHHHHHHHHHHTTCSEEEEE-----SCCCSSCCT-TCCCTHHHHTTSSCCEECCSEEEESSCCCS
T ss_pred cCHHHHHHHHHHhCCCEEEEe-----ccCCccccc-CcCCHHHHHHHhhhhcccCcEEEeccCCCC
Confidence 345789999999999999997 3533 2333 45567889888763 34445566654
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=41.23 E-value=1.7 Score=36.48 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=27.7
Q ss_pred eEeecccccccccCCC-----CCCCCCCChHHHHHhcc
Q 012839 189 ALVVPILQVNVIWGDE-----SEFSDIFDLEHFKSVLA 221 (455)
Q Consensus 189 TLViP~Ld~~s~W~D~-----S~F~DIFDvdhFI~sL~ 221 (455)
-||+|...-+++|+++ ..=++|||-|.|--..+
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~K 68 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMK 68 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHH
Confidence 4899999999999997 34579999999987654
No 3
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=31.85 E-value=18 Score=29.58 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEe
Q 012839 374 LCPLNAVEVTRLLKALGAPKIARIYWA 400 (455)
Q Consensus 374 ~CPLTPeEVgl~LrALGf~~~T~IYlA 400 (455)
+||||+||+.-.|+.|==+.+.. ||.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~~-~i~ 42 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNKL-FIK 42 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCEE-EEE
T ss_pred CCCCCHHHHHHHHHHhcCCccee-EEE
Confidence 79999999999999998766653 444
No 4
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.67 E-value=4.7 Score=28.10 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=19.1
Q ss_pred CHHHHH--HHHHHhCCCCCc--eEEEeeCC
Q 012839 378 NAVEVT--RLLKALGAPKIA--RIYWAGGE 403 (455)
Q Consensus 378 TPeEVg--l~LrALGf~~~T--~IYlAsGe 403 (455)
||+|.. -=|.+|||+++. ..|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 566644 458999999998 46888765
No 5
>d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium loti [TaxId: 381]}
Probab=21.98 E-value=19 Score=32.03 Aligned_cols=30 Identities=30% Similarity=0.297 Sum_probs=22.3
Q ss_pred hhcCCCCCCCHHHH----HHHHHHhCCCCCceEEEeeCCCCC
Q 012839 369 RKLAGLCPLNAVEV----TRLLKALGAPKIARIYWAGGEPLG 406 (455)
Q Consensus 369 ~R~~G~CPLTPeEV----gl~LrALGf~~~T~IYlAsGeiYG 406 (455)
+++.|-| -|. +.+|++||| .+|+.+|.|+.
T Consensus 62 ~~rGG~C----~E~N~lf~~lL~~LGF----~v~~~~~rV~~ 95 (270)
T d2bsza1 62 GGRGGYC----FEHNLLFMHALKALGF----EVGGLAARVLW 95 (270)
T ss_dssp SCCCBCH----HHHHHHHHHHHHHHTC----EEEEEEEEECS
T ss_pred cCCcccc----hhhhHHHHHHHHHcCC----ceEEEEEEEec
Confidence 4558999 774 478999999 57777776664
No 6
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.83 E-value=33 Score=27.82 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=32.0
Q ss_pred HHHHHhCCCCCceEEEeeCCCCCCccccccHHhhCCCCcccccCCC
Q 012839 384 RLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLAL 429 (455)
Q Consensus 384 l~LrALGf~~~T~IYlAsGeiYGg~~~L~pL~~~FPnl~tKetLat 429 (455)
-+|.-+ ..++.||+...+ |+.....|+++.|.-+++++|=.
T Consensus 94 Q~l~E~--~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~~ 134 (136)
T d2fr5a1 94 QVMREF--GTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQK 134 (136)
T ss_dssp HHHHHT--CSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGTC
T ss_pred HHHHhh--CCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhCc
Confidence 345554 578999998875 66667799999999999998853
No 7
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=18.93 E-value=49 Score=26.46 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=29.7
Q ss_pred HHHHhCCCCCceEEEeeCCCCCCccccccHHhhCCCCcccccC
Q 012839 385 LLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDL 427 (455)
Q Consensus 385 ~LrALGf~~~T~IYlAsGeiYGg~~~L~pL~~~FPnl~tKetL 427 (455)
+|.-++ +.++.||+...+ |+-.-..|+++.|.=+++++|
T Consensus 92 ~l~E~~-~~~~~i~l~~~~---g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 92 VISELC-TKDVIVVLTNLQ---GQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp HHHHHS-CTTCEEEEECSS---SCEEEEEHHHHSTTCCCGGGC
T ss_pred HHHHhC-CCCcEEEEECCC---CCEEEEEHHHhCcCCCCcccC
Confidence 455553 568999999887 444445899999999998876
No 8
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.45 E-value=15 Score=26.74 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.3
Q ss_pred CccccccHHhhCCCCc
Q 012839 407 GKEALLPLITEFPHLY 422 (455)
Q Consensus 407 g~~~L~pL~~~FPnl~ 422 (455)
-++.+.-|++|||++-
T Consensus 9 ~Ee~i~~LkeMFP~~D 24 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMD 24 (59)
T ss_dssp CHHHHHHHHHHCSSSC
T ss_pred cHHHHHHHHHHCCCCC
Confidence 4567899999999984
No 9
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.15 E-value=13 Score=26.67 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=11.4
Q ss_pred cccccHHhhCCCCc
Q 012839 409 EALLPLITEFPHLY 422 (455)
Q Consensus 409 ~~L~pL~~~FPnl~ 422 (455)
..++.|++|||++-
T Consensus 14 e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHCTTSC
T ss_pred HHHHHHHHHCCCCC
Confidence 45788999999873
No 10
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=16.48 E-value=34 Score=25.01 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.6
Q ss_pred hhcCCCCCCCHHHHHHHHHHhCCC
Q 012839 369 RKLAGLCPLNAVEVTRLLKALGAP 392 (455)
Q Consensus 369 ~R~~G~CPLTPeEVgl~LrALGf~ 392 (455)
+|.-|.. ++++|+.-+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 3456776 9999999999999995
Done!