Query 012841
Match_columns 455
No_of_seqs 238 out of 1367
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05489 xylanase_inhibitor_I_l 100.0 1.3E-42 2.8E-47 355.0 30.0 291 1-294 29-361 (362)
2 cd05472 cnd41_like Chloroplast 100.0 2E-40 4.2E-45 330.4 30.1 270 3-296 23-299 (299)
3 PLN03146 aspartyl protease fam 100.0 5.8E-40 1.2E-44 342.6 31.8 282 1-298 131-430 (431)
4 KOG1339 Aspartyl protease [Pos 100.0 9.3E-40 2E-44 338.3 29.0 286 1-297 94-397 (398)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.8E-39 3.9E-44 327.6 24.6 252 1-297 50-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 3.7E-39 8E-44 324.0 24.4 243 21-293 64-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 6E-39 1.3E-43 323.5 25.4 247 21-293 62-325 (325)
8 PTZ00165 aspartyl protease; Pr 100.0 1.4E-38 3E-43 334.9 27.7 246 24-301 182-453 (482)
9 cd05486 Cathespin_E Cathepsin 100.0 1.3E-38 2.9E-43 319.8 24.9 247 20-293 53-316 (316)
10 cd05476 pepsin_A_like_plant Ch 100.0 2.8E-38 6.1E-43 309.8 25.3 224 23-296 31-265 (265)
11 cd05487 renin_like Renin stimu 100.0 2.4E-38 5.3E-43 319.3 25.1 246 21-294 64-326 (326)
12 cd05477 gastricsin Gastricsins 100.0 3.9E-38 8.4E-43 316.6 25.5 245 21-294 57-318 (318)
13 cd05488 Proteinase_A_fungi Fun 100.0 8.8E-38 1.9E-42 314.5 24.9 242 21-293 64-320 (320)
14 cd05475 nucellin_like Nucellin 100.0 3.1E-37 6.7E-42 303.9 27.6 236 3-296 24-273 (273)
15 cd05485 Cathepsin_D_like Cathe 100.0 1.6E-37 3.5E-42 313.8 24.7 246 21-293 67-329 (329)
16 cd06098 phytepsin Phytepsin, a 100.0 2.8E-37 6E-42 310.5 25.4 236 21-293 65-317 (317)
17 cd05474 SAP_like SAPs, pepsin- 100.0 3E-37 6.5E-42 306.2 24.0 243 24-294 31-295 (295)
18 cd05473 beta_secretase_like Be 100.0 3.3E-36 7.2E-41 308.3 28.6 272 20-299 52-350 (364)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 3E-36 6.5E-41 314.5 25.9 245 20-295 191-449 (450)
20 PTZ00147 plasmepsin-1; Provisi 100.0 3.3E-36 7.1E-41 314.7 25.9 244 21-295 193-450 (453)
21 PF00026 Asp: Eukaryotic aspar 100.0 2.6E-35 5.6E-40 294.2 17.9 247 21-294 56-317 (317)
22 cd06097 Aspergillopepsin_like 100.0 1.4E-33 3E-38 278.5 20.8 212 21-293 55-278 (278)
23 cd05471 pepsin_like Pepsin-lik 100.0 2.2E-31 4.8E-36 261.2 23.5 217 20-293 55-283 (283)
24 PF14541 TAXi_C: Xylanase inhi 99.9 5.8E-24 1.3E-28 193.5 14.4 154 138-293 1-161 (161)
25 PF14543 TAXi_N: Xylanase inhi 99.7 3.4E-17 7.4E-22 149.5 10.1 115 1-119 38-164 (164)
26 cd05470 pepsin_retropepsin_lik 98.4 9.8E-07 2.1E-11 74.3 8.1 57 20-80 52-109 (109)
27 cd05479 RP_DDI RP_DDI; retrope 94.5 0.15 3.3E-06 44.2 7.4 27 265-291 98-124 (124)
28 TIGR02281 clan_AA_DTGA clan AA 93.0 0.86 1.9E-05 39.3 9.3 37 135-185 8-44 (121)
29 TIGR03698 clan_AA_DTGF clan AA 90.8 0.52 1.1E-05 39.8 5.3 25 265-289 83-107 (107)
30 PF08284 RVP_2: Retroviral asp 86.4 3.5 7.6E-05 36.3 7.7 29 265-293 103-131 (135)
31 PF11925 DUF3443: Protein of u 84.6 25 0.00053 36.2 13.6 55 28-83 83-149 (370)
32 PF13650 Asp_protease_2: Aspar 82.2 1.8 3.9E-05 34.2 3.7 30 146-186 3-32 (90)
33 cd05484 retropepsin_like_LTR_2 79.0 3.1 6.7E-05 33.6 4.1 31 145-186 4-34 (91)
34 PF13975 gag-asp_proteas: gag- 78.7 3.1 6.6E-05 32.3 3.8 29 146-185 13-41 (72)
35 PF12384 Peptidase_A2B: Ty3 tr 76.0 12 0.00027 34.0 7.3 22 165-186 47-68 (177)
36 cd05483 retropepsin_like_bacte 73.4 5.3 0.00012 31.7 4.1 31 145-186 6-36 (96)
37 PF02817 E3_binding: e3 bindin 72.4 2.3 5E-05 29.2 1.4 23 362-384 2-24 (39)
38 cd06095 RP_RTVL_H_like Retrope 69.2 6.4 0.00014 31.5 3.7 29 146-185 3-31 (86)
39 cd06094 RP_Saci_like RP_Saci_l 68.8 15 0.00032 30.0 5.6 20 163-182 9-28 (89)
40 cd05483 retropepsin_like_bacte 67.5 10 0.00022 30.1 4.5 53 22-82 42-94 (96)
41 KOG0012 DNA damage inducible p 65.5 36 0.00079 34.8 8.7 39 258-296 310-348 (380)
42 cd05481 retropepsin_like_LTR_1 64.8 40 0.00086 27.5 7.6 22 165-186 12-33 (93)
43 COG3577 Predicted aspartyl pro 62.6 15 0.00032 34.7 5.1 37 135-185 102-138 (215)
44 PF02160 Peptidase_A3: Caulifl 61.3 22 0.00048 33.5 6.0 95 165-293 22-117 (201)
45 PF00077 RVP: Retroviral aspar 57.6 10 0.00022 30.8 2.9 26 145-181 9-34 (100)
46 COG0245 IspF 2C-methyl-D-eryth 48.4 38 0.00083 30.6 5.1 49 341-391 87-135 (159)
47 COG5550 Predicted aspartyl pro 46.4 15 0.00032 31.9 2.1 22 165-186 28-50 (125)
48 PF09668 Asp_protease: Asparty 46.1 24 0.00053 30.6 3.5 29 146-185 29-57 (124)
49 PF02542 YgbB: YgbB family; I 37.3 53 0.0012 29.8 4.3 48 342-391 88-135 (157)
50 PF13650 Asp_protease_2: Aspar 35.9 2E+02 0.0043 22.0 7.5 50 23-81 40-89 (90)
51 PF02594 DUF167: Uncharacteris 31.3 31 0.00068 27.3 1.7 21 366-386 43-63 (77)
52 PF11065 DUF2866: Protein of u 29.8 47 0.001 25.4 2.3 22 431-452 15-38 (65)
53 PF11615 DUF3249: Protein of u 25.2 39 0.00085 24.2 1.1 25 408-432 13-37 (60)
54 TIGR02281 clan_AA_DTGA clan AA 22.5 1.8E+02 0.0038 24.9 4.9 48 25-81 55-102 (121)
55 PRK01530 hypothetical protein; 21.1 69 0.0015 27.0 2.0 39 366-408 56-94 (105)
No 1
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.3e-42 Score=355.01 Aligned_cols=291 Identities=24% Similarity=0.416 Sum_probs=225.7
Q ss_pred CCCccccccCCCC-CC------CC----------CCCCCceEEEE-eCCCceEEEEEEEEEEEeCCCC--c---ccccce
Q 012841 1 MSNTYQALKCNPD-CN------CD----------NDRKECIYERR-YAEMSTSSGVLGVDVISFGNES--E---LVPQRA 57 (455)
Q Consensus 1 ~SsT~~~v~C~~~-C~------C~----------~~~~~C~y~i~-Y~dGs~~sG~~~~D~v~ig~~~--~---~~~~~~ 57 (455)
+||||+.++|++. |+ |. -.++.|.|... |++|+.++|.+++|+|+|+... . .+++++
T Consensus 29 ~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~ 108 (362)
T cd05489 29 HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNF 108 (362)
T ss_pred CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCE
Confidence 5899999999963 63 21 12356999765 7789889999999999997421 1 257899
Q ss_pred EEEEEEeccCCCCCCCCceEEeeCCCCCChHHHHHhcCCCCCceEEeecCCCCCCceEEECCCCCCCC-------ceeee
Q 012841 58 VFGCENLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPPD-------MVFSH 130 (455)
Q Consensus 58 ~fG~~~~~s~~~~~~~~dGILGLG~~~~S~~~qL~~~g~I~~~FSl~L~~~~~~~G~I~fGg~d~s~~-------~~~~~ 130 (455)
.|||+..+........+|||||||++.+|++.||..++.++++||+||.++...+|.|+||+.+..+. ..+.|
T Consensus 109 ~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~ 188 (362)
T cd05489 109 VFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSY 188 (362)
T ss_pred EEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccc
Confidence 99999876432223358999999999999999999887767899999987545689999999986431 23444
Q ss_pred cCCCC----CCceEEEeeeeEEcCEEeeeCCccc----cCCCcEEEccccceeeecHHHHHHHHHHHHHhccccccccCC
Q 012841 131 SDPFR----SPYYNIELKELRVAGKPLKVSPRIF----DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGP 202 (455)
Q Consensus 131 ~~~~~----~~~w~V~l~~I~Vgg~~l~l~~~~f----~~~~~aiiDSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~ 202 (455)
.+... ..+|.|+|++|.||++.+.+++..+ .+..+++|||||++++||+++|++|.++|.+++.........
T Consensus 189 tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~ 268 (362)
T cd05489 189 TPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAA 268 (362)
T ss_pred cccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCC
Confidence 43332 3699999999999999998765433 234689999999999999999999999999887643322211
Q ss_pred CCCcccccccCCcCCcccccCCCCeEEEEEcC-CeEEEeCCCCceEEecccCCeEEEEEEEcC---CCCeeecceeeeeE
Q 012841 203 DPNYDDICFSGAGRDVSELSKTFPQVDMVFGN-GQKLTLSPENYLFRHMKVSGAYCLGIFQNS---DSTTLLGGIVVRNT 278 (455)
Q Consensus 203 ~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~-g~~i~l~p~~Yi~~~~~~~~~~Cl~~~~~~---~~~~ILG~~Flr~~ 278 (455)
....+.||+.....+......+|+|+|+|++ |.++.|+|++|+++... +..|+++.... .+.||||+.|||++
T Consensus 269 -~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~~~--~~~Cl~f~~~~~~~~~~~IlG~~~~~~~ 345 (362)
T cd05489 269 -AVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVKG--GVACLAFVDGGSEPRPAVVIGGHQMEDN 345 (362)
T ss_pred -CCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCceEEEcCC--CcEEEEEeeCCCCCCceEEEeeheecce
Confidence 1224799986544443334689999999966 79999999999998753 67899887655 35799999999999
Q ss_pred EEEEECCCCEEEEeec
Q 012841 279 LVTYDRGNDKVGFWKT 294 (455)
Q Consensus 279 yvVFD~en~rIGFa~s 294 (455)
|++||++++|||||++
T Consensus 346 ~vvyD~~~~riGfa~~ 361 (362)
T cd05489 346 LLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEEECCCCEeecccC
Confidence 9999999999999975
No 2
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2e-40 Score=330.42 Aligned_cols=270 Identities=27% Similarity=0.515 Sum_probs=211.2
Q ss_pred CccccccCCCCCCCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCCCCCCceEEeeCC
Q 012841 3 NTYQALKCNPDCNCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGR 82 (455)
Q Consensus 3 sT~~~v~C~~~C~C~~~~~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~~~~~dGILGLG~ 82 (455)
|+--++.|. +| |.|.++|++|+.++|.+++|+|+|++. .+++++.|||+..+++.+. ..|||||||+
T Consensus 23 Ss~~Wv~c~---~c------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~--~~~~~~~Fg~~~~~~~~~~--~~~GilGLg~ 89 (299)
T cd05472 23 SDLTWVQCQ---PC------CLYQVSYGDGSYTTGDLATDTLTLGSS--DVVPGFAFGCGHDNEGLFG--GAAGLLGLGR 89 (299)
T ss_pred CCcccccCC---CC------CeeeeEeCCCceEEEEEEEEEEEeCCC--CccCCEEEECCccCCCccC--CCCEEEECCC
Confidence 344566675 34 999999999998899999999999984 1678899999988776432 6899999999
Q ss_pred CCCChHHHHHhcCCCCCceEEeecCCC-CCCceEEECCCCCCCCceeeecCCCC----CCceEEEeeeeEEcCEEeeeCC
Q 012841 83 GRLSVVDQLVEKGVISDSFSLCYGGMD-VGGGAMVLGGITPPPDMVFSHSDPFR----SPYYNIELKELRVAGKPLKVSP 157 (455)
Q Consensus 83 ~~~S~~~qL~~~g~I~~~FSl~L~~~~-~~~G~I~fGg~d~s~~~~~~~~~~~~----~~~w~V~l~~I~Vgg~~l~l~~ 157 (455)
..+|++.||..+ .+++||+||.+.+ ...|+|+|||+|+. ...+.|.+... ..+|.|++++|.||++.+.+++
T Consensus 90 ~~~s~~~ql~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~ 166 (299)
T cd05472 90 GKLSLPSQTASS--YGGVFSYCLPDRSSSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPP 166 (299)
T ss_pred CcchHHHHhhHh--hcCceEEEccCCCCCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCc
Confidence 999999998765 4589999998754 45799999999997 33444443332 3689999999999999887543
Q ss_pred ccccCCCcEEEccccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeE
Q 012841 158 RIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQK 237 (455)
Q Consensus 158 ~~f~~~~~aiiDSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~ 237 (455)
... .+..++|||||++++||+++|++|.+++.++....... ........|+... +.. ...+|+|+|+|+++.+
T Consensus 167 ~~~-~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~C~~~~---~~~-~~~~P~i~f~f~~g~~ 239 (299)
T cd05472 167 ASF-GAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRA--PGFSILDTCYDLS---GFR-SVSVPTVSLHFQGGAD 239 (299)
T ss_pred ccc-CCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCC--CCCCCCCccCcCC---CCc-CCccCCEEEEECCCCE
Confidence 221 34589999999999999999999999998776432111 1111233587532 211 2489999999966899
Q ss_pred EEeCCCCceEEecccCCeEEEEEEEcC--CCCeeecceeeeeEEEEEECCCCEEEEeecCC
Q 012841 238 LTLSPENYLFRHMKVSGAYCLGIFQNS--DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (455)
Q Consensus 238 i~l~p~~Yi~~~~~~~~~~Cl~~~~~~--~~~~ILG~~Flr~~yvVFD~en~rIGFa~s~C 296 (455)
+.|+|++|++.... .+..|+++.... .+.+|||+.|||++|+|||++++|||||+.+|
T Consensus 240 ~~l~~~~y~~~~~~-~~~~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 240 VELDASGVLYPVDD-SSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEeCcccEEEEecC-CCCEEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 99999999984322 467899877653 46799999999999999999999999999999
No 3
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=5.8e-40 Score=342.60 Aligned_cols=282 Identities=25% Similarity=0.493 Sum_probs=222.2
Q ss_pred CCCccccccCCC-CCC-------CCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCCC--cccccceEEEEEEeccCCCC
Q 012841 1 MSNTYQALKCNP-DCN-------CDNDRKECIYERRYAEMSTSSGVLGVDVISFGNES--ELVPQRAVFGCENLETGDLY 70 (455)
Q Consensus 1 ~SsT~~~v~C~~-~C~-------C~~~~~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~--~~~~~~~~fG~~~~~s~~~~ 70 (455)
+||||+.++|++ .|. |... +.|.|.+.|+||+.+.|.+++|+|+|++.. ..+++++.|||++...+.+.
T Consensus 131 ~SST~~~~~C~s~~C~~~~~~~~c~~~-~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~ 209 (431)
T PLN03146 131 KSSTYKDVSCDSSQCQALGNQASCSDE-NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD 209 (431)
T ss_pred CCCCCcccCCCCcccccCCCCCCCCCC-CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc
Confidence 599999999995 474 6543 579999999999988999999999998742 13578999999998776443
Q ss_pred CCCCceEEeeCCCCCChHHHHHhcCCCCCceEEeecCCC---CCCceEEECCCCCCCC--ceeeecCCC-CCCceEEEee
Q 012841 71 TQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMD---VGGGAMVLGGITPPPD--MVFSHSDPF-RSPYYNIELK 144 (455)
Q Consensus 71 ~~~~dGILGLG~~~~S~~~qL~~~g~I~~~FSl~L~~~~---~~~G~I~fGg~d~s~~--~~~~~~~~~-~~~~w~V~l~ 144 (455)
...+||||||++.+|+++||... +.++||+||.+.. ...|.|+||+...... ..++++... ...+|.|+|+
T Consensus 210 -~~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~ 286 (431)
T PLN03146 210 -EKGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLE 286 (431)
T ss_pred -CCCceeEecCCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEE
Confidence 35799999999999999999753 5579999997522 2479999999533222 334443211 2468999999
Q ss_pred eeEEcCEEeeeCCcccc--CCCcEEEccccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCccccc
Q 012841 145 ELRVAGKPLKVSPRIFD--GGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELS 222 (455)
Q Consensus 145 ~I~Vgg~~l~l~~~~f~--~~~~aiiDSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 222 (455)
+|.||++.+.++...|. +...++|||||++++||+++|++|.++|.+++..... .. .....+.||+... .
T Consensus 287 gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~-~~-~~~~~~~C~~~~~----~-- 358 (431)
T PLN03146 287 AISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERV-SD-PQGLLSLCYSSTS----D-- 358 (431)
T ss_pred EEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccC-CC-CCCCCCccccCCC----C--
Confidence 99999999988765542 3457999999999999999999999999888753211 11 1123578986321 1
Q ss_pred CCCCeEEEEEcCCeEEEeCCCCceEEecccCCeEEEEEEEcCCCCeeecceeeeeEEEEEECCCCEEEEeecCCCc
Q 012841 223 KTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSE 298 (455)
Q Consensus 223 ~~lP~i~f~f~~g~~i~l~p~~Yi~~~~~~~~~~Cl~~~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFa~s~C~~ 298 (455)
..+|+|+|+| +|.++.|+|++|++.... +.+|+++... .+.+|||+.|||++|++||++++||||++.+|+.
T Consensus 359 ~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~--~~~Cl~~~~~-~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 359 IKLPIITAHF-TGADVKLQPLNTFVKVSE--DLVCFAMIPT-SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred CCCCeEEEEE-CCCeeecCcceeEEEcCC--CcEEEEEecC-CCceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 3789999999 689999999999987653 6789987754 4579999999999999999999999999999974
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-40 Score=338.31 Aligned_cols=286 Identities=34% Similarity=0.650 Sum_probs=234.8
Q ss_pred CCCccccccCCCC-C----CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCCC-CCC
Q 012841 1 MSNTYQALKCNPD-C----NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRA 74 (455)
Q Consensus 1 ~SsT~~~v~C~~~-C----~C~~~~~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~~-~~~ 74 (455)
.||||+.+.|++. | .|...++.|+|++.|+||++++|.+++|+|++++...+..+++.|||+..+.+.+.. ...
T Consensus 94 ~SSt~~~~~c~~~~c~~~~~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~ 173 (398)
T KOG1339|consen 94 ASSTYKSVGCSSPRCKSLPQSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAF 173 (398)
T ss_pred ccccccccCCCCccccccccCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCcccccccccc
Confidence 5999999999974 5 244467899999999998889999999999999853246778999999999876222 568
Q ss_pred ceEEeeCCCCCChHHHHHhcCCCCCceEEeecCCCC---CCceEEECCCCCCCC-ceeeecCCCCCC--ceEEEeeeeEE
Q 012841 75 DGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMDV---GGGAMVLGGITPPPD-MVFSHSDPFRSP--YYNIELKELRV 148 (455)
Q Consensus 75 dGILGLG~~~~S~~~qL~~~g~I~~~FSl~L~~~~~---~~G~I~fGg~d~s~~-~~~~~~~~~~~~--~w~V~l~~I~V 148 (455)
|||||||+..+++..|+...+...++||+||.+.+. .+|.|+||++|+.+. ..+.+++..... +|.|++++|.|
T Consensus 174 dGIlGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~v 253 (398)
T KOG1339|consen 174 DGILGLGRGSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISV 253 (398)
T ss_pred ceEeecCCCCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEE
Confidence 999999999999999999987777899999998653 479999999999973 335555555455 99999999999
Q ss_pred cCEEeeeCCccccC-CCcEEEccccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCe
Q 012841 149 AGKPLKVSPRIFDG-GHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQ 227 (455)
Q Consensus 149 gg~~l~l~~~~f~~-~~~aiiDSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~ 227 (455)
|++. .++...+.. ..++++||||++++||+++|++|.++|.+++. . ......+...|+...... ..+|.
T Consensus 254 gg~~-~~~~~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~---~~~~~~~~~~C~~~~~~~-----~~~P~ 323 (398)
T KOG1339|consen 254 GGKR-PIGSSLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-V---VGTDGEYFVPCFSISTSG-----VKLPD 323 (398)
T ss_pred CCcc-CCCcceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhhee-c---cccCCceeeecccCCCCc-----ccCCc
Confidence 9987 666566655 47899999999999999999999999988751 0 223445677998754322 36999
Q ss_pred EEEEEcCCeEEEeCCCCceEEecccCCeEEEEEEEcCC--CCeeecceeeeeEEEEEECC-CCEEEEee--cCCC
Q 012841 228 VDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD--STTLLGGIVVRNTLVTYDRG-NDKVGFWK--TNCS 297 (455)
Q Consensus 228 i~f~f~~g~~i~l~p~~Yi~~~~~~~~~~Cl~~~~~~~--~~~ILG~~Flr~~yvVFD~e-n~rIGFa~--s~C~ 297 (455)
|+|+|++|+.|.+++++|+++....... |++++...+ ..||||+.||++++++||.. ++||||++ ..|.
T Consensus 324 i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 324 ITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9999955999999999999998652222 999998873 48999999999999999999 99999999 6675
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.8e-39 Score=327.59 Aligned_cols=252 Identities=27% Similarity=0.473 Sum_probs=199.6
Q ss_pred CCCccccccCCCC-C--CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCCCcc----cccceEEEEEEeccCCCCCCC
Q 012841 1 MSNTYQALKCNPD-C--NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNESEL----VPQRAVFGCENLETGDLYTQR 73 (455)
Q Consensus 1 ~SsT~~~v~C~~~-C--~C~~~~~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~----~~~~~~fG~~~~~s~~~~~~~ 73 (455)
+|+||+.++|++. | .|...++.|+|++.|++|+.+.|.+++|+|+|++.... ...++.|||+..+.+.+....
T Consensus 50 ~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~ 129 (326)
T cd06096 50 NSITSSILYCDCNKCCYCLSCLNNKCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQ 129 (326)
T ss_pred cccccccccCCCccccccCcCCCCcCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccc
Confidence 4899999999963 5 11123567999999999988899999999999875310 123578999998887666667
Q ss_pred CceEEeeCCCCC----ChHHHHHhcCCCC---CceEEeecCCCCCCceEEECCCCCCC-C----------ceeeecCCCC
Q 012841 74 ADGIMGLGRGRL----SVVDQLVEKGVIS---DSFSLCYGGMDVGGGAMVLGGITPPP-D----------MVFSHSDPFR 135 (455)
Q Consensus 74 ~dGILGLG~~~~----S~~~qL~~~g~I~---~~FSl~L~~~~~~~G~I~fGg~d~s~-~----------~~~~~~~~~~ 135 (455)
.|||||||+... +...+|.+++.+. ++||+||.+ .+|.|+|||+|+.+ . ..+.|.+...
T Consensus 130 ~~GilGLg~~~~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~---~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~ 206 (326)
T cd06096 130 ATGILGLSLTKNNGLPTPIILLFTKRPKLKKDKIFSICLSE---DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR 206 (326)
T ss_pred cceEEEccCCcccccCchhHHHHHhcccccCCceEEEEEcC---CCeEEEECccChhhhcccccccccccCCceEEeccC
Confidence 899999999874 3445577776654 789999986 36999999999875 2 3455555555
Q ss_pred CCceEEEeeeeEEcCEEeeeCCccccCCCcEEEccccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCc
Q 012841 136 SPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAG 215 (455)
Q Consensus 136 ~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiDSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~ 215 (455)
..+|.|++++|.|+++..... ...+..++|||||++++||+++|++|.+++
T Consensus 207 ~~~y~v~l~~i~vg~~~~~~~---~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------------------- 257 (326)
T cd06096 207 KYYYYVKLEGLSVYGTTSNSG---NTKGLGMLVDSGSTLSHFPEDLYNKINNFF-------------------------- 257 (326)
T ss_pred CceEEEEEEEEEEccccccee---cccCCCEEEeCCCCcccCCHHHHHHHHhhc--------------------------
Confidence 689999999999999861110 124568999999999999999999988553
Q ss_pred CCcccccCCCCeEEEEEcCCeEEEeCCCCceEEecccCCeEEEEEEEcCCCCeeecceeeeeEEEEEECCCCEEEEeecC
Q 012841 216 RDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 295 (455)
Q Consensus 216 ~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~~~~~~~~Cl~~~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFa~s~ 295 (455)
|+|+|.|++|+++.|+|++|+..... .. |...+...++.+|||++|||++|+|||++++|||||+++
T Consensus 258 ----------P~i~~~f~~g~~~~i~p~~y~~~~~~--~~-c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~ 324 (326)
T cd06096 258 ----------PTITIIFENNLKIDWKPSSYLYKKES--FW-CKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESN 324 (326)
T ss_pred ----------CcEEEEEcCCcEEEECHHHhccccCC--ce-EEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCC
Confidence 89999996589999999999987643 33 444555556789999999999999999999999999999
Q ss_pred CC
Q 012841 296 CS 297 (455)
Q Consensus 296 C~ 297 (455)
|.
T Consensus 325 C~ 326 (326)
T cd06096 325 CP 326 (326)
T ss_pred CC
Confidence 94
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3.7e-39 Score=324.00 Aligned_cols=243 Identities=25% Similarity=0.478 Sum_probs=202.1
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCCC-CCCceEEeeCCCCC------ChHHHHHh
Q 012841 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRADGIMGLGRGRL------SVVDQLVE 93 (455)
Q Consensus 21 ~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~~-~~~dGILGLG~~~~------S~~~qL~~ 93 (455)
..|.|++.|++|+ ++|.+++|+|+|++ +++.++.|||++.+.+.+.. ...|||||||++.+ +++++|++
T Consensus 64 ~~~~~~~~yg~gs-~~G~~~~D~v~ig~---~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 139 (317)
T cd05478 64 TGQPLSIQYGTGS-MTGILGYDTVQVGG---ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMS 139 (317)
T ss_pred CCcEEEEEECCce-EEEEEeeeEEEECC---EEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHh
Confidence 4689999999998 69999999999998 47789999999887765443 35799999999754 48999999
Q ss_pred cCCCC-CceEEeecCCCCCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEccc
Q 012841 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSG 171 (455)
Q Consensus 94 ~g~I~-~~FSl~L~~~~~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiDSG 171 (455)
+|+|+ ++||+||.+.+..+|.|+|||+|+.+ .+.+.|++.....+|.|.++++.||++.+... .+..++||||
T Consensus 140 ~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~-----~~~~~iiDTG 214 (317)
T cd05478 140 QGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACS-----GGCQAIVDTG 214 (317)
T ss_pred CCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccC-----CCCEEEECCC
Confidence 99998 89999999865567999999999876 45666666566789999999999999987532 3458999999
Q ss_pred cceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEEecc
Q 012841 172 TTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMK 251 (455)
Q Consensus 172 Ts~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~~~ 251 (455)
|+++++|++++++|.+++..... ....+..+|.. . .++|.|+|+| +|+++.|+|++|+.+.
T Consensus 215 ts~~~lp~~~~~~l~~~~~~~~~-------~~~~~~~~C~~--------~-~~~P~~~f~f-~g~~~~i~~~~y~~~~-- 275 (317)
T cd05478 215 TSLLVGPSSDIANIQSDIGASQN-------QNGEMVVNCSS--------I-SSMPDVVFTI-NGVQYPLPPSAYILQD-- 275 (317)
T ss_pred chhhhCCHHHHHHHHHHhCCccc-------cCCcEEeCCcC--------c-ccCCcEEEEE-CCEEEEECHHHheecC--
Confidence 99999999999999998854321 12234456642 2 3789999999 8999999999999865
Q ss_pred cCCeEEEEEEEcC--CCCeeecceeeeeEEEEEECCCCEEEEee
Q 012841 252 VSGAYCLGIFQNS--DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (455)
Q Consensus 252 ~~~~~Cl~~~~~~--~~~~ILG~~Flr~~yvVFD~en~rIGFa~ 293 (455)
...|++.++.. .+.||||++|||++|+|||++++|||||+
T Consensus 276 --~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 --QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 56899877765 46799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=6e-39 Score=323.47 Aligned_cols=247 Identities=24% Similarity=0.422 Sum_probs=199.3
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCC-CCCCCCceEEeeCCCCC------ChHHHHHh
Q 012841 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVE 93 (455)
Q Consensus 21 ~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGILGLG~~~~------S~~~qL~~ 93 (455)
..|.|.+.|++|+ ++|.+++|+|++++ .++.++.|||++++++. +.....|||||||++.+ +++++|++
T Consensus 62 ~~~~~~i~Yg~G~-~~G~~~~D~v~~g~---~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 137 (325)
T cd05490 62 NGTEFAIQYGSGS-LSGYLSQDTVSIGG---LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMA 137 (325)
T ss_pred CCcEEEEEECCcE-EEEEEeeeEEEECC---EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHh
Confidence 3689999999997 69999999999998 47789999999987664 33456799999999765 47899999
Q ss_pred cCCCC-CceEEeecCCC--CCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEc
Q 012841 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (455)
Q Consensus 94 ~g~I~-~~FSl~L~~~~--~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiD 169 (455)
+|+|+ ++||+||.++. ..+|+|+|||+|+.+ .+.+.|.+.....+|.|++++|.||++.... .....++||
T Consensus 138 ~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~-----~~~~~aiiD 212 (325)
T cd05490 138 QKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLC-----KGGCEAIVD 212 (325)
T ss_pred cCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeec-----CCCCEEEEC
Confidence 99998 88999998642 246999999999986 4556666556678999999999999874321 234589999
Q ss_pred cccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEEe
Q 012841 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (455)
Q Consensus 170 SGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~ 249 (455)
|||+++++|++++++|.+++.+. . .....|..+|.. . ..+|+|+|+| +|+.|.|+|++|+++.
T Consensus 213 SGTt~~~~p~~~~~~l~~~~~~~----~---~~~~~~~~~C~~--------~-~~~P~i~f~f-gg~~~~l~~~~y~~~~ 275 (325)
T cd05490 213 TGTSLITGPVEEVRALQKAIGAV----P---LIQGEYMIDCEK--------I-PTLPVISFSL-GGKVYPLTGEDYILKV 275 (325)
T ss_pred CCCccccCCHHHHHHHHHHhCCc----c---ccCCCEEecccc--------c-ccCCCEEEEE-CCEEEEEChHHeEEec
Confidence 99999999999999999988532 1 112244556642 2 3789999999 8999999999999976
Q ss_pred cccCCeEEEEEEEcC------CCCeeecceeeeeEEEEEECCCCEEEEee
Q 012841 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (455)
Q Consensus 250 ~~~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFa~ 293 (455)
.......|++.+... .+.||||++|||++|+|||++++|||||+
T Consensus 276 ~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 276 SQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred cCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 543456899876541 45799999999999999999999999985
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.4e-38 Score=334.88 Aligned_cols=246 Identities=19% Similarity=0.308 Sum_probs=202.0
Q ss_pred eEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCC-CCCCCCceEEeeCCCCC---------ChHHHHHh
Q 012841 24 IYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL---------SVVDQLVE 93 (455)
Q Consensus 24 ~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGILGLG~~~~---------S~~~qL~~ 93 (455)
.+.++|++|+ .+|.+++|+|++++ ++++++.|||++.+++. +....+|||||||++.+ +++++|++
T Consensus 182 ~~~i~YGsGs-~~G~l~~DtV~ig~---l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~ 257 (482)
T PTZ00165 182 ETYIQYGTGE-CVLALGKDTVKIGG---LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKK 257 (482)
T ss_pred eEEEEeCCCc-EEEEEEEEEEEECC---EEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHH
Confidence 5779999997 48999999999998 57889999999988654 44567899999999764 58999999
Q ss_pred cCCCC-CceEEeecCCCCCCceEEECCCCCCC---CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEc
Q 012841 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP---DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (455)
Q Consensus 94 ~g~I~-~~FSl~L~~~~~~~G~I~fGg~d~s~---~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiD 169 (455)
||+|+ ++||+||.++...+|+|+|||+|+.+ ...+.|++.....+|.|.+++|.||++.+... ..+..+++|
T Consensus 258 qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~----~~~~~aIiD 333 (482)
T PTZ00165 258 QNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFC----DRKCKAAID 333 (482)
T ss_pred cCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeec----CCceEEEEc
Confidence 99998 89999998765568999999999875 24577777777889999999999999877653 234689999
Q ss_pred cccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcC--C--eEEEeCCCCc
Q 012841 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGN--G--QKLTLSPENY 245 (455)
Q Consensus 170 SGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~--g--~~i~l~p~~Y 245 (455)
|||+++++|++++++|.+++.. ..+|.. . +.+|+|+|+|++ | +++.|+|++|
T Consensus 334 TGTSli~lP~~~~~~i~~~i~~---------------~~~C~~--------~-~~lP~itf~f~g~~g~~v~~~l~p~dY 389 (482)
T PTZ00165 334 TGSSLITGPSSVINPLLEKIPL---------------EEDCSN--------K-DSLPRISFVLEDVNGRKIKFDMDPEDY 389 (482)
T ss_pred CCCccEeCCHHHHHHHHHHcCC---------------cccccc--------c-ccCCceEEEECCCCCceEEEEEchHHe
Confidence 9999999999999999988731 125642 2 479999999942 1 4899999999
Q ss_pred eEEec--ccCCeEEEEEEEcC------CCCeeecceeeeeEEEEEECCCCEEEEeecCCCcccc
Q 012841 246 LFRHM--KVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWR 301 (455)
Q Consensus 246 i~~~~--~~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFa~s~C~~~~~ 301 (455)
+.+.. ...+..|+..+... ++.||||++|||++|+|||++|+|||||+++|.....
T Consensus 390 i~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~~~ 453 (482)
T PTZ00165 390 VIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQSGP 453 (482)
T ss_pred eeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCCCC
Confidence 99752 22456898766542 3579999999999999999999999999999876443
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.3e-38 Score=319.83 Aligned_cols=247 Identities=25% Similarity=0.469 Sum_probs=200.4
Q ss_pred CCCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCC-CCCCCCceEEeeCCCCC------ChHHHHH
Q 012841 20 RKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLV 92 (455)
Q Consensus 20 ~~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGILGLG~~~~------S~~~qL~ 92 (455)
+..|+|++.|++|+ ++|.+++|+|+|++ +++.++.|||+..+.+. +.....|||||||++.+ +++++|+
T Consensus 53 ~~~~~~~i~Yg~g~-~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~ 128 (316)
T cd05486 53 SNGEAFSIQYGTGS-LTGIIGIDQVTVEG---ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMM 128 (316)
T ss_pred cCCcEEEEEeCCcE-EEEEeeecEEEECC---EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHH
Confidence 34799999999996 69999999999998 57789999999877654 33457899999999765 4689999
Q ss_pred hcCCCC-CceEEeecCCC--CCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEE
Q 012841 93 EKGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVL 168 (455)
Q Consensus 93 ~~g~I~-~~FSl~L~~~~--~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aii 168 (455)
++|+|+ ++||+||.++. ...|+|+|||+|+++ .+.+.|.+.....+|.|.+++|.||++.+... ....++|
T Consensus 129 ~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~-----~~~~aii 203 (316)
T cd05486 129 AQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCS-----DGCQAIV 203 (316)
T ss_pred hcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecC-----CCCEEEE
Confidence 999998 78999998642 347999999999986 45566666667789999999999999876432 3458999
Q ss_pred ccccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEE
Q 012841 169 DSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFR 248 (455)
Q Consensus 169 DSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~ 248 (455)
||||+++++|++++++|.+++.+.. .+..|..+|.. . ..+|+|+|+| +|+.++|+|++|+..
T Consensus 204 DTGTs~~~lP~~~~~~l~~~~~~~~--------~~~~~~~~C~~--------~-~~~p~i~f~f-~g~~~~l~~~~y~~~ 265 (316)
T cd05486 204 DTGTSLITGPSGDIKQLQNYIGATA--------TDGEYGVDCST--------L-SLMPSVTFTI-NGIPYSLSPQAYTLE 265 (316)
T ss_pred CCCcchhhcCHHHHHHHHHHhCCcc--------cCCcEEEeccc--------c-ccCCCEEEEE-CCEEEEeCHHHeEEe
Confidence 9999999999999999988774321 12334556632 2 4799999999 899999999999987
Q ss_pred ecccCCeEEEEEEEcC------CCCeeecceeeeeEEEEEECCCCEEEEee
Q 012841 249 HMKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (455)
Q Consensus 249 ~~~~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFa~ 293 (455)
........|++.++.. .+.||||++|||++|+|||.+++|||||+
T Consensus 266 ~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 266 DQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred cccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 5332456899876542 35799999999999999999999999996
No 10
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.8e-38 Score=309.85 Aligned_cols=224 Identities=38% Similarity=0.688 Sum_probs=190.1
Q ss_pred ceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCCCCCCceEEeeCCCCCChHHHHHhcCCCCCceE
Q 012841 23 CIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFS 102 (455)
Q Consensus 23 C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~~~~~dGILGLG~~~~S~~~qL~~~g~I~~~FS 102 (455)
|.|.++|+||+.++|.+++|+|+|++.. .+++++.|||+..+++ +.....+||||||+...|+++||..++ ++||
T Consensus 31 ~~~~~~Y~dg~~~~G~~~~D~v~~g~~~-~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs 105 (265)
T cd05476 31 CSYEYSYGDGSSTSGVLATETFTFGDSS-VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFS 105 (265)
T ss_pred CceEeEeCCCceeeeeEEEEEEEecCCC-CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeE
Confidence 8899999999889999999999999842 2678999999999877 555678999999999999999999887 8999
Q ss_pred EeecCC--CCCCceEEECCCCCCCCceeeecCCCC----CCceEEEeeeeEEcCEEeeeCCcc----ccCCCcEEEcccc
Q 012841 103 LCYGGM--DVGGGAMVLGGITPPPDMVFSHSDPFR----SPYYNIELKELRVAGKPLKVSPRI----FDGGHGTVLDSGT 172 (455)
Q Consensus 103 l~L~~~--~~~~G~I~fGg~d~s~~~~~~~~~~~~----~~~w~V~l~~I~Vgg~~l~l~~~~----f~~~~~aiiDSGT 172 (455)
+||.+. +..+|+|+|||+|+.+...+.|.+... ..+|.|++++|.|+++.+.++... ......++|||||
T Consensus 106 ~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGT 185 (265)
T cd05476 106 YCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGT 185 (265)
T ss_pred EEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCC
Confidence 999874 356899999999987533444443332 579999999999999988654322 1245689999999
Q ss_pred ceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEEeccc
Q 012841 173 TYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKV 252 (455)
Q Consensus 173 s~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~~~~ 252 (455)
++++||+++| |+|+|+|++++++.+++++|+....
T Consensus 186 s~~~lp~~~~-------------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~-- 220 (265)
T cd05476 186 TLTYLPDPAY-------------------------------------------PDLTLHFDGGADLELPPENYFVDVG-- 220 (265)
T ss_pred cceEcCcccc-------------------------------------------CCEEEEECCCCEEEeCcccEEEECC--
Confidence 9999999876 7899999559999999999998653
Q ss_pred CCeEEEEEEEcC-CCCeeecceeeeeEEEEEECCCCEEEEeecCC
Q 012841 253 SGAYCLGIFQNS-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (455)
Q Consensus 253 ~~~~Cl~~~~~~-~~~~ILG~~Flr~~yvVFD~en~rIGFa~s~C 296 (455)
.+..|++++... .+.||||++|||++|++||++++|||||+++|
T Consensus 221 ~~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 221 EGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 367999988774 78899999999999999999999999999999
No 11
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.4e-38 Score=319.32 Aligned_cols=246 Identities=24% Similarity=0.460 Sum_probs=201.0
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccC-CCCCCCCceEEeeCCCCC------ChHHHHHh
Q 012841 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETG-DLYTQRADGIMGLGRGRL------SVVDQLVE 93 (455)
Q Consensus 21 ~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~-~~~~~~~dGILGLG~~~~------S~~~qL~~ 93 (455)
..|.|++.|++|+ ++|.+++|+|++++. .+ ++.||++..... .+.....|||||||++.. +++++|++
T Consensus 64 ~~~~~~~~Yg~g~-~~G~~~~D~v~~g~~---~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 138 (326)
T cd05487 64 NGTEFTIHYASGT-VKGFLSQDIVTVGGI---PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMS 138 (326)
T ss_pred CCEEEEEEeCCce-EEEEEeeeEEEECCE---Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHh
Confidence 4799999999997 799999999999984 33 478999987543 233346899999999754 57899999
Q ss_pred cCCCC-CceEEeecCCC--CCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEc
Q 012841 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (455)
Q Consensus 94 ~g~I~-~~FSl~L~~~~--~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiD 169 (455)
||+|+ ++||+||.+.. ...|+|+|||+|+++ .+.+.+++.....+|.|.++++.|+++.+... .+..++||
T Consensus 139 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~-----~~~~aiiD 213 (326)
T cd05487 139 QGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCE-----DGCTAVVD 213 (326)
T ss_pred cCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecC-----CCCEEEEC
Confidence 99998 88999998743 357999999999987 56677777777889999999999999976532 34589999
Q ss_pred cccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEEe
Q 012841 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (455)
Q Consensus 170 SGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~ 249 (455)
|||+++++|.+++++|++++.+... ...|..+|.. . .++|+|+|+| ++.++.|++++|+++.
T Consensus 214 SGts~~~lP~~~~~~l~~~~~~~~~--------~~~y~~~C~~--------~-~~~P~i~f~f-gg~~~~v~~~~yi~~~ 275 (326)
T cd05487 214 TGASFISGPTSSISKLMEALGAKER--------LGDYVVKCNE--------V-PTLPDISFHL-GGKEYTLSSSDYVLQD 275 (326)
T ss_pred CCccchhCcHHHHHHHHHHhCCccc--------CCCEEEeccc--------c-CCCCCEEEEE-CCEEEEeCHHHhEEec
Confidence 9999999999999999998853321 2234556642 2 4789999999 8999999999999987
Q ss_pred cccCCeEEEEEEEcC------CCCeeecceeeeeEEEEEECCCCEEEEeec
Q 012841 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (455)
Q Consensus 250 ~~~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFa~s 294 (455)
.+..+..|+..++.. .+.||||++|||++|+|||++++|||||++
T Consensus 276 ~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 276 SDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred cCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 554567898777642 357999999999999999999999999985
No 12
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.9e-38 Score=316.64 Aligned_cols=245 Identities=21% Similarity=0.453 Sum_probs=199.0
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCC-CCCCCCceEEeeCCCC------CChHHHHHh
Q 012841 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGR------LSVVDQLVE 93 (455)
Q Consensus 21 ~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGILGLG~~~------~S~~~qL~~ 93 (455)
..|.|++.|++|+ +.|.+++|+|++++ .+++++.|||++...+. +.....|||||||++. .+++++|++
T Consensus 57 ~~~~~~~~Yg~Gs-~~G~~~~D~i~~g~---~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~ 132 (318)
T cd05477 57 NGETFSLQYGSGS-LTGIFGYDTVTVQG---IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQ 132 (318)
T ss_pred CCcEEEEEECCcE-EEEEEEeeEEEECC---EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHh
Confidence 4699999999997 59999999999998 47789999999987653 2334679999999964 369999999
Q ss_pred cCCCC-CceEEeecCCC-CCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEcc
Q 012841 94 KGVIS-DSFSLCYGGMD-VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS 170 (455)
Q Consensus 94 ~g~I~-~~FSl~L~~~~-~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiDS 170 (455)
+|+|. ++||+||.++. ..+|.|+|||+|+.+ ...+.|++.....+|.|++++|.||++.+.+. ..+..++|||
T Consensus 133 ~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~----~~~~~~iiDS 208 (318)
T cd05477 133 QNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWC----SQGCQAIVDT 208 (318)
T ss_pred cCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEeccc----CCCceeeECC
Confidence 99998 89999998742 346999999999886 44566666566789999999999999977542 2345799999
Q ss_pred ccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEEec
Q 012841 171 GTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHM 250 (455)
Q Consensus 171 GTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~~ 250 (455)
||+++++|++++++|++++..+.. ....|..+|.. . .++|+|+|+| +|+++.|++++|+...
T Consensus 209 Gtt~~~lP~~~~~~l~~~~~~~~~-------~~~~~~~~C~~--------~-~~~p~l~~~f-~g~~~~v~~~~y~~~~- 270 (318)
T cd05477 209 GTSLLTAPQQVMSTLMQSIGAQQD-------QYGQYVVNCNN--------I-QNLPTLTFTI-NGVSFPLPPSAYILQN- 270 (318)
T ss_pred CCccEECCHHHHHHHHHHhCCccc-------cCCCEEEeCCc--------c-ccCCcEEEEE-CCEEEEECHHHeEecC-
Confidence 999999999999999998865432 12234455642 2 4789999999 8899999999999874
Q ss_pred ccCCeEEEEEEEcC-------CCCeeecceeeeeEEEEEECCCCEEEEeec
Q 012841 251 KVSGAYCLGIFQNS-------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (455)
Q Consensus 251 ~~~~~~Cl~~~~~~-------~~~~ILG~~Flr~~yvVFD~en~rIGFa~s 294 (455)
...|+..+... .+.||||++|||++|++||++++|||||++
T Consensus 271 ---~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 ---NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ---CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 45798666431 246999999999999999999999999975
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=8.8e-38 Score=314.48 Aligned_cols=242 Identities=23% Similarity=0.459 Sum_probs=198.0
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCC-CCCCceEEeeCCCCC------ChHHHHHh
Q 012841 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLY-TQRADGIMGLGRGRL------SVVDQLVE 93 (455)
Q Consensus 21 ~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~-~~~~dGILGLG~~~~------S~~~qL~~ 93 (455)
..|.|++.|++|+ ++|.+++|+|++++ ++++++.|||+..+.+..+ ....|||||||++.. +.+.+|++
T Consensus 64 ~~~~~~~~y~~g~-~~G~~~~D~v~ig~---~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 139 (320)
T cd05488 64 NGTEFKIQYGSGS-LEGFVSQDTLSIGD---LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMIN 139 (320)
T ss_pred CCCEEEEEECCce-EEEEEEEeEEEECC---EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHh
Confidence 4799999999997 69999999999988 4778999999987765432 346799999999765 35678999
Q ss_pred cCCCC-CceEEeecCCCCCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEccc
Q 012841 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSG 171 (455)
Q Consensus 94 ~g~I~-~~FSl~L~~~~~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiDSG 171 (455)
+|+|. ++||+||.+.+..+|.|+|||+|+.+ ...+.|++.....+|.|++++|.||++.+..+ +..++||||
T Consensus 140 qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~------~~~~ivDSG 213 (320)
T cd05488 140 QGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELE------NTGAAIDTG 213 (320)
T ss_pred cCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccC------CCeEEEcCC
Confidence 99997 88999999865568999999999876 45566665556789999999999999877542 347999999
Q ss_pred cceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEEecc
Q 012841 172 TTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMK 251 (455)
Q Consensus 172 Ts~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~~~ 251 (455)
|+++++|++++++|.+++.+... ....|..+|. .. ..+|+|+|+| +|+++.|+|++|+...
T Consensus 214 tt~~~lp~~~~~~l~~~~~~~~~-------~~~~~~~~C~--------~~-~~~P~i~f~f-~g~~~~i~~~~y~~~~-- 274 (320)
T cd05488 214 TSLIALPSDLAEMLNAEIGAKKS-------WNGQYTVDCS--------KV-DSLPDLTFNF-DGYNFTLGPFDYTLEV-- 274 (320)
T ss_pred cccccCCHHHHHHHHHHhCCccc-------cCCcEEeecc--------cc-ccCCCEEEEE-CCEEEEECHHHheecC--
Confidence 99999999999999988743221 1223444564 22 3799999999 7999999999999854
Q ss_pred cCCeEEEEEEEcC------CCCeeecceeeeeEEEEEECCCCEEEEee
Q 012841 252 VSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (455)
Q Consensus 252 ~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFa~ 293 (455)
...|++.+... .+.||||++|||++|+|||++++|||||+
T Consensus 275 --~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 --SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred --CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 45799888653 34799999999999999999999999985
No 14
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.1e-37 Score=303.89 Aligned_cols=236 Identities=33% Similarity=0.664 Sum_probs=190.0
Q ss_pred CccccccCCCCC-CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCCC-cccccceEEEEEEeccCCC--CCCCCceEE
Q 012841 3 NTYQALKCNPDC-NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNES-ELVPQRAVFGCENLETGDL--YTQRADGIM 78 (455)
Q Consensus 3 sT~~~v~C~~~C-~C~~~~~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~-~~~~~~~~fG~~~~~s~~~--~~~~~dGIL 78 (455)
|+--++.|+..| .| .|.|+++|+|+++++|.+++|+|+++... .....++.|||+..+.+.. .....||||
T Consensus 24 S~~~Wv~c~~~c~~c-----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIl 98 (273)
T cd05475 24 SDLTWLQCDAPCTGC-----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGIL 98 (273)
T ss_pred CCceEEeCCCCCCCC-----cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEE
Confidence 444567786445 35 58899999988889999999999997431 1466789999998776543 234689999
Q ss_pred eeCCCCCChHHHHHhcCCCCCceEEeecCCCCCCceEEECCCCCCCCceeeecCCCC---CCceEEEeeeeEEcCEEeee
Q 012841 79 GLGRGRLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFR---SPYYNIELKELRVAGKPLKV 155 (455)
Q Consensus 79 GLG~~~~S~~~qL~~~g~I~~~FSl~L~~~~~~~G~I~fGg~d~s~~~~~~~~~~~~---~~~w~V~l~~I~Vgg~~l~l 155 (455)
|||++..|+++||.++++|+++||+||.+ ..+|.|+||+... +...+.|.+... ..+|.|++++|.||++.+.
T Consensus 99 GLg~~~~s~~~ql~~~~~i~~~Fs~~l~~--~~~g~l~~G~~~~-~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~- 174 (273)
T cd05475 99 GLGRGKISLPSQLASQGIIKNVIGHCLSS--NGGGFLFFGDDLV-PSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG- 174 (273)
T ss_pred ECCCCCCCHHHHHHhcCCcCceEEEEccC--CCCeEEEECCCCC-CCCCeeecccccCCCCCeEEEeEeEEEECCEECc-
Confidence 99999999999999999998899999986 3469999996433 223344544333 3799999999999998542
Q ss_pred CCccccCCCcEEEccccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCC
Q 012841 156 SPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNG 235 (455)
Q Consensus 156 ~~~~f~~~~~aiiDSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g 235 (455)
.....++|||||++++||+++| +|+|+|.|+++
T Consensus 175 -----~~~~~~ivDTGTt~t~lp~~~y------------------------------------------~p~i~~~f~~~ 207 (273)
T cd05475 175 -----GKGLEVVFDSGSSYTYFNAQAY------------------------------------------FKPLTLKFGKG 207 (273)
T ss_pred -----CCCceEEEECCCceEEcCCccc------------------------------------------cccEEEEECCC
Confidence 1345899999999999999865 57899999543
Q ss_pred ---eEEEeCCCCceEEecccCCeEEEEEEEcC----CCCeeecceeeeeEEEEEECCCCEEEEeecCC
Q 012841 236 ---QKLTLSPENYLFRHMKVSGAYCLGIFQNS----DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (455)
Q Consensus 236 ---~~i~l~p~~Yi~~~~~~~~~~Cl~~~~~~----~~~~ILG~~Flr~~yvVFD~en~rIGFa~s~C 296 (455)
++++|+|++|+..... +..|++++... .+.||||+.|||++|++||++++||||++++|
T Consensus 208 ~~~~~~~l~~~~y~~~~~~--~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 208 WRTRLLEIPPENYLIISEK--GNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CceeEEEeCCCceEEEcCC--CCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 7999999999987543 56899998764 35799999999999999999999999999999
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.6e-37 Score=313.83 Aligned_cols=246 Identities=23% Similarity=0.437 Sum_probs=199.8
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCC-CCCCCCceEEeeCCCCCC------hHHHHHh
Q 012841 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRLS------VVDQLVE 93 (455)
Q Consensus 21 ~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGILGLG~~~~S------~~~qL~~ 93 (455)
..|.|.+.|++|+ ++|.+++|+|++++ .++.++.|||+..+.+. +.....|||||||++..+ ++.+|++
T Consensus 67 ~~~~~~i~Y~~g~-~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~ 142 (329)
T cd05485 67 NGTEFAIQYGSGS-LSGFLSTDTVSVGG---VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVN 142 (329)
T ss_pred CCeEEEEEECCce-EEEEEecCcEEECC---EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHh
Confidence 3689999999997 69999999999998 46789999999887653 334568999999998764 6899999
Q ss_pred cCCCC-CceEEeecCCC--CCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEc
Q 012841 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (455)
Q Consensus 94 ~g~I~-~~FSl~L~~~~--~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiD 169 (455)
+|+|+ +.||+||.+.. ..+|+|+|||+|+.+ .+.+.+.+.....+|.|.++++.++++.+.. .+..++||
T Consensus 143 qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~------~~~~~iiD 216 (329)
T cd05485 143 QKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCS------GGCQAIAD 216 (329)
T ss_pred CCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecC------CCcEEEEc
Confidence 99997 78999998643 247999999999876 4556666556678999999999999986642 34579999
Q ss_pred cccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEEe
Q 012841 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (455)
Q Consensus 170 SGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~ 249 (455)
|||+++++|++++++|.+++.... . ....|..+|.. . .++|+|+|+| +++++.|+|++|+++.
T Consensus 217 SGtt~~~lP~~~~~~l~~~~~~~~-----~--~~~~~~~~C~~--------~-~~~p~i~f~f-gg~~~~i~~~~yi~~~ 279 (329)
T cd05485 217 TGTSLIAGPVDEIEKLNNAIGAKP-----I--IGGEYMVNCSA--------I-PSLPDITFVL-GGKSFSLTGKDYVLKV 279 (329)
T ss_pred cCCcceeCCHHHHHHHHHHhCCcc-----c--cCCcEEEeccc--------c-ccCCcEEEEE-CCEEeEEChHHeEEEe
Confidence 999999999999999998875321 1 11234556642 2 3689999999 8999999999999987
Q ss_pred cccCCeEEEEEEEcC------CCCeeecceeeeeEEEEEECCCCEEEEee
Q 012841 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (455)
Q Consensus 250 ~~~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFa~ 293 (455)
......+|++.+... ++.||||++|||++|+|||++++|||||+
T Consensus 280 ~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 280 TQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 654457899866632 35799999999999999999999999984
No 16
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.8e-37 Score=310.52 Aligned_cols=236 Identities=27% Similarity=0.452 Sum_probs=192.5
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCC-CCCCCCceEEeeCCCCC------ChHHHHHh
Q 012841 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVE 93 (455)
Q Consensus 21 ~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGILGLG~~~~------S~~~qL~~ 93 (455)
..+.+.+.|++|+ ++|.+++|+|++++ .+++++.||++..+.+. +.....|||||||++.. +++++|++
T Consensus 65 ~~~~~~i~Yg~G~-~~G~~~~D~v~ig~---~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 140 (317)
T cd06098 65 NGTSASIQYGTGS-ISGFFSQDSVTVGD---LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVE 140 (317)
T ss_pred CCCEEEEEcCCce-EEEEEEeeEEEECC---EEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHh
Confidence 3568999999987 59999999999998 47789999999877553 33457899999999765 47889999
Q ss_pred cCCCC-CceEEeecCCC--CCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEc
Q 012841 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (455)
Q Consensus 94 ~g~I~-~~FSl~L~~~~--~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiD 169 (455)
+|+|+ ++||+||++.. ..+|+|+|||+|+++ .+.+.|.+.....+|.|.+++|.||++.+.... ....++||
T Consensus 141 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~----~~~~aivD 216 (317)
T cd06098 141 QGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCA----GGCAAIAD 216 (317)
T ss_pred cCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecC----CCcEEEEe
Confidence 99998 78999998642 357999999999987 455666655567899999999999999876532 34579999
Q ss_pred cccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEEe
Q 012841 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (455)
Q Consensus 170 SGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~ 249 (455)
|||+++++|++++++|. +..+|+. . .++|+|+|+| +|+.+.|+|++|+++.
T Consensus 217 TGTs~~~lP~~~~~~i~-------------------~~~~C~~--------~-~~~P~i~f~f-~g~~~~l~~~~yi~~~ 267 (317)
T cd06098 217 SGTSLLAGPTTIVTQIN-------------------SAVDCNS--------L-SSMPNVSFTI-GGKTFELTPEQYILKV 267 (317)
T ss_pred cCCcceeCCHHHHHhhh-------------------ccCCccc--------c-ccCCcEEEEE-CCEEEEEChHHeEEee
Confidence 99999999998776553 2345643 1 3799999999 8999999999999876
Q ss_pred cccCCeEEEEEEEcC------CCCeeecceeeeeEEEEEECCCCEEEEee
Q 012841 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (455)
Q Consensus 250 ~~~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvVFD~en~rIGFa~ 293 (455)
.......|++.+... ++.||||++|||++|+|||++++|||||+
T Consensus 268 ~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 268 GEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred cCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 543456899876532 34799999999999999999999999995
No 17
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3e-37 Score=306.16 Aligned_cols=243 Identities=20% Similarity=0.347 Sum_probs=197.4
Q ss_pred eEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCCCCCCceEEeeCCCCC-----------ChHHHHH
Q 012841 24 IYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRL-----------SVVDQLV 92 (455)
Q Consensus 24 ~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~~~~~dGILGLG~~~~-----------S~~~qL~ 92 (455)
+|++.|++|..++|.+++|+|++++. .+.++.|||+++.. ..|||||||+... +++++|+
T Consensus 31 ~~~~~Y~~g~~~~G~~~~D~v~~g~~---~~~~~~fg~~~~~~------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~ 101 (295)
T cd05474 31 DFSISYGDGTSASGTWGTDTVSIGGA---TVKNLQFAVANSTS------SDVGVLGIGLPGNEATYGTGYTYPNFPIALK 101 (295)
T ss_pred eeEEEeccCCcEEEEEEEEEEEECCe---EecceEEEEEecCC------CCcceeeECCCCCcccccCCCcCCCHHHHHH
Confidence 69999999888999999999999984 66789999999842 4799999999876 6999999
Q ss_pred hcCCCC-CceEEeecCCCCCCceEEECCCCCCC-CceeeecCCCCC------CceEEEeeeeEEcCEEeeeCCccccCCC
Q 012841 93 EKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRS------PYYNIELKELRVAGKPLKVSPRIFDGGH 164 (455)
Q Consensus 93 ~~g~I~-~~FSl~L~~~~~~~G~I~fGg~d~s~-~~~~~~~~~~~~------~~w~V~l~~I~Vgg~~l~l~~~~f~~~~ 164 (455)
++|+|+ ++||+||.+.+...|.|+|||+|+.+ ...+.|.+.... .+|.|++++|.++++.+..+. .....
T Consensus 102 ~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~--~~~~~ 179 (295)
T cd05474 102 KQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL--LSKNL 179 (295)
T ss_pred HCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc--cCCCc
Confidence 999998 88999999755568999999999876 334444433332 789999999999998765321 23567
Q ss_pred cEEEccccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCC
Q 012841 165 GTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPEN 244 (455)
Q Consensus 165 ~aiiDSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~ 244 (455)
.++|||||++++||++++++|.+++.+.... ....+...|+. . .. |+|+|+| +|.++.|++++
T Consensus 180 ~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~------~~~~~~~~C~~--------~-~~-p~i~f~f-~g~~~~i~~~~ 242 (295)
T cd05474 180 PALLDSGTTLTYLPSDIVDAIAKQLGATYDS------DEGLYVVDCDA--------K-DD-GSLTFNF-GGATISVPLSD 242 (295)
T ss_pred cEEECCCCccEeCCHHHHHHHHHHhCCEEcC------CCcEEEEeCCC--------C-CC-CEEEEEE-CCeEEEEEHHH
Confidence 8999999999999999999999999765431 12345567753 2 23 9999999 78999999999
Q ss_pred ceEEecc--cCCeEEEEEEEcC-CCCeeecceeeeeEEEEEECCCCEEEEeec
Q 012841 245 YLFRHMK--VSGAYCLGIFQNS-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (455)
Q Consensus 245 Yi~~~~~--~~~~~Cl~~~~~~-~~~~ILG~~Flr~~yvVFD~en~rIGFa~s 294 (455)
|+++... ..+..|+..+... .+.||||++|||++|++||++++|||||++
T Consensus 243 ~~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 243 LVLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred hEeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9987642 2356787666655 478999999999999999999999999985
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.3e-36 Score=308.28 Aligned_cols=272 Identities=25% Similarity=0.377 Sum_probs=199.1
Q ss_pred CCCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCCC-CCCceEEeeCCCCC--------ChHHH
Q 012841 20 RKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRADGIMGLGRGRL--------SVVDQ 90 (455)
Q Consensus 20 ~~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~~-~~~dGILGLG~~~~--------S~~~q 90 (455)
...|.|++.|++|+ ++|.+++|+|+|++... ....+.|+++....+.+.. ...|||||||++.+ +++++
T Consensus 52 ~~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~-~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~ 129 (364)
T cd05473 52 DLGKGVTVPYTQGS-WEGELGTDLVSIPKGPN-VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDS 129 (364)
T ss_pred cCCceEEEEECcce-EEEEEEEEEEEECCCCc-cceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHH
Confidence 35899999999997 59999999999986321 1112345666555443332 36799999999765 58889
Q ss_pred HHhcCCCCCceEEeecCC---------CCCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccc
Q 012841 91 LVEKGVISDSFSLCYGGM---------DVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIF 160 (455)
Q Consensus 91 L~~~g~I~~~FSl~L~~~---------~~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f 160 (455)
|.+|+.++++||++|+.. ....|.|+|||+|+++ ...+.|.+.....+|.|.+++|.|+++.+.++...+
T Consensus 130 l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~ 209 (364)
T cd05473 130 LVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEY 209 (364)
T ss_pred HHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccc
Confidence 999999888999988631 1247999999999886 444555555566799999999999999887654332
Q ss_pred cCCCcEEEccccceeeecHHHHHHHHHHHHHhccccccccCC-CCCcccccccCCcCCcccccCCCCeEEEEEcC-----
Q 012841 161 DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGP-DPNYDDICFSGAGRDVSELSKTFPQVDMVFGN----- 234 (455)
Q Consensus 161 ~~~~~aiiDSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~----- 234 (455)
. ...++|||||++++||+++|++|.+++.++... ...... ...+...|+..... ....+|+|+|+|++
T Consensus 210 ~-~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~C~~~~~~----~~~~~P~i~~~f~g~~~~~ 283 (364)
T cd05473 210 N-YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPDGFWLGSQLACWQKGTT----PWEIFPKISIYLRDENSSQ 283 (364)
T ss_pred c-CccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCccccCcceeecccccCc----hHhhCCcEEEEEccCCCCc
Confidence 2 236999999999999999999999999876431 111100 01123467643211 11369999999954
Q ss_pred CeEEEeCCCCceEEeccc-CCeEEEEEEE-cCCCCeeecceeeeeEEEEEECCCCEEEEeecCCCcc
Q 012841 235 GQKLTLSPENYLFRHMKV-SGAYCLGIFQ-NSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSEL 299 (455)
Q Consensus 235 g~~i~l~p~~Yi~~~~~~-~~~~Cl~~~~-~~~~~~ILG~~Flr~~yvVFD~en~rIGFa~s~C~~~ 299 (455)
+.++.|+|++|+...... .+..|+++.. ...+.||||+.|||++|+|||++++|||||+++|...
T Consensus 284 ~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 284 SFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred eEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 247899999999864321 2468986332 2356799999999999999999999999999999874
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3e-36 Score=314.46 Aligned_cols=245 Identities=22% Similarity=0.333 Sum_probs=193.1
Q ss_pred CCCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccC--C-CCCCCCceEEeeCCCCC------ChHHH
Q 012841 20 RKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETG--D-LYTQRADGIMGLGRGRL------SVVDQ 90 (455)
Q Consensus 20 ~~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~--~-~~~~~~dGILGLG~~~~------S~~~q 90 (455)
...|.|++.|++|+ ++|.+++|+|++++. +.. ..|+++....+ . +....+|||||||++.+ +++++
T Consensus 191 ~~~~~~~i~YG~Gs-v~G~~~~Dtv~iG~~---~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~ 265 (450)
T PTZ00013 191 KDGTKVDITYGSGT-VKGFFSKDLVTLGHL---SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVE 265 (450)
T ss_pred cCCcEEEEEECCce-EEEEEEEEEEEECCE---EEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHH
Confidence 34689999999997 799999999999984 444 57888876542 1 22346899999999865 47899
Q ss_pred HHhcCCCC-CceEEeecCCCCCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEE
Q 012841 91 LVEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVL 168 (455)
Q Consensus 91 L~~~g~I~-~~FSl~L~~~~~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aii 168 (455)
|+++|+|+ ++||+||.+.+...|.|+|||+|+++ .+.+.|.+.....+|.|.++ +.+|.... .+..++|
T Consensus 266 L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~--------~~~~aIl 336 (450)
T PTZ00013 266 LKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM--------QKANVIV 336 (450)
T ss_pred HHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec--------cccceEE
Confidence 99999998 78999998755568999999999987 45566666566789999998 66665432 2457999
Q ss_pred ccccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEE
Q 012841 169 DSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFR 248 (455)
Q Consensus 169 DSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~ 248 (455)
||||+++++|+++++++.+++..... ...+.+..+|+. ..+|+|+|.| +|.+++|+|++|+..
T Consensus 337 DSGTSli~lP~~~~~~i~~~l~~~~~------~~~~~y~~~C~~----------~~lP~i~F~~-~g~~~~L~p~~Yi~~ 399 (450)
T PTZ00013 337 DSGTTTITAPSEFLNKFFANLNVIKV------PFLPFYVTTCDN----------KEMPTLEFKS-ANNTYTLEPEYYMNP 399 (450)
T ss_pred CCCCccccCCHHHHHHHHHHhCCeec------CCCCeEEeecCC----------CCCCeEEEEE-CCEEEEECHHHheeh
Confidence 99999999999999999988743211 112234556642 3789999999 789999999999976
Q ss_pred ecccCCeEEEEEEEcC---CCCeeecceeeeeEEEEEECCCCEEEEeecC
Q 012841 249 HMKVSGAYCLGIFQNS---DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 295 (455)
Q Consensus 249 ~~~~~~~~Cl~~~~~~---~~~~ILG~~Flr~~yvVFD~en~rIGFa~s~ 295 (455)
.....+..|+..+... ++.||||++|||++|+|||++++|||||+++
T Consensus 400 ~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 400 LLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred hccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 4333456898776653 4579999999999999999999999999874
No 20
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.3e-36 Score=314.69 Aligned_cols=244 Identities=23% Similarity=0.308 Sum_probs=194.4
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCC---CCCCCCceEEeeCCCCC------ChHHHH
Q 012841 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD---LYTQRADGIMGLGRGRL------SVVDQL 91 (455)
Q Consensus 21 ~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~---~~~~~~dGILGLG~~~~------S~~~qL 91 (455)
..|.|++.|++|+ ++|.+++|+|+|++. +++ ..|+|+..+.+. +....+|||||||++.+ +++.+|
T Consensus 193 ~~~~f~i~Yg~Gs-vsG~~~~DtVtiG~~---~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L 267 (453)
T PTZ00147 193 DGTKVEMNYVSGT-VSGFFSKDLVTIGNL---SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVEL 267 (453)
T ss_pred CCCEEEEEeCCCC-EEEEEEEEEEEECCE---EEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHH
Confidence 4789999999996 699999999999984 455 578988866541 22446899999999875 478899
Q ss_pred HhcCCCC-CceEEeecCCCCCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEc
Q 012841 92 VEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (455)
Q Consensus 92 ~~~g~I~-~~FSl~L~~~~~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiD 169 (455)
.+||+|+ ++||+||++.+...|.|+|||+|+++ .+.+.|.+.....+|.|.++ +.+++... .+..++||
T Consensus 268 ~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~~--------~~~~aIiD 338 (453)
T PTZ00147 268 KNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVSS--------EKANVIVD 338 (453)
T ss_pred HHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEec--------CceeEEEC
Confidence 9999998 78999998765668999999999987 45566655556789999998 57776432 24589999
Q ss_pred cccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEEe
Q 012841 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (455)
Q Consensus 170 SGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~ 249 (455)
|||+++++|++++++|.+++.+... ...+.+...|+. ..+|+++|.| +|..++|+|++|+...
T Consensus 339 SGTsli~lP~~~~~ai~~~l~~~~~------~~~~~y~~~C~~----------~~lP~~~f~f-~g~~~~L~p~~yi~~~ 401 (453)
T PTZ00147 339 SGTSVITVPTEFLNKFVESLDVFKV------PFLPLYVTTCNN----------TKLPTLEFRS-PNKVYTLEPEYYLQPI 401 (453)
T ss_pred CCCchhcCCHHHHHHHHHHhCCeec------CCCCeEEEeCCC----------CCCCeEEEEE-CCEEEEECHHHheecc
Confidence 9999999999999999988843211 112234556742 3789999999 7999999999999865
Q ss_pred cccCCeEEEEEEEcC---CCCeeecceeeeeEEEEEECCCCEEEEeecC
Q 012841 250 MKVSGAYCLGIFQNS---DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 295 (455)
Q Consensus 250 ~~~~~~~Cl~~~~~~---~~~~ILG~~Flr~~yvVFD~en~rIGFa~s~ 295 (455)
.+.....|++.+... .+.||||++|||++|+|||++++|||||+++
T Consensus 402 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 402 EDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 443456898766543 4579999999999999999999999999985
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.6e-35 Score=294.19 Aligned_cols=247 Identities=30% Similarity=0.529 Sum_probs=204.6
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCC-CCCCCCceEEeeCCCC-------CChHHHHH
Q 012841 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGR-------LSVVDQLV 92 (455)
Q Consensus 21 ~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGILGLG~~~-------~S~~~qL~ 92 (455)
..+++.+.|++|+ ++|.+++|+|+|++ +.+.++.||++....+. +.....|||||||++. .+++++|+
T Consensus 56 ~~~~~~~~y~~g~-~~G~~~~D~v~ig~---~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~ 131 (317)
T PF00026_consen 56 QGKPFSISYGDGS-VSGNLVSDTVSIGG---LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLV 131 (317)
T ss_dssp EEEEEEEEETTEE-EEEEEEEEEEEETT---EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHH
T ss_pred ceeeeeeeccCcc-cccccccceEeeee---ccccccceeccccccccccccccccccccccCCcccccccCCcceecch
Confidence 3678999999998 89999999999998 47778999999996553 2345789999999753 37999999
Q ss_pred hcCCCC-CceEEeecCCCCCCceEEECCCCCCC-CceeeecCCCCCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEcc
Q 012841 93 EKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS 170 (455)
Q Consensus 93 ~~g~I~-~~FSl~L~~~~~~~G~I~fGg~d~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiDS 170 (455)
++|+|+ ++||++|++.+...|.|+|||+|+++ ...+.|.+.....+|.+.+++|.++++.... .....++|||
T Consensus 132 ~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~-----~~~~~~~~Dt 206 (317)
T PF00026_consen 132 QQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFS-----SSGQQAILDT 206 (317)
T ss_dssp HTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEE-----EEEEEEEEET
T ss_pred hhccccccccceeeeecccccchheeeccccccccCceeccCccccccccccccccccccccccc-----ccceeeeccc
Confidence 999998 88999999866567999999999987 5566676666889999999999999993322 1234799999
Q ss_pred ccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEEec
Q 012841 171 GTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHM 250 (455)
Q Consensus 171 GTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~~ 250 (455)
|+++++||.+++++|++++...... ..+..+| +.. ..+|.|+|.| ++.++.|+|++|+.+..
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~~~~--------~~~~~~c--------~~~-~~~p~l~f~~-~~~~~~i~~~~~~~~~~ 268 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGSYSD--------GVYSVPC--------NST-DSLPDLTFTF-GGVTFTIPPSDYIFKIE 268 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTEEEC--------SEEEEET--------TGG-GGSEEEEEEE-TTEEEEEEHHHHEEEES
T ss_pred ccccccccchhhHHHHhhhcccccc--------eeEEEec--------ccc-cccceEEEee-CCEEEEecchHhccccc
Confidence 9999999999999999999665431 2344555 322 4789999999 79999999999999987
Q ss_pred ccCCeEEEEEEEc----C-CCCeeecceeeeeEEEEEECCCCEEEEeec
Q 012841 251 KVSGAYCLGIFQN----S-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (455)
Q Consensus 251 ~~~~~~Cl~~~~~----~-~~~~ILG~~Flr~~yvVFD~en~rIGFa~s 294 (455)
......|+..+.. . .+.+|||.+|||++|++||++++|||||++
T Consensus 269 ~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 269 DGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp STTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 6555689988887 2 678999999999999999999999999985
No 22
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.4e-33 Score=278.45 Aligned_cols=212 Identities=18% Similarity=0.293 Sum_probs=170.3
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCC-CCCCCceEEeeCCCCC---------ChHHH
Q 012841 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDL-YTQRADGIMGLGRGRL---------SVVDQ 90 (455)
Q Consensus 21 ~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~-~~~~~dGILGLG~~~~---------S~~~q 90 (455)
+.|+|.+.|++|+.++|.+++|+|+|++ .++.++.|||++.+++.. .....|||||||++.+ +++++
T Consensus 55 ~~~~~~i~Y~~G~~~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~ 131 (278)
T cd06097 55 PGATWSISYGDGSSASGIVYTDTVSIGG---VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFEN 131 (278)
T ss_pred CCcEEEEEeCCCCeEEEEEEEEEEEECC---EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHH
Confidence 4689999999998889999999999998 477899999999887643 3457899999999754 47888
Q ss_pred HHhcCCCCCceEEeecCCCCCCceEEECCCCCCC-CceeeecCCCC-CCceEEEeeeeEEcCEEeeeCCccccCCCcEEE
Q 012841 91 LVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFR-SPYYNIELKELRVAGKPLKVSPRIFDGGHGTVL 168 (455)
Q Consensus 91 L~~~g~I~~~FSl~L~~~~~~~G~I~fGg~d~s~-~~~~~~~~~~~-~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aii 168 (455)
|.+++. ++.||+||.+ ..+|+|+|||+|+.+ .+.+.|.+... ..+|.|++++|.||++.... ..+..++|
T Consensus 132 l~~~~~-~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~-----~~~~~~ii 203 (278)
T cd06097 132 ALSSLD-APLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWS-----RSGFSAIA 203 (278)
T ss_pred HHHhcc-CceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceee-----cCCceEEe
Confidence 998865 7899999986 357999999999876 45566655444 68999999999999984322 23568999
Q ss_pred ccccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEE
Q 012841 169 DSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFR 248 (455)
Q Consensus 169 DSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~ 248 (455)
||||+++++|++++++|.+++.... .......|..+|. . .+|+|+|+|
T Consensus 204 DSGTs~~~lP~~~~~~l~~~l~g~~-----~~~~~~~~~~~C~--------~---~~P~i~f~~---------------- 251 (278)
T cd06097 204 DTGTTLILLPDAIVEAYYSQVPGAY-----YDSEYGGWVFPCD--------T---TLPDLSFAV---------------- 251 (278)
T ss_pred ecCCchhcCCHHHHHHHHHhCcCCc-----ccCCCCEEEEECC--------C---CCCCEEEEE----------------
Confidence 9999999999999999998873111 0111223445553 2 389999998
Q ss_pred ecccCCeEEEEEEEcCCCCeeecceeeeeEEEEEECCCCEEEEee
Q 012841 249 HMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (455)
Q Consensus 249 ~~~~~~~~Cl~~~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFa~ 293 (455)
.||||++|||++|+|||++|+|||||+
T Consensus 252 ------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999995
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.2e-31 Score=261.15 Aligned_cols=217 Identities=32% Similarity=0.578 Sum_probs=177.1
Q ss_pred CCCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCCCCCCceEEeeCCCC------CChHHHHHh
Q 012841 20 RKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGR------LSVVDQLVE 93 (455)
Q Consensus 20 ~~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~~~~~dGILGLG~~~------~S~~~qL~~ 93 (455)
+..|.|++.|++|+ ++|.+++|+|++++. +++++.|||+............+||||||+.. .+++++|++
T Consensus 55 ~~~~~~~~~Y~~g~-~~g~~~~D~v~~~~~---~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~ 130 (283)
T cd05471 55 DTGCTFSITYGDGS-VTGGLGTDTVTIGGL---TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKS 130 (283)
T ss_pred cCCCEEEEEECCCe-EEEEEEEeEEEECCE---EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHH
Confidence 56899999999875 699999999999985 57899999999987755556789999999998 689999999
Q ss_pred cCCCC-CceEEeecCC--CCCCceEEECCCCCCC-CceeeecCCCC--CCceEEEeeeeEEcCEEeeeCCccccCCCcEE
Q 012841 94 KGVIS-DSFSLCYGGM--DVGGGAMVLGGITPPP-DMVFSHSDPFR--SPYYNIELKELRVAGKPLKVSPRIFDGGHGTV 167 (455)
Q Consensus 94 ~g~I~-~~FSl~L~~~--~~~~G~I~fGg~d~s~-~~~~~~~~~~~--~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~ai 167 (455)
+++|. ++||+||.+. ....|.|+|||+|+.+ ...+.|.+... ..+|.|.+++|.|+++.... ......++
T Consensus 131 ~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~----~~~~~~~i 206 (283)
T cd05471 131 QGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVIS----SSGGGGAI 206 (283)
T ss_pred CCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeee----cCCCcEEE
Confidence 99988 8899999975 3468999999999985 44455554444 78999999999999974111 12456899
Q ss_pred EccccceeeecHHHHHHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCCCceE
Q 012841 168 LDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLF 247 (455)
Q Consensus 168 iDSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~ 247 (455)
|||||++++||++++++|.+++.+.... ...|+ ...|.. ...+|+|+|+|
T Consensus 207 iDsGt~~~~lp~~~~~~l~~~~~~~~~~-----------~~~~~---~~~~~~-~~~~p~i~f~f--------------- 256 (283)
T cd05471 207 VDSGTSLIYLPSSVYDAILKALGAAVSS-----------SDGGY---GVDCSP-CDTLPDITFTF--------------- 256 (283)
T ss_pred EecCCCCEeCCHHHHHHHHHHhCCcccc-----------cCCcE---EEeCcc-cCcCCCEEEEE---------------
Confidence 9999999999999999999999765531 11121 112222 25899999999
Q ss_pred EecccCCeEEEEEEEcCCCCeeecceeeeeEEEEEECCCCEEEEee
Q 012841 248 RHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (455)
Q Consensus 248 ~~~~~~~~~Cl~~~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFa~ 293 (455)
.+|||++|||++|++||++++|||||+
T Consensus 257 -------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999985
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.91 E-value=5.8e-24 Score=193.47 Aligned_cols=154 Identities=33% Similarity=0.628 Sum_probs=120.6
Q ss_pred ceEEEeeeeEEcCEEeeeCCccc---cCCCcEEEccccceeeecHHHHHHHHHHHHHhcccccccc-CCCCCcccccccC
Q 012841 138 YYNIELKELRVAGKPLKVSPRIF---DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIR-GPDPNYDDICFSG 213 (455)
Q Consensus 138 ~w~V~l~~I~Vgg~~l~l~~~~f---~~~~~aiiDSGTs~i~LP~~~~~~l~~ai~~~~~~~~~~~-~~~~~~~~~C~~~ 213 (455)
+|.|+|++|+||++.+.+++..| ++...++|||||++++||+++|++|+++|.+++....... .........||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 58999999999999999998877 4567999999999999999999999999999887543110 1223457899987
Q ss_pred CcCCcccccCCCCeEEEEEcCCeEEEeCCCCceEEecccCCeEEEEEEEc---CCCCeeecceeeeeEEEEEECCCCEEE
Q 012841 214 AGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQN---SDSTTLLGGIVVRNTLVTYDRGNDKVG 290 (455)
Q Consensus 214 ~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~~Yi~~~~~~~~~~Cl~~~~~---~~~~~ILG~~Flr~~yvVFD~en~rIG 290 (455)
........+..+|+|+|+|.+|.+++|++++|++.... +.+|+++... .++..|||..+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 65323345579999999998899999999999999874 7999999999 378999999999999999999999999
Q ss_pred Eee
Q 012841 291 FWK 293 (455)
Q Consensus 291 Fa~ 293 (455)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.71 E-value=3.4e-17 Score=149.51 Aligned_cols=115 Identities=36% Similarity=0.706 Sum_probs=93.0
Q ss_pred CCCccccccCCC-CC--------CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCCC--cccccceEEEEEEeccCCC
Q 012841 1 MSNTYQALKCNP-DC--------NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNES--ELVPQRAVFGCENLETGDL 69 (455)
Q Consensus 1 ~SsT~~~v~C~~-~C--------~C~~~~~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~--~~~~~~~~fG~~~~~s~~~ 69 (455)
.|+||++++|++ .| .|.+.+..|.|.+.|+++..+.|.+++|+|+++... .....++.|||+....+.+
T Consensus 38 ~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~ 117 (164)
T PF14543_consen 38 KSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF 117 (164)
T ss_dssp TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS
T ss_pred cCCcccccCCCCcchhhcccccccCCCCcCcccceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC
Confidence 599999999985 35 355567899999999999999999999999997642 1356789999999988644
Q ss_pred CCCCCceEEeeCCCCCChHHHHHhcCCCCCceEEeecC-CCCCCceEEECC
Q 012841 70 YTQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGG-MDVGGGAMVLGG 119 (455)
Q Consensus 70 ~~~~~dGILGLG~~~~S~~~qL~~~g~I~~~FSl~L~~-~~~~~G~I~fGg 119 (455)
. ..+||||||+..+||+.||.++ ..++||+||.+ .....|.|+||+
T Consensus 118 ~--~~~GilGLg~~~~Sl~sQl~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 118 Y--GADGILGLGRGPLSLPSQLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp T--TEEEEEE-SSSTTSHHHHHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred c--CCCcccccCCCcccHHHHHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 3 7899999999999999999988 56899999998 456789999996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=98.41 E-value=9.8e-07 Score=74.33 Aligned_cols=57 Identities=33% Similarity=0.607 Sum_probs=48.3
Q ss_pred CCCceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCC-CCCCceEEee
Q 012841 20 RKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLY-TQRADGIMGL 80 (455)
Q Consensus 20 ~~~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~-~~~~dGILGL 80 (455)
...|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+.+. ....||||||
T Consensus 52 ~~~~~~~~~Y~~g~-~~g~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 52 DNGCTFSITYGTGS-LSGGLSTDTVSIGD---IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCCcEEEEEeCCCe-EEEEEEEEEEEECC---EEECCEEEEEEEecCCccccccccccccCC
Confidence 34799999999986 58999999999988 4678999999999877643 4568999998
No 27
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.53 E-value=0.15 Score=44.15 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=23.7
Q ss_pred CCCeeecceeeeeEEEEEECCCCEEEE
Q 012841 265 DSTTLLGGIVVRNTLVTYDRGNDKVGF 291 (455)
Q Consensus 265 ~~~~ILG~~Flr~~yvVFD~en~rIGF 291 (455)
....|||..||+.+-.+.|..+++|-+
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 456899999999999999999998853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=92.98 E-value=0.86 Score=39.33 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEccccceeeecHHHHHHH
Q 012841 135 RSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (455)
Q Consensus 135 ~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiDSGTs~i~LP~~~~~~l 185 (455)
..++|.+. +.|||+++ .++||||.+.+.+++++.+++
T Consensus 8 ~~g~~~v~---~~InG~~~-----------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-----------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-----------EEEEECCCCcEEcCHHHHHHc
Confidence 44566555 66788855 579999999999999987765
No 29
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=90.77 E-value=0.52 Score=39.78 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.5
Q ss_pred CCCeeecceeeeeEEEEEECCCCEE
Q 012841 265 DSTTLLGGIVVRNTLVTYDRGNDKV 289 (455)
Q Consensus 265 ~~~~ILG~~Flr~~yvVFD~en~rI 289 (455)
.+..+||..||+++-++.|..++++
T Consensus 83 ~~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 83 VDEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CCccEecHHHHhhCCEEEehhhCcC
Confidence 3578999999999999999887653
No 30
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=86.41 E-value=3.5 Score=36.30 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=26.1
Q ss_pred CCCeeecceeeeeEEEEEECCCCEEEEee
Q 012841 265 DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (455)
Q Consensus 265 ~~~~ILG~~Flr~~yvVFD~en~rIGFa~ 293 (455)
+-..|||.++|+.+...-|..+++|-|..
T Consensus 103 ~~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 103 GYDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred ceeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 34599999999999999999999999964
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=84.63 E-value=25 Score=36.19 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=33.3
Q ss_pred EeCCCceEEEEEEEEEEEeCCCCcccccceEEEE----------EEeccC--CCCCCCCceEEeeCCC
Q 012841 28 RYAEMSTSSGVLGVDVISFGNESELVPQRAVFGC----------ENLETG--DLYTQRADGIMGLGRG 83 (455)
Q Consensus 28 ~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~----------~~~~s~--~~~~~~~dGILGLG~~ 83 (455)
.|++|. .-|-+.+..|+|++.....++-|+++- ...... ......++||||+|.-
T Consensus 83 ~F~sgy-tWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 83 QFASGY-TWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hccCcc-cccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 456654 589999999999986433344444432 111110 0113468999999874
No 32
>PF13650 Asp_protease_2: Aspartyl protease
Probab=82.22 E-value=1.8 Score=34.16 Aligned_cols=30 Identities=20% Similarity=0.456 Sum_probs=24.8
Q ss_pred eEEcCEEeeeCCccccCCCcEEEccccceeeecHHHHHHHH
Q 012841 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFK 186 (455)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aiiDSGTs~i~LP~~~~~~l~ 186 (455)
+.|+|+.+ .++||||++.+.+.+++++++-
T Consensus 3 v~vng~~~-----------~~liDTGa~~~~i~~~~~~~l~ 32 (90)
T PF13650_consen 3 VKVNGKPV-----------RFLIDTGASISVISRSLAKKLG 32 (90)
T ss_pred EEECCEEE-----------EEEEcCCCCcEEECHHHHHHcC
Confidence 56778755 5799999999999999987763
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=78.98 E-value=3.1 Score=33.56 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=26.1
Q ss_pred eeEEcCEEeeeCCccccCCCcEEEccccceeeecHHHHHHHH
Q 012841 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFK 186 (455)
Q Consensus 145 ~I~Vgg~~l~l~~~~f~~~~~aiiDSGTs~i~LP~~~~~~l~ 186 (455)
.+.|+|+.+ .++||||++...++++.+.++-
T Consensus 4 ~~~Ing~~i-----------~~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPL-----------KFQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEE-----------EEEEcCCcceEEeCHHHHHHhC
Confidence 367888877 4699999999999999988764
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=78.66 E-value=3.1 Score=32.30 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=25.1
Q ss_pred eEEcCEEeeeCCccccCCCcEEEccccceeeecHHHHHHH
Q 012841 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (455)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aiiDSGTs~i~LP~~~~~~l 185 (455)
+.|+++.+ .+++|||.+..+++++..+.+
T Consensus 13 ~~I~g~~~-----------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-----------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-----------EEEEeCCCcceecCHHHHHHh
Confidence 66788766 589999999999999998887
No 35
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=76.01 E-value=12 Score=34.04 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=19.0
Q ss_pred cEEEccccceeeecHHHHHHHH
Q 012841 165 GTVLDSGTTYAYLPGHAFAAFK 186 (455)
Q Consensus 165 ~aiiDSGTs~i~LP~~~~~~l~ 186 (455)
.++||||++..+.-.++.+.|.
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEeCCCccceeehhhHHhhC
Confidence 6899999999999888877765
No 36
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=73.35 E-value=5.3 Score=31.72 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=24.4
Q ss_pred eeEEcCEEeeeCCccccCCCcEEEccccceeeecHHHHHHHH
Q 012841 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFK 186 (455)
Q Consensus 145 ~I~Vgg~~l~l~~~~f~~~~~aiiDSGTs~i~LP~~~~~~l~ 186 (455)
.+.||++.+ .++||||++.+.++.+..+.+.
T Consensus 6 ~v~i~~~~~-----------~~llDTGa~~s~i~~~~~~~l~ 36 (96)
T cd05483 6 PVTINGQPV-----------RFLLDTGASTTVISEELAERLG 36 (96)
T ss_pred EEEECCEEE-----------EEEEECCCCcEEcCHHHHHHcC
Confidence 366777755 5799999999999998776653
No 37
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=72.36 E-value=2.3 Score=29.18 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=18.3
Q ss_pred CCCchhhHHHHhhhhccccceEE
Q 012841 362 KPNFTELSEFIAHELQVDDIEVH 384 (455)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~ 384 (455)
++..++.|..+|+|++||.++|.
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~ 24 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVK 24 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSS
T ss_pred CcccCHHHHHHHHHcCCCccccc
Confidence 46778999999999999999874
No 38
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=69.19 E-value=6.4 Score=31.49 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=24.8
Q ss_pred eEEcCEEeeeCCccccCCCcEEEccccceeeecHHHHHHH
Q 012841 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (455)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aiiDSGTs~i~LP~~~~~~l 185 (455)
+.|||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-----------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----------EEEEECCCCeEEECHHHhhhc
Confidence 67788866 569999999999999998775
No 39
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=68.76 E-value=15 Score=30.03 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.6
Q ss_pred CCcEEEccccceeeecHHHH
Q 012841 163 GHGTVLDSGTTYAYLPGHAF 182 (455)
Q Consensus 163 ~~~aiiDSGTs~i~LP~~~~ 182 (455)
+...+||||.....+|....
T Consensus 9 ~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CcEEEEeCCCceEeeccccc
Confidence 45789999999999998653
No 40
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=67.49 E-value=10 Score=30.07 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=38.4
Q ss_pred CceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCCCCCCceEEeeCC
Q 012841 22 ECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGR 82 (455)
Q Consensus 22 ~C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~~~~~dGILGLG~ 82 (455)
.....+..++|.........+.+++++. +..++.+........ ..|||||+.+
T Consensus 42 ~~~~~~~~~~G~~~~~~~~~~~i~ig~~---~~~~~~~~v~d~~~~-----~~~gIlG~d~ 94 (96)
T cd05483 42 GGKVTVQTANGRVRAARVRLDSLQIGGI---TLRNVPAVVLPGDAL-----GVDGLLGMDF 94 (96)
T ss_pred CCcEEEEecCCCccceEEEcceEEECCc---EEeccEEEEeCCccc-----CCceEeChHH
Confidence 3456777777877677777999999984 666777776654432 4799999863
No 41
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=65.51 E-value=36 Score=34.78 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=32.1
Q ss_pred EEEEEcCCCCeeecceeeeeEEEEEECCCCEEEEeecCC
Q 012841 258 LGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (455)
Q Consensus 258 l~~~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFa~s~C 296 (455)
+.++...+....||...||++--.-|++++++-++...-
T Consensus 310 ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~t 348 (380)
T KOG0012|consen 310 FTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTET 348 (380)
T ss_pred eEEecCCCcchhhhHHHHHhccceeecccCeEEecCCCc
Confidence 445554477799999999999999999999999986643
No 42
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=64.77 E-value=40 Score=27.51 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.6
Q ss_pred cEEEccccceeeecHHHHHHHH
Q 012841 165 GTVLDSGTTYAYLPGHAFAAFK 186 (455)
Q Consensus 165 ~aiiDSGTs~i~LP~~~~~~l~ 186 (455)
.+.+|||++...+|...++.+-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 6799999999999999887765
No 43
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=62.58 E-value=15 Score=34.73 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=30.2
Q ss_pred CCCceEEEeeeeEEcCEEeeeCCccccCCCcEEEccccceeeecHHHHHHH
Q 012841 135 RSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (455)
Q Consensus 135 ~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiiDSGTs~i~LP~~~~~~l 185 (455)
.+++|.++ .+|||+.+ ..+||||.|...++++....+
T Consensus 102 ~~GHF~a~---~~VNGk~v-----------~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 102 RDGHFEAN---GRVNGKKV-----------DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCCcEEEE---EEECCEEE-----------EEEEecCcceeecCHHHHHHh
Confidence 56777766 67999988 469999999999999886654
No 44
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=61.33 E-value=22 Score=33.55 Aligned_cols=95 Identities=13% Similarity=0.244 Sum_probs=51.7
Q ss_pred cEEEccccceeeecHHHH-HHHHHHHHHhccccccccCCCCCcccccccCCcCCcccccCCCCeEEEEEcCCeEEEeCCC
Q 012841 165 GTVLDSGTTYAYLPGHAF-AAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPE 243 (455)
Q Consensus 165 ~aiiDSGTs~i~LP~~~~-~~l~~ai~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~~g~~i~l~p~ 243 (455)
.++||||.+.-.....+. +.++... ..-..+.+++..- ..++...+.+.+.+ ++..|.||-
T Consensus 22 ~~~vDTGAt~C~~~~~iiP~e~we~~----~~~i~v~~an~~~------------~~i~~~~~~~~i~I-~~~~F~IP~- 83 (201)
T PF02160_consen 22 HCYVDTGATICCASKKIIPEEYWEKS----KKPIKVKGANGSI------------IQINKKAKNGKIQI-ADKIFRIPT- 83 (201)
T ss_pred EEEEeCCCceEEecCCcCCHHHHHhC----CCcEEEEEecCCc------------eEEEEEecCceEEE-ccEEEeccE-
Confidence 689999999877655543 1111111 0001122222110 12223556667776 555555542
Q ss_pred CceEEecccCCeEEEEEEEcCCCCeeecceeeeeEEEEEECCCCEEEEee
Q 012841 244 NYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (455)
Q Consensus 244 ~Yi~~~~~~~~~~Cl~~~~~~~~~~ILG~~Flr~~yvVFD~en~rIGFa~ 293 (455)
++.. ..+-..|||.+|+|.|+=-.+.+ .+|-|-.
T Consensus 84 --iYq~-------------~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 84 --IYQQ-------------ESGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred --EEEe-------------cCCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 1111 12456999999999887766665 5788865
No 45
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=57.64 E-value=10 Score=30.78 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=21.3
Q ss_pred eeEEcCEEeeeCCccccCCCcEEEccccceeeecHHH
Q 012841 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHA 181 (455)
Q Consensus 145 ~I~Vgg~~l~l~~~~f~~~~~aiiDSGTs~i~LP~~~ 181 (455)
.|.++|+.+ .++||||+..+.+++..
T Consensus 9 ~v~i~g~~i-----------~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKI-----------KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEE-----------EEEEETTBSSEEESSGG
T ss_pred EEeECCEEE-----------EEEEecCCCcceecccc
Confidence 466778766 68999999999999865
No 46
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=48.40 E-value=38 Score=30.62 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=38.4
Q ss_pred cceEeeeEEEEEEEeecCCCCCCCchhhHHHHhhhhccccceEEEEEEEec
Q 012841 341 GAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSK 391 (455)
Q Consensus 341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (455)
-+..++-+.+++. .....|.|+...+-++||+.|+++.+||.+---|..
T Consensus 87 ~g~~i~Nvd~tii--~~~PK~~P~~~amr~~ia~~L~i~~~~invKatT~E 135 (159)
T COG0245 87 KGYRIGNVDITII--AQRPKLGPYREAMRANIAELLGIPVDRINVKATTTE 135 (159)
T ss_pred hCcEEEeEEEEEE--EecCcccchHHHHHHHHHHHhCCCchheEEEEeccC
Confidence 4556776554444 489999999999999999999999999877554443
No 47
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.41 E-value=15 Score=31.90 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.3
Q ss_pred cEEEccccc-eeeecHHHHHHHH
Q 012841 165 GTVLDSGTT-YAYLPGHAFAAFK 186 (455)
Q Consensus 165 ~aiiDSGTs-~i~LP~~~~~~l~ 186 (455)
..+||||.+ ++.+|.++++++.
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcC
Confidence 358999998 9999999998876
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=46.09 E-value=24 Score=30.64 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=23.5
Q ss_pred eEEcCEEeeeCCccccCCCcEEEccccceeeecHHHHHHH
Q 012841 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (455)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aiiDSGTs~i~LP~~~~~~l 185 (455)
+.+||+.+ .|+||||+..+.++....+++
T Consensus 29 ~~ing~~v-----------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV-----------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE-----------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE-----------EEEEeCCCCccccCHHHHHHc
Confidence 67899877 689999999999999998874
No 49
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=37.30 E-value=53 Score=29.76 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=37.0
Q ss_pred ceEeeeEEEEEEEeecCCCCCCCchhhHHHHhhhhccccceEEEEEEEec
Q 012841 342 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSK 391 (455)
Q Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (455)
...++- ++..+-.....+.|+..++-+.+|+.|+++.++|.+=--|..
T Consensus 88 g~~i~n--iD~tii~e~PKi~p~~~~m~~~la~~L~~~~~~V~iKatT~E 135 (157)
T PF02542_consen 88 GYRIVN--IDITIIAERPKISPYRPAMRENLAKLLGIPPDRVNIKATTTE 135 (157)
T ss_dssp TEEEEE--EEEEEESSSSTTGGGHHHHHHHHHHHHTS-GGGEEEEEE-TT
T ss_pred CcEEEE--EEEEEEcCCCccHHHHHHHHHHHHHHhCCCcceEEEEEecCC
Confidence 445554 566667788999999999999999999999999876554443
No 50
>PF13650 Asp_protease_2: Aspartyl protease
Probab=35.87 E-value=2e+02 Score=22.02 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=32.5
Q ss_pred ceEEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCCCCCCceEEeeC
Q 012841 23 CIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLG 81 (455)
Q Consensus 23 C~y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~~~~~dGILGLG 81 (455)
....+.-.+|........-+.+++++. +..++.+-... .....|||||+-
T Consensus 40 ~~~~~~~~~g~~~~~~~~~~~i~ig~~---~~~~~~~~v~~------~~~~~~~iLG~d 89 (90)
T PF13650_consen 40 VPISVSGAGGSVTVYRGRVDSITIGGI---TLKNVPFLVVD------LGDPIDGILGMD 89 (90)
T ss_pred eeEEEEeCCCCEEEEEEEEEEEEECCE---EEEeEEEEEEC------CCCCCEEEeCCc
Confidence 345555556665566677788999883 55566665554 123578999974
No 51
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=31.29 E-value=31 Score=27.30 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=17.4
Q ss_pred hhhHHHHhhhhccccceEEEE
Q 012841 366 TELSEFIAHELQVDDIEVHLL 386 (455)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~ 386 (455)
.+|-+|+|+.|+|..++|.|.
T Consensus 43 ~ali~~La~~l~v~ks~i~i~ 63 (77)
T PF02594_consen 43 KALIRFLAKALGVPKSDIEIV 63 (77)
T ss_dssp HHHHHHHHHHCT--TTCEEEC
T ss_pred HHHHHHHHHHhCCCcccEEEE
Confidence 579999999999999999985
No 52
>PF11065 DUF2866: Protein of unknown function (DUF2866); InterPro: IPR021294 This bacterial family of proteins have no known function.
Probab=29.77 E-value=47 Score=25.38 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=15.5
Q ss_pred CCCcceeEEee--eecccccceEE
Q 012841 431 ERFGSHQLVKW--NIEPQIKQYVF 452 (455)
Q Consensus 431 ~~~~~~~~~~~--~~~~~~~~~~~ 452 (455)
...+.|.||+| +.+.+..|-|+
T Consensus 15 PWG~~cRiVEW~i~~~g~~~RrvV 38 (65)
T PF11065_consen 15 PWGRGCRIVEWTIDHDGRISRRVV 38 (65)
T ss_pred CCCCceEEEEEEecCCcceeEEee
Confidence 57889999999 44555555543
No 53
>PF11615 DUF3249: Protein of unknown function (DUF3249); InterPro: IPR021653 This family of proteins represents the gene product of the protein CAF4, the yeast protein YKR036c. This protein contains seven WD40 repeats in its C terminus. The function however is unknown []. ; PDB: 2PQR_D.
Probab=25.23 E-value=39 Score=24.17 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=13.0
Q ss_pred cccchhhHHHHHHHHhhcccCCCCC
Q 012841 408 NYISNTTALNIILRLREHHMQFPER 432 (455)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (455)
+|-..+|...|++.|-|.|.+||.-
T Consensus 13 nyadsattfrilahldeqryplpng 37 (60)
T PF11615_consen 13 NYADSATTFRILAHLDEQRYPLPNG 37 (60)
T ss_dssp ----HHHHHHHHT---TTTS---SS
T ss_pred cccchhhHHHHHHhhcccccCCCCc
Confidence 3445678899999999999999974
No 54
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=22.50 E-value=1.8e+02 Score=24.87 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=32.0
Q ss_pred EEEEeCCCceEEEEEEEEEEEeCCCCcccccceEEEEEEeccCCCCCCCCceEEeeC
Q 012841 25 YERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLG 81 (455)
Q Consensus 25 y~i~Y~dGs~~sG~~~~D~v~ig~~~~~~~~~~~fG~~~~~s~~~~~~~~dGILGLG 81 (455)
..+.=+.|........-|.+.+|+ +...|+++....... ..+|+||+.
T Consensus 55 ~~~~ta~G~~~~~~~~l~~l~iG~---~~~~nv~~~v~~~~~------~~~~LLGm~ 102 (121)
T TIGR02281 55 VTVSTANGQIKAARVTLDRVAIGG---IVVNDVDAMVAEGGA------LSESLLGMS 102 (121)
T ss_pred EEEEeCCCcEEEEEEEeCEEEECC---EEEeCcEEEEeCCCc------CCceEcCHH
Confidence 344445676655666889999999 477788876653221 137999985
No 55
>PRK01530 hypothetical protein; Reviewed
Probab=21.08 E-value=69 Score=27.02 Aligned_cols=39 Identities=13% Similarity=0.386 Sum_probs=29.8
Q ss_pred hhhHHHHhhhhccccceEEEEEEEecCCceEEEEEeeCCCCCc
Q 012841 366 TELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDN 408 (455)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (455)
.+|.+|+|+.|+|.-++|.|+- |..+..+=..+-..+.+
T Consensus 56 ~ali~~LAk~l~v~ks~I~Ivs----G~tSR~K~i~I~g~~~~ 94 (105)
T PRK01530 56 EEIINYLAKEWKLSRSNIEIIK----GHTHSLKTILIKNINED 94 (105)
T ss_pred HHHHHHHHHHhCCChhhEEEEe----cCCCCceEEEEeCCCHH
Confidence 5899999999999999999863 66666665555554444
Done!