Query 012840
Match_columns 455
No_of_seqs 242 out of 1167
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:51:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1605 TFIIF-interacting CTD 100.0 2E-48 4.2E-53 382.6 14.3 180 266-445 81-262 (262)
2 TIGR02251 HIF-SF_euk Dullard-l 100.0 1.8E-40 3.8E-45 305.1 17.9 161 274-434 1-162 (162)
3 PF03031 NIF: NLI interacting 100.0 2.2E-38 4.7E-43 286.8 16.7 158 275-436 1-159 (159)
4 TIGR02245 HAD_IIID1 HAD-superf 100.0 2.1E-36 4.5E-41 287.0 15.3 158 271-444 18-193 (195)
5 KOG2832 TFIIF-interacting CTD 100.0 2.7E-32 5.9E-37 275.0 9.2 161 268-444 183-345 (393)
6 TIGR02250 FCP1_euk FCP1-like p 100.0 3.8E-31 8.2E-36 242.7 13.4 138 271-411 3-154 (156)
7 COG5190 FCP1 TFIIF-interacting 100.0 6.6E-29 1.4E-33 255.6 8.2 177 268-445 206-384 (390)
8 smart00577 CPDc catalytic doma 99.9 2.1E-26 4.6E-31 208.0 15.4 145 273-417 1-148 (148)
9 KOG0323 TFIIF-interacting CTD 99.9 1.3E-21 2.8E-26 211.5 10.4 136 273-411 145-297 (635)
10 TIGR01685 MDP-1 magnesium-depe 98.5 2.7E-07 5.8E-12 86.8 7.7 138 275-412 3-158 (174)
11 TIGR01681 HAD-SF-IIIC HAD-supe 98.4 1.5E-07 3.3E-12 83.3 3.1 111 275-397 1-121 (128)
12 COG5190 FCP1 TFIIF-interacting 98.3 3.4E-07 7.4E-12 95.5 3.1 137 271-409 23-172 (390)
13 PRK13288 pyrophosphatase PpaX; 98.2 5.8E-07 1.3E-11 84.8 1.6 96 313-409 81-180 (214)
14 COG4996 Predicted phosphatase 98.2 6.1E-06 1.3E-10 74.6 7.8 138 276-419 2-154 (164)
15 cd01427 HAD_like Haloacid deha 98.1 1.3E-06 2.8E-11 73.5 2.9 107 276-398 1-127 (139)
16 TIGR01662 HAD-SF-IIIA HAD-supe 98.1 2E-06 4.3E-11 75.3 4.1 113 276-406 2-126 (132)
17 PRK14988 GMP/IMP nucleotidase; 98.1 1E-06 2.2E-11 84.9 1.9 93 313-406 92-188 (224)
18 PRK13225 phosphoglycolate phos 98.0 1.5E-06 3.2E-11 86.8 1.3 95 313-408 141-236 (273)
19 TIGR01684 viral_ppase viral ph 98.0 1.5E-05 3.2E-10 80.8 7.9 73 271-365 123-197 (301)
20 PHA03398 viral phosphatase sup 98.0 3E-05 6.5E-10 78.7 9.3 120 271-413 125-280 (303)
21 TIGR00338 serB phosphoserine p 97.9 2.2E-06 4.8E-11 80.9 0.4 97 313-411 84-194 (219)
22 TIGR00213 GmhB_yaeD D,D-heptos 97.9 1.3E-05 2.8E-10 74.2 4.9 115 275-407 2-146 (176)
23 TIGR01656 Histidinol-ppas hist 97.9 8.6E-06 1.9E-10 73.4 3.3 116 276-407 2-141 (147)
24 COG0637 Predicted phosphatase/ 97.8 2.9E-06 6.3E-11 81.8 -0.7 99 313-412 85-187 (221)
25 TIGR01261 hisB_Nterm histidino 97.8 2.5E-05 5.4E-10 72.3 5.4 123 275-412 2-148 (161)
26 PF12689 Acid_PPase: Acid Phos 97.8 5.8E-05 1.3E-09 70.9 7.7 114 274-397 3-137 (169)
27 TIGR01686 FkbH FkbH-like domai 97.8 3E-05 6.5E-10 78.7 5.6 108 274-397 3-116 (320)
28 PRK08942 D,D-heptose 1,7-bisph 97.8 3.5E-05 7.6E-10 71.4 5.6 116 274-406 3-142 (181)
29 PHA02597 30.2 hypothetical pro 97.8 3.3E-06 7E-11 78.8 -1.5 96 313-410 73-173 (197)
30 PHA02530 pseT polynucleotide k 97.7 2.6E-05 5.6E-10 77.5 3.7 128 272-410 156-295 (300)
31 PLN02940 riboflavin kinase 97.6 7.6E-06 1.7E-10 85.4 -1.3 97 313-410 92-193 (382)
32 TIGR01549 HAD-SF-IA-v1 haloaci 97.6 1.6E-05 3.4E-10 71.0 0.3 82 313-397 63-147 (154)
33 TIGR01672 AphA HAD superfamily 97.5 7.4E-05 1.6E-09 73.6 4.0 132 271-407 60-207 (237)
34 TIGR01664 DNA-3'-Pase DNA 3'-p 97.5 0.00018 4E-09 66.7 5.8 107 274-394 13-137 (166)
35 PF13419 HAD_2: Haloacid dehal 97.4 0.00013 2.8E-09 64.5 3.5 94 312-406 75-172 (176)
36 PRK06769 hypothetical protein; 97.4 0.00014 3.1E-09 67.5 3.6 117 275-409 5-135 (173)
37 TIGR01489 DKMTPPase-SF 2,3-dik 97.4 0.00018 3.8E-09 65.6 4.0 87 313-400 71-178 (188)
38 TIGR01509 HAD-SF-IA-v3 haloaci 97.3 0.0002 4.3E-09 64.9 3.6 92 313-406 84-179 (183)
39 TIGR01668 YqeG_hyp_ppase HAD s 97.2 0.00051 1.1E-08 63.6 5.5 109 273-410 24-135 (170)
40 PRK13582 thrH phosphoserine ph 97.2 7.1E-05 1.5E-09 69.8 -0.2 94 313-407 67-167 (205)
41 PLN03243 haloacid dehalogenase 97.2 0.00031 6.8E-09 69.7 4.3 98 313-411 108-209 (260)
42 PF05152 DUF705: Protein of un 97.2 0.0012 2.6E-08 66.7 8.1 71 272-364 120-192 (297)
43 PRK05446 imidazole glycerol-ph 97.2 0.00063 1.4E-08 70.8 6.4 121 273-408 1-145 (354)
44 PLN02770 haloacid dehalogenase 97.2 0.00042 9.1E-09 67.6 4.7 97 313-410 107-207 (248)
45 TIGR02253 CTE7 HAD superfamily 97.2 0.00033 7.2E-09 66.0 3.6 95 313-408 93-192 (221)
46 TIGR01454 AHBA_synth_RP 3-amin 97.1 0.00037 8.1E-09 65.3 3.6 96 313-409 74-173 (205)
47 TIGR01993 Pyr-5-nucltdase pyri 97.1 0.00025 5.3E-09 65.4 2.3 92 313-407 83-181 (184)
48 COG0546 Gph Predicted phosphat 97.1 0.00033 7.1E-09 67.2 2.9 94 313-407 88-185 (220)
49 PRK11009 aphA acid phosphatase 97.1 0.0014 3E-08 64.7 7.3 131 271-407 60-207 (237)
50 KOG3109 Haloacid dehalogenase- 97.1 0.0003 6.5E-09 68.6 2.4 87 313-401 99-195 (244)
51 TIGR01449 PGP_bact 2-phosphogl 97.1 0.00049 1.1E-08 64.4 3.7 97 313-410 84-184 (213)
52 TIGR02254 YjjG/YfnB HAD superf 97.0 0.00035 7.6E-09 65.6 2.6 94 313-407 96-194 (224)
53 TIGR01428 HAD_type_II 2-haloal 97.0 0.00042 9.1E-09 64.5 2.9 94 313-407 91-188 (198)
54 TIGR02137 HSK-PSP phosphoserin 97.0 0.00044 9.6E-09 66.2 2.6 49 313-362 67-115 (203)
55 TIGR01670 YrbI-phosphatas 3-de 96.9 0.001 2.3E-08 60.6 4.6 112 275-406 2-114 (154)
56 PLN02954 phosphoserine phospha 96.9 0.00033 7.1E-09 66.4 1.1 92 313-406 83-191 (224)
57 PRK10826 2-deoxyglucose-6-phos 96.9 0.00092 2E-08 63.5 4.1 100 313-413 91-194 (222)
58 PRK09456 ?-D-glucose-1-phospha 96.8 0.00092 2E-08 62.7 3.4 101 313-413 83-187 (199)
59 TIGR02009 PGMB-YQAB-SF beta-ph 96.8 0.00059 1.3E-08 62.2 1.8 92 313-407 87-182 (185)
60 TIGR01689 EcbF-BcbF capsule bi 96.8 0.0034 7.3E-08 56.4 6.5 84 275-376 2-99 (126)
61 PLN02575 haloacid dehalogenase 96.8 0.0013 2.8E-08 69.1 4.3 98 313-411 215-316 (381)
62 PRK09449 dUMP phosphatase; Pro 96.8 0.0012 2.6E-08 62.6 3.7 93 313-406 94-191 (224)
63 TIGR01663 PNK-3'Pase polynucle 96.7 0.0022 4.9E-08 70.0 6.1 108 273-394 167-294 (526)
64 PRK10725 fructose-1-P/6-phosph 96.7 0.001 2.2E-08 61.1 2.6 95 313-409 87-184 (188)
65 PRK11587 putative phosphatase; 96.7 0.0028 6.1E-08 60.3 5.4 97 313-411 82-182 (218)
66 TIGR01422 phosphonatase phosph 96.6 0.002 4.4E-08 62.5 4.2 98 313-410 98-200 (253)
67 PRK13226 phosphoglycolate phos 96.5 0.0029 6.3E-08 60.9 4.2 95 313-408 94-192 (229)
68 PRK13222 phosphoglycolate phos 96.4 0.0025 5.5E-08 60.0 3.4 93 313-406 92-188 (226)
69 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.4 0.005 1.1E-07 56.8 5.4 94 313-407 79-186 (201)
70 PRK13223 phosphoglycolate phos 96.3 0.0039 8.4E-08 62.0 4.0 94 313-407 100-197 (272)
71 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.3 0.0065 1.4E-07 59.1 5.4 94 275-394 9-105 (242)
72 PRK11133 serB phosphoserine ph 96.3 0.0014 2.9E-08 67.4 0.6 95 313-408 180-288 (322)
73 PRK13478 phosphonoacetaldehyde 96.2 0.0062 1.3E-07 59.9 5.0 98 313-410 100-202 (267)
74 PRK09484 3-deoxy-D-manno-octul 96.2 0.007 1.5E-07 56.7 5.0 115 273-408 20-136 (183)
75 PLN02779 haloacid dehalogenase 96.1 0.0057 1.2E-07 61.4 4.4 98 313-411 143-246 (286)
76 PRK10563 6-phosphogluconate ph 96.1 0.0032 7E-08 59.6 2.3 95 313-410 87-185 (221)
77 TIGR03351 PhnX-like phosphonat 96.1 0.0052 1.1E-07 58.1 3.7 95 313-407 86-186 (220)
78 TIGR01533 lipo_e_P4 5'-nucleot 96.1 0.0054 1.2E-07 61.6 3.8 92 272-364 73-172 (266)
79 PRK08238 hypothetical protein; 96.1 0.0057 1.2E-07 66.1 4.3 48 313-364 71-119 (479)
80 TIGR02247 HAD-1A3-hyp Epoxide 96.1 0.0023 5E-08 60.1 1.1 99 312-411 92-196 (211)
81 TIGR01691 enolase-ppase 2,3-di 96.0 0.0044 9.5E-08 60.4 3.0 95 313-408 94-193 (220)
82 COG0560 SerB Phosphoserine pho 96.0 0.012 2.6E-07 56.9 5.8 85 313-398 76-174 (212)
83 TIGR01990 bPGM beta-phosphoglu 96.0 0.0048 1E-07 56.3 2.8 91 314-407 87-181 (185)
84 TIGR02252 DREG-2 REG-2-like, H 96.0 0.0064 1.4E-07 56.7 3.7 90 314-405 105-199 (203)
85 COG1011 Predicted hydrolase (H 95.9 0.01 2.3E-07 55.8 4.9 84 313-397 98-184 (229)
86 TIGR01548 HAD-SF-IA-hyp1 haloa 95.7 0.018 3.9E-07 53.8 5.6 82 315-397 107-191 (197)
87 PLN02811 hydrolase 95.6 0.0086 1.9E-07 57.1 3.1 97 313-410 77-183 (220)
88 PLN02919 haloacid dehalogenase 95.4 0.021 4.5E-07 67.3 5.6 97 315-411 162-262 (1057)
89 PRK06698 bifunctional 5'-methy 95.1 0.018 3.9E-07 61.4 3.9 92 313-407 329-423 (459)
90 PRK09552 mtnX 2-hydroxy-3-keto 95.1 0.044 9.5E-07 52.3 6.1 96 313-408 73-184 (219)
91 COG0561 Cof Predicted hydrolas 95.1 0.067 1.4E-06 52.2 7.3 58 274-354 3-61 (264)
92 PF08645 PNK3P: Polynucleotide 95.0 0.036 7.7E-07 51.3 4.9 103 275-395 1-129 (159)
93 PRK00192 mannosyl-3-phosphogly 94.9 0.067 1.5E-06 52.8 6.8 58 274-354 4-62 (273)
94 PF08282 Hydrolase_3: haloacid 94.7 0.072 1.6E-06 49.8 6.3 54 277-353 1-55 (254)
95 KOG2914 Predicted haloacid-hal 94.7 0.0078 1.7E-07 59.0 -0.4 101 312-412 90-197 (222)
96 COG2179 Predicted hydrolase of 94.6 0.038 8.2E-07 52.2 4.0 118 266-412 20-142 (175)
97 PTZ00445 p36-lilke protein; Pr 94.6 0.042 9E-07 53.8 4.3 129 271-412 40-206 (219)
98 PF13344 Hydrolase_6: Haloacid 94.3 0.07 1.5E-06 45.6 4.8 50 277-350 1-51 (101)
99 TIGR02726 phenyl_P_delta pheny 94.3 0.066 1.4E-06 50.2 5.0 115 274-409 7-123 (169)
100 PRK03669 mannosyl-3-phosphogly 94.3 0.14 3.1E-06 50.4 7.5 59 272-353 5-64 (271)
101 TIGR01487 SPP-like sucrose-pho 94.2 0.13 2.8E-06 48.7 6.9 57 275-354 2-59 (215)
102 TIGR03333 salvage_mtnX 2-hydro 94.2 0.086 1.9E-06 50.2 5.5 94 312-405 68-177 (214)
103 TIGR01493 HAD-SF-IA-v2 Haloaci 94.1 0.014 3E-07 53.1 -0.1 77 313-396 89-168 (175)
104 PRK10513 sugar phosphate phosp 93.9 0.15 3.3E-06 49.7 6.9 57 274-353 3-60 (270)
105 TIGR02461 osmo_MPG_phos mannos 93.9 0.14 3.1E-06 49.6 6.7 53 277-353 2-55 (225)
106 COG0241 HisB Histidinol phosph 93.8 0.078 1.7E-06 50.6 4.5 126 274-413 5-154 (181)
107 PRK10530 pyridoxal phosphate ( 93.8 0.19 4.1E-06 48.8 7.2 58 274-354 3-61 (272)
108 PRK01158 phosphoglycolate phos 93.7 0.24 5.2E-06 46.9 7.6 57 275-354 4-61 (230)
109 TIGR01544 HAD-SF-IE haloacid d 93.6 0.14 3.1E-06 51.8 6.2 104 313-417 120-248 (277)
110 TIGR00099 Cof-subfamily Cof su 93.4 0.2 4.4E-06 48.6 6.8 55 277-354 2-57 (256)
111 TIGR02463 MPGP_rel mannosyl-3- 93.4 0.22 4.7E-06 47.2 6.7 54 277-353 2-56 (221)
112 PRK15126 thiamin pyrimidine py 93.2 0.23 5.1E-06 48.7 6.8 57 275-354 3-60 (272)
113 PRK10976 putative hydrolase; P 93.2 0.24 5.2E-06 48.3 6.8 57 275-354 3-60 (266)
114 PF06941 NT5C: 5' nucleotidase 92.7 0.023 4.9E-07 53.4 -1.0 80 313-407 72-158 (191)
115 COG3882 FkbH Predicted enzyme 92.5 0.15 3.3E-06 55.2 4.6 126 271-411 219-355 (574)
116 smart00775 LNS2 LNS2 domain. T 92.5 0.29 6.4E-06 45.1 6.1 61 277-350 2-67 (157)
117 PF09419 PGP_phosphatase: Mito 92.4 0.3 6.5E-06 46.1 6.1 96 270-395 37-147 (168)
118 TIGR01486 HAD-SF-IIB-MPGP mann 92.2 0.35 7.6E-06 47.2 6.5 54 277-353 2-56 (256)
119 TIGR01482 SPP-subfamily Sucros 92.2 0.37 8.1E-06 45.4 6.4 54 277-353 1-55 (225)
120 TIGR01488 HAD-SF-IB Haloacid D 92.0 0.41 8.9E-06 43.2 6.3 49 313-362 72-121 (177)
121 PF06888 Put_Phosphatase: Puta 92.0 0.21 4.6E-06 49.4 4.7 49 313-362 70-121 (234)
122 TIGR01484 HAD-SF-IIB HAD-super 91.4 0.39 8.4E-06 44.8 5.6 54 276-351 1-55 (204)
123 TIGR01456 CECR5 HAD-superfamil 91.3 0.34 7.3E-06 49.5 5.4 53 275-351 1-62 (321)
124 PRK10444 UMP phosphatase; Prov 91.1 0.31 6.7E-06 48.2 4.9 52 276-351 3-55 (248)
125 PRK10748 flavin mononucleotide 90.9 0.13 2.9E-06 49.8 2.0 89 313-407 112-204 (238)
126 PTZ00174 phosphomannomutase; P 90.8 0.6 1.3E-05 45.6 6.5 52 274-348 5-57 (247)
127 PF11019 DUF2608: Protein of u 90.4 0.31 6.8E-06 48.5 4.2 101 312-412 79-210 (252)
128 PRK10187 trehalose-6-phosphate 90.4 0.59 1.3E-05 46.5 6.1 59 274-350 14-74 (266)
129 PRK12702 mannosyl-3-phosphogly 90.2 0.77 1.7E-05 47.2 6.8 57 275-354 2-59 (302)
130 TIGR01458 HAD-SF-IIA-hyp3 HAD- 90.0 0.35 7.7E-06 47.8 4.2 47 275-341 2-49 (257)
131 TIGR01490 HAD-SF-IB-hyp1 HAD-s 89.8 0.41 8.9E-06 44.4 4.2 85 313-398 86-185 (202)
132 PLN02645 phosphoglycolate phos 89.5 0.45 9.8E-06 48.3 4.6 53 274-350 28-81 (311)
133 COG4502 5'(3')-deoxyribonucleo 89.2 1.1 2.4E-05 41.6 6.3 86 313-413 67-156 (180)
134 TIGR01452 PGP_euk phosphoglyco 88.5 0.63 1.4E-05 46.3 4.7 41 275-339 3-44 (279)
135 PLN02423 phosphomannomutase 87.8 1.2 2.7E-05 43.7 6.2 54 273-352 6-59 (245)
136 PLN02887 hydrolase family prot 87.3 1.4 3E-05 49.2 6.8 59 272-353 306-365 (580)
137 TIGR01485 SPP_plant-cyano sucr 87.1 1.2 2.6E-05 43.3 5.6 60 274-353 1-61 (249)
138 PRK14502 bifunctional mannosyl 86.8 2.3 4.9E-05 48.3 8.2 60 271-353 413-473 (694)
139 TIGR01457 HAD-SF-IIA-hyp2 HAD- 86.2 1.1 2.4E-05 44.0 4.9 53 276-352 3-59 (249)
140 COG2503 Predicted secreted aci 84.0 1.1 2.5E-05 44.8 3.8 79 271-350 76-160 (274)
141 COG0647 NagD Predicted sugar p 83.8 1.4 3.1E-05 44.5 4.5 55 274-352 8-67 (269)
142 TIGR01460 HAD-SF-IIA Haloacid 83.6 1.4 3.1E-05 42.8 4.3 50 277-350 1-55 (236)
143 KOG3120 Predicted haloacid deh 83.6 0.57 1.2E-05 46.4 1.5 41 313-353 83-125 (256)
144 PLN02151 trehalose-phosphatase 82.0 2.6 5.7E-05 44.3 5.7 60 271-348 95-154 (354)
145 TIGR01675 plant-AP plant acid 81.6 4.2 9E-05 40.3 6.7 92 272-364 75-172 (229)
146 TIGR00685 T6PP trehalose-phosp 80.7 1.6 3.4E-05 42.6 3.4 48 273-338 2-51 (244)
147 COG1877 OtsB Trehalose-6-phosp 80.6 3.3 7.1E-05 41.9 5.7 61 270-348 14-76 (266)
148 TIGR02244 HAD-IG-Ncltidse HAD 80.5 2.3 4.9E-05 44.5 4.7 52 311-362 181-240 (343)
149 PLN02580 trehalose-phosphatase 80.2 3.3 7.2E-05 43.9 5.8 61 271-349 116-176 (384)
150 PLN03017 trehalose-phosphatase 80.1 3.3 7.1E-05 43.8 5.7 60 271-348 108-167 (366)
151 PRK10725 fructose-1-P/6-phosph 78.6 1.2 2.6E-05 40.7 1.8 16 274-289 5-20 (188)
152 PF00702 Hydrolase: haloacid d 78.6 2.3 5E-05 39.1 3.6 80 312-395 125-206 (215)
153 PF03767 Acid_phosphat_B: HAD 78.5 2 4.3E-05 42.1 3.3 69 272-346 70-148 (229)
154 TIGR01511 ATPase-IB1_Cu copper 78.0 3.9 8.4E-05 45.2 5.7 86 312-407 403-489 (562)
155 PRK11587 putative phosphatase; 77.7 1.2 2.6E-05 42.2 1.6 15 275-289 4-18 (218)
156 COG4359 Uncharacterized conser 76.0 6.8 0.00015 38.1 6.0 42 313-354 72-114 (220)
157 TIGR01548 HAD-SF-IA-hyp1 haloa 75.2 1.3 2.8E-05 41.3 1.0 14 276-289 2-15 (197)
158 TIGR01993 Pyr-5-nucltdase pyri 73.6 1.8 4E-05 39.7 1.5 14 276-289 2-15 (184)
159 PRK11590 hypothetical protein; 73.1 2 4.3E-05 40.9 1.7 39 313-351 94-134 (211)
160 TIGR02253 CTE7 HAD superfamily 72.2 2.1 4.6E-05 40.1 1.7 15 275-289 3-17 (221)
161 TIGR03351 PhnX-like phosphonat 71.1 2.2 4.7E-05 40.2 1.4 15 275-289 2-16 (220)
162 TIGR02009 PGMB-YQAB-SF beta-ph 70.9 2.1 4.6E-05 38.8 1.3 15 275-289 2-16 (185)
163 PRK13226 phosphoglycolate phos 70.8 2.1 4.5E-05 41.1 1.3 15 275-289 13-27 (229)
164 PRK13223 phosphoglycolate phos 70.2 2.3 4.9E-05 42.4 1.4 16 274-289 13-28 (272)
165 PRK11590 hypothetical protein; 70.1 6.7 0.00014 37.3 4.6 17 273-289 5-21 (211)
166 COG3769 Predicted hydrolase (H 69.7 15 0.00033 36.7 6.9 58 274-355 7-65 (274)
167 TIGR01422 phosphonatase phosph 69.2 2.7 5.9E-05 40.7 1.7 15 275-289 3-17 (253)
168 TIGR02252 DREG-2 REG-2-like, H 68.8 2.4 5.3E-05 39.3 1.2 14 276-289 2-15 (203)
169 PLN02770 haloacid dehalogenase 68.5 2.8 6E-05 40.9 1.6 15 275-289 23-37 (248)
170 PRK13478 phosphonoacetaldehyde 68.4 2.7 5.8E-05 41.3 1.5 16 274-289 4-19 (267)
171 PLN03243 haloacid dehalogenase 67.9 3.2 6.9E-05 41.3 1.9 19 271-289 21-39 (260)
172 PRK10748 flavin mononucleotide 67.9 3 6.5E-05 40.4 1.7 15 275-289 11-25 (238)
173 PRK14501 putative bifunctional 66.9 10 0.00022 43.2 5.9 62 271-350 489-552 (726)
174 TIGR01454 AHBA_synth_RP 3-amin 66.3 2.3 5E-05 39.7 0.6 13 277-289 1-13 (205)
175 TIGR01990 bPGM beta-phosphoglu 66.3 2.8 6.1E-05 38.0 1.1 13 277-289 2-14 (185)
176 PF05116 S6PP: Sucrose-6F-phos 66.1 9.2 0.0002 37.6 4.7 54 274-351 2-57 (247)
177 TIGR01545 YfhB_g-proteo haloac 65.9 14 0.00029 35.6 5.8 38 313-350 93-132 (210)
178 TIGR02471 sucr_syn_bact_C sucr 65.4 8.6 0.00019 36.9 4.3 53 277-353 2-54 (236)
179 PRK10826 2-deoxyglucose-6-phos 64.5 4 8.6E-05 38.7 1.8 16 274-289 7-22 (222)
180 TIGR01449 PGP_bact 2-phosphogl 64.2 2.7 5.8E-05 39.1 0.6 13 277-289 1-13 (213)
181 KOG3085 Predicted hydrolase (H 63.9 2.7 5.9E-05 41.8 0.6 87 311-400 111-202 (237)
182 TIGR01491 HAD-SF-IB-PSPlk HAD- 63.0 4.4 9.6E-05 37.1 1.7 16 274-289 4-19 (201)
183 TIGR02254 YjjG/YfnB HAD superf 62.8 3.8 8.2E-05 38.3 1.3 15 275-289 2-16 (224)
184 TIGR01493 HAD-SF-IA-v2 Haloaci 62.8 3.6 7.9E-05 37.1 1.1 13 277-289 2-14 (175)
185 PLN02779 haloacid dehalogenase 62.8 4 8.7E-05 41.0 1.5 16 274-289 40-55 (286)
186 TIGR01512 ATPase-IB2_Cd heavy 62.3 6 0.00013 43.4 2.9 87 312-407 360-448 (536)
187 TIGR01428 HAD_type_II 2-haloal 62.3 4 8.6E-05 37.8 1.3 15 275-289 2-16 (198)
188 PRK09449 dUMP phosphatase; Pro 62.2 3.9 8.4E-05 38.6 1.2 14 275-288 4-17 (224)
189 TIGR02247 HAD-1A3-hyp Epoxide 62.2 4.4 9.4E-05 38.0 1.6 15 275-289 3-17 (211)
190 PRK13222 phosphoglycolate phos 61.7 4 8.8E-05 38.2 1.3 15 275-289 7-21 (226)
191 TIGR01525 ATPase-IB_hvy heavy 60.8 7.6 0.00016 42.7 3.4 87 312-407 382-470 (556)
192 PRK10563 6-phosphogluconate ph 60.5 4.8 0.0001 38.0 1.5 16 274-289 4-19 (221)
193 PF13419 HAD_2: Haloacid dehal 60.5 4.2 9.1E-05 35.5 1.1 13 277-289 1-13 (176)
194 PF08235 LNS2: LNS2 (Lipin/Ned 59.8 22 0.00047 33.4 5.7 62 277-350 2-64 (157)
195 PF12710 HAD: haloacid dehalog 58.0 11 0.00023 34.2 3.4 47 315-361 86-138 (192)
196 TIGR01680 Veg_Stor_Prot vegeta 58.0 14 0.00031 37.6 4.5 91 273-364 100-197 (275)
197 TIGR01509 HAD-SF-IA-v3 haloaci 57.3 4.7 0.0001 36.2 0.9 13 277-289 2-14 (183)
198 PLN02575 haloacid dehalogenase 50.0 7.7 0.00017 41.2 1.1 18 272-289 129-146 (381)
199 PRK06698 bifunctional 5'-methy 49.9 6.5 0.00014 42.1 0.6 15 275-289 242-256 (459)
200 PF02358 Trehalose_PPase: Treh 49.0 26 0.00056 33.8 4.6 49 278-344 1-51 (235)
201 PLN02382 probable sucrose-phos 46.9 42 0.0009 35.9 6.1 17 272-288 7-23 (413)
202 PLN02205 alpha,alpha-trehalose 46.5 34 0.00074 40.1 5.7 60 271-350 593-654 (854)
203 PLN03063 alpha,alpha-trehalose 44.8 40 0.00087 39.1 5.9 64 271-349 504-569 (797)
204 PRK09552 mtnX 2-hydroxy-3-keto 44.7 12 0.00026 35.6 1.5 16 274-289 3-18 (219)
205 PF05822 UMPH-1: Pyrimidine 5' 44.0 27 0.00058 35.1 3.8 97 312-408 88-208 (246)
206 PF08484 Methyltransf_14: C-me 43.9 62 0.0014 30.1 6.1 66 315-411 53-120 (160)
207 COG1011 Predicted hydrolase (H 42.9 15 0.00032 34.4 1.8 16 274-289 4-19 (229)
208 TIGR01545 YfhB_g-proteo haloac 42.7 13 0.00029 35.6 1.5 16 274-289 5-20 (210)
209 PRK09456 ?-D-glucose-1-phospha 42.2 14 0.0003 34.4 1.5 14 276-289 2-15 (199)
210 PLN03064 alpha,alpha-trehalose 37.2 63 0.0014 38.4 6.0 71 271-350 588-660 (934)
211 KOG4549 Magnesium-dependent ph 36.7 2E+02 0.0044 26.6 7.8 120 274-395 5-133 (144)
212 KOG2134 Polynucleotide kinase 33.7 61 0.0013 34.8 4.7 57 273-339 74-130 (422)
213 TIGR01488 HAD-SF-IB Haloacid D 32.4 21 0.00046 32.0 1.0 13 277-289 2-14 (177)
214 TIGR02826 RNR_activ_nrdG3 anae 31.8 92 0.002 28.6 5.1 72 302-393 65-138 (147)
215 PF12710 HAD: haloacid dehalog 31.7 26 0.00056 31.7 1.5 13 277-289 1-13 (192)
216 PRK10671 copA copper exporting 30.9 40 0.00086 39.1 3.1 85 314-407 650-735 (834)
217 TIGR01490 HAD-SF-IB-hyp1 HAD-s 29.6 26 0.00057 32.3 1.1 13 277-289 2-14 (202)
218 PLN02177 glycerol-3-phosphate 29.1 44 0.00096 36.7 2.9 23 331-353 124-147 (497)
219 PF05761 5_nucleotid: 5' nucle 29.0 1.1E+02 0.0024 33.3 5.8 52 311-362 180-240 (448)
220 cd06537 CIDE_N_B CIDE_N domain 26.7 95 0.0021 26.2 3.8 15 274-288 39-53 (81)
221 cd06539 CIDE_N_A CIDE_N domain 25.4 1E+02 0.0022 25.8 3.8 15 274-288 40-54 (78)
222 PLN02919 haloacid dehalogenase 24.8 41 0.00089 40.3 1.9 17 273-289 74-90 (1057)
223 cd06536 CIDE_N_ICAD CIDE_N dom 23.9 1.1E+02 0.0025 25.7 3.8 16 273-288 41-56 (80)
224 cd02514 GT13_GLCNAC-TI GT13_GL 23.2 73 0.0016 33.3 3.1 40 311-350 6-52 (334)
225 COG4229 Predicted enolase-phos 23.1 61 0.0013 31.7 2.3 90 314-405 103-198 (229)
226 smart00266 CAD Domains present 22.9 1.1E+02 0.0024 25.4 3.4 15 274-288 38-52 (74)
227 cd06538 CIDE_N_FSP27 CIDE_N do 22.6 1.1E+02 0.0024 25.7 3.4 15 274-288 39-53 (79)
228 cd01615 CIDE_N CIDE_N domain, 22.6 1.2E+02 0.0026 25.4 3.7 16 273-288 39-54 (78)
229 PF00702 Hydrolase: haloacid d 21.2 56 0.0012 29.8 1.7 14 276-289 3-16 (215)
230 PF02017 CIDE-N: CIDE-N domain 20.8 60 0.0013 27.1 1.5 16 273-288 39-54 (78)
No 1
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=2e-48 Score=382.60 Aligned_cols=180 Identities=58% Similarity=0.964 Sum_probs=172.6
Q ss_pred CCccCCCCceEEEEeccccccccc--ccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHH
Q 012840 266 PKETQGRKSVTLVLDLDETLVHST--LEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYA 343 (455)
Q Consensus 266 P~~~~~~kk~tLVLDLDeTLVhS~--~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YA 343 (455)
|......+|++||||||||||||+ .++...++|.+++.+++..+.+||.+|||+++||+.++++||++||||+.+.||
T Consensus 81 ~~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~~~Ya 160 (262)
T KOG1605|consen 81 PLRLATVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTASLEVYA 160 (262)
T ss_pred CcccccCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 344457889999999999999999 777789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchhHHHHH
Q 012840 344 AQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLL 423 (455)
Q Consensus 344 d~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~~f~dd~~D~eLl~Ll 423 (455)
.+|++.||+.+++|++|+||++|.+.+|+|+|||+.+|+|+++||||||+|.+|.+||+|||||++|++++.|+||++|+
T Consensus 161 ~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~~d~~D~eLL~Ll 240 (262)
T KOG1605|consen 161 DPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWFDDPTDTELLKLL 240 (262)
T ss_pred HHHHHHccCCCCeeeeeecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccccCCChHHHHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCcHHHHHhhhCC
Q 012840 424 PFLDILADAEDVRPIIAKTFGS 445 (455)
Q Consensus 424 pfLe~L~~~~DVR~iL~k~f~~ 445 (455)
|||+.|+.++|||++++++||.
T Consensus 241 pfLe~L~~~~Dvr~~l~~~~~~ 262 (262)
T KOG1605|consen 241 PFLEALAFVDDVRPILARRFGN 262 (262)
T ss_pred HHHHHhcccccHHHHHHHhhcC
Confidence 9999999999999999999874
No 2
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=1.8e-40 Score=305.15 Aligned_cols=161 Identities=57% Similarity=0.931 Sum_probs=153.7
Q ss_pred ceEEEEecccccccccccccC-CCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCC
Q 012840 274 SVTLVLDLDETLVHSTLEYCD-DADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDP 352 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~-~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP 352 (455)
|++|||||||||||+++.+.. ..+|.+.+..++...++||++|||+.+||++|+++|||+|||++.+.||++|++.|||
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCc
Confidence 579999999999999988765 6788888888888889999999999999999999999999999999999999999999
Q ss_pred CCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchhHHHHHHHHHHccCC
Q 012840 353 DGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPFLDILADA 432 (455)
Q Consensus 353 ~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~~f~dd~~D~eLl~LlpfLe~L~~~ 432 (455)
.+.+|++++||++|....|.|.|||+.+|++++++|||||++..|..|++|||+|.+|.|+.+|++|++|++||+.|+.+
T Consensus 81 ~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~~l~~~L~~l~~~ 160 (162)
T TIGR02251 81 GGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELLNLIPFLEGLRFE 160 (162)
T ss_pred CCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 98899999999999998889999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 012840 433 ED 434 (455)
Q Consensus 433 ~D 434 (455)
+|
T Consensus 161 ~~ 162 (162)
T TIGR02251 161 DD 162 (162)
T ss_pred CC
Confidence 76
No 3
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=2.2e-38 Score=286.75 Aligned_cols=158 Identities=51% Similarity=0.856 Sum_probs=130.8
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCC
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDG 354 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~ 354 (455)
|+|||||||||||+........++... . ....++|++|||+++||++++++|||+|||++.+.||++|++.|||.+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~---~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~ 76 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKII---D-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNG 76 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEE---T-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTT
T ss_pred CEEEEeCCCcEEEEeecCCCCccccee---c-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhc
Confidence 699999999999998765544444322 2 566889999999999999999999999999999999999999999988
Q ss_pred CeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCC-CCchhHHHHHHHHHHccCCC
Q 012840 355 KLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDD-PSDCSLISLLPFLDILADAE 433 (455)
Q Consensus 355 ~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~~f~dd-~~D~eLl~LlpfLe~L~~~~ 433 (455)
.+|++++||++|....|.+.|||+.+|+++++||||||++.+|..+++|+|+|++|.++ +.|++|++|++||+.|+.++
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~~~D~~L~~l~~~L~~l~~~~ 156 (159)
T PF03031_consen 77 KLFSRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFGDTPNDRELLRLLPFLEELAKED 156 (159)
T ss_dssp SSEEEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----SSCHTT--HHHHHHHHHHHHHTHS
T ss_pred cccccccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccccCCCcchhHHHHHHHHHHHhCccc
Confidence 89999999999999888889999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CcH
Q 012840 434 DVR 436 (455)
Q Consensus 434 DVR 436 (455)
|||
T Consensus 157 Dvr 159 (159)
T PF03031_consen 157 DVR 159 (159)
T ss_dssp -CH
T ss_pred CCC
Confidence 998
No 4
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=100.00 E-value=2.1e-36 Score=286.96 Aligned_cols=158 Identities=23% Similarity=0.276 Sum_probs=136.3
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDIL 350 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~L 350 (455)
..+|++|||||||||||+.+.. ..+++.+|||+++||++++++|||+||||+++.||+.+++.|
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~~----------------~~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSPA----------------ETGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CCCCcEEEEeCCCceEcccccC----------------CCceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHHh
Confidence 5678999999999999974221 145789999999999999999999999999999999999999
Q ss_pred CCCC-CeeeeEEEcccce------eeCCc-eeecccccC------CCCCcEEEEECCchhhccCCCceeeeccccC----
Q 012840 351 DPDG-KLISRRVYRESCI------FSDGT-YTKDLTVLG------VDLAKVAIIDNSPQVFRLQVNNGIPIESWFD---- 412 (455)
Q Consensus 351 DP~~-~lfs~rL~Re~C~------~~~g~-yiKDLs~Lg------rdl~~vVIIDDsp~~~~~qp~NgIpI~~f~d---- 412 (455)
++.+ ..+..++++++|. ...|. ++|||+.++ +++++||||||+|.++.+||+|||+|++|++
T Consensus 82 ~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~~ 161 (195)
T TIGR02245 82 GVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHAN 161 (195)
T ss_pred cccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCCC
Confidence 8643 2355666778883 23454 599999873 3889999999999999999999999999995
Q ss_pred CCCchhHHHHHHHHHHccCCCCcHHHHHhhhC
Q 012840 413 DPSDCSLISLLPFLDILADAEDVRPIIAKTFG 444 (455)
Q Consensus 413 d~~D~eLl~LlpfLe~L~~~~DVR~iL~k~f~ 444 (455)
++.|+||++|+|||+.|+.++|||++++++|.
T Consensus 162 ~~~D~eL~~L~~yL~~la~~~Dvr~~~~~~w~ 193 (195)
T TIGR02245 162 RGTDQELLKLTQYLKTIAELEDFSSLDHKEWE 193 (195)
T ss_pred CcccHHHHHHHHHHHHHhcCcccchhhhcccc
Confidence 57999999999999999999999999998885
No 5
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.97 E-value=2.7e-32 Score=275.00 Aligned_cols=161 Identities=35% Similarity=0.638 Sum_probs=151.6
Q ss_pred ccCCCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHH
Q 012840 268 ETQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLL 347 (455)
Q Consensus 268 ~~~~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~IL 347 (455)
++..++++||||+|.++|||..|.. ..+|.+++|||++.||.+++++|||||||+....||.+|+
T Consensus 183 pPy~Qp~yTLVleledvLVhpdws~---------------~tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~gmt~~pl~ 247 (393)
T KOG2832|consen 183 PPYEQPPYTLVLELEDVLVHPDWSY---------------KTGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQGMTVFPLL 247 (393)
T ss_pred CcccCCCceEEEEeeeeEeccchhh---------------hcCceeccCchHHHHHHhhcccceEEEEecCCccchhhhH
Confidence 3457889999999999999998873 3678999999999999999999999999999999999999
Q ss_pred HHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchhHHHHHHHHH
Q 012840 348 DILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPFLD 427 (455)
Q Consensus 348 d~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~~f~dd~~D~eLl~LlpfLe 427 (455)
+.|||.| +|+++|||++|.+.+|..+|||+.|+||+.+||+||-.+.++.+||+|.|++++|.|+.+|+.|++|++||+
T Consensus 248 d~lDP~g-~IsYkLfr~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~Gn~dDt~L~dL~~FL~ 326 (393)
T KOG2832|consen 248 DALDPKG-YISYKLFRGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWSGNDDDTSLFDLLAFLE 326 (393)
T ss_pred hhcCCcc-eEEEEEecCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCCCCcccchhhhHHHHHH
Confidence 9999996 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccC--CCCcHHHHHhhhC
Q 012840 428 ILAD--AEDVRPIIAKTFG 444 (455)
Q Consensus 428 ~L~~--~~DVR~iL~k~f~ 444 (455)
.|+. ++|||++|+.+-+
T Consensus 327 ~ia~~~~eDvR~vL~~y~~ 345 (393)
T KOG2832|consen 327 YIAQQQVEDVRPVLQSYSQ 345 (393)
T ss_pred HHHHccHHHHHHHHHHhcc
Confidence 9985 7999999975444
No 6
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.97 E-value=3.8e-31 Score=242.71 Aligned_cols=138 Identities=31% Similarity=0.449 Sum_probs=117.8
Q ss_pred CCCceEEEEecccccccccccccCCCCce------------EEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCC
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFT------------FTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTAS 338 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~------------~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas 338 (455)
.++|++||||||+|||||+..+....... -...|......+++++|||+.+||+++++.|+++|||++
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~ 82 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMG 82 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCC
Confidence 57899999999999999987654322111 012233335678999999999999999999999999999
Q ss_pred cHHHHHHHHHHHCCCCCeeeeEE-EcccceeeCCceeeccc-ccCCCCCcEEEEECCchhhccCCCceeeecccc
Q 012840 339 QSIYAAQLLDILDPDGKLISRRV-YRESCIFSDGTYTKDLT-VLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWF 411 (455)
Q Consensus 339 ~~~YAd~ILd~LDP~~~lfs~rL-~Re~C~~~~g~yiKDLs-~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~~f~ 411 (455)
.+.||+++++.|||.+.+|.+|+ +|++|. |.+.|||+ .+|+++++||||||++.+|..||+|+|+|++|.
T Consensus 83 ~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~---~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~ 154 (156)
T TIGR02250 83 TRAYAQAIAKLIDPDGKYFGDRIISRDESG---SPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYN 154 (156)
T ss_pred cHHHHHHHHHHhCcCCCeeccEEEEeccCC---CCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcc
Confidence 99999999999999998997664 699995 78999995 569999999999999999999999999999995
No 7
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.95 E-value=6.6e-29 Score=255.56 Aligned_cols=177 Identities=45% Similarity=0.731 Sum_probs=166.9
Q ss_pred ccCCCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHH
Q 012840 268 ETQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLL 347 (455)
Q Consensus 268 ~~~~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~IL 347 (455)
.....++++|++|||+||+||....+...+|...+...+..+.|||.+|||+++||..++++|++++||++.+.||++|+
T Consensus 206 ~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~ 285 (390)
T COG5190 206 SKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVL 285 (390)
T ss_pred hcCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHH
Confidence 34456788999999999999999888888888888888888999999999999999999999999999999999999999
Q ss_pred HHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchhHHHHHHHHH
Q 012840 348 DILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPFLD 427 (455)
Q Consensus 348 d~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~~f~dd~~D~eLl~LlpfLe 427 (455)
+.|++.+ .|++++||++|....|.|+|||..+++++.+|||||++|.+|.+||+|+|+|.+|..++.|.+|++|++||+
T Consensus 286 d~l~~~k-~~~~~lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~~d~~d~el~~ll~~le 364 (390)
T COG5190 286 DILDSDK-VFSHRLFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWISDEHDDELLNLLPFLE 364 (390)
T ss_pred Hhccccc-eeehhhhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCcccccccchhhhhhccccc
Confidence 9999998 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccC--CCCcHHHHHhhhCC
Q 012840 428 ILAD--AEDVRPIIAKTFGS 445 (455)
Q Consensus 428 ~L~~--~~DVR~iL~k~f~~ 445 (455)
.|.. ..||+.+|..+-+.
T Consensus 365 ~L~~~~~~d~~~~l~~~~~~ 384 (390)
T COG5190 365 DLPDRDLKDVSSILQSRLEK 384 (390)
T ss_pred ccccccchhhhhhhhhhhHh
Confidence 9998 89999999776544
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.94 E-value=2.1e-26 Score=208.02 Aligned_cols=145 Identities=49% Similarity=0.859 Sum_probs=130.2
Q ss_pred CceEEEEecccccccccc---cccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHH
Q 012840 273 KSVTLVLDLDETLVHSTL---EYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDI 349 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~~---~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~ 349 (455)
+|++|||||||||||+.. .+.....+...+.+......+++++|||+.+||++|.+.|+++|||++.+.||+.+++.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 578999999999999963 22234456667777888889999999999999999999999999999999999999999
Q ss_pred HCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCch
Q 012840 350 LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDC 417 (455)
Q Consensus 350 LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~~f~dd~~D~ 417 (455)
+++.+.+|...+++++|...+..|.|+|+++|++++++|+|||++..|..+++|||+|++|.++++|.
T Consensus 81 l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~~d~ 148 (148)
T smart00577 81 LDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDPDDT 148 (148)
T ss_pred hCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCCCCC
Confidence 99976677999999999877667999999999999999999999999999999999999999998874
No 9
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.85 E-value=1.3e-21 Score=211.47 Aligned_cols=136 Identities=31% Similarity=0.432 Sum_probs=109.2
Q ss_pred CceEEEEecccccccccccccC--------CCCc-------eEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcC
Q 012840 273 KSVTLVLDLDETLVHSTLEYCD--------DADF-------TFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTA 337 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~~~~~~--------~~df-------~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTa 337 (455)
+++.||+|||.||+|+...+.. .... .+.+...+....+||++|||+++||++++++||++|||.
T Consensus 145 ~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTm 224 (635)
T KOG0323|consen 145 KKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTM 224 (635)
T ss_pred hcceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEec
Confidence 3479999999999999743211 0000 011111134456899999999999999999999999999
Q ss_pred CcHHHHHHHHHHHCCCCCeeeeEEE-cccceeeCCceeeccccc-CCCCCcEEEEECCchhhccCCCceeeecccc
Q 012840 338 SQSIYAAQLLDILDPDGKLISRRVY-RESCIFSDGTYTKDLTVL-GVDLAKVAIIDNSPQVFRLQVNNGIPIESWF 411 (455)
Q Consensus 338 s~~~YAd~ILd~LDP~~~lfs~rL~-Re~C~~~~g~yiKDLs~L-grdl~~vVIIDDsp~~~~~qp~NgIpI~~f~ 411 (455)
|.+.||..|++.|||.++||.+|++ |+. ....-.+||..+ .++.++||||||+..+|..++.|.|.|.+|.
T Consensus 225 g~R~YA~~i~~liDP~~~lF~dRIisrde---~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~ 297 (635)
T KOG0323|consen 225 GTRDYALEIAKLIDPEGKYFGDRIISRDE---SPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYP 297 (635)
T ss_pred cchHHHHHHHHHhCCCCccccceEEEecC---CCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeee
Confidence 9999999999999999999998887 766 344557788776 5688889999999999999999999999984
No 10
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.51 E-value=2.7e-07 Score=86.77 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=91.7
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecc---eeeeEEEeeCchHHHHHHHhh-cccEEEEEcCC-cHHHHHHHHHH
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNM---KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS-QSIYAAQLLDI 349 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~---~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas-~~~YAd~ILd~ 349 (455)
..+|||||+||..-.....-+.-+...-..++ ......+.++||+.++|++|. +.+.+.|.|++ ...++..+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~ 82 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGT 82 (174)
T ss_pred cEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHh
Confidence 37899999999765432222211110000110 112345788999999999998 67999999988 99999999999
Q ss_pred HCCC--C------CeeeeEEEcccceeeC--Cceeecccc-c--CCCCCcEEEEECCchhhccCCCceeeeccccC
Q 012840 350 LDPD--G------KLISRRVYRESCIFSD--GTYTKDLTV-L--GVDLAKVAIIDNSPQVFRLQVNNGIPIESWFD 412 (455)
Q Consensus 350 LDP~--~------~lfs~rL~Re~C~~~~--g~yiKDLs~-L--grdl~~vVIIDDsp~~~~~qp~NgIpI~~f~d 412 (455)
++.. + .+|...+..+...... ....+.+.. + |.+++++++|||++........+|+.+.-...
T Consensus 83 ~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~ 158 (174)
T TIGR01685 83 FEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPS 158 (174)
T ss_pred CCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCC
Confidence 9865 1 4787777654321110 011122222 2 57899999999999988877888988866643
No 11
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.41 E-value=1.5e-07 Score=83.33 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=75.2
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCC-cHHHHHHHHHHHCC
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS-QSIYAAQLLDILDP 352 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas-~~~YAd~ILd~LDP 352 (455)
+.||+||||||+..-..... .+-.. . .. .+.||+.++|++++ +.+.++|.|++ .+.++..+++.+.+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~-~~~~~----~-----~~-~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~ 69 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVG-EDPII----D-----LE-VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFED 69 (128)
T ss_pred CEEEEeCCCCCCCCCccccc-CCcch----h-----hH-HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccc
Confidence 36899999999876210000 00000 0 00 56899999999998 57999999999 99999999998762
Q ss_pred ------CCCeeeeEEEcccceeeCCceeecccccC--CCCCcEEEEECCchhh
Q 012840 353 ------DGKLISRRVYRESCIFSDGTYTKDLTVLG--VDLAKVAIIDNSPQVF 397 (455)
Q Consensus 353 ------~~~lfs~rL~Re~C~~~~g~yiKDLs~Lg--rdl~~vVIIDDsp~~~ 397 (455)
-..+|......+.- -....|.+-+..+| ..++++++|||++...
T Consensus 70 ~~~i~~l~~~f~~~~~~~~~-pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n~ 121 (128)
T TIGR01681 70 FGIIFPLAEYFDPLTIGYWL-PKSPRLVEIALKLNGVLKPKSILFVDDRPDNN 121 (128)
T ss_pred cccchhhHhhhhhhhhcCCC-cHHHHHHHHHHHhcCCCCcceEEEECCCHhHH
Confidence 12345544443221 11224566677789 9999999999998753
No 12
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=98.30 E-value=3.4e-07 Score=95.54 Aligned_cols=137 Identities=30% Similarity=0.444 Sum_probs=102.4
Q ss_pred CCCceEEEEecccccccccccccCC----------CCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDD----------ADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQS 340 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~----------~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~ 340 (455)
.+++..||.|+|.|.+|+...+... -.+.....+......++++.||++..|+...++.||+.+||.+.+
T Consensus 23 q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~ 102 (390)
T COG5190 23 QDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTR 102 (390)
T ss_pred cCcccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeeccc
Confidence 4567789999999999998665110 011111122233457889999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeccccc-CCCCCcEEEEECCchhhcc--CCCceeeecc
Q 012840 341 IYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVL-GVDLAKVAIIDNSPQVFRL--QVNNGIPIES 409 (455)
Q Consensus 341 ~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~L-grdl~~vVIIDDsp~~~~~--qp~NgIpI~~ 409 (455)
.||+.+..++||.|++|..+..-.+ ...+.-.|-++++ ..+...++++||.++.|.- --.|.++..+
T Consensus 103 ~~~~~~~~i~d~~g~~~~d~~~~~~--~~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~~~~v~~~~ 172 (390)
T COG5190 103 AYAERIAKIIDPTGKLFNDRILSRD--ESGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMNSNFVAKSP 172 (390)
T ss_pred cchhhhhhccccccccccccccccc--ccccchhhhhhhcCccccccccccccccccCCccchhhhhhcccc
Confidence 9999999999999999987776322 1334556777766 6788999999999999921 1245666665
No 13
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.18 E-value=5.8e-07 Score=84.84 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=78.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vV 388 (455)
+.+.||+.++|++|. +.+.++|.|++.+.++..+++.++-.. ||+..+..+.+... ...|.+-+..+|.++++++
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 159 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEAL 159 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEE
Confidence 567899999999998 579999999999999999999998775 89888876665432 2356677778899999999
Q ss_pred EEECCchhhccCCCceeeecc
Q 012840 389 IIDNSPQVFRLQVNNGIPIES 409 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~ 409 (455)
+|+|++.-+.....+|++...
T Consensus 160 ~iGDs~~Di~aa~~aG~~~i~ 180 (214)
T PRK13288 160 MVGDNHHDILAGKNAGTKTAG 180 (214)
T ss_pred EECCCHHHHHHHHHCCCeEEE
Confidence 999999877766677776543
No 14
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.17 E-value=6.1e-06 Score=74.60 Aligned_cols=138 Identities=16% Similarity=0.079 Sum_probs=96.0
Q ss_pred EEEEecccccccccccccCCCCceEEEE---ecc--eeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHH
Q 012840 276 TLVLDLDETLVHSTLEYCDDADFTFTVF---FNM--KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDI 349 (455)
Q Consensus 276 tLVLDLDeTLVhS~~~~~~~~df~~~i~---~~~--~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~ 349 (455)
.+|||+|+||... .+-..+.-|.. .+. ...+.-|.++|++.+||+++. ..|-+..+|.....-|-++|..
T Consensus 2 ~i~~d~d~t~wdh----h~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLra 77 (164)
T COG4996 2 AIVFDADKTLWDH----HNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRA 77 (164)
T ss_pred cEEEeCCCccccc----ccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHH
Confidence 5799999999653 22222211111 110 123567899999999999999 6799999999999999999999
Q ss_pred HCCCCCeeeeEEEcccceeeCCceeeccccc------CCCCCcEEEEECCchhh---ccCCCceeeeccccCCCCchhH
Q 012840 350 LDPDGKLISRRVYRESCIFSDGTYTKDLTVL------GVDLAKVAIIDNSPQVF---RLQVNNGIPIESWFDDPSDCSL 419 (455)
Q Consensus 350 LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~L------grdl~~vVIIDDsp~~~---~~qp~NgIpI~~f~dd~~D~eL 419 (455)
||..+ ||.+.....|-.. .....+-|..+ ...++++|.+||+...+ .....|.=.++.|.|-..-.+.
T Consensus 78 l~~~~-yFhy~ViePhP~K-~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~~~~~~~Di~c~~ei 154 (164)
T COG4996 78 LDLLQ-YFHYIVIEPHPYK-FLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVKCLEMWKDISCYSEI 154 (164)
T ss_pred hchhh-hEEEEEecCCChh-HHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCeeeeEeecchHHHHHH
Confidence 99986 8987777665421 11222223322 34788999999999776 4467788888999876433333
No 15
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.15 E-value=1.3e-06 Score=73.51 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=73.3
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHHCCCC
Q 012840 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDG 354 (455)
Q Consensus 276 tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~-YEIvIfTas~~~YAd~ILd~LDP~~ 354 (455)
++|||+||||+........ ...+..+|++.++|+++.+. +.++|.|++.+.++..+++.+....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~---------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~ 65 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE---------------IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDD 65 (139)
T ss_pred CeEEccCCceEccCccccc---------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCch
Confidence 4799999999876421100 22367899999999999964 9999999999999999999986543
Q ss_pred CeeeeEEEcccceee----------------C---CceeecccccCCCCCcEEEEECCchhhc
Q 012840 355 KLISRRVYRESCIFS----------------D---GTYTKDLTVLGVDLAKVAIIDNSPQVFR 398 (455)
Q Consensus 355 ~lfs~rL~Re~C~~~----------------~---g~yiKDLs~Lgrdl~~vVIIDDsp~~~~ 398 (455)
++...+..+..... . ..+..-+..++...+.+++|+|++.-..
T Consensus 66 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~ 127 (139)
T cd01427 66 -YFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIE 127 (139)
T ss_pred -hhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHHHH
Confidence 34444443322111 1 1122233445667889999999996543
No 16
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.15 E-value=2e-06 Score=75.34 Aligned_cols=113 Identities=20% Similarity=0.212 Sum_probs=77.3
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCc--------HHHHHHH
Q 012840 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ--------SIYAAQL 346 (455)
Q Consensus 276 tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~--------~~YAd~I 346 (455)
.|+||+||||++.... . .......+.||+.++|++|. +.|.++|.|.+. ..++..+
T Consensus 2 ~~~~D~dgtL~~~~~~--~-------------~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~ 66 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPY--V-------------DDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARR 66 (132)
T ss_pred EEEEeCCCceecCCCC--C-------------CCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHH
Confidence 7899999999964100 0 00112456899999999998 569999999999 8889999
Q ss_pred HHHHCCCCCeeeeEEEcccce-eeCCceeeccccc-CCCCCcEEEEEC-CchhhccCCCceee
Q 012840 347 LDILDPDGKLISRRVYRESCI-FSDGTYTKDLTVL-GVDLAKVAIIDN-SPQVFRLQVNNGIP 406 (455)
Q Consensus 347 Ld~LDP~~~lfs~rL~Re~C~-~~~g~yiKDLs~L-grdl~~vVIIDD-sp~~~~~qp~NgIp 406 (455)
++.++.. +...++...+. -....|.+-++.+ +.+++++++|+| ...-......+|+.
T Consensus 67 l~~~~l~---~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 67 LEELGVP---IDVLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred HHHCCCC---EEEEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCe
Confidence 9998764 22222322111 1123556667788 599999999999 56655544455554
No 17
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.12 E-value=1e-06 Score=84.90 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=76.0
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vV 388 (455)
+...||+.++|+.|.+ .|.++|-|++.+.++...++.++-.. +|+..+..+.....+ ..|.+-++++|.++++++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 5678999999999995 69999999999999999999887654 788887765443222 246677788999999999
Q ss_pred EEECCchhhccCCCceee
Q 012840 389 IIDNSPQVFRLQVNNGIP 406 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIp 406 (455)
+|+|++........+|+.
T Consensus 171 ~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 171 FIDDSEPILDAAAQFGIR 188 (224)
T ss_pred EEcCCHHHHHHHHHcCCe
Confidence 999999887777777885
No 18
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.04 E-value=1.5e-06 Score=86.82 Aligned_cols=95 Identities=11% Similarity=0.078 Sum_probs=71.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIID 391 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIID 391 (455)
+...||+.++|++|. +.+.+.|.|++.+.++..+++.++... +|+..+..+........+.+-+..++.+++++++|+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IG 219 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVG 219 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEEC
Confidence 556799999999998 569999999999999999999998765 787665543321111233444556788889999999
Q ss_pred CCchhhccCCCceeeec
Q 012840 392 NSPQVFRLQVNNGIPIE 408 (455)
Q Consensus 392 Dsp~~~~~qp~NgIpI~ 408 (455)
|++.-.......|+...
T Consensus 220 Ds~~Di~aA~~AG~~~I 236 (273)
T PRK13225 220 DETRDVEAARQVGLIAV 236 (273)
T ss_pred CCHHHHHHHHHCCCeEE
Confidence 99977765556677654
No 19
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.01 E-value=1.5e-05 Score=80.79 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=60.7
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeC-chHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQR-PHLKTFLERVAE-MFEVVIFTASQSIYAAQLLD 348 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lR-Pgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd 348 (455)
...+..+||||||||+.... -|.+| ||+.++|++|.+ ++.++|||++.+.++..+++
T Consensus 123 ~~~~kvIvFDLDgTLi~~~~---------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~ 181 (301)
T TIGR01684 123 FEPPHVVVFDLDSTLITDEE---------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMR 181 (301)
T ss_pred cccceEEEEecCCCCcCCCC---------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Confidence 45567999999999987632 26679 999999999996 59999999999999999999
Q ss_pred HHCCCCCeeeeEEEccc
Q 012840 349 ILDPDGKLISRRVYRES 365 (455)
Q Consensus 349 ~LDP~~~lfs~rL~Re~ 365 (455)
.++..+ +|...+..++
T Consensus 182 ~lGLd~-YFdvIIs~Gd 197 (301)
T TIGR01684 182 KVKLDR-YFDIIISGGH 197 (301)
T ss_pred HcCCCc-ccCEEEECCc
Confidence 999986 7766666443
No 20
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.97 E-value=3e-05 Score=78.67 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=84.4
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeC-chHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQR-PHLKTFLERVAE-MFEVVIFTASQSIYAAQLLD 348 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lR-Pgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd 348 (455)
...++.+|+||||||+.... -|.+| |++.++|++|.+ ++.++|||++.+.++..+++
T Consensus 125 ~~~~~~i~~D~D~TL~~~~~---------------------~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le 183 (303)
T PHA03398 125 WEIPHVIVFDLDSTLITDEE---------------------PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLK 183 (303)
T ss_pred eeeccEEEEecCCCccCCCC---------------------ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 35567999999999998632 16679 999999999995 69999999999999999999
Q ss_pred HHCCCCCeeeeEEEcccceee----------------CCceeeccc---cc--------------CCCC-CcEEEEECCc
Q 012840 349 ILDPDGKLISRRVYRESCIFS----------------DGTYTKDLT---VL--------------GVDL-AKVAIIDNSP 394 (455)
Q Consensus 349 ~LDP~~~lfs~rL~Re~C~~~----------------~g~yiKDLs---~L--------------grdl-~~vVIIDDsp 394 (455)
.++..+ +|...+..++.... ...+..|.. .| |..- +-+-+|||-+
T Consensus 184 ~lgL~~-yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~ 262 (303)
T PHA03398 184 ETKLEG-YFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTDVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLK 262 (303)
T ss_pred HcCCCc-cccEEEECCCcccccccceeecccceeEEecCceeEeCCcccCCCCCCeehHHHHHHcCcceeccEEEeccCc
Confidence 999875 77666654443221 122333333 22 3333 3356777777
Q ss_pred hhhccCCCceeeeccccCC
Q 012840 395 QVFRLQVNNGIPIESWFDD 413 (455)
Q Consensus 395 ~~~~~qp~NgIpI~~f~dd 413 (455)
.. .+.-+|-+.++..-.-
T Consensus 263 ~N-n~~YD~fv~v~rcp~P 280 (303)
T PHA03398 263 SN-NYSYDYFVNVKRCPEP 280 (303)
T ss_pred cc-CccceeEEEeeeCCCC
Confidence 54 3567777777766543
No 21
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.93 E-value=2.2e-06 Score=80.89 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=69.8
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEccccee-------------eCCceeeccc
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF-------------SDGTYTKDLT 378 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~-------------~~g~yiKDLs 378 (455)
+..+||+.+||+.+.+ .+.++|.|++...++..+++.++-.. +|...+.-++..+ ....+.+-++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 162 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR 162 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence 5689999999999995 69999999999999999999987765 6655443221110 0112333345
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeeecccc
Q 012840 379 VLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWF 411 (455)
Q Consensus 379 ~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~~f~ 411 (455)
.++.+++++++|+|++.-.......|+.+ .|.
T Consensus 163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i-~~~ 194 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDLSMIKAAGLGI-AFN 194 (219)
T ss_pred HcCCCHHHEEEEECCHHHHHHHHhCCCeE-EeC
Confidence 66888999999999987775555556666 343
No 22
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.90 E-value=1.3e-05 Score=74.22 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=76.5
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcH-------------
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQS------------- 340 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~------------- 340 (455)
+.|+||+||||+-.. .|. ...-.+.+-||+.++|++|. +.|.++|.|++..
T Consensus 2 ~~~~~D~Dgtl~~~~-------~~~--------~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~ 66 (176)
T TIGR00213 2 KAIFLDRDGTINIDH-------GYV--------HEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQ 66 (176)
T ss_pred CEEEEeCCCCEeCCC-------CCC--------CCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHH
Confidence 478999999998321 110 00112456799999999998 5699999999884
Q ss_pred --HHHHHHHHHHCCCCCeeeeEEEcc-----------cceee---CCceeecccccCCCCCcEEEEECCchhhccCCCce
Q 012840 341 --IYAAQLLDILDPDGKLISRRVYRE-----------SCIFS---DGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNG 404 (455)
Q Consensus 341 --~YAd~ILd~LDP~~~lfs~rL~Re-----------~C~~~---~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~Ng 404 (455)
.|...++..+... |...++.. .|... .+.|.+-++++|.+++++++|+|++.-......+|
T Consensus 67 ~~~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG 143 (176)
T TIGR00213 67 LTEWMDWSLAERDVD---LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAK 143 (176)
T ss_pred HHHHHHHHHHHcCCC---ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCC
Confidence 3444555544332 44444322 22211 23566777888999999999999998776666677
Q ss_pred eee
Q 012840 405 IPI 407 (455)
Q Consensus 405 IpI 407 (455)
+..
T Consensus 144 ~~~ 146 (176)
T TIGR00213 144 VKT 146 (176)
T ss_pred CcE
Confidence 754
No 23
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.88 E-value=8.6e-06 Score=73.35 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=77.1
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcH--------------
Q 012840 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQS-------------- 340 (455)
Q Consensus 276 tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~-------------- 340 (455)
+|+||+||||+......... ..-.+...||+.++|++|. +.|.++|.|++.+
T Consensus 2 ~~~~d~dgtl~~~~~~~~~~-------------~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~ 68 (147)
T TIGR01656 2 ALFLDRDGVINEDTVSDYPR-------------SLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAP 68 (147)
T ss_pred eEEEeCCCceeccCCcccCC-------------CHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHH
Confidence 78999999999875321100 0111457899999999998 6799999999874
Q ss_pred -HHHHHHHHHHCCCCCeeeeEEEc-----cc--ce-eeCCceeecccccCCCCCcEEEEECCchhhccCCCceeee
Q 012840 341 -IYAAQLLDILDPDGKLISRRVYR-----ES--CI-FSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 341 -~YAd~ILd~LDP~~~lfs~rL~R-----e~--C~-~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI 407 (455)
.++..+++.++.. +...++. +. +. -....|.+-+..+|.+++++++|.|++.-.......||..
T Consensus 69 ~~~~~~~l~~~~l~---~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 69 NGRVLELLRQLGVA---VDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAA 141 (147)
T ss_pred HHHHHHHHHhCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCE
Confidence 5677777777654 2112221 11 11 1123455566778999999999999987666555566553
No 24
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.83 E-value=2.9e-06 Score=81.84 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=85.6
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~-YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vV 388 (455)
+...||+.+||+.|.+. .-+++-|++.+..+..+++.+...+ +|..++++++.... +..|.+-..+||.+++++|
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 78899999999999965 9999999999999999999999886 89999988776544 3478899999999999999
Q ss_pred EEECCchhhccCCCceeeeccccC
Q 012840 389 IIDNSPQVFRLQVNNGIPIESWFD 412 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~f~d 412 (455)
+|+|++.-......-|+.+-.+.+
T Consensus 164 viEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 164 VVEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred EEecchhHHHHHHHCCCEEEEecC
Confidence 999999877666667777777765
No 25
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.83 E-value=2.5e-05 Score=72.27 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=86.2
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCC---------------
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTAS--------------- 338 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas--------------- 338 (455)
+.|+||.||||++.... .| . ....-++..-||+.++|++|.+ .|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~-----~~--~-----~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~ 69 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS-----DF--Q-----VDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDG 69 (161)
T ss_pred CEEEEeCCCCccccCCC-----cc--c-----cCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHH
Confidence 47899999999884311 01 0 0011136778999999999995 7999999996
Q ss_pred cHHHHHHHHHHHCCCCCeeeeEEEc-----ccceeeC---CceeecccccCCCCCcEEEEECCchhhccCCCceeeeccc
Q 012840 339 QSIYAAQLLDILDPDGKLISRRVYR-----ESCIFSD---GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESW 410 (455)
Q Consensus 339 ~~~YAd~ILd~LDP~~~lfs~rL~R-----e~C~~~~---g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~~f 410 (455)
...++..+++.++.. |...++. +.+.... +.+..-++.++.+++++++|.|+..-......+|+..-.+
T Consensus 70 ~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~ 146 (161)
T TIGR01261 70 PHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQY 146 (161)
T ss_pred HHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEE
Confidence 466888888888875 6666653 4443321 2344455667889999999999987666666778876655
Q ss_pred cC
Q 012840 411 FD 412 (455)
Q Consensus 411 ~d 412 (455)
..
T Consensus 147 ~~ 148 (161)
T TIGR01261 147 DE 148 (161)
T ss_pred Ch
Confidence 43
No 26
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.82 E-value=5.8e-05 Score=70.88 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=62.8
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecce------eeeEEEeeCchHHHHHHHhh-cccEEEEEcC-CcHHHHHH
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMK------EHTVYVKQRPHLKTFLERVA-EMFEVVIFTA-SQSIYAAQ 345 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~------~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTa-s~~~YAd~ 345 (455)
++.+|||||.||...-.... ...|+..... ..+.-|.+-|++.+.|+.|. ...+|.+.|. ..+..|.+
T Consensus 3 PklvvFDLD~TlW~~~~~~~----~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~ 78 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTH----VGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARE 78 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTS----S-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhc----cCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHH
Confidence 45899999999976542222 1112222111 23456899999999999999 5799999995 56889999
Q ss_pred HHHHHCCC---------CCeeeeEEEcccceeeCCce---eecc-cccCCCCCcEEEEECCchhh
Q 012840 346 LLDILDPD---------GKLISRRVYRESCIFSDGTY---TKDL-TVLGVDLAKVAIIDNSPQVF 397 (455)
Q Consensus 346 ILd~LDP~---------~~lfs~rL~Re~C~~~~g~y---iKDL-s~Lgrdl~~vVIIDDsp~~~ 397 (455)
+|+.|+.. ..+|++.- ...|.- .+.| +..|.+.+.++++||.....
T Consensus 79 ~L~~l~i~~~~~~~~~~~~~F~~~e------I~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~ 137 (169)
T PF12689_consen 79 LLKLLEIDDADGDGVPLIEYFDYLE------IYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRNI 137 (169)
T ss_dssp HHHHTT-C----------CCECEEE------ESSS-HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred HHHhcCCCccccccccchhhcchhh------eecCchHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence 99999877 01443311 122322 2222 24589999999999998654
No 27
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.78 E-value=3e-05 Score=78.75 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=74.7
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeE-EEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHH--
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTV-YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDI-- 349 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v-~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~-- 349 (455)
+++||+|||+||+.-..-... ..++ +....|++.++|+.|. +.+.+.|.|......|..+++.
T Consensus 3 ~k~~v~DlDnTlw~gv~~e~g-------------~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~ 69 (320)
T TIGR01686 3 LKVLVLDLDNTLWGGVLGEDG-------------IDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRK 69 (320)
T ss_pred eEEEEEcCCCCCCCCEEccCC-------------ccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCc
Confidence 579999999999754311100 0011 1224789999999998 6799999999999999999998
Q ss_pred --HCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhh
Q 012840 350 --LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVF 397 (455)
Q Consensus 350 --LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~ 397 (455)
+.... +|...... ..-....+.+-+..+|.+++.+|+|||++...
T Consensus 70 ~~~~~~~-~f~~~~~~--~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~ 116 (320)
T TIGR01686 70 DFILQAE-DFDARSIN--WGPKSESLRKIAKKLNLGTDSFLFIDDNPAER 116 (320)
T ss_pred cccCcHH-HeeEEEEe--cCchHHHHHHHHHHhCCCcCcEEEECCCHHHH
Confidence 55443 45443221 00112244555677899999999999999755
No 28
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.78 E-value=3.5e-05 Score=71.43 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=76.5
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCcH------------
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQS------------ 340 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~------------ 340 (455)
.+.|+||+||||+-.... | ..... .+...||+.++|++|++ .|.++|.|++..
T Consensus 3 ~~~~~~d~~~t~~~~~~~------~------~~~~~--~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~ 68 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDG------Y------VKSPD--EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLN 68 (181)
T ss_pred ccEEEEECCCCcccCCcc------c------cCCHH--HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHH
Confidence 358999999998654211 1 01111 24578999999999995 599999998863
Q ss_pred ---HHHHHHHHHHCCCCCeeeeEEEcccc-----eee---CCceeecccccCCCCCcEEEEECCchhhccCCCceee
Q 012840 341 ---IYAAQLLDILDPDGKLISRRVYRESC-----IFS---DGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 406 (455)
Q Consensus 341 ---~YAd~ILd~LDP~~~lfs~rL~Re~C-----~~~---~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIp 406 (455)
.+...+++.++- +|...++...+ ... ...|.+-+..+|.+++++++|+|++.-.......|+.
T Consensus 69 ~~~~~~~~~l~~~g~---~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~ 142 (181)
T PRK08942 69 ALHEKMDWSLADRGG---RLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVT 142 (181)
T ss_pred HHHHHHHHHHHHcCC---ccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCe
Confidence 334445555432 36655554322 111 2355677778899999999999999766555556654
No 29
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.77 E-value=3.3e-06 Score=78.76 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=67.2
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCC---CeeeeEEEcccceeeCCceeecccccCCCCCcEEE
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDG---KLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~---~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVI 389 (455)
+...||+.++|++|.+.|.+++-|++.......+++.+...+ .+|+..+..+........|.+-++.+| ++.+|+
T Consensus 73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~--~~~~v~ 150 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG--DRVVCF 150 (197)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC--CCcEEE
Confidence 668999999999999878887777766655555666654332 245666665554322334555566778 678999
Q ss_pred EECCchhhccCCCc--eeeeccc
Q 012840 390 IDNSPQVFRLQVNN--GIPIESW 410 (455)
Q Consensus 390 IDDsp~~~~~qp~N--gIpI~~f 410 (455)
|||++........+ ||+.--+
T Consensus 151 vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 151 VDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred eCCCHHHHHHHHHHHcCCcEEEe
Confidence 99999988777777 8876655
No 30
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.70 E-value=2.6e-05 Score=77.51 Aligned_cols=128 Identities=12% Similarity=0.087 Sum_probs=91.8
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHH
Q 012840 272 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDIL 350 (455)
Q Consensus 272 ~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~L 350 (455)
.++..+++|+||||....... ..++. ........|++.++|+.+.+ .+.++|.|+....+++.+++.|
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~--~~~~~---------~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l 224 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRS--PYDWT---------KVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL 224 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCC--ccchh---------hcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH
Confidence 345789999999998754211 11111 01124569999999999984 6999999999999999999999
Q ss_pred CCCCCeeeeEEEccc-------ceeeC---CceeecccccCC-CCCcEEEEECCchhhccCCCceeeeccc
Q 012840 351 DPDGKLISRRVYRES-------CIFSD---GTYTKDLTVLGV-DLAKVAIIDNSPQVFRLQVNNGIPIESW 410 (455)
Q Consensus 351 DP~~~lfs~rL~Re~-------C~~~~---g~yiKDLs~Lgr-dl~~vVIIDDsp~~~~~qp~NgIpI~~f 410 (455)
+..+.+|+..+..+. +.... ..+.+.|..++. +.+.++.|||++........+||++-..
T Consensus 225 ~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 225 RQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred HHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence 988767766655552 11111 123445566677 6799999999999988888888886554
No 31
>PLN02940 riboflavin kinase
Probab=97.63 E-value=7.6e-06 Score=85.38 Aligned_cols=97 Identities=10% Similarity=0.081 Sum_probs=77.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHH-HHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLD-ILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKV 387 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd-~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~v 387 (455)
+...||+.++|++|. +.+.++|-|++.+.++..+++ .++-. .+|+..+..+++...+ ..|.+-++.+|..++++
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence 567899999999998 569999999999999999887 55544 4899988888765332 35677788889999999
Q ss_pred EEEECCchhhccCCCceeeeccc
Q 012840 388 AIIDNSPQVFRLQVNNGIPIESW 410 (455)
Q Consensus 388 VIIDDsp~~~~~qp~NgIpI~~f 410 (455)
++|+|++.-.......|+.....
T Consensus 171 l~VGDs~~Di~aA~~aGi~~I~v 193 (382)
T PLN02940 171 LVIEDSLPGVMAGKAAGMEVIAV 193 (382)
T ss_pred EEEeCCHHHHHHHHHcCCEEEEE
Confidence 99999998776666667664433
No 32
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.60 E-value=1.6e-05 Score=70.96 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=63.2
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee--CCceeecccccCCCCCcEEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS--DGTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~--~g~yiKDLs~Lgrdl~~vVI 389 (455)
....||+.++|+.|. +.+.++|.|++.+.++..+++.+ . ..+|...+..++.... ...|.+-+..+|.+. ++++
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEE
Confidence 445699999999997 67999999999999999999996 2 3467777766655311 124556677788888 9999
Q ss_pred EECCchhh
Q 012840 390 IDNSPQVF 397 (455)
Q Consensus 390 IDDsp~~~ 397 (455)
|.|++.-.
T Consensus 140 iGDs~~Di 147 (154)
T TIGR01549 140 VGDNLNDI 147 (154)
T ss_pred EeCCHHHH
Confidence 99997543
No 33
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.53 E-value=7.4e-05 Score=73.60 Aligned_cols=132 Identities=12% Similarity=0.100 Sum_probs=77.1
Q ss_pred CCCceEEEEecccccccccccc-c-----CCCCceE--EEEecce---eeeEEEeeCchHHHHHHHhh-cccEEEEEcCC
Q 012840 271 GRKSVTLVLDLDETLVHSTLEY-C-----DDADFTF--TVFFNMK---EHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS 338 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~-~-----~~~df~~--~i~~~~~---~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas 338 (455)
.++++.++|||||||++|+..- . ...++.. .-.+... ...-.....|++.+||+++. +.+.++|.|+.
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr 139 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGR 139 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCC
Confidence 4556799999999999997411 0 1100100 0000000 00112344455999999998 56999999998
Q ss_pred ----cHHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeee
Q 012840 339 ----QSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 339 ----~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI 407 (455)
...+++.+++.++..+ +|...+..+.... ..+-+. ..+ ....-++.|-|+..-+......|+..
T Consensus 140 ~~~k~~~~a~~ll~~lGi~~-~f~~i~~~d~~~~--~Kp~~~-~~l-~~~~i~i~vGDs~~DI~aAk~AGi~~ 207 (237)
T TIGR01672 140 TPGKTDTVSKTLAKNFHIPA-MNPVIFAGDKPGQ--YQYTKT-QWI-QDKNIRIHYGDSDNDITAAKEAGARG 207 (237)
T ss_pred CCCcCHHHHHHHHHHhCCch-heeEEECCCCCCC--CCCCHH-HHH-HhCCCeEEEeCCHHHHHHHHHCCCCE
Confidence 6789999999998865 6655444443221 111121 112 12233788999887765555566553
No 34
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.49 E-value=0.00018 Score=66.73 Aligned_cols=107 Identities=18% Similarity=0.267 Sum_probs=68.1
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHH-----------
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSI----------- 341 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~----------- 341 (455)
+++++||+||||+-...... | ......| ..+-||+.+.|++|. +.|.++|.|++...
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~----~------~~~~~~~-~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~ 81 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKV----F------PTSASDW-RFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFK 81 (166)
T ss_pred CcEEEEeCCCceEecCCCCc----c------cCChHHe-EEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHH
Confidence 35789999999996532100 0 0001111 124599999999997 68999999998763
Q ss_pred -HHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccC--CCCCcEEEEECCc
Q 012840 342 -YAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLG--VDLAKVAIIDNSP 394 (455)
Q Consensus 342 -YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lg--rdl~~vVIIDDsp 394 (455)
++..+++.++.. +...+..+..... .+.+..-+..+| .+++++++|.|++
T Consensus 82 ~~i~~~l~~~gl~---~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 82 NKIEAFLEKLKVP---IQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred HHHHHHHHHcCCC---EEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 567788888763 2223332221111 223444456677 8899999999986
No 35
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.40 E-value=0.00013 Score=64.47 Aligned_cols=94 Identities=18% Similarity=0.316 Sum_probs=76.8
Q ss_pred EEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcE
Q 012840 312 YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKV 387 (455)
Q Consensus 312 ~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~v 387 (455)
.....||+.++|+.++ +.+.++|.|.+...++..+++.+... .+|+..++.++....+ ..|.+-++.+|.+++++
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~ 153 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEI 153 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGE
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccccccccchhhhhhhHHHHHHHHHHHcCCCcceE
Confidence 5889999999999999 88999999999999999999999877 4898888876654332 35667777889999999
Q ss_pred EEEECCchhhccCCCceee
Q 012840 388 AIIDNSPQVFRLQVNNGIP 406 (455)
Q Consensus 388 VIIDDsp~~~~~qp~NgIp 406 (455)
++|||++.........|+.
T Consensus 154 ~~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 154 LFVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EEEESSHHHHHHHHHTTSE
T ss_pred EEEeCCHHHHHHHHHcCCe
Confidence 9999999766544444543
No 36
>PRK06769 hypothetical protein; Validated
Probab=97.37 E-value=0.00014 Score=67.48 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=71.9
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHH-----HHHHHH
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIY-----AAQLLD 348 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~Y-----Ad~ILd 348 (455)
..|+||+||||.- |.. +. +.-.+.+-||+.++|++|. +.|.++|.|++.... ......
T Consensus 5 ~~~~~d~d~~~~~--~~~-----~~---------~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~ 68 (173)
T PRK06769 5 QAIFIDRDGTIGG--DTT-----IH---------YPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQ 68 (173)
T ss_pred cEEEEeCCCcccC--CCC-----CC---------CHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHH
Confidence 3789999999941 110 00 0002456799999999998 579999999876421 012233
Q ss_pred HHCCCCCeeeeEEE-----ccccee---eCCceeecccccCCCCCcEEEEECCchhhccCCCceeeecc
Q 012840 349 ILDPDGKLISRRVY-----RESCIF---SDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIES 409 (455)
Q Consensus 349 ~LDP~~~lfs~rL~-----Re~C~~---~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~~ 409 (455)
.+...+ |...++ .+.... ..+.|.+-++.+|.+++++++|+|++.-.......|+...-
T Consensus 69 ~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~ 135 (173)
T PRK06769 69 ELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTIL 135 (173)
T ss_pred HHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEE
Confidence 333222 323232 111111 12356777888899999999999999766555555665543
No 37
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.36 E-value=0.00018 Score=65.61 Aligned_cols=87 Identities=11% Similarity=0.191 Sum_probs=60.1
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeCC-----------------cee
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG-----------------TYT 374 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~g-----------------~yi 374 (455)
+.++||+.++|+.+.+ .+.++|.|++...+++.+++.++-.. +|...+..+...-..| ...
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 6899999999999985 69999999999999999999987654 6766664322111111 111
Q ss_pred e--cccccCCC-CCcEEEEECCchhhccC
Q 012840 375 K--DLTVLGVD-LAKVAIIDNSPQVFRLQ 400 (455)
Q Consensus 375 K--DLs~Lgrd-l~~vVIIDDsp~~~~~q 400 (455)
| -+..+... .+++|+|+|+..-+...
T Consensus 150 K~~~~~~~~~~~~~~~i~iGD~~~D~~aa 178 (188)
T TIGR01489 150 KGKVIHKLSEPKYQHIIYIGDGVTDVCPA 178 (188)
T ss_pred HHHHHHHHHhhcCceEEEECCCcchhchH
Confidence 2 22233333 78899999998765443
No 38
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.29 E-value=0.0002 Score=64.87 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=71.1
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vV 388 (455)
+.+.||+.+||+++++ .|.++|.|++...+ ..++..++..+ +|...++.+.....+ ..|.+-++.+|.++++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 161 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL 161 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence 5678999999999985 79999999999998 76666677665 788888765544322 356666778899999999
Q ss_pred EEECCchhhccCCCceee
Q 012840 389 IIDNSPQVFRLQVNNGIP 406 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIp 406 (455)
+|+|++.........|+.
T Consensus 162 ~vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 162 FVDDSPAGIEAAKAAGMH 179 (183)
T ss_pred EEcCCHHHHHHHHHcCCE
Confidence 999999766555555554
No 39
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.22 E-value=0.00051 Score=63.64 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=75.5
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCc-HHHHHHHHHHH
Q 012840 273 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQ-SIYAAQLLDIL 350 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas~-~~YAd~ILd~L 350 (455)
+-..||+|+||||..... ...-||+.++|++|.+ .+.++|.|++. ...+..+++.+
T Consensus 24 ~v~~vv~D~Dgtl~~~~~----------------------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~ 81 (170)
T TIGR01668 24 GIKGVVLDKDNTLVYPDH----------------------NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL 81 (170)
T ss_pred CCCEEEEecCCccccCCC----------------------CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc
Confidence 445899999999986421 2346999999999985 59999999998 68888888776
Q ss_pred CCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCch-hhccCCCceeeeccc
Q 012840 351 DPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQ-VFRLQVNNGIPIESW 410 (455)
Q Consensus 351 DP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~-~~~~qp~NgIpI~~f 410 (455)
+... + + ....-....|.+-++.+|.+.+++++|+|+.. -......+|+..--+
T Consensus 82 gl~~-~-----~-~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v 135 (170)
T TIGR01668 82 GIPV-L-----P-HAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILV 135 (170)
T ss_pred CCEE-E-----c-CCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEE
Confidence 5421 1 1 11111233455667778989999999999983 454444556554433
No 40
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.22 E-value=7.1e-05 Score=69.83 Aligned_cols=94 Identities=18% Similarity=0.164 Sum_probs=62.4
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEc-ccceee-----CC-ceeecccccCCCCC
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYR-ESCIFS-----DG-TYTKDLTVLGVDLA 385 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~R-e~C~~~-----~g-~yiKDLs~Lgrdl~ 385 (455)
+..+||+.+||+.+.+.+.++|.|++...+++.+++.++... +|...+.- +..... .+ ....-+..++....
T Consensus 67 ~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~ 145 (205)
T PRK13582 67 LDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGY 145 (205)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceEEECCCCeEECccccccchHHHHHHHHHHhCC
Confidence 567899999999999669999999999999999999988654 66554432 111110 00 11111223344557
Q ss_pred cEEEEECCchhhccCCCceeee
Q 012840 386 KVAIIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 386 ~vVIIDDsp~~~~~qp~NgIpI 407 (455)
.++.|-|+..-.......|+.+
T Consensus 146 ~~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 146 RVIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred eEEEEeCCHHHHHHHHhCCCCE
Confidence 8999999997654443444444
No 41
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.21 E-value=0.00031 Score=69.68 Aligned_cols=98 Identities=11% Similarity=0.177 Sum_probs=81.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vV 388 (455)
+.+.||+.++|++|. +.|.++|.|++...++..+++.++-.+ ||+..+..+.+...+ ..|.+-+.++|.++++++
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l 186 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCI 186 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeE
Confidence 567899999999998 569999999999999999999998665 899888877664332 356778888999999999
Q ss_pred EEECCchhhccCCCceeeecccc
Q 012840 389 IIDNSPQVFRLQVNNGIPIESWF 411 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~f~ 411 (455)
+|+|++.-.......|+.+....
T Consensus 187 ~IgDs~~Di~aA~~aG~~~i~v~ 209 (260)
T PLN03243 187 VFGNSNSSVEAAHDGCMKCVAVA 209 (260)
T ss_pred EEcCCHHHHHHHHHcCCEEEEEe
Confidence 99999988877777777665443
No 42
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.20 E-value=0.0012 Score=66.71 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=57.8
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEee-CchHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHH
Q 012840 272 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQ-RPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDI 349 (455)
Q Consensus 272 ~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~l-RPgl~eFLe~Lsk~-YEIvIfTas~~~YAd~ILd~ 349 (455)
.++-.+|+|||.|||-.... +++ =|.+.+.|..|.+. .-+++||.|.++++..-++.
T Consensus 120 ~~phVIVfDlD~TLItd~~~---------------------v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~ 178 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEGD---------------------VRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKE 178 (297)
T ss_pred CCCcEEEEECCCcccccCCc---------------------cccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHH
Confidence 44559999999999976422 222 38889999999965 59999999999999999999
Q ss_pred HCCCCCeeeeEEEcc
Q 012840 350 LDPDGKLISRRVYRE 364 (455)
Q Consensus 350 LDP~~~lfs~rL~Re 364 (455)
++..+ +|+..|.+.
T Consensus 179 ~~L~~-~Fd~ii~~G 192 (297)
T PF05152_consen 179 LKLEG-YFDIIICGG 192 (297)
T ss_pred hCCcc-ccEEEEeCC
Confidence 99885 898888754
No 43
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.19 E-value=0.00063 Score=70.82 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=80.6
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCC-------------
Q 012840 273 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTAS------------- 338 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas------------- 338 (455)
+++.|+||-||||+........ ....-.+.+.||+.++|++|.+ .|.++|.|+.
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~------------~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l 68 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQ------------VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDF 68 (354)
T ss_pred CCcEEEEeCCCCccCCCCcccc------------ccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHH
Confidence 3579999999999986421100 1112237789999999999985 6999999995
Q ss_pred --cHHHHHHHHHHHCCCCCeeeeEEEc-----ccceeeC---CceeecccccCCCCCcEEEEECCchhhccCCCceeeec
Q 012840 339 --QSIYAAQLLDILDPDGKLISRRVYR-----ESCIFSD---GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 408 (455)
Q Consensus 339 --~~~YAd~ILd~LDP~~~lfs~rL~R-----e~C~~~~---g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~ 408 (455)
...++..+++.++. +|...++. +.|.... +.+..-+..++.+++++++|-|+..-......+|+..-
T Consensus 69 ~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I 145 (354)
T PRK05446 69 DPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGI 145 (354)
T ss_pred hhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEE
Confidence 34566666666654 35555543 3443221 12333345568899999999999876666666777644
No 44
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.18 E-value=0.00042 Score=67.65 Aligned_cols=97 Identities=16% Similarity=0.251 Sum_probs=80.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vV 388 (455)
+.+.||+.++|++|. +.|.++|-|++.+.+++.+++.++... ||+..+..+.+... ...|.+-+..+|.++++++
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l 185 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTF 185 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEE
Confidence 667899999999997 579999999999999999999998775 89888887765432 2356777888999999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 012840 389 IIDNSPQVFRLQVNNGIPIESW 410 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~f 410 (455)
+|+|++.-......+|++....
T Consensus 186 ~vgDs~~Di~aA~~aGi~~i~v 207 (248)
T PLN02770 186 VFEDSVSGIKAGVAAGMPVVGL 207 (248)
T ss_pred EEcCCHHHHHHHHHCCCEEEEE
Confidence 9999998776666778876544
No 45
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.16 E-value=0.00033 Score=65.96 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=75.2
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vV 388 (455)
+.+.||+.+||++|.+ .+.++|.|++...++...++.++... +|+..+..+.....+ ..|.+-++.+|.+++++|
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 171 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAV 171 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEE
Confidence 6789999999999985 59999999999999999999998765 888888776654322 356777888999999999
Q ss_pred EEECCc-hhhccCCCceeeec
Q 012840 389 IIDNSP-QVFRLQVNNGIPIE 408 (455)
Q Consensus 389 IIDDsp-~~~~~qp~NgIpI~ 408 (455)
+|.|++ .-+......|+...
T Consensus 172 ~igDs~~~di~~A~~aG~~~i 192 (221)
T TIGR02253 172 MVGDRLDKDIKGAKNLGMKTV 192 (221)
T ss_pred EECCChHHHHHHHHHCCCEEE
Confidence 999998 45544445555543
No 46
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.12 E-value=0.00037 Score=65.31 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=78.1
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vV 388 (455)
+...||+.++|++|. +.+.++|.|.+...++..+++.++..+ +|+..+..+++... ...|.+-+..+|.++++++
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 677899999999998 579999999999999999999998875 78877776654322 2345666778899999999
Q ss_pred EEECCchhhccCCCceeeecc
Q 012840 389 IIDNSPQVFRLQVNNGIPIES 409 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~ 409 (455)
+|+|++.-+.....+|++...
T Consensus 153 ~igD~~~Di~aA~~~Gi~~i~ 173 (205)
T TIGR01454 153 MVGDAVTDLASARAAGTATVA 173 (205)
T ss_pred EEcCCHHHHHHHHHcCCeEEE
Confidence 999999877666777887543
No 47
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.12 E-value=0.00025 Score=65.43 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=73.2
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEccccee-------eCCceeecccccCCCCC
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF-------SDGTYTKDLTVLGVDLA 385 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~-------~~g~yiKDLs~Lgrdl~ 385 (455)
+...||+.++|++|. +.++|.|++...++..+++.++... +|+..+..+.... ....|.+-+..+|.+++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 159 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE 159 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence 456799999999998 6899999999999999999998654 8888877655332 22356677788899999
Q ss_pred cEEEEECCchhhccCCCceeee
Q 012840 386 KVAIIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 386 ~vVIIDDsp~~~~~qp~NgIpI 407 (455)
++++|+|++.........|+..
T Consensus 160 ~~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 160 RAIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred ceEEEeCCHHHHHHHHHcCCEE
Confidence 9999999997666555666653
No 48
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.09 E-value=0.00033 Score=67.23 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=72.6
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vV 388 (455)
...-||+.+.|..++ +.|.+.|.|+.....++.+++.++-.. ||+..+..+.....+ ..+..-+..+|.+++++|
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 467899999999999 679999999999999999999998886 787766633332222 133455567788877999
Q ss_pred EEECCchhhccCCCceeee
Q 012840 389 IIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI 407 (455)
+|=|+..-.......|++.
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~ 185 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPA 185 (220)
T ss_pred EECCCHHHHHHHHHcCCCE
Confidence 9999998776666666553
No 49
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.08 E-value=0.0014 Score=64.66 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=75.1
Q ss_pred CCCceEEEEeccccccccccc-ccCCCCceEE--EEecc--------eeeeEEEeeCchHHHHHHHhh-cccEEEEEcC-
Q 012840 271 GRKSVTLVLDLDETLVHSTLE-YCDDADFTFT--VFFNM--------KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTA- 337 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~-~~~~~df~~~--i~~~~--------~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTa- 337 (455)
.++++.++||+|||+++++.. ......|.-. -++.. .....+....||+.+||+++. +.++|++-|+
T Consensus 60 ~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR 139 (237)
T PRK11009 60 GRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGR 139 (237)
T ss_pred CCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCC
Confidence 455679999999999997521 1111111000 00000 001234556667999999995 7899999998
Q ss_pred ---CcHHHHHHHHHHHCC-CCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeee
Q 012840 338 ---SQSIYAAQLLDILDP-DGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 338 ---s~~~YAd~ILd~LDP-~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI 407 (455)
....+++.+++.++. ...+|...+..+.. ..... ..-+. ...-+|+|-|+..-+......|+..
T Consensus 140 ~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~-~K~~K-~~~l~----~~~i~I~IGDs~~Di~aA~~AGi~~ 207 (237)
T PRK11009 140 TATKTETVSKTLADDFHIPADNMNPVIFAGDKP-GQYTK-TQWLK----KKNIRIFYGDSDNDITAAREAGARG 207 (237)
T ss_pred CCcccHHHHHHHHHHcCCCcccceeEEEcCCCC-CCCCH-HHHHH----hcCCeEEEcCCHHHHHHHHHcCCcE
Confidence 457799999987766 23366554444431 11110 11111 2233888999987665444555543
No 50
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.07 E-value=0.0003 Score=68.64 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=69.8
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEccc---------ceeeCCceeecccccCCC
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRES---------CIFSDGTYTKDLTVLGVD 383 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~---------C~~~~g~yiKDLs~Lgrd 383 (455)
++.-|-|++||-.|.+.+ .++||.+.+..|..+|..|+... .|...++.+- |.-....|.+-.+..|.+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~ 176 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGID 176 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCC
Confidence 667778999999999877 89999999999999999999886 7888887543 222334566667777887
Q ss_pred -CCcEEEEECCchhhccCC
Q 012840 384 -LAKVAIIDNSPQVFRLQV 401 (455)
Q Consensus 384 -l~~vVIIDDsp~~~~~qp 401 (455)
+++++++||+........
T Consensus 177 ~p~~t~FfDDS~~NI~~ak 195 (244)
T KOG3109|consen 177 SPRNTYFFDDSERNIQTAK 195 (244)
T ss_pred CcCceEEEcCchhhHHHHH
Confidence 999999999998775443
No 51
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.06 E-value=0.00049 Score=64.35 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=76.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vV 388 (455)
+.++||+.++|+.+. +.+.++|.|++...+++.+++.++-.+ +|...+..+.....+ ..|.+-++.+|.++++++
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 578999999999998 569999999999999999999998765 787766655432221 246677788899999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 012840 389 IIDNSPQVFRLQVNNGIPIESW 410 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~f 410 (455)
+|+|++.-+......|++....
T Consensus 163 ~igDs~~d~~aa~~aG~~~i~v 184 (213)
T TIGR01449 163 YVGDSRVDIQAARAAGCPSVLL 184 (213)
T ss_pred EeCCCHHHHHHHHHCCCeEEEE
Confidence 9999998776666677766543
No 52
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.04 E-value=0.00035 Score=65.57 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=75.7
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---Cceeeccccc-CCCCCcEE
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVL-GVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~L-grdl~~vV 388 (455)
+.++||+.++|+++.+.|.++|-|++...+++.+++.++-.+ +|+..+..+.....+ ..|.+-+..+ |.+++++|
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v 174 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVL 174 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheE
Confidence 578999999999999669999999999999999999988775 788888766654332 3567778889 99999999
Q ss_pred EEECCc-hhhccCCCceeee
Q 012840 389 IIDNSP-QVFRLQVNNGIPI 407 (455)
Q Consensus 389 IIDDsp-~~~~~qp~NgIpI 407 (455)
+|+|++ .-......+|++.
T Consensus 175 ~igD~~~~di~~A~~~G~~~ 194 (224)
T TIGR02254 175 MIGDSLTADIKGGQNAGLDT 194 (224)
T ss_pred EECCCcHHHHHHHHHCCCcE
Confidence 999997 4555445566544
No 53
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.02 E-value=0.00042 Score=64.52 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=75.0
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vV 388 (455)
+...||+.++|++|++ .|.++|.|++...++..+++.++-.. +|+..+..++.... ...|.+-++.+|.++++++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~-~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDD-PFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChh-hhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 5578999999999996 59999999999999999999987653 78888877654332 2356667778899999999
Q ss_pred EEECCchhhccCCCceeee
Q 012840 389 IIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI 407 (455)
+|+|++.-+......|+..
T Consensus 170 ~vgD~~~Di~~A~~~G~~~ 188 (198)
T TIGR01428 170 FVASNPWDLGGAKKFGFKT 188 (198)
T ss_pred EEeCCHHHHHHHHHCCCcE
Confidence 9999997665555666654
No 54
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.97 E-value=0.00044 Score=66.24 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=43.1
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEE
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 362 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~ 362 (455)
+.++||+.+||+++.+.+.++|-|++...+++++++.++-.. +|..++-
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~ 115 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLE 115 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeE
Confidence 578999999999999878999999999999999999998774 6665554
No 55
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.93 E-value=0.001 Score=60.59 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=74.2
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+.++||+||||+.-..... .+ ....-++.++|+. -|++|. +.+.++|.|+..+..+..+++.+...
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~----------~~-~~~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYT----------NN-GEEIKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred eEEEEeCceeEEcCeEEEC----------CC-CcEEEEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 4789999999995321100 01 1112234667776 688888 57999999999999999999999866
Q ss_pred CCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceee
Q 012840 354 GKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 406 (455)
Q Consensus 354 ~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIp 406 (455)
. +|... .-....+.+-+..+|.++++++.|-|+..-...-...|+.
T Consensus 69 ~-~~~~~------~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~ 114 (154)
T TIGR01670 69 H-LYQGQ------SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLS 114 (154)
T ss_pred E-EEecc------cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 4 55321 0111223344466788999999999998766554455554
No 56
>PLN02954 phosphoserine phosphatase
Probab=96.90 E-value=0.00033 Score=66.40 Aligned_cols=92 Identities=11% Similarity=0.177 Sum_probs=60.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCC-CeeeeEEEcccce-e-----------eCC--c-eee
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG-KLISRRVYRESCI-F-----------SDG--T-YTK 375 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~-~lfs~rL~Re~C~-~-----------~~g--~-yiK 375 (455)
..++||+.++|+++. +.+.++|-|++.+.+++.+++.++-.. .+|...+.-+... + ..+ . +.+
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~ 162 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQH 162 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHH
Confidence 457899999999998 569999999999999999999987653 3665444311100 0 000 0 011
Q ss_pred cccccCCCCCcEEEEECCchhhccCCCceee
Q 012840 376 DLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 406 (455)
Q Consensus 376 DLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIp 406 (455)
-+..+| .+++|+|-|++.-......+|+.
T Consensus 163 ~~~~~~--~~~~i~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 163 IKKKHG--YKTMVMIGDGATDLEARKPGGAD 191 (224)
T ss_pred HHHHcC--CCceEEEeCCHHHHHhhhcCCCC
Confidence 112233 46899999999877665444444
No 57
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.89 E-value=0.00092 Score=63.54 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=80.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vV 388 (455)
+.+.||+.++|+++. +.|.++|.|++...+++.+++.+.-.+ +|+..+..+.....+ ..|..-+..+|.++++++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 567899999999998 579999999999999999999988765 788877766543222 256667788899999999
Q ss_pred EEECCchhhccCCCceeeeccccCC
Q 012840 389 IIDNSPQVFRLQVNNGIPIESWFDD 413 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~f~dd 413 (455)
+|+|++.-+......|++..-+.+.
T Consensus 170 ~igDs~~Di~aA~~aG~~~i~v~~~ 194 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSIVVPAP 194 (222)
T ss_pred EEcCChhhHHHHHHcCCEEEEecCC
Confidence 9999998887777788877555443
No 58
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.83 E-value=0.00092 Score=62.70 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=76.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vV 388 (455)
...+||+.++|+.+. +.|.++|.|++....+..++.....-..+|+..++.+++... ...|..-++.+|.++++++
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 162 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAV 162 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeE
Confidence 457999999999998 579999999999887766554422223478887776665543 2356777888999999999
Q ss_pred EEECCchhhccCCCceeeeccccCC
Q 012840 389 IIDNSPQVFRLQVNNGIPIESWFDD 413 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~f~dd 413 (455)
+|||++.........|+...-+.+.
T Consensus 163 ~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 163 FFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred EeCCCHHHHHHHHHcCCEEEEecCC
Confidence 9999998877677788887655443
No 59
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.79 E-value=0.00059 Score=62.24 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=72.0
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vV 388 (455)
+...||+.++|+.|.+ .+.++|.|++ .+++.+++.++-.+ +|+..+..+..... ...|.+-++.+|..++++|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 163 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV 163 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 5789999999999985 6999999988 78999999887764 78887776554322 2245666778899999999
Q ss_pred EEECCchhhccCCCceeee
Q 012840 389 IIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI 407 (455)
+|+|++.-+.....+|++.
T Consensus 164 ~IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 164 VFEDALAGVQAARAAGMFA 182 (185)
T ss_pred EEeCcHhhHHHHHHCCCeE
Confidence 9999998776666667654
No 60
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.78 E-value=0.0034 Score=56.40 Aligned_cols=84 Identities=23% Similarity=0.236 Sum_probs=57.5
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHH---------
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAA--------- 344 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd--------- 344 (455)
+.+++||||||+..... .|. .....|.+.+.|+++. +.++|+++|+-......
T Consensus 2 K~i~~DiDGTL~~~~~~-----~y~------------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~ 64 (126)
T TIGR01689 2 KRLVMDLDNTITLTENG-----DYA------------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIH 64 (126)
T ss_pred CEEEEeCCCCcccCCCC-----ccc------------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchh
Confidence 37899999999764211 110 1346788999999985 78999999999888776
Q ss_pred ---HHHHHHCCCCCeeeeEEEcc-cceeeCCceeec
Q 012840 345 ---QLLDILDPDGKLISRRVYRE-SCIFSDGTYTKD 376 (455)
Q Consensus 345 ---~ILd~LDP~~~lfs~rL~Re-~C~~~~g~yiKD 376 (455)
.+++.|+..+-.+...+.|. -|. ..|.|+.|
T Consensus 65 ~~~~t~~wL~k~~ipYd~l~~~kp~~~-~~~~~~dD 99 (126)
T TIGR01689 65 TLPIIILWLNQHNVPYDEIYVGKPWCG-HDGFYVDD 99 (126)
T ss_pred hHHHHHHHHHHcCCCCceEEeCCCcCC-CCCceecc
Confidence 77888888775566666654 342 23444433
No 61
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.77 E-value=0.0013 Score=69.12 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=81.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vV 388 (455)
+.+.||+.+||+.|. +.+.++|-|++.+.+++.+++.++-.+ ||+..+..+++...+ ..|.+-+..+|.+++++|
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl 293 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI 293 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence 457899999999998 569999999999999999999998775 899888887764332 256777888999999999
Q ss_pred EEECCchhhccCCCceeeecccc
Q 012840 389 IIDNSPQVFRLQVNNGIPIESWF 411 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~f~ 411 (455)
+|+|++.-.......|+......
T Consensus 294 ~IGDS~~DIeAAk~AGm~~IgV~ 316 (381)
T PLN02575 294 VFGNSNQTVEAAHDARMKCVAVA 316 (381)
T ss_pred EEcCCHHHHHHHHHcCCEEEEEC
Confidence 99999988766666676655543
No 62
>PRK09449 dUMP phosphatase; Provisional
Probab=96.76 E-value=0.0012 Score=62.57 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=73.1
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCC-CCCcEE
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGV-DLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgr-dl~~vV 388 (455)
+...||+.++|++|.+.|.++|.|++...+++.+++.++..+ +|+..+..+++... ...|.+-++.+|. +.+.++
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~ 172 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVL 172 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 567899999999999889999999999999999999988775 78888887765433 2356677888886 457899
Q ss_pred EEECCch-hhccCCCceee
Q 012840 389 IIDNSPQ-VFRLQVNNGIP 406 (455)
Q Consensus 389 IIDDsp~-~~~~qp~NgIp 406 (455)
+|+|++. -.......|+.
T Consensus 173 ~vgD~~~~Di~~A~~aG~~ 191 (224)
T PRK09449 173 MVGDNLHSDILGGINAGID 191 (224)
T ss_pred EEcCCcHHHHHHHHHCCCc
Confidence 9999973 45444445544
No 63
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.74 E-value=0.0022 Score=69.96 Aligned_cols=108 Identities=12% Similarity=0.145 Sum_probs=71.3
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcH-----------
Q 012840 273 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQS----------- 340 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~----------- 340 (455)
+.+++.||+||||+...... .| ......| ..+-||+.+.|+.|. +.|.|+|+|+...
T Consensus 167 ~~Kia~fD~DGTLi~t~sg~----~~------~~~~~d~-~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~ 235 (526)
T TIGR01663 167 QEKIAGFDLDGTIIKTKSGK----VF------PKGPDDW-QIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDF 235 (526)
T ss_pred cCcEEEEECCCCccccCCCc----cC------CCCHHHe-eecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHH
Confidence 45699999999999753110 01 0001111 224599999999998 5799999999766
Q ss_pred -HHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeeccccc----CCCCCcEEEEECCc
Q 012840 341 -IYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVL----GVDLAKVAIIDNSP 394 (455)
Q Consensus 341 -~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~L----grdl~~vVIIDDsp 394 (455)
.++..+++.++. .|...+..+.|.+. .|.+..-+..+ +.+++++++|-|+.
T Consensus 236 ~~ki~~iL~~lgi---pfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 236 KAKIEAIVAKLGV---PFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred HHHHHHHHHHcCC---ceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 468888888875 36644444444433 23433333333 57899999999997
No 64
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.69 E-value=0.001 Score=61.08 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=75.8
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEEE
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vVI 389 (455)
+..-|++ +.|+++.+.+.++|-|++.+.+++.+++.++-.+ ||+..+..+++...+ ..|..-++++|.+++.+|+
T Consensus 87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ 164 (188)
T PRK10725 87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVV 164 (188)
T ss_pred CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-HceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 3455764 8999998779999999999999999999998765 899888877764332 2466777888999999999
Q ss_pred EECCchhhccCCCceeeecc
Q 012840 390 IDNSPQVFRLQVNNGIPIES 409 (455)
Q Consensus 390 IDDsp~~~~~qp~NgIpI~~ 409 (455)
|+|++.-+......|++...
T Consensus 165 igDs~~di~aA~~aG~~~i~ 184 (188)
T PRK10725 165 FEDADFGIQAARAAGMDAVD 184 (188)
T ss_pred EeccHhhHHHHHHCCCEEEe
Confidence 99999888776677776543
No 65
>PRK11587 putative phosphatase; Provisional
Probab=96.65 E-value=0.0028 Score=60.25 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=75.1
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vV 388 (455)
+.+.||+.++|++|. +.+.++|-|++...++..+++..... +|...+..++.... ...|.+-+..+|..++++|
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l 159 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--APEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECV 159 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--CccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEE
Confidence 567999999999998 67999999999999888888877652 45555666554322 2356777888999999999
Q ss_pred EEECCchhhccCCCceeeecccc
Q 012840 389 IIDNSPQVFRLQVNNGIPIESWF 411 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~f~ 411 (455)
+|+|++.-.......|++...+.
T Consensus 160 ~igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 160 VVEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred EEecchhhhHHHHHCCCEEEEEC
Confidence 99999987766667777654443
No 66
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.62 E-value=0.002 Score=62.53 Aligned_cols=98 Identities=12% Similarity=0.015 Sum_probs=77.3
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCC-CCCcE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGV-DLAKV 387 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgr-dl~~v 387 (455)
+.+.||+.++|++|. +.+.++|-|++.+.+++.+++.++..+.+|+..+..+..... ...|.+-+..+|. +++++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~ 177 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAAC 177 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchhe
Confidence 567899999999998 569999999999999999999998776224666666654322 2356777788887 48999
Q ss_pred EEEECCchhhccCCCceeeeccc
Q 012840 388 AIIDNSPQVFRLQVNNGIPIESW 410 (455)
Q Consensus 388 VIIDDsp~~~~~qp~NgIpI~~f 410 (455)
|+|.|++.-+......|+.....
T Consensus 178 l~IGDs~~Di~aA~~aGi~~i~v 200 (253)
T TIGR01422 178 VKVGDTVPDIEEGRNAGMWTVGL 200 (253)
T ss_pred EEECCcHHHHHHHHHCCCeEEEE
Confidence 99999998777777777776654
No 67
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.47 E-value=0.0029 Score=60.91 Aligned_cols=95 Identities=12% Similarity=0.022 Sum_probs=75.0
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vV 388 (455)
+.+.||+.++|++|.+ .+.++|.|++...++..+++.++-.. +|...+..+.+... ...|.+-++.+|.++++++
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l 172 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCV 172 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 6789999999999984 68999999999999999999987765 67766665554322 2246677788899999999
Q ss_pred EEECCchhhccCCCceeeec
Q 012840 389 IIDNSPQVFRLQVNNGIPIE 408 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~ 408 (455)
+|+|++.-.......|+...
T Consensus 173 ~IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 173 YVGDDERDILAARAAGMPSV 192 (229)
T ss_pred EeCCCHHHHHHHHHCCCcEE
Confidence 99999977765556666653
No 68
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.42 E-value=0.0025 Score=59.96 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=71.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vV 388 (455)
...+||+.+||+.+. +.+.++|.|.+...++..+++.++... +|...+..+.+... ...|.+-+..++.+.++++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 170 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEML 170 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-CccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence 668999999999998 469999999999999999999998764 67665554443211 1235566677899999999
Q ss_pred EEECCchhhccCCCceee
Q 012840 389 IIDNSPQVFRLQVNNGIP 406 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIp 406 (455)
+|+|++.-+......|++
T Consensus 171 ~igD~~~Di~~a~~~g~~ 188 (226)
T PRK13222 171 FVGDSRNDIQAARAAGCP 188 (226)
T ss_pred EECCCHHHHHHHHHCCCc
Confidence 999998777555555554
No 69
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=96.42 E-value=0.005 Score=56.76 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=66.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccce-eeCCc------------eeeccc
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCI-FSDGT------------YTKDLT 378 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~-~~~g~------------yiKDLs 378 (455)
+.++||+.++|+++. +.+.++|.|++...+++.+++.+.... +|...+..+... ..... +.+-+.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 678999999999998 579999999999999999999998664 666555432211 11111 111134
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeee
Q 012840 379 VLGVDLAKVAIIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 379 ~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI 407 (455)
.+|.+++++++|.|+..-...-...|+++
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~ 186 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISI 186 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeE
Confidence 46788899999999986665444455544
No 70
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.28 E-value=0.0039 Score=62.02 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=73.2
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vV 388 (455)
+..+||+.++|+.|. +.+.++|.|.+...++..+++.++-.+ +|...+..+.+.... ..|.+-+..+|.+++++|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 557899999999998 579999999999999999999987654 787766655433221 234556677899999999
Q ss_pred EEECCchhhccCCCceeee
Q 012840 389 IIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI 407 (455)
+|+|++.-......+|+..
T Consensus 179 ~IGD~~~Di~aA~~aGi~~ 197 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQC 197 (272)
T ss_pred EECCCHHHHHHHHHCCCeE
Confidence 9999998776666677653
No 71
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.27 E-value=0.0065 Score=59.06 Aligned_cols=94 Identities=11% Similarity=0.084 Sum_probs=62.2
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHH--HHHHHHC
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAA--QLLDILD 351 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd--~ILd~LD 351 (455)
..++||+||||.+.. ..-||+.++|++|. +.+.++|.|++.+..++ +.++.++
T Consensus 9 ~~~~~D~dG~l~~~~------------------------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~g 64 (242)
T TIGR01459 9 DVFLLDLWGVIIDGN------------------------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLG 64 (242)
T ss_pred CEEEEecccccccCC------------------------ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCC
Confidence 478999999998652 23699999999998 57999999999888776 7788887
Q ss_pred CCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCc
Q 012840 352 PDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSP 394 (455)
Q Consensus 352 P~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp 394 (455)
....+|...+....... ..+..-++.+|...+++++|-|..
T Consensus 65 l~~~~~~~Ii~s~~~~~--~~l~~~~~~~~~~~~~~~~vGd~~ 105 (242)
T TIGR01459 65 INADLPEMIISSGEIAV--QMILESKKRFDIRNGIIYLLGHLE 105 (242)
T ss_pred CCccccceEEccHHHHH--HHHHhhhhhccCCCceEEEeCCcc
Confidence 65325666666443211 011111223344445566655544
No 72
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=96.25 E-value=0.0014 Score=67.40 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=65.5
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEccccee----------e--CCceeec-cc
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF----------S--DGTYTKD-LT 378 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~----------~--~g~yiKD-Ls 378 (455)
+.++||+.++|+.+.+ .+.++|.|.+...+++.+++.++-.. .+...+--....+ . +...++. ++
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 6789999999999994 69999999999999999999987754 3333332111100 0 1111122 24
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeeec
Q 012840 379 VLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 408 (455)
Q Consensus 379 ~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~ 408 (455)
.+|.+++++|.|-|+..-..+-..-|+.|.
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA 288 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKAAGLGIA 288 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHHCCCeEE
Confidence 568899999999999976655445555554
No 73
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.21 E-value=0.0062 Score=59.88 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=76.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCC-CCcE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVD-LAKV 387 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrd-l~~v 387 (455)
+.+-||+.++|++|. +.|.++|-|++.+..++.+++.+...+-+|+..+..++.... ...|.+-+..+|.. ++.+
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~ 179 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAAC 179 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcce
Confidence 467899999999998 579999999999999999999887665334666666664332 23567777888875 6899
Q ss_pred EEEECCchhhccCCCceeeeccc
Q 012840 388 AIIDNSPQVFRLQVNNGIPIESW 410 (455)
Q Consensus 388 VIIDDsp~~~~~qp~NgIpI~~f 410 (455)
|+|+|++.-+......|++....
T Consensus 180 l~IGDs~~Di~aA~~aG~~~i~v 202 (267)
T PRK13478 180 VKVDDTVPGIEEGLNAGMWTVGV 202 (267)
T ss_pred EEEcCcHHHHHHHHHCCCEEEEE
Confidence 99999998777666777765544
No 74
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=96.18 E-value=0.007 Score=56.73 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=71.5
Q ss_pred CceEEEEeccccccccc-ccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHH
Q 012840 273 KSVTLVLDLDETLVHST-LEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 350 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~-~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~L 350 (455)
+.+.+++|+||||+... +..... .....+.. |.+ .=++.+. +.+.++|-|......+..+++.+
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~-----------~~~~~~~~-~d~--~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l 85 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNG-----------EELKAFNV-RDG--YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL 85 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCC-----------CEEEEEec-cch--HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc
Confidence 46799999999999753 111111 11111111 221 1234444 67999999999999999999998
Q ss_pred CCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeec
Q 012840 351 DPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 408 (455)
Q Consensus 351 DP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~ 408 (455)
.... +|. .+.-....+.+-+..+|.+++.++.|-|+..-...-...|+.+.
T Consensus 86 gl~~-~f~------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~ 136 (183)
T PRK09484 86 GITH-LYQ------GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVA 136 (183)
T ss_pred CCce-eec------CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEe
Confidence 7653 443 11111123344556778999999999999876655444566543
No 75
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.13 E-value=0.0057 Score=61.37 Aligned_cols=98 Identities=12% Similarity=0.151 Sum_probs=72.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCC--CeeeeEEEcccceee---CCceeecccccCCCCCc
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG--KLISRRVYRESCIFS---DGTYTKDLTVLGVDLAK 386 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~--~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~ 386 (455)
+.+.||+.+||++|. +.|.++|.|++...++..+++.+.-.+ .+|... ..+.+... ...|.+-+..+|.++++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 468999999999998 579999999999999999998773221 223322 34443221 12556677888999999
Q ss_pred EEEEECCchhhccCCCceeeecccc
Q 012840 387 VAIIDNSPQVFRLQVNNGIPIESWF 411 (455)
Q Consensus 387 vVIIDDsp~~~~~qp~NgIpI~~f~ 411 (455)
+|+|+|++.-+.....+|+.+....
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~i~v~ 246 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRCIVTK 246 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEEEEEc
Confidence 9999999988877667777766553
No 76
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.11 E-value=0.0032 Score=59.60 Aligned_cols=95 Identities=7% Similarity=0.065 Sum_probs=74.4
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCCCeee-eEEEcccceee---CCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLIS-RRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~~lfs-~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vV 388 (455)
+...||+.++|+.|. +.++|.|++.+.+++.+++.++... +|. ..+..++.... ...|..-+..+|..++++|
T Consensus 87 ~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 87 LEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 567899999999994 8999999999999999999887765 675 44555443321 2356677788899999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 012840 389 IIDNSPQVFRLQVNNGIPIESW 410 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~f 410 (455)
+|+|++.........|+++.-+
T Consensus 164 ~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 164 LVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred EEeCcHhhHHHHHHCCCEEEEE
Confidence 9999998876666778776544
No 77
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=96.11 E-value=0.0052 Score=58.05 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=74.6
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCC-CeeeeEEEcccceee---CCceeecccccCCC-CCc
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG-KLISRRVYRESCIFS---DGTYTKDLTVLGVD-LAK 386 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~-~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrd-l~~ 386 (455)
+.+.||+.+||++|+ +.|.++|.|++...++..+++.++... .+|...+..+.-... ...|.+-+.++|.. +++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 468999999999997 679999999999999999999998652 588877765542211 23455667788876 799
Q ss_pred EEEEECCchhhccCCCceeee
Q 012840 387 VAIIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 387 vVIIDDsp~~~~~qp~NgIpI 407 (455)
+++|+|++.-.......|+++
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCe
Confidence 999999997776666677765
No 78
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.08 E-value=0.0054 Score=61.59 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=55.1
Q ss_pred CCceEEEEeccccccccccc----ccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHH
Q 012840 272 RKSVTLVLDLDETLVHSTLE----YCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQL 346 (455)
Q Consensus 272 ~kk~tLVLDLDeTLVhS~~~----~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~I 346 (455)
.+++.+|||+|||+++.+.. ......|.-. .+..-........-||+.+||+++. +...++|.|.....+.+..
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~-~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T 151 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPE-TWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT 151 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCHH-HHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence 45789999999999987621 1111111000 0000000112556799999999997 5689999999886666644
Q ss_pred H---HHHCCCCCeeeeEEEcc
Q 012840 347 L---DILDPDGKLISRRVYRE 364 (455)
Q Consensus 347 L---d~LDP~~~lfs~rL~Re 364 (455)
+ +.++.....+.+.++|+
T Consensus 152 ~~~Lkk~Gi~~~~~d~lllr~ 172 (266)
T TIGR01533 152 LKNLKRFGFPQADEEHLLLKK 172 (266)
T ss_pred HHHHHHcCcCCCCcceEEeCC
Confidence 4 44444332345666665
No 79
>PRK08238 hypothetical protein; Validated
Probab=96.07 E-value=0.0057 Score=66.11 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=40.6
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcc
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRE 364 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re 364 (455)
...+|++.++|+++. +.+.++|-|++.+.++++++++++- |+..+..+
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd~Vigsd 119 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FDGVFASD 119 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CCEEEeCC
Confidence 357899999999997 6799999999999999999999854 56555544
No 80
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.06 E-value=0.0023 Score=60.13 Aligned_cols=99 Identities=18% Similarity=0.095 Sum_probs=70.4
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCcHHH--HHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCC
Q 012840 312 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIY--AAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLA 385 (455)
Q Consensus 312 ~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~Y--Ad~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~ 385 (455)
.+.+.||+.++|++|.+ .|.++|.|++...+ +...+..++.. .+|+..+..+.+... ...|.+-++.+|.+++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~ 170 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPE 170 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHH
Confidence 35678999999999984 69999999987654 32223223222 368777765544322 2356777788999999
Q ss_pred cEEEEECCchhhccCCCceeeecccc
Q 012840 386 KVAIIDNSPQVFRLQVNNGIPIESWF 411 (455)
Q Consensus 386 ~vVIIDDsp~~~~~qp~NgIpI~~f~ 411 (455)
++++|||++.........|+...-+.
T Consensus 171 ~~l~i~D~~~di~aA~~aG~~~i~v~ 196 (211)
T TIGR02247 171 ECVFLDDLGSNLKPAAALGITTIKVS 196 (211)
T ss_pred HeEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 99999999988876667787765443
No 81
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=96.05 E-value=0.0044 Score=60.37 Aligned_cols=95 Identities=12% Similarity=0.089 Sum_probs=70.3
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHC---CCCCeeeeEEEccccee-eCCceeecccccCCCCCcE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILD---PDGKLISRRVYRESCIF-SDGTYTKDLTVLGVDLAKV 387 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LD---P~~~lfs~rL~Re~C~~-~~g~yiKDLs~Lgrdl~~v 387 (455)
..+.||+.++|+++. +.+.++|+|++...+...+++..+ .. .+|+..+....+.. ....|.+-+..+|.+++++
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~-~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~ 172 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT-PYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPREI 172 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh-hhcceEEEeCcccCCCHHHHHHHHHHhCcChhHE
Confidence 567899999999998 579999999999999999888763 22 25554432211111 1246778888899999999
Q ss_pred EEEECCchhhccCCCceeeec
Q 012840 388 AIIDNSPQVFRLQVNNGIPIE 408 (455)
Q Consensus 388 VIIDDsp~~~~~qp~NgIpI~ 408 (455)
++|+|++.-.......|+...
T Consensus 173 lfVgDs~~Di~AA~~AG~~ti 193 (220)
T TIGR01691 173 LFLSDIINELDAARKAGLHTG 193 (220)
T ss_pred EEEeCCHHHHHHHHHcCCEEE
Confidence 999999987766556666543
No 82
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=96.01 E-value=0.012 Score=56.95 Aligned_cols=85 Identities=14% Similarity=0.235 Sum_probs=62.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---Ccee----ec------cc
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYT----KD------LT 378 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yi----KD------Ls 378 (455)
+.++||+.+.++++. ..+.++|.|+|...++++|.+.|..+. .+..++-.++-.+.. |... |. +.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 789999999999999 569999999999999999999999886 566776655411221 1111 11 12
Q ss_pred ccCCCCCcEEEEECCchhhc
Q 012840 379 VLGVDLAKVAIIDNSPQVFR 398 (455)
Q Consensus 379 ~Lgrdl~~vVIIDDsp~~~~ 398 (455)
.+|.++++++-+=|+..-..
T Consensus 155 ~~g~~~~~~~a~gDs~nDlp 174 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLP 174 (212)
T ss_pred HcCCCHHHeEEEcCchhhHH
Confidence 34778888888888875443
No 83
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=95.99 E-value=0.0048 Score=56.28 Aligned_cols=91 Identities=15% Similarity=0.156 Sum_probs=68.6
Q ss_pred eeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEEE
Q 012840 314 KQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 314 ~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vVI 389 (455)
.+.||+.++|++|. +.+.++|-|.+. .+..+++.++-.. +|+..+..++-... ...|.+-++.++.+++++|+
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 56899999999998 569999999764 3567888887764 78877765432211 23466777888999999999
Q ss_pred EECCchhhccCCCceeee
Q 012840 390 IDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 390 IDDsp~~~~~qp~NgIpI 407 (455)
|+|++.-+.....+|++.
T Consensus 164 vgD~~~di~aA~~aG~~~ 181 (185)
T TIGR01990 164 IEDAQAGIEAIKAAGMFA 181 (185)
T ss_pred EecCHHHHHHHHHcCCEE
Confidence 999998776666667654
No 84
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.99 E-value=0.0064 Score=56.68 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=66.9
Q ss_pred eeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEEE
Q 012840 314 KQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 314 ~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vVI 389 (455)
.+-||+.++|++|++ .|.++|.|++...+ ..+++.++-.+ +|...+..+.+...+ ..|.+-++.+|.+++++|+
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~~-~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 182 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLLE-YFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH 182 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcHH-hcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 567999999999985 69999999988764 77888876654 788777765544322 2466777888999999999
Q ss_pred EECCc-hhhccCCCcee
Q 012840 390 IDNSP-QVFRLQVNNGI 405 (455)
Q Consensus 390 IDDsp-~~~~~qp~NgI 405 (455)
|+|++ .-.......|+
T Consensus 183 IgD~~~~Di~~A~~aG~ 199 (203)
T TIGR02252 183 IGDSLRNDYQGARAAGW 199 (203)
T ss_pred ECCCchHHHHHHHHcCC
Confidence 99997 34433334444
No 85
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.92 E-value=0.01 Score=55.78 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=72.3
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEEE
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~---g~yiKDLs~Lgrdl~~vVI 389 (455)
+..-|++.++|+.+.+.|.++|.|.+...++...+..+... .+|+..++.+.....+ ..|..-+..+|.+++.+++
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~-~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGLL-DYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCCh-hhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 67789999999999977999999999999999999999844 5899999988766432 3567778889999999999
Q ss_pred EECCchhh
Q 012840 390 IDNSPQVF 397 (455)
Q Consensus 390 IDDsp~~~ 397 (455)
|||+...-
T Consensus 177 VgD~~~~d 184 (229)
T COG1011 177 VGDSLEND 184 (229)
T ss_pred ECCChhhh
Confidence 99999766
No 86
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.73 E-value=0.018 Score=53.82 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=65.0
Q ss_pred eCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee--CCceeecccccCCCCCcEEEEE
Q 012840 315 QRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS--DGTYTKDLTVLGVDLAKVAIID 391 (455)
Q Consensus 315 lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~--~g~yiKDLs~Lgrdl~~vVIID 391 (455)
..|+..++|+.|. +.+.++|.|++.+.+++.+++.++-.. +|+..+..++.... ...|.+-+..+|.+++++|+|.
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~vG 185 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAMVG 185 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEEe
Confidence 3456699999998 469999999999999999999998774 88878776654321 2245666778899999999999
Q ss_pred CCchhh
Q 012840 392 NSPQVF 397 (455)
Q Consensus 392 Dsp~~~ 397 (455)
|++.-.
T Consensus 186 D~~~Di 191 (197)
T TIGR01548 186 DTVDDI 191 (197)
T ss_pred CCHHHH
Confidence 998543
No 87
>PLN02811 hydrolase
Probab=95.64 E-value=0.0086 Score=57.12 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=70.8
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHH-HHHHHCCCCCeeeeEEEcc--cceee---CCceeecccccC---C
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQ-LLDILDPDGKLISRRVYRE--SCIFS---DGTYTKDLTVLG---V 382 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~-ILd~LDP~~~lfs~rL~Re--~C~~~---~g~yiKDLs~Lg---r 382 (455)
+.+.||+.++|+.|++ .|.++|-|++.+.+... +++..... .+|...++.+ ++... ...|.+-+..+| .
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 155 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPV 155 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCC
Confidence 4568999999999984 69999999998876554 33332222 3788888877 54322 335667777775 8
Q ss_pred CCCcEEEEECCchhhccCCCceeeeccc
Q 012840 383 DLAKVAIIDNSPQVFRLQVNNGIPIESW 410 (455)
Q Consensus 383 dl~~vVIIDDsp~~~~~qp~NgIpI~~f 410 (455)
+++.+|+|+|++.-+......|++....
T Consensus 156 ~~~~~v~IgDs~~di~aA~~aG~~~i~v 183 (220)
T PLN02811 156 DPGKVLVFEDAPSGVEAAKNAGMSVVMV 183 (220)
T ss_pred CccceEEEeccHhhHHHHHHCCCeEEEE
Confidence 8999999999998877666777776654
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.37 E-value=0.021 Score=67.32 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=79.7
Q ss_pred eCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEEEE
Q 012840 315 QRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVAII 390 (455)
Q Consensus 315 lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vVII 390 (455)
..||+.+||++|. +.|.++|.|++...+++.+++.++-...+|+..+..+++... ...|.+-++.+|.+++++|+|
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~I 241 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVI 241 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEE
Confidence 5799999999998 579999999999999999999998654578888887766533 236777788899999999999
Q ss_pred ECCchhhccCCCceeeecccc
Q 012840 391 DNSPQVFRLQVNNGIPIESWF 411 (455)
Q Consensus 391 DDsp~~~~~qp~NgIpI~~f~ 411 (455)
+|++.-+......|+..-...
T Consensus 242 gDs~~Di~AA~~aGm~~I~v~ 262 (1057)
T PLN02919 242 EDALAGVQAARAAGMRCIAVT 262 (1057)
T ss_pred cCCHHHHHHHHHcCCEEEEEC
Confidence 999988776667777665443
No 89
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=95.14 E-value=0.018 Score=61.36 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=70.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEccccee--eCCceeecccccCCCCCcEEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF--SDGTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~--~~g~yiKDLs~Lgrdl~~vVI 389 (455)
+.+.||+.++|++|. +.+.+.|.|++.+.++..+++.++-.. ||...+..+.... .+..|.+-+..+ +++++|+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~i~~~d~v~~~~kP~~~~~al~~l--~~~~~v~ 405 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTETFSIEQINSLNKSDLVKSILNKY--DIKEAAV 405 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcceeEecCCCCCCCCcHHHHHHHHhc--CcceEEE
Confidence 567899999999998 579999999999999999999998775 7888777665321 122344444444 4688999
Q ss_pred EECCchhhccCCCceeee
Q 012840 390 IDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 390 IDDsp~~~~~qp~NgIpI 407 (455)
|.|++.-+......|+..
T Consensus 406 VGDs~~Di~aAk~AG~~~ 423 (459)
T PRK06698 406 VGDRLSDINAAKDNGLIA 423 (459)
T ss_pred EeCCHHHHHHHHHCCCeE
Confidence 999998776666667654
No 90
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=95.14 E-value=0.044 Score=52.29 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=64.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEE--cccceeeC-------------Cceeec
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY--RESCIFSD-------------GTYTKD 376 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~--Re~C~~~~-------------g~yiKD 376 (455)
+.++||+.+||+++. +.+.++|.|++...|++++++.+-+...++...+. .+...... ..+.+-
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 678999999999998 56999999999999999999987222223322221 11111000 012234
Q ss_pred ccccCCCCCcEEEEECCchhhccCCCceeeec
Q 012840 377 LTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 408 (455)
Q Consensus 377 Ls~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~ 408 (455)
+..++.+..++|.|.|+..-.......|+.+.
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCccee
Confidence 45567778899999999987765555666443
No 91
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=95.06 E-value=0.067 Score=52.18 Aligned_cols=58 Identities=31% Similarity=0.339 Sum_probs=50.8
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCC
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 352 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP 352 (455)
.+.|++||||||+.+... ..|...+.|+++. +.+.++|.|.-.-..+.++++.|..
T Consensus 3 ~kli~~DlDGTLl~~~~~-----------------------i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~ 59 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-----------------------ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGL 59 (264)
T ss_pred eeEEEEcCCCCccCCCCc-----------------------cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCC
Confidence 468999999999987421 5788999999885 7899999999999999999999998
Q ss_pred CC
Q 012840 353 DG 354 (455)
Q Consensus 353 ~~ 354 (455)
.+
T Consensus 60 ~~ 61 (264)
T COG0561 60 DG 61 (264)
T ss_pred Cc
Confidence 86
No 92
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=95.02 E-value=0.036 Score=51.29 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=57.3
Q ss_pred eEEEEeccccccccccccc---CCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCc---H-------
Q 012840 275 VTLVLDLDETLVHSTLEYC---DDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ---S------- 340 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~---~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~---~------- 340 (455)
+.+.|||||||+....... ...| +..+-|++-+-|+++. +.|.|||+|... +
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D--------------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~ 66 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDD--------------WKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDL 66 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCG--------------GEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHH
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHH--------------hhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchH
Confidence 4689999999999753211 1122 2445688999999998 579999999752 1
Q ss_pred ----HHHHHHHHHHCCCCCeeeeEEE---cccceee-CCceeecccccC----CCCCcEEEEECCch
Q 012840 341 ----IYAAQLLDILDPDGKLISRRVY---RESCIFS-DGTYTKDLTVLG----VDLAKVAIIDNSPQ 395 (455)
Q Consensus 341 ----~YAd~ILd~LDP~~~lfs~rL~---Re~C~~~-~g~yiKDLs~Lg----rdl~~vVIIDDsp~ 395 (455)
...+.+++.|+-. + ..++ .+.|..- .|.+..-++.++ .|+++.++|=|++.
T Consensus 67 ~~~~~ki~~il~~l~ip---~-~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaag 129 (159)
T PF08645_consen 67 ENFHEKIENILKELGIP---I-QVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAG 129 (159)
T ss_dssp HHHHHHHHHHHHHCTS----E-EEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCH
T ss_pred HHHHHHHHHHHHHcCCc---e-EEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCC
Confidence 3344455555322 2 2222 2233322 344433333333 58899999998754
No 93
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.88 E-value=0.067 Score=52.83 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=47.3
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCC
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDP 352 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP 352 (455)
.+.+++||||||+.+.. ...|...+.|+++.+ .+.++|.|.-....+..+++.++.
T Consensus 4 ~kli~~DlDGTLl~~~~-----------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l 60 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-----------------------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGL 60 (273)
T ss_pred ceEEEEcCcccCcCCCC-----------------------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 45899999999997521 135778899999985 699999999999999999999876
Q ss_pred CC
Q 012840 353 DG 354 (455)
Q Consensus 353 ~~ 354 (455)
..
T Consensus 61 ~~ 62 (273)
T PRK00192 61 ED 62 (273)
T ss_pred CC
Confidence 53
No 94
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=94.72 E-value=0.072 Score=49.77 Aligned_cols=54 Identities=28% Similarity=0.284 Sum_probs=45.0
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 277 LVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
|++||||||+++... .-|...+.|+.+. +.+.++|.|.-....+..++..+.-.
T Consensus 1 i~~DlDGTLl~~~~~-----------------------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-----------------------ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSS-----------------------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred cEEEECCceecCCCe-----------------------eCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 689999999996321 3577888999888 78999999999999999999977644
No 95
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=94.68 E-value=0.0078 Score=59.00 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=75.3
Q ss_pred EEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee-----CCceeecccccCCCC-
Q 012840 312 YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS-----DGTYTKDLTVLGVDL- 384 (455)
Q Consensus 312 ~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~-----~g~yiKDLs~Lgrdl- 384 (455)
.++.-||+..++..|. ..-.+.++|.+.+.+++..++.+.---..|++..+-+.-... ...|.+-+++||..+
T Consensus 90 ~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~ 169 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPP 169 (222)
T ss_pred ccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCc
Confidence 3788899999999999 568999999999999998888875222356666662222222 346788889999888
Q ss_pred CcEEEEECCchhhccCCCceeeeccccC
Q 012840 385 AKVAIIDNSPQVFRLQVNNGIPIESWFD 412 (455)
Q Consensus 385 ~~vVIIDDsp~~~~~qp~NgIpI~~f~d 412 (455)
+++++++|++........-|.++...-+
T Consensus 170 ~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 170 SKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred cceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 9999999999877665555555544443
No 96
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=94.61 E-value=0.038 Score=52.15 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=82.9
Q ss_pred CCccCCCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHH
Q 012840 266 PKETQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAA 344 (455)
Q Consensus 266 P~~~~~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd 344 (455)
|.....++-+.+|+|||+|||- |+.. ..-|-+.+.+..+. +.-.++|.+...+.-+.
T Consensus 20 ~~~L~~~Gikgvi~DlDNTLv~--wd~~--------------------~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~ 77 (175)
T COG2179 20 PDILKAHGIKGVILDLDNTLVP--WDNP--------------------DATPELRAWLAELKEAGIKVVVVSNNKESRVA 77 (175)
T ss_pred HHHHHHcCCcEEEEeccCceec--ccCC--------------------CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHH
Confidence 3444567788999999999985 3321 12588899999999 45999999999999999
Q ss_pred HHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCch--hhccCCCc--eeeeccccC
Q 012840 345 QLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQ--VFRLQVNN--GIPIESWFD 412 (455)
Q Consensus 345 ~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~--~~~~qp~N--gIpI~~f~d 412 (455)
.++..||-.. + ++-- .-....+.|-|..++.+.++|++|-|... +...+... .|.|+|-..
T Consensus 78 ~~~~~l~v~f--i----~~A~-KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~ 142 (175)
T COG2179 78 RAAEKLGVPF--I----YRAK-KPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVA 142 (175)
T ss_pred hhhhhcCCce--e----eccc-CccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEecc
Confidence 9999998762 1 1100 00112456788889999999999999874 44444332 566666643
No 97
>PTZ00445 p36-lilke protein; Provisional
Probab=94.56 E-value=0.042 Score=53.75 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=79.3
Q ss_pred CCCceEEEEecccccccc--c--ccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCcHHH---
Q 012840 271 GRKSVTLVLDLDETLVHS--T--LEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIY--- 342 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS--~--~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~Y--- 342 (455)
..+-+.+++|||.|||-. - |++.. ....+.-..||.+..+++.|.+ .+.|+|-|-+.+.-
T Consensus 40 ~~GIk~Va~D~DnTlI~~HsgG~~~~~~------------~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~ 107 (219)
T PTZ00445 40 ECGIKVIASDFDLTMITKHSGGYIDPDN------------DDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPS 107 (219)
T ss_pred HcCCeEEEecchhhhhhhhcccccCCCc------------chhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccc
Confidence 356679999999999862 1 22110 1112335579999999999985 79999999998854
Q ss_pred ------------HHHHHHHHCCCCCeeee------EEEcccceee--------CCc--e--eecccccCCCCCcEEEEEC
Q 012840 343 ------------AAQLLDILDPDGKLISR------RVYRESCIFS--------DGT--Y--TKDLTVLGVDLAKVAIIDN 392 (455)
Q Consensus 343 ------------Ad~ILd~LDP~~~lfs~------rL~Re~C~~~--------~g~--y--iKDLs~Lgrdl~~vVIIDD 392 (455)
+...|+.=.-+-+ +.. +++.+.-.|. .+. | .+-++..|.+++.+++|||
T Consensus 108 ~~~~~~Isg~~li~~~lk~s~~~~~-i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD 186 (219)
T PTZ00445 108 ENRPRYISGDRMVEAALKKSKCDFK-IKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDD 186 (219)
T ss_pred cCCcceechHHHHHHHHHhcCccce-eeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecC
Confidence 4444443221111 111 1112211111 122 3 4445667999999999999
Q ss_pred CchhhccCCCceeeeccccC
Q 012840 393 SPQVFRLQVNNGIPIESWFD 412 (455)
Q Consensus 393 sp~~~~~qp~NgIpI~~f~d 412 (455)
.+..+.....-|+..--+.+
T Consensus 187 ~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 187 DMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred CHHHHHHHHHCCCEEEEcCC
Confidence 99988766666766655543
No 98
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=94.35 E-value=0.07 Score=45.65 Aligned_cols=50 Identities=24% Similarity=0.267 Sum_probs=36.0
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHH
Q 012840 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDIL 350 (455)
Q Consensus 277 LVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~L 350 (455)
++||+||||.+.. ..=||+.+||++|.+ ...+++.|.+...-...+.+.|
T Consensus 1 ~l~D~dGvl~~g~------------------------~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 1 FLFDLDGVLYNGN------------------------EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp EEEESTTTSEETT------------------------EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CEEeCccEeEeCC------------------------CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 5799999998742 124999999999995 5999999999854444444444
No 99
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=94.31 E-value=0.066 Score=50.18 Aligned_cols=115 Identities=12% Similarity=0.121 Sum_probs=72.9
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceee-eEEEeeCchHHHHHHHh-hcccEEEEEcCCcHHHHHHHHHHHC
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEH-TVYVKQRPHLKTFLERV-AEMFEVVIFTASQSIYAAQLLDILD 351 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~-~v~V~lRPgl~eFLe~L-sk~YEIvIfTas~~~YAd~ILd~LD 351 (455)
-+.+|||.||+|-.-+. .++..+. ...+..|-|.-- ..| .+.+.+.|.|+....+++.+++.+.
T Consensus 7 i~~~v~d~dGv~tdg~~------------~~~~~g~~~~~~~~~D~~~~--~~L~~~Gi~laIiT~k~~~~~~~~l~~lg 72 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRI------------VINDEGIESRNFDIKDGMGV--IVLQLCGIDVAIITSKKSGAVRHRAEELK 72 (169)
T ss_pred CeEEEEeCceeeECCeE------------EEcCCCcEEEEEecchHHHH--HHHHHCCCEEEEEECCCcHHHHHHHHHCC
Confidence 56899999999976531 1111111 222344554432 223 3679999999999999999999997
Q ss_pred CCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeecc
Q 012840 352 PDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIES 409 (455)
Q Consensus 352 P~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~NgIpI~~ 409 (455)
-.. +|... .-....+..-+..++.++++++.|-|++.-.......|+.+..
T Consensus 73 i~~-~f~~~------kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am 123 (169)
T TIGR02726 73 IKR-FHEGI------KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAV 123 (169)
T ss_pred CcE-EEecC------CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEEC
Confidence 763 55421 0011233444566788899999999998765444445554443
No 100
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.25 E-value=0.14 Score=50.44 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=46.0
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHH
Q 012840 272 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 350 (455)
Q Consensus 272 ~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~L 350 (455)
+.++.+++||||||++.... .-|-..+-|+++. +...++|.|.-....+.++++.|
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~-----------------------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTY-----------------------DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred CCCeEEEEeCccCCcCCCCc-----------------------CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 34678999999999985211 1244667788887 56999999999999999999999
Q ss_pred CCC
Q 012840 351 DPD 353 (455)
Q Consensus 351 DP~ 353 (455)
+..
T Consensus 62 ~~~ 64 (271)
T PRK03669 62 GLQ 64 (271)
T ss_pred CCC
Confidence 764
No 101
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=94.24 E-value=0.13 Score=48.69 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=46.7
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+.+++||||||+.... .+-|...+-|+++. +.+.++|.|.-....+.++++.|+..
T Consensus 2 k~v~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR-----------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred cEEEEecCCCcCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 4789999999996311 24677888899998 56999999999999999999999876
Q ss_pred C
Q 012840 354 G 354 (455)
Q Consensus 354 ~ 354 (455)
.
T Consensus 59 ~ 59 (215)
T TIGR01487 59 G 59 (215)
T ss_pred C
Confidence 4
No 102
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=94.18 E-value=0.086 Score=50.19 Aligned_cols=94 Identities=9% Similarity=0.060 Sum_probs=61.1
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccc--eeeC---Cc----------eee
Q 012840 312 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESC--IFSD---GT----------YTK 375 (455)
Q Consensus 312 ~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C--~~~~---g~----------yiK 375 (455)
.+.+|||+.+||+++.+ .+.++|.|++...|++++++.+.+...++..++.-+.- .... .. ..+
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 37899999999999996 69999999999999999999986544344333321110 0000 00 112
Q ss_pred cccccCCCCCcEEEEECCchhhccCCCcee
Q 012840 376 DLTVLGVDLAKVAIIDNSPQVFRLQVNNGI 405 (455)
Q Consensus 376 DLs~Lgrdl~~vVIIDDsp~~~~~qp~NgI 405 (455)
-++.++...+++|.|-|+..-+......++
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 233344566789999999876644333333
No 103
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=94.11 E-value=0.014 Score=53.09 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=62.4
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEEE
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vVI 389 (455)
+..+||+.++|+. ++|.|++...+...+++.+.... +|+..+..+..... ...|.+-++++|.+++.+++
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~ 161 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLM 161 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEe
Confidence 5579999999993 78999999999999999987654 78877776654332 23567788889999999999
Q ss_pred EECCchh
Q 012840 390 IDNSPQV 396 (455)
Q Consensus 390 IDDsp~~ 396 (455)
|+|++.-
T Consensus 162 vgD~~~D 168 (175)
T TIGR01493 162 VAAHQWD 168 (175)
T ss_pred EecChhh
Confidence 9999743
No 104
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=93.95 E-value=0.15 Score=49.70 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=45.7
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCC
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 352 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP 352 (455)
.+.+++||||||++... .+-|...+.|+++. +.+.++|.|.-....+.++++.+..
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH-----------------------TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHM 59 (270)
T ss_pred eEEEEEecCCcCcCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCC
Confidence 35889999999997531 12456778888888 5699999999999999999999876
Q ss_pred C
Q 012840 353 D 353 (455)
Q Consensus 353 ~ 353 (455)
.
T Consensus 60 ~ 60 (270)
T PRK10513 60 E 60 (270)
T ss_pred C
Confidence 4
No 105
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=93.95 E-value=0.14 Score=49.55 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=42.9
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 277 LVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+++||||||++... .-|...++|+++.+ ...+++.|.-+...+..+++.+...
T Consensus 2 i~~DlDGTLl~~~~------------------------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 2 IFTDLDGTLLPPGY------------------------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred EEEeCCCCCcCCCC------------------------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 68999999998421 13568899999984 6999999999988888888888754
No 106
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=93.83 E-value=0.078 Score=50.58 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=83.0
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCc------------H
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ------------S 340 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~------------~ 340 (455)
.+.|+||.||||.--... |. ... --..+.||+.+-|..+. ..|.+||+|..+ .
T Consensus 5 ~k~lflDRDGtin~d~~~------yv-----~~~---~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~ 70 (181)
T COG0241 5 QKALFLDRDGTINIDKGD------YV-----DSL---DDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFD 70 (181)
T ss_pred CcEEEEcCCCceecCCCc------cc-----CcH---HHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHH
Confidence 469999999999753211 10 000 01456899999999997 569999999843 3
Q ss_pred HHHHHHHHHHCCCCCeeeeEEEccc-----ceee---CCceeecccccCCCCCcEEEEECCchhhccCCCc---eeeecc
Q 012840 341 IYAAQLLDILDPDGKLISRRVYRES-----CIFS---DGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNN---GIPIES 409 (455)
Q Consensus 341 ~YAd~ILd~LDP~~~lfs~rL~Re~-----C~~~---~g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~N---gIpI~~ 409 (455)
.+-+.++..|--.+--|+.++++.| |.+. .|.+..-++..+.|+++.++|=|+..-..+.... ++.+..
T Consensus 71 ~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~ 150 (181)
T COG0241 71 KLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLT 150 (181)
T ss_pred HHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEc
Confidence 3444466677666667899999544 4433 3556666677789999999999996544322222 555555
Q ss_pred ccCC
Q 012840 410 WFDD 413 (455)
Q Consensus 410 f~dd 413 (455)
|.+.
T Consensus 151 ~~~~ 154 (181)
T COG0241 151 GIGV 154 (181)
T ss_pred Cccc
Confidence 5543
No 107
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=93.78 E-value=0.19 Score=48.77 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=44.2
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCC
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 352 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP 352 (455)
.+.+++||||||+.... .+-|...+-|+++. +...++|.|.-....+..+++.|+.
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK-----------------------TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALAL 59 (272)
T ss_pred ccEEEEeCCCceECCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCC
Confidence 35889999999997531 12455667788877 5689999998888888888888876
Q ss_pred CC
Q 012840 353 DG 354 (455)
Q Consensus 353 ~~ 354 (455)
..
T Consensus 60 ~~ 61 (272)
T PRK10530 60 DT 61 (272)
T ss_pred CC
Confidence 54
No 108
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=93.67 E-value=0.24 Score=46.94 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=45.7
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+.+++||||||+.+.. .+.|...+-|+++. +...++|.|.-....+.++++.+...
T Consensus 4 kli~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 4 KAIAIDIDGTITDKDR-----------------------RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred eEEEEecCCCcCCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 5889999999996421 13567788888888 56899999999999999999988765
Q ss_pred C
Q 012840 354 G 354 (455)
Q Consensus 354 ~ 354 (455)
.
T Consensus 61 ~ 61 (230)
T PRK01158 61 G 61 (230)
T ss_pred C
Confidence 4
No 109
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=93.64 E-value=0.14 Score=51.81 Aligned_cols=104 Identities=19% Similarity=0.339 Sum_probs=67.8
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCC---CCCeeeeEEEc-ccceee--CC----ceeec-----
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDP---DGKLISRRVYR-ESCIFS--DG----TYTKD----- 376 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP---~~~lfs~rL~R-e~C~~~--~g----~yiKD----- 376 (455)
+.+|||+.+||++|.+ ...++|+|+|...+++.+++.++- ....++.++-- ++-... .+ .+.|.
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~ 199 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVAL 199 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHH
Confidence 7889999999999984 599999999999999999998654 33455666643 222111 11 11221
Q ss_pred --ccccC--CCCCcEEEEECCchhhcc-----CCCceeeeccccCCCCch
Q 012840 377 --LTVLG--VDLAKVAIIDNSPQVFRL-----QVNNGIPIESWFDDPSDC 417 (455)
Q Consensus 377 --Ls~Lg--rdl~~vVIIDDsp~~~~~-----qp~NgIpI~~f~dd~~D~ 417 (455)
...++ .+.+++|+|-|+..-..+ +.+|.|.| .|..+.-+.
T Consensus 200 ~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i-gfln~~~e~ 248 (277)
T TIGR01544 200 RNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI-GYLNDRVDE 248 (277)
T ss_pred HHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE-EecccCHHH
Confidence 12335 678899999999975432 23444444 454444444
No 110
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=93.44 E-value=0.2 Score=48.57 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=44.1
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCC
Q 012840 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG 354 (455)
Q Consensus 277 LVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~ 354 (455)
+++||||||+.... .+.|...+.|+++. +.+.++|.|.-....+..+++.+....
T Consensus 2 i~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 2 IFIDLDGTLLNDDH-----------------------TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT 57 (256)
T ss_pred EEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 78999999997521 13567788888888 569999999999999999998887653
No 111
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=93.39 E-value=0.22 Score=47.19 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=43.2
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 277 LVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+++||||||+++... .-|-..+.|+.+. +...++|.|.-....+..+++.+...
T Consensus 2 i~~DlDGTLL~~~~~-----------------------~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-----------------------DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCC-----------------------CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 789999999975310 1223678999988 46899999999999999999998754
No 112
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=93.21 E-value=0.23 Score=48.68 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=44.4
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+.+++||||||+.+.. .+-|...+-|+++. +...++|-|.-....+.++++.++..
T Consensus 3 kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH-----------------------HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred cEEEEeCCCcCcCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 4889999999997521 13456677788887 56889999988888888888888765
Q ss_pred C
Q 012840 354 G 354 (455)
Q Consensus 354 ~ 354 (455)
.
T Consensus 60 ~ 60 (272)
T PRK15126 60 A 60 (272)
T ss_pred C
Confidence 4
No 113
>PRK10976 putative hydrolase; Provisional
Probab=93.19 E-value=0.24 Score=48.28 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=43.3
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+.+++||||||+++.. .+-|...+-|+++. +...++|.|.-....+.++++.|+..
T Consensus 3 kli~~DlDGTLl~~~~-----------------------~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 3 QVVASDLDGTLLSPDH-----------------------TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred eEEEEeCCCCCcCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 5889999999997631 12455667777777 56888888888888888888888765
Q ss_pred C
Q 012840 354 G 354 (455)
Q Consensus 354 ~ 354 (455)
.
T Consensus 60 ~ 60 (266)
T PRK10976 60 S 60 (266)
T ss_pred C
Confidence 4
No 114
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=92.73 E-value=0.023 Score=53.36 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=42.2
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCcHH-H---HHHHHHHHCCC--CCeeeeEEEcccceeeCCceeecccccCCCCC
Q 012840 313 VKQRPHLKTFLERVAEM-FEVVIFTASQSI-Y---AAQLLDILDPD--GKLISRRVYRESCIFSDGTYTKDLTVLGVDLA 385 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~-YEIvIfTas~~~-Y---Ad~ILd~LDP~--~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~ 385 (455)
...=||+.+.|++|.+. |++++-|+.... + +..-.+.|+.. +......++..+ |. .++.|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~---------K~--~v~~D-- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD---------KT--LVGGD-- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS---------GG--GC--S--
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC---------CC--eEecc--
Confidence 55669999999999966 588877777544 1 22222222211 111222222111 22 34444
Q ss_pred cEEEEECCchhhccCCCceeee
Q 012840 386 KVAIIDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 386 ~vVIIDDsp~~~~~qp~NgIpI 407 (455)
|+|||++.....-...|+++
T Consensus 139 --vlIDD~~~n~~~~~~~g~~~ 158 (191)
T PF06941_consen 139 --VLIDDRPHNLEQFANAGIPV 158 (191)
T ss_dssp --EEEESSSHHHSS-SSESSEE
T ss_pred --EEecCChHHHHhccCCCceE
Confidence 79999999887666677444
No 115
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.53 E-value=0.15 Score=55.19 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=72.4
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEeccee-eeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKE-HTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLD 348 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~-~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd 348 (455)
...++.||||||+||.--. -..|-.-.+.+.... ..-| --+++|...+. +.+=+.|.|-....-|..+..
T Consensus 219 g~~kK~LVLDLDNTLWGGV----IGedGv~GI~Ls~~~~G~~f----k~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~ 290 (574)
T COG3882 219 GKSKKALVLDLDNTLWGGV----IGEDGVDGIRLSNSAEGEAF----KTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFR 290 (574)
T ss_pred CcccceEEEecCCcccccc----cccccccceeecCCCCchhH----HHHHHHHHHHHhccEEEEEecCCchhhHHHHHh
Confidence 4457799999999995443 222211112111100 0000 02456666666 568888888888888888776
Q ss_pred HHCCCCCeeeeEEEccc------ceeeC--CceeecccccCCCCCcEEEEECCchhhccCCCce-eeecccc
Q 012840 349 ILDPDGKLISRRVYRES------CIFSD--GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNG-IPIESWF 411 (455)
Q Consensus 349 ~LDP~~~lfs~rL~Re~------C~~~~--g~yiKDLs~Lgrdl~~vVIIDDsp~~~~~qp~Ng-IpI~~f~ 411 (455)
+- | +-+.+++ |.+.+ .+..|-.++|+-.++..|+|||+|.....-..++ +.|..|-
T Consensus 291 kh-p------~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~v~Vi~~~ 355 (574)
T COG3882 291 KH-P------DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKRELPVSVIEFP 355 (574)
T ss_pred hC-C------CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcCceeeccCC
Confidence 42 1 1222221 22221 2445667788999999999999997764433332 5555554
No 116
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=92.51 E-value=0.29 Score=45.08 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=41.8
Q ss_pred EEEeccccccccccc-ccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHH---HHHHHH
Q 012840 277 LVLDLDETLVHSTLE-YCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAA---QLLDIL 350 (455)
Q Consensus 277 LVLDLDeTLVhS~~~-~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd---~ILd~L 350 (455)
+++|+||||+.+... ... + ..... +..|++.++++++. +.|.+++.|+.....+. +.+..+
T Consensus 2 VisDIDGTL~~sd~~~~~~------~----~~~~~---~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~ 67 (157)
T smart00775 2 VISDIDGTITKSDVLGHVV------P----IIGKD---WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQI 67 (157)
T ss_pred EEEecCCCCcccccccccc------c----ccccC---cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHh
Confidence 789999999987411 100 0 00111 34799999999999 57999999998877765 555553
No 117
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=92.44 E-value=0.3 Score=46.08 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=63.4
Q ss_pred CCCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhccc-E--EEEEcCCc-------
Q 012840 270 QGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMF-E--VVIFTASQ------- 339 (455)
Q Consensus 270 ~~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~Y-E--IvIfTas~------- 339 (455)
...+-+.||||+|+||+.-.. -..-|.+.+.++++.+.| . |+|.|.+.
T Consensus 37 k~~Gik~li~DkDNTL~~~~~----------------------~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~ 94 (168)
T PF09419_consen 37 KKKGIKALIFDKDNTLTPPYE----------------------DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPD 94 (168)
T ss_pred hhcCceEEEEcCCCCCCCCCc----------------------CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCcc
Confidence 456677999999999975321 124678889999999765 3 99999984
Q ss_pred HHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccC-----CCCCcEEEEECCch
Q 012840 340 SIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLG-----VDLAKVAIIDNSPQ 395 (455)
Q Consensus 340 ~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lg-----rdl~~vVIIDDsp~ 395 (455)
..-|+.+-+.|... .+.|+ +. .++.+.+-++.++ ..++.+++|-|+..
T Consensus 95 ~~~a~~~~~~lgIp--vl~h~-----~k-KP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~ 147 (168)
T PF09419_consen 95 GERAEALEKALGIP--VLRHR-----AK-KPGCFREILKYFKCQKVVTSPSEIAVIGDRLF 147 (168)
T ss_pred HHHHHHHHHhhCCc--EEEeC-----CC-CCccHHHHHHHHhhccCCCCchhEEEEcchHH
Confidence 67788888888643 23222 21 1233323333332 35889999999873
No 118
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=92.19 E-value=0.35 Score=47.16 Aligned_cols=54 Identities=26% Similarity=0.223 Sum_probs=43.2
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 277 LVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+++||||||++.... .-+...++|+.+.+ .+.+++.|.-....+..+++.++..
T Consensus 2 i~~DlDGTll~~~~~-----------------------~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 2 IFTDLDGTLLDPHGY-----------------------DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred EEEcCCCCCcCCCCc-----------------------CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 789999999986310 12457899999985 5999999999999999999998753
No 119
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=92.15 E-value=0.37 Score=45.39 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=41.6
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 277 LVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+++||||||+++.. .+.|-..+-|+++. +...+++.|.-....+.++++.|...
T Consensus 1 i~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 1 IASDIDGTLTDPNR-----------------------AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred CeEeccCccCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 57999999997631 13456667788887 56899999998888888888888743
No 120
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=92.01 E-value=0.41 Score=43.18 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=41.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEE
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 362 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~ 362 (455)
+.++||+.++|+++. +.+.++|.|++.+.|++.+++.++... +|..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~-~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD-VFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch-heeeeEE
Confidence 567999999999997 569999999999999999999987663 5665554
No 121
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=92.00 E-value=0.21 Score=49.40 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=41.9
Q ss_pred EeeCchHHHHHHHhh---cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEE
Q 012840 313 VKQRPHLKTFLERVA---EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 362 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls---k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~ 362 (455)
+..-||..+|++.++ ..++++|-|-+..-|.+.+|+.-+... +|+.++.
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~~I~T 121 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFSEIFT 121 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccceEEe
Confidence 778999999999995 379999999999999999999988764 5655444
No 122
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=91.42 E-value=0.39 Score=44.83 Aligned_cols=54 Identities=31% Similarity=0.375 Sum_probs=43.1
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHHC
Q 012840 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILD 351 (455)
Q Consensus 276 tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~-YEIvIfTas~~~YAd~ILd~LD 351 (455)
.|++|+||||+.... ....|.+.+.|++|.+. ..++|.|.....++..+++.++
T Consensus 1 li~~D~DgTL~~~~~----------------------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA----------------------HELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCCCC----------------------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 378999999997420 02358889999999854 8999999999999999998753
No 123
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=91.25 E-value=0.34 Score=49.51 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=41.1
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-----ccEEEEEcCCc----HHHHHH
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-----MFEVVIFTASQ----SIYAAQ 345 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-----~YEIvIfTas~----~~YAd~ 345 (455)
+.++||+||||+++. ..-|++.+||+.|.. .+.++++|... +.+++.
T Consensus 1 ~~~ifD~DGvL~~g~------------------------~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~ 56 (321)
T TIGR01456 1 FGFAFDIDGVLFRGK------------------------KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEE 56 (321)
T ss_pred CEEEEeCcCceECCc------------------------cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHH
Confidence 368999999999873 125899999999986 78889999764 567777
Q ss_pred HHHHHC
Q 012840 346 LLDILD 351 (455)
Q Consensus 346 ILd~LD 351 (455)
+.+.++
T Consensus 57 l~~~lG 62 (321)
T TIGR01456 57 ISSLLG 62 (321)
T ss_pred HHHHcC
Confidence 766654
No 124
>PRK10444 UMP phosphatase; Provisional
Probab=91.12 E-value=0.31 Score=48.15 Aligned_cols=52 Identities=23% Similarity=0.384 Sum_probs=41.1
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHC
Q 012840 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILD 351 (455)
Q Consensus 276 tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LD 351 (455)
.+++||||||++.. ..=||+.+||++|. +...+++.|.....-...+++.|.
T Consensus 3 ~v~~DlDGtL~~~~------------------------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~ 55 (248)
T PRK10444 3 NVICDIDGVLMHDN------------------------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFA 55 (248)
T ss_pred EEEEeCCCceEeCC------------------------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 78999999998862 12589999999998 479999999988766666666653
No 125
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=90.89 E-value=0.13 Score=49.77 Aligned_cols=89 Identities=10% Similarity=0.113 Sum_probs=62.1
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEEE
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~---~g~yiKDLs~Lgrdl~~vVI 389 (455)
+..-||+.++|+.|.+.|.++|.|++... ++.++.. .||+..+..+..... ...|.+-+..+|.+++++++
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~ 185 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILH 185 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-HhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEE
Confidence 44559999999999988999999998765 2444433 478777765443222 23456667788999999999
Q ss_pred EECCc-hhhccCCCceeee
Q 012840 390 IDNSP-QVFRLQVNNGIPI 407 (455)
Q Consensus 390 IDDsp-~~~~~qp~NgIpI 407 (455)
|.|++ .-......+|+..
T Consensus 186 VGD~~~~Di~~A~~aG~~~ 204 (238)
T PRK10748 186 VGDDLTTDVAGAIRCGMQA 204 (238)
T ss_pred EcCCcHHHHHHHHHCCCeE
Confidence 98884 4444444566654
No 126
>PTZ00174 phosphomannomutase; Provisional
Probab=90.82 E-value=0.6 Score=45.62 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=37.4
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHH
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLD 348 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd 348 (455)
.+.+++||||||+++... +-|...+-|+++. +...++|.|.-...-+...+.
T Consensus 5 ~klia~DlDGTLL~~~~~-----------------------is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRNP-----------------------ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CeEEEEECcCCCcCCCCC-----------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 468999999999987321 3466778888888 558888888876654444443
No 127
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=90.43 E-value=0.31 Score=48.48 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=68.3
Q ss_pred EEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcc---------------cceeeCCce--
Q 012840 312 YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRE---------------SCIFSDGTY-- 373 (455)
Q Consensus 312 ~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re---------------~C~~~~g~y-- 373 (455)
+...=|.+-+|++.+. +..-++..|+....|...-++.|---|--|+...+++ .-.+.+|..
T Consensus 79 ~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft 158 (252)
T PF11019_consen 79 MELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFT 158 (252)
T ss_pred eEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEe
Confidence 3566789999999999 6799999999999999998888754443343332211 111223321
Q ss_pred ---------eecccccCCCCCcEEEEECCchhh----ccCCCceeeeccccC
Q 012840 374 ---------TKDLTVLGVDLAKVAIIDNSPQVF----RLQVNNGIPIESWFD 412 (455)
Q Consensus 374 ---------iKDLs~Lgrdl~~vVIIDDsp~~~----~~qp~NgIpI~~f~d 412 (455)
..=|..+|..++++|+|||+.... ..-...+|..-.|+-
T Consensus 159 ~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Y 210 (252)
T PF11019_consen 159 GGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHY 210 (252)
T ss_pred CCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEE
Confidence 122445699999999999999765 122337777777654
No 128
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=90.40 E-value=0.59 Score=46.52 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=42.7
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc--ccEEEEEcCCcHHHHHHHHHHH
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLDIL 350 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk--~YEIvIfTas~~~YAd~ILd~L 350 (455)
+..|++|+||||+.....+.. ...-|.+.+-|+.|.+ ...++|.|.-...-+..++..+
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~------------------~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQ------------------VVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPY 74 (266)
T ss_pred CEEEEEecCCCCCCCCCCccc------------------ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcc
Confidence 578999999999975422211 1234788888999985 5788888888888777776544
No 129
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=90.20 E-value=0.77 Score=47.16 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=44.0
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+.+++||||||+..... .-+-+.+-|++|. +...+++.|+-+..-...+.+.|...
T Consensus 2 KLIftDLDGTLLd~~~~-----------------------~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 2 RLVLSSLDGSLLDLEFN-----------------------SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred cEEEEeCCCCCcCCCCc-----------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 47899999999985311 1234677788888 56999999999888888888888765
Q ss_pred C
Q 012840 354 G 354 (455)
Q Consensus 354 ~ 354 (455)
.
T Consensus 59 ~ 59 (302)
T PRK12702 59 H 59 (302)
T ss_pred C
Confidence 4
No 130
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=90.02 E-value=0.35 Score=47.75 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=34.5
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHH
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSI 341 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~ 341 (455)
+.++|||||||++..... =..=|++.++|+++. +...+++.|.....
T Consensus 2 k~i~~D~DGtl~~~~~~~--------------------~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKS--------------------GVAVPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred CEEEEeCCCeEEeCCCcc--------------------cCcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 378999999998763100 002589999999999 56999999975444
No 131
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=89.80 E-value=0.41 Score=44.43 Aligned_cols=85 Identities=25% Similarity=0.277 Sum_probs=57.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEc-ccceee---CC--ce--eec--c----
Q 012840 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYR-ESCIFS---DG--TY--TKD--L---- 377 (455)
Q Consensus 313 V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~R-e~C~~~---~g--~y--iKD--L---- 377 (455)
..++|++.++|+++. +.+.++|.|++...+++.+++.++-.. +|..++.. ++-.+. .| .+ .|- +
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 357999999999998 469999999999999999999998765 66654432 210111 00 00 011 2
Q ss_pred cccCCCCCcEEEEECCchhhc
Q 012840 378 TVLGVDLAKVAIIDNSPQVFR 398 (455)
Q Consensus 378 s~Lgrdl~~vVIIDDsp~~~~ 398 (455)
...+.+++.++.+-|++.-..
T Consensus 165 ~~~~~~~~~~~~~gDs~~D~~ 185 (202)
T TIGR01490 165 AEEQIDLKDSYAYGDSISDLP 185 (202)
T ss_pred HHcCCCHHHcEeeeCCcccHH
Confidence 233566777888888775443
No 132
>PLN02645 phosphoglycolate phosphatase
Probab=89.53 E-value=0.45 Score=48.30 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=39.0
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHH
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 350 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~L 350 (455)
-..++||+||||++.. .+ =||+.++|+++. +...+++.|.....-...+++.|
T Consensus 28 ~~~~~~D~DGtl~~~~----------------------~~--~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 28 VETFIFDCDGVIWKGD----------------------KL--IEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred CCEEEEeCcCCeEeCC----------------------cc--CcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 3489999999998742 01 289999999998 67999999998744444444333
No 133
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=89.15 E-value=1.1 Score=41.60 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=51.3
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCcHHH--HHHHHHHHCCCCCee--eeEEEcccceeeCCceeecccccCCCCCcEE
Q 012840 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIY--AAQLLDILDPDGKLI--SRRVYRESCIFSDGTYTKDLTVLGVDLAKVA 388 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk~YEIvIfTas~~~Y--Ad~ILd~LDP~~~lf--s~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vV 388 (455)
...-||+++-+++|-++|+|+|-||++..| ...-.+.|--.-.++ ++.+++. ..+.+| -=+
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCg-----nKnivk----------aDi 131 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCG-----NKNIVK----------ADI 131 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEec-----CCCeEE----------eeE
Confidence 567899999999999999999999995433 222233321111112 1223321 112222 136
Q ss_pred EEECCchhhccCCCceeeeccccCC
Q 012840 389 IIDNSPQVFRLQVNNGIPIESWFDD 413 (455)
Q Consensus 389 IIDDsp~~~~~qp~NgIpI~~f~dd 413 (455)
+|||.|........|-|....-+.-
T Consensus 132 lIDDnp~nLE~F~G~kIlFdA~HN~ 156 (180)
T COG4502 132 LIDDNPLNLENFKGNKILFDAHHNK 156 (180)
T ss_pred EecCCchhhhhccCceEEEeccccc
Confidence 8999998776666676766655543
No 134
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=88.48 E-value=0.63 Score=46.30 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=32.4
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCc
Q 012840 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ 339 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~ 339 (455)
..+++|+||||++.. ..-||+.++|++|. +...+++.|...
T Consensus 3 ~~~~~D~DGtl~~~~------------------------~~~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 3 QGFIFDCDGVLWLGE------------------------RVVPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cEEEEeCCCceEcCC------------------------eeCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 378999999997752 12488999999998 468999999854
No 135
>PLN02423 phosphomannomutase
Probab=87.84 E-value=1.2 Score=43.67 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=36.0
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCC
Q 012840 273 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDP 352 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP 352 (455)
.+..+++||||||+.+... +-|...+-|++|.+...+++.|.-. | ..+.+.+.+
T Consensus 6 ~~~i~~~D~DGTLl~~~~~-----------------------i~~~~~~ai~~l~~~i~fviaTGR~--~-~~~~~~~~~ 59 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRKE-----------------------ATPEMLEFMKELRKVVTVGVVGGSD--L-SKISEQLGK 59 (245)
T ss_pred cceEEEEeccCCCcCCCCc-----------------------CCHHHHHHHHHHHhCCEEEEECCcC--H-HHHHHHhcc
Confidence 3456669999999976311 2466778899998777777777652 2 245455544
No 136
>PLN02887 hydrolase family protein
Probab=87.31 E-value=1.4 Score=49.17 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=46.3
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHH
Q 012840 272 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 350 (455)
Q Consensus 272 ~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~L 350 (455)
.+.+.+++||||||+++.. .+-|...+-|+++. +...++|.|.-...-+..+++.|
T Consensus 306 ~~iKLIa~DLDGTLLn~d~-----------------------~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L 362 (580)
T PLN02887 306 PKFSYIFCDMDGTLLNSKS-----------------------QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMV 362 (580)
T ss_pred cCccEEEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh
Confidence 3456899999999997631 12456677788887 67999999999998888999988
Q ss_pred CCC
Q 012840 351 DPD 353 (455)
Q Consensus 351 DP~ 353 (455)
+..
T Consensus 363 ~l~ 365 (580)
T PLN02887 363 DLA 365 (580)
T ss_pred Ccc
Confidence 754
No 137
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=87.13 E-value=1.2 Score=43.34 Aligned_cols=60 Identities=25% Similarity=0.081 Sum_probs=39.9
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhccc-EEEEEcCCcHHHHHHHHHHHCC
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMF-EVVIFTASQSIYAAQLLDILDP 352 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~Y-EIvIfTas~~~YAd~ILd~LDP 352 (455)
++.++.||||||+.+.... -...|.+.+.++.+.+.. .+++-|.-+..-+.++++.+.+
T Consensus 1 ~~li~tDlDGTLl~~~~~~--------------------~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~ 60 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDGD--------------------NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPL 60 (249)
T ss_pred CeEEEEcCCCcCcCCCCCC--------------------hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCC
Confidence 3678999999999632100 123578888888877554 6666666666667777666654
Q ss_pred C
Q 012840 353 D 353 (455)
Q Consensus 353 ~ 353 (455)
.
T Consensus 61 ~ 61 (249)
T TIGR01485 61 L 61 (249)
T ss_pred C
Confidence 4
No 138
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=86.80 E-value=2.3 Score=48.29 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=46.0
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDI 349 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~ 349 (455)
..+++.+++||||||++.... +. +...+-|+.+. +...++|.|.-....+..+++.
T Consensus 413 ~~~~KLIfsDLDGTLLd~d~~---------------------i~--~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~ 469 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNPLTY---------------------SY--STALDALRLLKDKELPLVFCSAKTMGEQDLYRNE 469 (694)
T ss_pred CceeeEEEEECcCCCcCCCCc---------------------cC--HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH
Confidence 456789999999999986311 11 23456678887 5699999999999999999999
Q ss_pred HCCC
Q 012840 350 LDPD 353 (455)
Q Consensus 350 LDP~ 353 (455)
|+..
T Consensus 470 Lgl~ 473 (694)
T PRK14502 470 LGIK 473 (694)
T ss_pred cCCC
Confidence 8754
No 139
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=86.22 E-value=1.1 Score=44.03 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=36.3
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCc---HHHHHHHHHHHC
Q 012840 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ---SIYAAQLLDILD 351 (455)
Q Consensus 276 tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~---~~YAd~ILd~LD 351 (455)
.+++|+||||++... .=|++.++|+++. +...+++.|... ..-..+.++.+.
T Consensus 3 ~~~~D~DGtl~~~~~------------------------~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g 58 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE------------------------RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFD 58 (249)
T ss_pred EEEEeCCCceEcCCe------------------------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcC
Confidence 789999999987521 1368899999998 568888988633 333334445454
Q ss_pred C
Q 012840 352 P 352 (455)
Q Consensus 352 P 352 (455)
.
T Consensus 59 ~ 59 (249)
T TIGR01457 59 I 59 (249)
T ss_pred C
Confidence 3
No 140
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=83.98 E-value=1.1 Score=44.83 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=40.9
Q ss_pred CCCceEEEEecccccccccc----cccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEE-cCCcHHH-HH
Q 012840 271 GRKSVTLVLDLDETLVHSTL----EYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIF-TASQSIY-AA 344 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~----~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIf-Tas~~~Y-Ad 344 (455)
+.|++.+|+|||||.+.-+- .-..+..|+-.. .+.--..---+.=||+.+||+++-++--.|.| |.-.+.- .+
T Consensus 76 k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~-Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~ 154 (274)
T COG2503 76 KGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPET-WDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKD 154 (274)
T ss_pred cCCCceEEEecchHhhcCccccchhhhcCCCCCccc-hHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccc
Confidence 45667999999999998652 111122221000 00000000134569999999999866444444 4333333 33
Q ss_pred HHHHHH
Q 012840 345 QLLDIL 350 (455)
Q Consensus 345 ~ILd~L 350 (455)
.-++-|
T Consensus 155 ~T~~nL 160 (274)
T COG2503 155 GTIENL 160 (274)
T ss_pred hhHHHH
Confidence 333333
No 141
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=83.81 E-value=1.4 Score=44.51 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=40.2
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCcHH----HHHHHHH
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSI----YAAQLLD 348 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~----YAd~ILd 348 (455)
..++++||||||++-. ..=||+.+||++|.+ .-.+++-|.+..+ |+.++..
T Consensus 8 y~~~l~DlDGvl~~G~------------------------~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~ 63 (269)
T COG0647 8 YDGFLFDLDGVLYRGN------------------------EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSS 63 (269)
T ss_pred cCEEEEcCcCceEeCC------------------------ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 3478999999998763 124999999999995 4888888988754 5555555
Q ss_pred HHCC
Q 012840 349 ILDP 352 (455)
Q Consensus 349 ~LDP 352 (455)
...+
T Consensus 64 ~~~~ 67 (269)
T COG0647 64 LGGV 67 (269)
T ss_pred hcCC
Confidence 3333
No 142
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=83.63 E-value=1.4 Score=42.82 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=37.3
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCC----cHHHHHHHHHHH
Q 012840 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTAS----QSIYAAQLLDIL 350 (455)
Q Consensus 277 LVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas----~~~YAd~ILd~L 350 (455)
++||+||||+.... .=|++.++|+.+.+ .+.+++-|.+ ...+++.+.+.+
T Consensus 1 ~lfD~DGvL~~~~~------------------------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~ 55 (236)
T TIGR01460 1 FLFDIDGVLWLGHK------------------------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLL 55 (236)
T ss_pred CEEeCcCccCcCCc------------------------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999988631 13689999999985 5899998844 456777777744
No 143
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=83.56 E-value=0.57 Score=46.39 Aligned_cols=41 Identities=17% Similarity=0.420 Sum_probs=35.8
Q ss_pred EeeCchHHHHHHHhhc--ccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 313 VKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk--~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+-.-||+-+.++.+++ .||++|-+-+..-+.+.+|++.+-.
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~ 125 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH 125 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH
Confidence 5667999999999985 3899999999999999999997643
No 144
>PLN02151 trehalose-phosphatase
Probab=82.01 E-value=2.6 Score=44.27 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=45.1
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLD 348 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd 348 (455)
..++..|+||+||||+--...+ -.+..-|.+.+-|+.|++.+.++|-|--...-.+.++.
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~P------------------~~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDDP------------------DRAFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cCCceEEEEecCccCCCCCCCc------------------ccccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHcC
Confidence 3467899999999998432111 12345789999999999989999999888777776664
No 145
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=81.61 E-value=4.2 Score=40.28 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=53.4
Q ss_pred CCceEEEEeccccccccccccc----CCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHH
Q 012840 272 RKSVTLVLDLDETLVHSTLEYC----DDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQL 346 (455)
Q Consensus 272 ~kk~tLVLDLDeTLVhS~~~~~----~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~I 346 (455)
.++..+|||+|||++....-.. ....|.-. .+..-...---..-|++.+|++++. +.++|++.|.-........
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~-~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T 153 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPT-AFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNAT 153 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCHH-HHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHH
Confidence 5778999999999998752110 11111000 0000000001345799999999997 6799999999988775555
Q ss_pred HHHHCCCCCe-eeeEEEcc
Q 012840 347 LDILDPDGKL-ISRRVYRE 364 (455)
Q Consensus 347 Ld~LDP~~~l-fs~rL~Re 364 (455)
++.|.-.|-. +.+.+.|.
T Consensus 154 ~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 154 LDNLINAGFTGWKHLILRG 172 (229)
T ss_pred HHHHHHcCCCCcCeeeecC
Confidence 5555444311 24445564
No 146
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=80.68 E-value=1.6 Score=42.63 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=32.6
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEE--EEcCC
Q 012840 273 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVV--IFTAS 338 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIv--IfTas 338 (455)
|+..|+||+||||+-....+. ....=|++.+.|+.|++....+ |-|.-
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~------------------~~~~~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPD------------------AAVVSDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred CcEEEEEecCccccCCcCCCc------------------ccCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 567899999999986421110 1234689999999999876544 44444
No 147
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=80.64 E-value=3.3 Score=41.88 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=46.0
Q ss_pred CCCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccE--EEEEcCCcHHHHHHHH
Q 012840 270 QGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFE--VVIFTASQSIYAAQLL 347 (455)
Q Consensus 270 ~~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YE--IvIfTas~~~YAd~IL 347 (455)
...++.+++||.||||++....+.. +..=+++.+.|..|+..+. ++|.|.-+..-.+..+
T Consensus 14 ~~a~~~~~~lDyDGTl~~i~~~p~~------------------a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~ 75 (266)
T COG1877 14 LNARKRLLFLDYDGTLTEIVPHPEA------------------AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLF 75 (266)
T ss_pred ccccceEEEEeccccccccccCccc------------------cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhc
Confidence 3456779999999999987544321 3345788999999998888 7777777777777766
Q ss_pred H
Q 012840 348 D 348 (455)
Q Consensus 348 d 348 (455)
.
T Consensus 76 ~ 76 (266)
T COG1877 76 G 76 (266)
T ss_pred C
Confidence 6
No 148
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=80.54 E-value=2.3 Score=44.50 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=44.3
Q ss_pred EEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHH-C------CCCCeeeeEEE
Q 012840 311 VYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL-D------PDGKLISRRVY 362 (455)
Q Consensus 311 v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~L-D------P~~~lfs~rL~ 362 (455)
-||.+-||+.++|+++. +.+.+.|-|++...|++.+++.+ + .+..+|+..+.
T Consensus 181 ~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt 240 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIV 240 (343)
T ss_pred HHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEe
Confidence 46888999999999998 56999999999999999999997 5 34567775555
No 149
>PLN02580 trehalose-phosphatase
Probab=80.21 E-value=3.3 Score=43.95 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=47.2
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDI 349 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~ 349 (455)
..++..|+||.||||.--...+ --+..=|++.+-|+.|++.+.++|-|--...-.+.++..
T Consensus 116 ~~k~~~LfLDyDGTLaPIv~~P------------------d~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~~ 176 (384)
T PLN02580 116 KGKKIALFLDYDGTLSPIVDDP------------------DRALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVGL 176 (384)
T ss_pred hcCCeEEEEecCCccCCCCCCc------------------ccccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhCC
Confidence 4567899999999997543221 124556899999999999999999999988887777653
No 150
>PLN03017 trehalose-phosphatase
Probab=80.12 E-value=3.3 Score=43.76 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=44.0
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLD 348 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd 348 (455)
..++..|+||+||||+--...+ + ....-|.+.+-|++|++.+.++|-|--...-+..++.
T Consensus 108 ~~k~~llflD~DGTL~Piv~~p----~--------------~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSPIVDDP----D--------------KAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred cCCCeEEEEecCCcCcCCcCCc----c--------------cccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhhc
Confidence 3467899999999998322111 0 0234588889999999999999999888887777643
No 151
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=78.61 E-value=1.2 Score=40.67 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=14.0
Q ss_pred ceEEEEeccccccccc
Q 012840 274 SVTLVLDLDETLVHST 289 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~ 289 (455)
.+.++||+||||++|.
T Consensus 5 ~~~viFD~DGTLiDs~ 20 (188)
T PRK10725 5 YAGLIFDMDGTILDTE 20 (188)
T ss_pred ceEEEEcCCCcCccCH
Confidence 3578999999999986
No 152
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=78.58 E-value=2.3 Score=39.12 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=58.3
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEccc-ceeeCCceeecccccCCCCCcEEE
Q 012840 312 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRES-CIFSDGTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 312 ~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~-C~~~~g~yiKDLs~Lgrdl~~vVI 389 (455)
.-.+||++.++|++|.+ .+.++|.|......|..+.+.+.... ..++-+. +.-.+..+.+-++.|+.+.+.|+.
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~----~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~ 200 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD----SIVFARVIGKPEPKIFLRIIKELQVKPGEVAM 200 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS----EEEEESHETTTHHHHHHHHHHHHTCTGGGEEE
T ss_pred cCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc----ccccccccccccchhHHHHHHHHhcCCCEEEE
Confidence 45689999999999996 49999999999999999999998743 2222111 111111334555667878889999
Q ss_pred EECCch
Q 012840 390 IDNSPQ 395 (455)
Q Consensus 390 IDDsp~ 395 (455)
|-|...
T Consensus 201 vGDg~n 206 (215)
T PF00702_consen 201 VGDGVN 206 (215)
T ss_dssp EESSGG
T ss_pred EccCHH
Confidence 999863
No 153
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=78.46 E-value=2 Score=42.14 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=40.5
Q ss_pred CCceEEEEeccccccccccc----c-----cCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHH
Q 012840 272 RKSVTLVLDLDETLVHSTLE----Y-----CDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSI 341 (455)
Q Consensus 272 ~kk~tLVLDLDeTLVhS~~~----~-----~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~ 341 (455)
.++..+|||+||||+..... . ....+|.-.+ .... -..=||+.+|++++. ..++|++-|.-...
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv--~~~~----~~aip~a~~l~~~~~~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWV--ASGK----APAIPGALELYNYARSRGVKVFFITGRPES 143 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHH--HCTG----GEEETTHHHHHHHHHHTTEEEEEEEEEETT
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHH--hccc----CcccHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 56789999999999954321 0 0111111000 0000 133488999999998 56899888876554
Q ss_pred HHHHH
Q 012840 342 YAAQL 346 (455)
Q Consensus 342 YAd~I 346 (455)
.-+.-
T Consensus 144 ~r~~T 148 (229)
T PF03767_consen 144 QREAT 148 (229)
T ss_dssp CHHHH
T ss_pred hHHHH
Confidence 33333
No 154
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=77.96 E-value=3.9 Score=45.17 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=57.7
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEE
Q 012840 312 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAII 390 (455)
Q Consensus 312 ~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVII 390 (455)
.-.+||++.++|++|.+ .++++|-|...+.+|+.+++.+.-+ +|.... ...+...+ ..+....++++.|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~~~~~-----p~~K~~~v---~~l~~~~~~v~~V 472 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VRAEVL-----PDDKAALI---KELQEKGRVVAMV 472 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EEccCC-----hHHHHHHH---HHHHHcCCEEEEE
Confidence 35689999999999985 6999999999999999999999764 222110 00111122 2334456789999
Q ss_pred ECCchhhccCCCceeee
Q 012840 391 DNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 391 DDsp~~~~~qp~NgIpI 407 (455)
-|...-...-...++.|
T Consensus 473 GDg~nD~~al~~A~vgi 489 (562)
T TIGR01511 473 GDGINDAPALAQADVGI 489 (562)
T ss_pred eCCCccHHHHhhCCEEE
Confidence 98876553332334444
No 155
>PRK11587 putative phosphatase; Provisional
Probab=77.74 E-value=1.2 Score=42.24 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=13.7
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
+.++|||||||++|.
T Consensus 4 k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 4 KGFLFDLDGTLVDSL 18 (218)
T ss_pred CEEEEcCCCCcCcCH
Confidence 489999999999986
No 156
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=76.01 E-value=6.8 Score=38.07 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=37.8
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHHCCCC
Q 012840 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDG 354 (455)
Q Consensus 313 V~lRPgl~eFLe~Lsk-~YEIvIfTas~~~YAd~ILd~LDP~~ 354 (455)
+++|||.++|.+++.+ --.++|-++|+..|..+++..+--+.
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke 114 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKE 114 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcccc
Confidence 8899999999999995 58999999999999999999886443
No 157
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=75.20 E-value=1.3 Score=41.28 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=12.7
Q ss_pred EEEEeccccccccc
Q 012840 276 TLVLDLDETLVHST 289 (455)
Q Consensus 276 tLVLDLDeTLVhS~ 289 (455)
.++|||||||+.|.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 57999999999986
No 158
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=73.59 E-value=1.8 Score=39.67 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=12.5
Q ss_pred EEEEeccccccccc
Q 012840 276 TLVLDLDETLVHST 289 (455)
Q Consensus 276 tLVLDLDeTLVhS~ 289 (455)
.++|||||||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999885
No 159
>PRK11590 hypothetical protein; Provisional
Probab=73.10 E-value=2 Score=40.90 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=34.9
Q ss_pred EeeCchHHHHH-HHhh-cccEEEEEcCCcHHHHHHHHHHHC
Q 012840 313 VKQRPHLKTFL-ERVA-EMFEVVIFTASQSIYAAQLLDILD 351 (455)
Q Consensus 313 V~lRPgl~eFL-e~Ls-k~YEIvIfTas~~~YAd~ILd~LD 351 (455)
+..+||+.+.| +.+. +.+.++|-|++...|+++++..+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 45689999999 5677 589999999999999999999976
No 160
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=72.19 E-value=2.1 Score=40.11 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=13.4
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
..++|||||||+++.
T Consensus 3 ~~viFDlDGTL~ds~ 17 (221)
T TIGR02253 3 KAIFFDLDDTLIDTS 17 (221)
T ss_pred eEEEEeCCCCCcCCC
Confidence 478999999999985
No 161
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=71.07 E-value=2.2 Score=40.19 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.4
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
++++|||||||+.+.
T Consensus 2 k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 2 SLVVLDMAGTTVDED 16 (220)
T ss_pred cEEEEecCCCeeccC
Confidence 478999999999986
No 162
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=70.91 E-value=2.1 Score=38.78 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=13.5
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
+.++||+||||+.+.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 478999999999986
No 163
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=70.81 E-value=2.1 Score=41.15 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=13.7
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
+.+|||+||||+.|.
T Consensus 13 k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 13 RAVLFDLDGTLLDSA 27 (229)
T ss_pred CEEEEcCcCccccCH
Confidence 489999999999996
No 164
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=70.16 E-value=2.3 Score=42.37 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=14.0
Q ss_pred ceEEEEeccccccccc
Q 012840 274 SVTLVLDLDETLVHST 289 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~ 289 (455)
++.++|||||||+++.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 3499999999999995
No 165
>PRK11590 hypothetical protein; Provisional
Probab=70.13 E-value=6.7 Score=37.30 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=13.9
Q ss_pred CceEEEEeccccccccc
Q 012840 273 KSVTLVLDLDETLVHST 289 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~ 289 (455)
+++.++|||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 45699999999999654
No 166
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=69.68 E-value=15 Score=36.70 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=41.3
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCC
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 352 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP 352 (455)
.+.+++|||+|||-...+..+ +...|.++. ..|+|+..|+-++.-...+-+.|+.
T Consensus 7 ~~lIFtDlD~TLl~~~ye~~p------------------------A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v 62 (274)
T COG3769 7 PLLIFTDLDGTLLPHSYEWQP------------------------AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGV 62 (274)
T ss_pred ceEEEEcccCcccCCCCCCCc------------------------cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Confidence 468889999999984433211 123455555 6799999999888777777788888
Q ss_pred CCC
Q 012840 353 DGK 355 (455)
Q Consensus 353 ~~~ 355 (455)
++.
T Consensus 63 ~~~ 65 (274)
T COG3769 63 QGL 65 (274)
T ss_pred CCC
Confidence 753
No 167
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=69.19 E-value=2.7 Score=40.69 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=13.3
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
+.++||+||||+.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 479999999999974
No 168
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=68.79 E-value=2.4 Score=39.34 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=12.6
Q ss_pred EEEEeccccccccc
Q 012840 276 TLVLDLDETLVHST 289 (455)
Q Consensus 276 tLVLDLDeTLVhS~ 289 (455)
.++|||||||+.+.
T Consensus 2 ~viFDlDGTL~d~~ 15 (203)
T TIGR02252 2 LITFDAVGTLLALK 15 (203)
T ss_pred eEEEecCCceeeeC
Confidence 68999999999974
No 169
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=68.52 E-value=2.8 Score=40.91 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=13.7
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
+.++|||||||+.|.
T Consensus 23 k~viFDlDGTLiDs~ 37 (248)
T PLN02770 23 EAVLFDVDGTLCDSD 37 (248)
T ss_pred CEEEEcCCCccCcCH
Confidence 489999999999986
No 170
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=68.42 E-value=2.7 Score=41.28 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=13.9
Q ss_pred ceEEEEeccccccccc
Q 012840 274 SVTLVLDLDETLVHST 289 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~ 289 (455)
-+.++||+||||+.+.
T Consensus 4 ~k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 4 IQAVIFDWAGTTVDFG 19 (267)
T ss_pred eEEEEEcCCCCeecCC
Confidence 3589999999999984
No 171
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=67.94 E-value=3.2 Score=41.29 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=16.0
Q ss_pred CCCceEEEEeccccccccc
Q 012840 271 GRKSVTLVLDLDETLVHST 289 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~ 289 (455)
...-+.+||||||||++|.
T Consensus 21 ~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 21 GCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred cCCceEEEEeCCCceeCCc
Confidence 4556789999999999984
No 172
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=67.85 E-value=3 Score=40.38 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=13.3
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
+.++|||||||+.+.
T Consensus 11 k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 11 SALTFDLDDTLYDNR 25 (238)
T ss_pred eeEEEcCcccccCCh
Confidence 589999999999974
No 173
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=66.90 E-value=10 Score=43.17 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=44.7
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc--ccEEEEEcCCcHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLD 348 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk--~YEIvIfTas~~~YAd~ILd 348 (455)
..++..+++|+||||+-....+. ....-|.+.+.|+.|.+ ...++|.|.-.....+.++.
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~~~~------------------~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~ 550 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAPDPE------------------LAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFG 550 (726)
T ss_pred hccceEEEEecCccccCCCCCcc------------------cCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhC
Confidence 35667999999999996421110 01235788899999996 78899999998887777665
Q ss_pred HH
Q 012840 349 IL 350 (455)
Q Consensus 349 ~L 350 (455)
.+
T Consensus 551 ~~ 552 (726)
T PRK14501 551 DL 552 (726)
T ss_pred CC
Confidence 43
No 174
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=66.32 E-value=2.3 Score=39.70 Aligned_cols=13 Identities=54% Similarity=0.708 Sum_probs=11.9
Q ss_pred EEEeccccccccc
Q 012840 277 LVLDLDETLVHST 289 (455)
Q Consensus 277 LVLDLDeTLVhS~ 289 (455)
+||||||||+.+.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999986
No 175
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=66.29 E-value=2.8 Score=38.00 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=12.2
Q ss_pred EEEeccccccccc
Q 012840 277 LVLDLDETLVHST 289 (455)
Q Consensus 277 LVLDLDeTLVhS~ 289 (455)
++||+||||+.+.
T Consensus 2 iiFD~DGTL~ds~ 14 (185)
T TIGR01990 2 VIFDLDGVITDTA 14 (185)
T ss_pred eEEcCCCccccCh
Confidence 7999999999987
No 176
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=66.08 E-value=9.2 Score=37.64 Aligned_cols=54 Identities=24% Similarity=0.238 Sum_probs=33.9
Q ss_pred ceEEEEecccccc-cccccccCCCCceEEEEecceeeeEEEeeCchHHHHHH-HhhcccEEEEEcCCcHHHHHHHHHHHC
Q 012840 274 SVTLVLDLDETLV-HSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLE-RVAEMFEVVIFTASQSIYAAQLLDILD 351 (455)
Q Consensus 274 k~tLVLDLDeTLV-hS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe-~Lsk~YEIvIfTas~~~YAd~ILd~LD 351 (455)
++.|+.||||||+ ... .-+.-+.++|+ ......-+++-|.-+-.-+..++....
T Consensus 2 ~~ll~sDlD~Tl~~~~~------------------------~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~ 57 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDD------------------------EALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYN 57 (247)
T ss_dssp SEEEEEETBTTTBHCHH------------------------HHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT
T ss_pred CEEEEEECCCCCcCCCH------------------------HHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCC
Confidence 5789999999999 211 01334555566 233456677777777788888887643
No 177
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=65.95 E-value=14 Score=35.58 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=33.9
Q ss_pred EeeCchHHHHHH-Hhh-cccEEEEEcCCcHHHHHHHHHHH
Q 012840 313 VKQRPHLKTFLE-RVA-EMFEVVIFTASQSIYAAQLLDIL 350 (455)
Q Consensus 313 V~lRPgl~eFLe-~Ls-k~YEIvIfTas~~~YAd~ILd~L 350 (455)
+.++||+.+.|+ ++. +.+.++|-|++...|++++++..
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 367999999995 787 69999999999999999999774
No 178
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=65.44 E-value=8.6 Score=36.90 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=32.8
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHHCCC
Q 012840 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPD 353 (455)
Q Consensus 277 LVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~~~YAd~ILd~LDP~ 353 (455)
+++||||||++.... +.|.. +-|+...+.-.++|-|.-...-+..++..++..
T Consensus 2 i~~DlDgTLl~~~~~-----------------------~~~~~-~~~~~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 2 IITDLDNTLLGDDEG-----------------------LASFV-ELLRGSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred eEEeccccccCCHHH-----------------------HHHHH-HHHHhcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 688999999984311 11212 444433345667777777777777777776543
No 179
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=64.53 E-value=4 Score=38.69 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=14.1
Q ss_pred ceEEEEeccccccccc
Q 012840 274 SVTLVLDLDETLVHST 289 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~ 289 (455)
.+.++||+||||+++.
T Consensus 7 ~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 7 ILAAIFDMDGLLIDSE 22 (222)
T ss_pred CcEEEEcCCCCCCcCH
Confidence 4689999999999985
No 180
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=64.21 E-value=2.7 Score=39.10 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=11.7
Q ss_pred EEEeccccccccc
Q 012840 277 LVLDLDETLVHST 289 (455)
Q Consensus 277 LVLDLDeTLVhS~ 289 (455)
+|||+||||+.|.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999986
No 181
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=63.93 E-value=2.7 Score=41.80 Aligned_cols=87 Identities=13% Similarity=0.034 Sum_probs=65.7
Q ss_pred EEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEccccee---eCCceeecccccCCCCCc
Q 012840 311 VYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF---SDGTYTKDLTVLGVDLAK 386 (455)
Q Consensus 311 v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~---~~g~yiKDLs~Lgrdl~~ 386 (455)
.+....|-+ ++|+++. +.+.|+|.|....++= .++..++.. .+|++.+..-.-.. ....|.+-|..+|..++.
T Consensus 111 ~~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee 187 (237)
T KOG3085|consen 111 AWKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEE 187 (237)
T ss_pred CceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-HhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHH
Confidence 345555555 9999999 6789999999998887 777777776 58887776221112 135788889999999999
Q ss_pred EEEEECCchh-hccC
Q 012840 387 VAIIDNSPQV-FRLQ 400 (455)
Q Consensus 387 vVIIDDsp~~-~~~q 400 (455)
+|.|||.... +...
T Consensus 188 ~vhIgD~l~nD~~gA 202 (237)
T KOG3085|consen 188 CVHIGDLLENDYEGA 202 (237)
T ss_pred eEEecCccccccHhH
Confidence 9999999987 5433
No 182
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=62.97 E-value=4.4 Score=37.13 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.3
Q ss_pred ceEEEEeccccccccc
Q 012840 274 SVTLVLDLDETLVHST 289 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~ 289 (455)
.+++|||+||||+.+.
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 3479999999999853
No 183
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=62.84 E-value=3.8 Score=38.27 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=13.2
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
+.++||+||||+++.
T Consensus 2 k~viFD~DGTL~d~~ 16 (224)
T TIGR02254 2 KTLLFDLDDTILDFQ 16 (224)
T ss_pred CEEEEcCcCcccccc
Confidence 478999999999975
No 184
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=62.77 E-value=3.6 Score=37.14 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=11.9
Q ss_pred EEEeccccccccc
Q 012840 277 LVLDLDETLVHST 289 (455)
Q Consensus 277 LVLDLDeTLVhS~ 289 (455)
|+|||||||+.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 6899999999986
No 185
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=62.76 E-value=4 Score=40.98 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.2
Q ss_pred ceEEEEeccccccccc
Q 012840 274 SVTLVLDLDETLVHST 289 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~ 289 (455)
-..+||||||||+.+.
T Consensus 40 ~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 40 PEALLFDCDGVLVETE 55 (286)
T ss_pred CcEEEEeCceeEEccc
Confidence 4589999999999986
No 186
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=62.33 E-value=6 Score=43.38 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=61.5
Q ss_pred EEeeCchHHHHHHHhhc-cc-EEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEE
Q 012840 312 YVKQRPHLKTFLERVAE-MF-EVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 312 ~V~lRPgl~eFLe~Lsk-~Y-EIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVI 389 (455)
.-..|||+.+.|++|.+ .+ .++|-|...+.+|..+++.+...+ +|.... .....+-+..++...+.++.
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f~~~~--------p~~K~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VHAELL--------PEDKLEIVKELREKYGPVAM 430 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hhhccC--------cHHHHHHHHHHHhcCCEEEE
Confidence 46789999999999995 68 999999999999999999998764 442111 11112334455666688999
Q ss_pred EECCchhhccCCCceeee
Q 012840 390 IDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 390 IDDsp~~~~~qp~NgIpI 407 (455)
|-|...-...-...++.|
T Consensus 431 vGDg~nD~~al~~A~vgi 448 (536)
T TIGR01512 431 VGDGINDAPALAAADVGI 448 (536)
T ss_pred EeCCHHHHHHHHhCCEEE
Confidence 999986554333344433
No 187
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=62.27 E-value=4 Score=37.83 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=13.1
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
+.++||+||||+++.
T Consensus 2 k~viFD~dgTLiD~~ 16 (198)
T TIGR01428 2 KALVFDVYGTLFDVH 16 (198)
T ss_pred cEEEEeCCCcCccHH
Confidence 378999999999975
No 188
>PRK09449 dUMP phosphatase; Provisional
Probab=62.21 E-value=3.9 Score=38.60 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=12.3
Q ss_pred eEEEEecccccccc
Q 012840 275 VTLVLDLDETLVHS 288 (455)
Q Consensus 275 ~tLVLDLDeTLVhS 288 (455)
+.++|||||||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 48999999999974
No 189
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=62.18 E-value=4.4 Score=37.96 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=13.1
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
+.++|||||||+++.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 479999999999874
No 190
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=61.75 E-value=4 Score=38.21 Aligned_cols=15 Identities=47% Similarity=0.627 Sum_probs=13.2
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
..++||+||||+++.
T Consensus 7 ~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 7 RAVAFDLDGTLVDSA 21 (226)
T ss_pred cEEEEcCCcccccCH
Confidence 489999999999874
No 191
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=60.85 E-value=7.6 Score=42.69 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=60.1
Q ss_pred EEeeCchHHHHHHHhh-cc-cEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEE
Q 012840 312 YVKQRPHLKTFLERVA-EM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAI 389 (455)
Q Consensus 312 ~V~lRPgl~eFLe~Ls-k~-YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVI 389 (455)
....|||+.+.|++|. +. +.++|-|...+.+|..+++.++-+. +|... . .....+-+..++....++++
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f~~~-~-------p~~K~~~v~~l~~~~~~v~~ 452 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VHAEL-L-------PEDKLAIVKELQEEGGVVAM 452 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-eeccC-C-------HHHHHHHHHHHHHcCCEEEE
Confidence 3668999999999997 46 9999999999999999999998864 44321 1 00111223334445568999
Q ss_pred EECCchhhccCCCceeee
Q 012840 390 IDNSPQVFRLQVNNGIPI 407 (455)
Q Consensus 390 IDDsp~~~~~qp~NgIpI 407 (455)
|-|...-...-...++-|
T Consensus 453 vGDg~nD~~al~~A~vgi 470 (556)
T TIGR01525 453 VGDGINDAPALAAADVGI 470 (556)
T ss_pred EECChhHHHHHhhCCEeE
Confidence 999986554333334433
No 192
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=60.49 E-value=4.8 Score=37.98 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=13.7
Q ss_pred ceEEEEeccccccccc
Q 012840 274 SVTLVLDLDETLVHST 289 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~ 289 (455)
...++||+||||+.+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 3488999999999975
No 193
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=60.48 E-value=4.2 Score=35.55 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=11.7
Q ss_pred EEEeccccccccc
Q 012840 277 LVLDLDETLVHST 289 (455)
Q Consensus 277 LVLDLDeTLVhS~ 289 (455)
++||+||||+++.
T Consensus 1 iifD~dgtL~d~~ 13 (176)
T PF13419_consen 1 IIFDLDGTLVDTD 13 (176)
T ss_dssp EEEESBTTTEEHH
T ss_pred cEEECCCCcEeCH
Confidence 6899999999875
No 194
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=59.76 E-value=22 Score=33.37 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=41.0
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHH
Q 012840 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 350 (455)
Q Consensus 277 LVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~L 350 (455)
+|.|+||||--|-... ...+ ..... +.+||+.++...+. +.|.++=-|+-.-..|...-..|
T Consensus 2 VvsDIDGTiT~SD~~G-----~i~~----~~G~d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLG-----HILP----ILGKD---WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred EEEeccCCcCccchhh-----hhhh----ccCch---hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 6889999998773110 0000 01111 57999999999999 56988877887766666555544
No 195
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=58.04 E-value=11 Score=34.19 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=37.9
Q ss_pred eCchHH----HHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCC-CeeeeEE
Q 012840 315 QRPHLK----TFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG-KLISRRV 361 (455)
Q Consensus 315 lRPgl~----eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~-~lfs~rL 361 (455)
++|++. +||+++. +.++++|-|++...+++.+++.+.-.. ..+...+
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 457777 9999985 789999999999999999999887654 2344455
No 196
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=57.99 E-value=14 Score=37.62 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=50.8
Q ss_pred CceEEEEeccccccccccccc----CCCCceEEEEec-ceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHH
Q 012840 273 KSVTLVLDLDETLVHSTLEYC----DDADFTFTVFFN-MKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQL 346 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~~~~~----~~~df~~~i~~~-~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~I 346 (455)
++-.+|||+|||++....... ....|.- ..+. .-...--..-=|++.+|++++. ..+.|++.|.-....-+.-
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~-~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT 178 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDS-ELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVT 178 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCCh-hhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHH
Confidence 356999999999995431110 0111110 0000 0000001223589999999997 6799999999887666666
Q ss_pred HHHHCCCCCe-eeeEEEcc
Q 012840 347 LDILDPDGKL-ISRRVYRE 364 (455)
Q Consensus 347 Ld~LDP~~~l-fs~rL~Re 364 (455)
++.|...|-. ..+.+.|.
T Consensus 179 ~~NL~kaGy~~~~~LiLR~ 197 (275)
T TIGR01680 179 EANLKKAGYHTWEKLILKD 197 (275)
T ss_pred HHHHHHcCCCCcceeeecC
Confidence 6666555511 23444564
No 197
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=57.26 E-value=4.7 Score=36.19 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=11.9
Q ss_pred EEEeccccccccc
Q 012840 277 LVLDLDETLVHST 289 (455)
Q Consensus 277 LVLDLDeTLVhS~ 289 (455)
++|||||||+.+.
T Consensus 2 vlFDlDgtLv~~~ 14 (183)
T TIGR01509 2 ILFDLDGVLVDTS 14 (183)
T ss_pred eeeccCCceechH
Confidence 7899999999985
No 198
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=49.98 E-value=7.7 Score=41.20 Aligned_cols=18 Identities=0% Similarity=0.172 Sum_probs=15.4
Q ss_pred CCceEEEEeccccccccc
Q 012840 272 RKSVTLVLDLDETLVHST 289 (455)
Q Consensus 272 ~kk~tLVLDLDeTLVhS~ 289 (455)
.+-+.+|||||||||.+.
T Consensus 129 ~~~~~VIFDlDGTLIDS~ 146 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDN 146 (381)
T ss_pred CCCCEEEEcCcCcceeCH
Confidence 456789999999999875
No 199
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=49.93 E-value=6.5 Score=42.08 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=13.6
Q ss_pred eEEEEeccccccccc
Q 012840 275 VTLVLDLDETLVHST 289 (455)
Q Consensus 275 ~tLVLDLDeTLVhS~ 289 (455)
..++|||||||+++.
T Consensus 242 k~vIFDlDGTLiDs~ 256 (459)
T PRK06698 242 QALIFDMDGTLFQTD 256 (459)
T ss_pred hheeEccCCceecch
Confidence 579999999999986
No 200
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=49.04 E-value=26 Score=33.78 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=28.9
Q ss_pred EEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccE--EEEEcCCcHHHHH
Q 012840 278 VLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFE--VVIFTASQSIYAA 344 (455)
Q Consensus 278 VLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YE--IvIfTas~~~YAd 344 (455)
.||.||||.--...+. -...-|++.+.|+.|++... |+|-|.-...-.+
T Consensus 1 ~lDyDGTL~p~~~~p~------------------~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~ 51 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPD------------------AAVPPPELRELLRALAADPNNTVAIVSGRSLDDLE 51 (235)
T ss_dssp EEE-TTTSS---S-GG------------------G----HHHHHHHHHHHHHSE--EEEE-SS-HHHHH
T ss_pred CcccCCccCCCCCCcc------------------ccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhH
Confidence 5899999986432221 14567999999999998766 7777777766633
No 201
>PLN02382 probable sucrose-phosphatase
Probab=46.89 E-value=42 Score=35.86 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.2
Q ss_pred CCceEEEEecccccccc
Q 012840 272 RKSVTLVLDLDETLVHS 288 (455)
Q Consensus 272 ~kk~tLVLDLDeTLVhS 288 (455)
.+++.|+.||||||+..
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 34789999999999965
No 202
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=46.46 E-value=34 Score=40.10 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=41.1
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh--cccEEEEEcCCcHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA--EMFEVVIFTASQSIYAAQLLD 348 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls--k~YEIvIfTas~~~YAd~ILd 348 (455)
..++..|+||+||||+..... -+..-|++.+-|+.|. +...++|-|.-...-.+.++.
T Consensus 593 ~~~~rlI~LDyDGTLlp~~~~--------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~ 652 (854)
T PLN02205 593 RTTTRAILLDYDGTLMPQASI--------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFS 652 (854)
T ss_pred hhcCeEEEEecCCcccCCccc--------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhC
Confidence 345678999999999954210 0122468888899985 457788888877777666664
Q ss_pred HH
Q 012840 349 IL 350 (455)
Q Consensus 349 ~L 350 (455)
.+
T Consensus 653 ~~ 654 (854)
T PLN02205 653 PC 654 (854)
T ss_pred CC
Confidence 44
No 203
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=44.82 E-value=40 Score=39.14 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=44.8
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc--ccEEEEEcCCcHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLD 348 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk--~YEIvIfTas~~~YAd~ILd 348 (455)
..++..|+||.||||+.....+. ...-+..-|++.+-|+.|++ .-.|+|-|.-...-.+.++.
T Consensus 504 ~a~~rll~LDyDGTL~~~~~~~~---------------~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~ 568 (797)
T PLN03063 504 KSNNRLLILGFYGTLTEPRNSQI---------------KEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFG 568 (797)
T ss_pred hccCeEEEEecCccccCCCCCcc---------------ccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhC
Confidence 34567899999999995322110 01123456899999999985 47888999888877777765
Q ss_pred H
Q 012840 349 I 349 (455)
Q Consensus 349 ~ 349 (455)
.
T Consensus 569 ~ 569 (797)
T PLN03063 569 E 569 (797)
T ss_pred C
Confidence 3
No 204
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=44.69 E-value=12 Score=35.62 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.6
Q ss_pred ceEEEEeccccccccc
Q 012840 274 SVTLVLDLDETLVHST 289 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~ 289 (455)
+.++++|+||||+.+.
T Consensus 3 ~~~vifDfDgTi~~~d 18 (219)
T PRK09552 3 SIQIFCDFDGTITNND 18 (219)
T ss_pred CcEEEEcCCCCCCcch
Confidence 4589999999999764
No 205
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=44.04 E-value=27 Score=35.11 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=55.4
Q ss_pred EEeeCchHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHHC---CCCCeeeeEEEcccc-e---eeC---Cceeeccccc
Q 012840 312 YVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILD---PDGKLISRRVYRESC-I---FSD---GTYTKDLTVL 380 (455)
Q Consensus 312 ~V~lRPgl~eFLe~Lsk~-YEIvIfTas~~~YAd~ILd~LD---P~~~lfs~rL~Re~C-~---~~~---g~yiKDLs~L 380 (455)
.+.+|.|+.+|++.|.++ --+.|||||.-.-.+.+|+.-. |.=+.++..+.-+.. . +.+ ..|.|+-..+
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l 167 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESAL 167 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccc
Confidence 488999999999999965 8999999999999999999863 222445555543221 1 111 1233443333
Q ss_pred --------CCCCCcEEEEECCchhhcc-----CCCceeeec
Q 012840 381 --------GVDLAKVAIIDNSPQVFRL-----QVNNGIPIE 408 (455)
Q Consensus 381 --------grdl~~vVIIDDsp~~~~~-----qp~NgIpI~ 408 (455)
-....+||++=|+..-..+ ..+|.|.|-
T Consensus 168 ~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIG 208 (246)
T PF05822_consen 168 EDSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIG 208 (246)
T ss_dssp TTHHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEE
T ss_pred cCchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEE
Confidence 1355789999999975532 335555553
No 206
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=43.86 E-value=62 Score=30.11 Aligned_cols=66 Identities=26% Similarity=0.329 Sum_probs=36.3
Q ss_pred eCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECC
Q 012840 315 QRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNS 393 (455)
Q Consensus 315 lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDDs 393 (455)
.|-.+.+||+.+. +.-.|++|-|+.+.- .+|..++....++ ..++|++
T Consensus 53 ~~~~l~~~L~~~~~~gk~I~~yGA~~kg~--tlln~~g~~~~~I-----------------------------~~vvD~n 101 (160)
T PF08484_consen 53 SKAELREFLEKLKAEGKRIAGYGAGAKGN--TLLNYFGLDNDLI-----------------------------DYVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE---SHHH--HHHHHHT--TTTS-------------------------------EEES-
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcchHHH--HHHHHhCCCccee-----------------------------EEEEeCC
Confidence 4556778888887 567799999998744 5677777655444 2477777
Q ss_pred chhh-ccCCCceeeecccc
Q 012840 394 PQVF-RLQVNNGIPIESWF 411 (455)
Q Consensus 394 p~~~-~~qp~NgIpI~~f~ 411 (455)
|... .+-|..+|||.+..
T Consensus 102 p~K~G~~~PGt~ipI~~p~ 120 (160)
T PF08484_consen 102 PLKQGKYLPGTHIPIVSPE 120 (160)
T ss_dssp GGGTTEE-TTT--EEEEGG
T ss_pred hhhcCcccCCCCCeECCHH
Confidence 7766 34566777777664
No 207
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=42.91 E-value=15 Score=34.37 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.7
Q ss_pred ceEEEEeccccccccc
Q 012840 274 SVTLVLDLDETLVHST 289 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~ 289 (455)
.+.++||+||||++..
T Consensus 4 ~k~i~FD~d~TL~d~~ 19 (229)
T COG1011 4 IKAILFDLDGTLLDFD 19 (229)
T ss_pred eeEEEEecCCcccccc
Confidence 4589999999999974
No 208
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=42.68 E-value=13 Score=35.60 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.5
Q ss_pred ceEEEEeccccccccc
Q 012840 274 SVTLVLDLDETLVHST 289 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~ 289 (455)
++..+||+||||++.-
T Consensus 5 ~~la~FDfDgTLt~~d 20 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQD 20 (210)
T ss_pred CcEEEEcCCCCCccCc
Confidence 4578999999999974
No 209
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=42.20 E-value=14 Score=34.44 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=12.4
Q ss_pred EEEEeccccccccc
Q 012840 276 TLVLDLDETLVHST 289 (455)
Q Consensus 276 tLVLDLDeTLVhS~ 289 (455)
++||||||||++..
T Consensus 2 ~viFDldgvL~d~~ 15 (199)
T PRK09456 2 LYIFDLGNVIVDID 15 (199)
T ss_pred EEEEeCCCccccCc
Confidence 68999999999874
No 210
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=37.15 E-value=63 Score=38.35 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=47.6
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc--ccEEEEEcCCcHHHHHHHHH
Q 012840 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLD 348 (455)
Q Consensus 271 ~~kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk--~YEIvIfTas~~~YAd~ILd 348 (455)
..++..|+||.||||+--...+....... ....+..-|.+.+.|+.|++ ...|+|-|--...-.+.++.
T Consensus 588 ~a~~RLlfLDyDGTLap~~~~P~~~~~~~---------~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg 658 (934)
T PLN03064 588 QSNNRLLILGFNATLTEPVDTPGRRGDQI---------KEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFG 658 (934)
T ss_pred hccceEEEEecCceeccCCCCcccccccc---------cccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhC
Confidence 34567899999999986532221000000 01123455889999999995 47899999998888887775
Q ss_pred HH
Q 012840 349 IL 350 (455)
Q Consensus 349 ~L 350 (455)
.+
T Consensus 659 ~~ 660 (934)
T PLN03064 659 EF 660 (934)
T ss_pred CC
Confidence 54
No 211
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=36.70 E-value=2e+02 Score=26.57 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=63.5
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCC-cHHHHHHHHHHHC
Q 012840 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS-QSIYAAQLLDILD 351 (455)
Q Consensus 274 k~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Ls-k~YEIvIfTas-~~~YAd~ILd~LD 351 (455)
+...++|||-||.-.-..-..++-|. |.+-.-+..+.-...=|-...-|..|+ +.-++++.+-+ ...||.+.|+.+.
T Consensus 5 p~~~~fdldytiwP~~vdthl~~pfk-P~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fk 83 (144)
T KOG4549|consen 5 PEAMQFDLDYTIWPRLVDTHLDYPFK-PFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFK 83 (144)
T ss_pred CceeEEeccceeeeEEEEeccccccc-ccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhc
Confidence 44667777777754321111111110 111111222333445577788899999 56899988877 5799999999986
Q ss_pred CCCCeeeeEEEcccce---eeCCce---eeccccc-CCCCCcEEEEECCch
Q 012840 352 PDGKLISRRVYRESCI---FSDGTY---TKDLTVL-GVDLAKVAIIDNSPQ 395 (455)
Q Consensus 352 P~~~lfs~rL~Re~C~---~~~g~y---iKDLs~L-grdl~~vVIIDDsp~ 395 (455)
.... +..+-..+.-. ..+|.. .|++..- +...++.++.||...
T Consensus 84 vk~~-Gvlkps~e~ft~~~~g~gsklghfke~~n~s~~~~k~~~~fdDesr 133 (144)
T KOG4549|consen 84 VKQT-GVLKPSLEEFTFEAVGDGSKLGHFKEFTNNSNSIEKNKQVFDDESR 133 (144)
T ss_pred cCcc-cccchhhhcCceeeecCcccchhHHHHhhccCcchhceeeeccccc
Confidence 5421 11111111111 112321 2444322 566778888888654
No 212
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=33.67 E-value=61 Score=34.82 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=36.5
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCc
Q 012840 273 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQ 339 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~~~~~~~~df~~~i~~~~~~~~v~V~lRPgl~eFLe~Lsk~YEIvIfTas~ 339 (455)
..+..-||+|+|||...... .+......|.+..++....+=+.=.+.|-++|||...
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~----------vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGK----------VFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CcceEEEecCCceeecCCcc----------eeeccCccceeeccccchhhhhhccCCeEEEEEeccc
Confidence 45578899999999875321 1222334455555666655443334789999999765
No 213
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=32.44 E-value=21 Score=31.97 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=11.0
Q ss_pred EEEeccccccccc
Q 012840 277 LVLDLDETLVHST 289 (455)
Q Consensus 277 LVLDLDeTLVhS~ 289 (455)
+|+|+||||+...
T Consensus 2 ~~fD~DgTl~~~~ 14 (177)
T TIGR01488 2 AIFDFDGTLTRQD 14 (177)
T ss_pred EEecCccccccch
Confidence 6899999999753
No 214
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=31.82 E-value=92 Score=28.55 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=46.6
Q ss_pred EEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCcH-HHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccc
Q 012840 302 VFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQS-IYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTV 379 (455)
Q Consensus 302 i~~~~~~~~v~V~lRPgl~eFLe~Lsk-~YEIvIfTas~~-~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~ 379 (455)
+.+.+.+ ..++.+.++++.+.+ .+.+.|+|.... +--+.++..+|- ...|.|+.++..
T Consensus 65 Vt~SGGE-----l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD~---------------l~~g~y~~~~~~ 124 (147)
T TIGR02826 65 VLFLGGE-----WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLDY---------------LKTGRWIHTRGG 124 (147)
T ss_pred EEEechh-----cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCCE---------------EEEChHHHHcCC
Confidence 4555655 367899999999985 589999998654 223344544442 235666666665
Q ss_pred cCCCCCcEEEEECC
Q 012840 380 LGVDLAKVAIIDNS 393 (455)
Q Consensus 380 Lgrdl~~vVIIDDs 393 (455)
+++.-+|=.|+|-.
T Consensus 125 ~~~~~sNQ~~~~~~ 138 (147)
T TIGR02826 125 LGSPTTNQIFIDLR 138 (147)
T ss_pred CCCCCcCceEEECC
Confidence 55545577777743
No 215
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=31.69 E-value=26 Score=31.69 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=11.3
Q ss_pred EEEeccccccccc
Q 012840 277 LVLDLDETLVHST 289 (455)
Q Consensus 277 LVLDLDeTLVhS~ 289 (455)
+++|+||||+...
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 5899999999875
No 216
>PRK10671 copA copper exporting ATPase; Provisional
Probab=30.95 E-value=40 Score=39.10 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=59.2
Q ss_pred eeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEEC
Q 012840 314 KQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDN 392 (455)
Q Consensus 314 ~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~ILd~LDP~~~lfs~rL~Re~C~~~~g~yiKDLs~Lgrdl~~vVIIDD 392 (455)
.+||++.+.|+++. +.+.+++.|...+..|+.+++.++-.. +|.... +....+-++.++....++++|-|
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~-~~~~~~--------p~~K~~~i~~l~~~~~~v~~vGD 720 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDE-VIAGVL--------PDGKAEAIKRLQSQGRQVAMVGD 720 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCE-EEeCCC--------HHHHHHHHHHHhhcCCEEEEEeC
Confidence 56999999999998 569999999999999999999998764 332211 11112233445556678999999
Q ss_pred CchhhccCCCceeee
Q 012840 393 SPQVFRLQVNNGIPI 407 (455)
Q Consensus 393 sp~~~~~qp~NgIpI 407 (455)
...-...-...++-|
T Consensus 721 g~nD~~al~~Agvgi 735 (834)
T PRK10671 721 GINDAPALAQADVGI 735 (834)
T ss_pred CHHHHHHHHhCCeeE
Confidence 987554433344433
No 217
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=29.59 E-value=26 Score=32.29 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=11.1
Q ss_pred EEEeccccccccc
Q 012840 277 LVLDLDETLVHST 289 (455)
Q Consensus 277 LVLDLDeTLVhS~ 289 (455)
.++|+||||+...
T Consensus 2 a~FD~DgTL~~~~ 14 (202)
T TIGR01490 2 AFFDFDGTLTAKD 14 (202)
T ss_pred eEEccCCCCCCCc
Confidence 5899999999853
No 218
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=29.11 E-value=44 Score=36.74 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.2
Q ss_pred EEEEEcCCcHHHHHHHHHH-HCCC
Q 012840 331 EVVIFTASQSIYAAQLLDI-LDPD 353 (455)
Q Consensus 331 EIvIfTas~~~YAd~ILd~-LDP~ 353 (455)
+.+|-||+.+.|++++++. |+-+
T Consensus 124 ~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 124 KRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred CEEEEECCcHHHHHHHHHHcCCCC
Confidence 4599999999999999975 6554
No 219
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=29.01 E-value=1.1e+02 Score=33.35 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=40.1
Q ss_pred EEEeeCchHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHH-CC-------CCCeeeeEEE
Q 012840 311 VYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDIL-DP-------DGKLISRRVY 362 (455)
Q Consensus 311 v~V~lRPgl~eFLe~Lsk~-YEIvIfTas~~~YAd~ILd~L-DP-------~~~lfs~rL~ 362 (455)
-||.+-|.+..+|+.|.+. -.+.+-|.|.-.|++.+++.+ ++ ++.||+-++.
T Consensus 180 kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv 240 (448)
T PF05761_consen 180 KYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIV 240 (448)
T ss_dssp CCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEE
T ss_pred HHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEE
Confidence 4678899999999999965 489999999999999999986 44 6778877766
No 220
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=26.66 E-value=95 Score=26.23 Aligned_cols=15 Identities=53% Similarity=0.574 Sum_probs=13.4
Q ss_pred ceEEEEecccccccc
Q 012840 274 SVTLVLDLDETLVHS 288 (455)
Q Consensus 274 k~tLVLDLDeTLVhS 288 (455)
..+|||+=|||.|.+
T Consensus 39 ~~~lvLeeDGT~Vd~ 53 (81)
T cd06537 39 VLTLVLEEDGTAVDS 53 (81)
T ss_pred ceEEEEecCCCEEcc
Confidence 379999999999976
No 221
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=25.42 E-value=1e+02 Score=25.83 Aligned_cols=15 Identities=53% Similarity=0.636 Sum_probs=13.4
Q ss_pred ceEEEEecccccccc
Q 012840 274 SVTLVLDLDETLVHS 288 (455)
Q Consensus 274 k~tLVLDLDeTLVhS 288 (455)
..+|||+=|||.|.+
T Consensus 40 ~~~lvL~eDGT~Vd~ 54 (78)
T cd06539 40 LVTLVLEEDGTVVDT 54 (78)
T ss_pred CcEEEEeCCCCEEcc
Confidence 469999999999976
No 222
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=24.76 E-value=41 Score=40.28 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.5
Q ss_pred CceEEEEeccccccccc
Q 012840 273 KSVTLVLDLDETLVHST 289 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS~ 289 (455)
+-+.++|||||||+++.
T Consensus 74 ~ikaVIFDlDGTLiDS~ 90 (1057)
T PLN02919 74 KVSAVLFDMDGVLCNSE 90 (1057)
T ss_pred CCCEEEECCCCCeEeCh
Confidence 34579999999999986
No 223
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=23.88 E-value=1.1e+02 Score=25.68 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=13.9
Q ss_pred CceEEEEecccccccc
Q 012840 273 KSVTLVLDLDETLVHS 288 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS 288 (455)
...+|||+=|||.|.+
T Consensus 41 ~~~~lvL~eDGT~Vdd 56 (80)
T cd06536 41 APITLVLAEDGTIVED 56 (80)
T ss_pred CceEEEEecCCcEEcc
Confidence 4579999999999976
No 224
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=23.19 E-value=73 Score=33.33 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=31.2
Q ss_pred EEEeeCc-hHHHHHHHhhc------ccEEEEEcCCcHHHHHHHHHHH
Q 012840 311 VYVKQRP-HLKTFLERVAE------MFEVVIFTASQSIYAAQLLDIL 350 (455)
Q Consensus 311 v~V~lRP-gl~eFLe~Lsk------~YEIvIfTas~~~YAd~ILd~L 350 (455)
+.++.|| ++..-|+.|.+ .++|+|+--|...-+..++...
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~ 52 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSF 52 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhh
Confidence 4678899 79999999984 4899999988876555555444
No 225
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=23.09 E-value=61 Score=31.70 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=59.3
Q ss_pred eeCchHHHHHHHhh-cccEEEEEcCCcHHHHHHHH----HHHCCCCCeeeeEEEccccee-eCCceeecccccCCCCCcE
Q 012840 314 KQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLL----DILDPDGKLISRRVYRESCIF-SDGTYTKDLTVLGVDLAKV 387 (455)
Q Consensus 314 ~lRPgl~eFLe~Ls-k~YEIvIfTas~~~YAd~IL----d~LDP~~~lfs~rL~Re~C~~-~~g~yiKDLs~Lgrdl~~v 387 (455)
.+=|.+-++|++-. ....++||++|+-. |.+++ +..|.. .||+..+--..-.. ..+.|.|.+..+|..+..+
T Consensus 103 hlypDav~~ik~wk~~g~~vyiYSSGSV~-AQkL~Fghs~agdL~-~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~ei 180 (229)
T COG4229 103 HLYPDAVQAIKRWKALGMRVYIYSSGSVK-AQKLFFGHSDAGDLN-SLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEI 180 (229)
T ss_pred ccCHhHHHHHHHHHHcCCcEEEEcCCCch-hHHHhhcccccccHH-hhhcceeeccccccccchhHHHHHHhcCCCchhe
Confidence 34588999998887 56899999999743 33332 223333 35655443211111 1357889999999999999
Q ss_pred EEEECCchhhccCCCcee
Q 012840 388 AIIDNSPQVFRLQVNNGI 405 (455)
Q Consensus 388 VIIDDsp~~~~~qp~NgI 405 (455)
+++-|.+.-.....+-|+
T Consensus 181 lFLSDn~~EL~AA~~vGl 198 (229)
T COG4229 181 LFLSDNPEELKAAAGVGL 198 (229)
T ss_pred EEecCCHHHHHHHHhcch
Confidence 999999986644444443
No 226
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=22.94 E-value=1.1e+02 Score=25.40 Aligned_cols=15 Identities=53% Similarity=0.691 Sum_probs=13.4
Q ss_pred ceEEEEecccccccc
Q 012840 274 SVTLVLDLDETLVHS 288 (455)
Q Consensus 274 k~tLVLDLDeTLVhS 288 (455)
..+|||+=|||.|.+
T Consensus 38 ~~~l~L~eDGT~Vdd 52 (74)
T smart00266 38 PVTLVLEEDGTIVDD 52 (74)
T ss_pred CcEEEEecCCcEEcc
Confidence 569999999999976
No 227
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=22.60 E-value=1.1e+02 Score=25.71 Aligned_cols=15 Identities=47% Similarity=0.430 Sum_probs=13.2
Q ss_pred ceEEEEecccccccc
Q 012840 274 SVTLVLDLDETLVHS 288 (455)
Q Consensus 274 k~tLVLDLDeTLVhS 288 (455)
..+|||+-|||.|.+
T Consensus 39 ~~~lvL~eDGT~Vd~ 53 (79)
T cd06538 39 ISSLVLDEDGTGVDT 53 (79)
T ss_pred ccEEEEecCCcEEcc
Confidence 369999999999976
No 228
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=22.55 E-value=1.2e+02 Score=25.36 Aligned_cols=16 Identities=50% Similarity=0.524 Sum_probs=13.8
Q ss_pred CceEEEEecccccccc
Q 012840 273 KSVTLVLDLDETLVHS 288 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS 288 (455)
...+|||+-|||.|..
T Consensus 39 ~~~~lvL~eDGTeVdd 54 (78)
T cd01615 39 APVTLVLEEDGTEVDD 54 (78)
T ss_pred CCeEEEEeCCCcEEcc
Confidence 4569999999999976
No 229
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=21.18 E-value=56 Score=29.82 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=12.1
Q ss_pred EEEEeccccccccc
Q 012840 276 TLVLDLDETLVHST 289 (455)
Q Consensus 276 tLVLDLDeTLVhS~ 289 (455)
+++||.||||....
T Consensus 3 ~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 3 AICFDKTGTLTQGK 16 (215)
T ss_dssp EEEEECCTTTBESH
T ss_pred EEEEecCCCcccCe
Confidence 78999999997764
No 230
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=20.76 E-value=60 Score=27.12 Aligned_cols=16 Identities=44% Similarity=0.501 Sum_probs=13.7
Q ss_pred CceEEEEecccccccc
Q 012840 273 KSVTLVLDLDETLVHS 288 (455)
Q Consensus 273 kk~tLVLDLDeTLVhS 288 (455)
...+|||+-|||.|..
T Consensus 39 ~~~~lvL~eDGT~Vdd 54 (78)
T PF02017_consen 39 EPVRLVLEEDGTEVDD 54 (78)
T ss_dssp STCEEEETTTTCBESS
T ss_pred cCcEEEEeCCCcEEcc
Confidence 3568999999999985
Done!