Query 012844
Match_columns 455
No_of_seqs 276 out of 1142
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 4E-46 8.6E-51 390.6 28.2 247 198-453 81-338 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 6.9E-43 1.5E-47 362.9 25.4 249 193-451 38-297 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 1.4E-40 3.1E-45 351.8 25.7 233 188-451 109-356 (482)
4 cd05478 pepsin_A Pepsin A, asp 100.0 1.7E-40 3.8E-45 334.4 25.1 225 191-451 2-235 (317)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 1.7E-39 3.6E-44 328.2 25.2 220 197-450 2-234 (325)
6 cd05477 gastricsin Gastricsins 100.0 2.3E-39 5.1E-44 326.2 25.7 221 199-452 1-231 (318)
7 cd05488 Proteinase_A_fungi Fun 100.0 2.8E-39 6E-44 326.2 25.2 224 191-451 2-234 (320)
8 cd05486 Cathespin_E Cathepsin 100.0 3E-39 6.4E-44 325.3 22.9 215 202-450 1-226 (316)
9 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.8E-39 1E-43 325.4 24.1 231 200-448 2-257 (326)
10 cd06097 Aspergillopepsin_like 100.0 8.1E-39 1.8E-43 316.4 23.3 214 202-449 1-225 (278)
11 cd05485 Cathepsin_D_like Cathe 100.0 3.9E-38 8.3E-43 319.3 24.5 219 197-450 7-238 (329)
12 cd06098 phytepsin Phytepsin, a 100.0 5.6E-38 1.2E-42 316.4 25.1 214 197-445 6-233 (317)
13 cd05475 nucellin_like Nucellin 100.0 3.6E-38 7.8E-43 311.4 21.9 196 200-441 1-196 (273)
14 PTZ00147 plasmepsin-1; Provisi 100.0 7.7E-38 1.7E-42 328.7 25.5 223 188-450 128-360 (453)
15 cd05472 cnd41_like Chloroplast 100.0 3E-38 6.4E-43 315.4 21.3 198 201-452 1-201 (299)
16 cd05487 renin_like Renin stimu 100.0 1.5E-37 3.2E-42 314.4 24.5 219 197-451 4-236 (326)
17 cd05471 pepsin_like Pepsin-lik 100.0 1.8E-36 3.9E-41 297.1 25.2 219 202-452 1-232 (283)
18 cd05473 beta_secretase_like Be 100.0 2.3E-36 5E-41 310.2 25.0 220 201-452 3-241 (364)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 3E-36 6.5E-41 316.3 25.6 221 188-450 127-359 (450)
20 cd05489 xylanase_inhibitor_I_l 100.0 1.6E-35 3.5E-40 304.1 22.4 231 208-453 2-260 (362)
21 cd05476 pepsin_A_like_plant Ch 100.0 5.3E-34 1.1E-38 280.3 19.6 184 201-441 1-195 (265)
22 PF00026 Asp: Eukaryotic aspar 100.0 1.1E-33 2.3E-38 282.5 19.0 217 201-451 1-228 (317)
23 cd05474 SAP_like SAPs, pepsin- 100.0 3.3E-33 7.2E-38 277.5 21.6 190 201-452 2-208 (295)
24 PF14543 TAXi_N: Xylanase inhi 100.0 6.6E-29 1.4E-33 228.0 15.7 159 202-377 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 4.7E-22 1E-26 169.2 12.5 108 204-338 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 98.7 7.1E-08 1.5E-12 88.1 7.9 56 398-453 1-60 (161)
27 cd05483 retropepsin_like_bacte 97.9 3.1E-05 6.8E-10 63.3 7.3 93 201-340 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.9 0.042 9E-07 48.0 8.4 96 198-340 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 94.9 0.2 4.3E-06 40.0 8.6 88 205-339 2-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 92.3 1 2.2E-05 39.3 8.9 31 199-231 14-44 (124)
31 PF11925 DUF3443: Protein of u 90.6 2.7 5.9E-05 43.4 11.2 31 201-231 23-58 (370)
32 cd05484 retropepsin_like_LTR_2 89.0 0.43 9.4E-06 39.0 3.3 28 202-231 1-28 (91)
33 TIGR02281 clan_AA_DTGA clan AA 82.7 2.7 5.9E-05 36.5 5.3 35 397-444 10-44 (121)
34 PF13975 gag-asp_proteas: gag- 82.4 2.1 4.6E-05 33.5 4.1 32 198-231 5-36 (72)
35 PF13650 Asp_protease_2: Aspar 81.3 2.2 4.7E-05 33.9 3.9 29 406-444 3-31 (90)
36 PF00077 RVP: Retroviral aspar 78.0 3 6.4E-05 34.3 3.8 27 203-231 7-33 (100)
37 cd05484 retropepsin_like_LTR_2 78.0 3.4 7.4E-05 33.6 4.1 31 405-445 4-34 (91)
38 cd05483 retropepsin_like_bacte 77.2 4.7 0.0001 32.3 4.7 31 404-444 5-35 (96)
39 PF13975 gag-asp_proteas: gag- 74.6 6.4 0.00014 30.8 4.7 30 405-444 12-41 (72)
40 cd06095 RP_RTVL_H_like Retrope 71.0 5.8 0.00013 32.0 3.8 29 406-444 3-31 (86)
41 cd05479 RP_DDI RP_DDI; retrope 61.6 12 0.00026 32.4 4.2 29 406-444 21-49 (124)
42 PF00077 RVP: Retroviral aspar 61.3 8.4 0.00018 31.6 3.0 28 405-442 9-36 (100)
43 cd05482 HIV_retropepsin_like R 57.2 14 0.00029 30.5 3.5 25 205-231 2-26 (87)
44 COG3577 Predicted aspartyl pro 54.7 56 0.0012 31.3 7.5 89 185-314 91-179 (215)
45 PF12384 Peptidase_A2B: Ty3 tr 52.3 18 0.00038 33.5 3.7 29 203-231 34-62 (177)
46 cd05481 retropepsin_like_LTR_1 50.0 18 0.00038 29.9 3.1 22 424-445 12-33 (93)
47 cd06095 RP_RTVL_H_like Retrope 49.5 19 0.00042 29.0 3.2 25 205-231 2-26 (86)
48 COG3577 Predicted aspartyl pro 47.8 33 0.00071 32.9 4.8 35 397-444 104-138 (215)
49 TIGR03698 clan_AA_DTGF clan AA 42.8 19 0.00041 30.5 2.3 21 424-444 18-39 (107)
50 COG5550 Predicted aspartyl pro 41.3 20 0.00042 31.6 2.1 22 424-445 28-50 (125)
51 PF09668 Asp_protease: Asparty 40.9 47 0.001 29.2 4.5 31 404-444 27-57 (124)
52 cd05470 pepsin_retropepsin_lik 28.5 54 0.0012 26.9 2.8 17 424-440 13-29 (109)
53 PF12508 DUF3714: Protein of u 26.6 2.6E+02 0.0056 26.7 7.3 48 397-451 101-149 (200)
54 PF09668 Asp_protease: Asparty 26.2 1E+02 0.0023 27.0 4.2 30 200-231 23-52 (124)
55 TIGR03698 clan_AA_DTGF clan AA 23.1 93 0.002 26.2 3.3 27 204-230 2-33 (107)
56 cd05475 nucellin_like Nucellin 22.4 1.2E+02 0.0026 29.6 4.4 32 200-231 157-194 (273)
57 cd05472 cnd41_like Chloroplast 21.5 1E+02 0.0022 30.4 3.7 44 188-231 134-188 (299)
58 PF07172 GRP: Glycine rich pro 21.1 95 0.0021 26.0 2.8 22 83-104 3-24 (95)
59 PF10577 UPF0560: Uncharacteri 20.6 1.2E+02 0.0027 34.6 4.4 32 12-43 186-219 (807)
60 COG4262 Predicted spermidine s 20.1 62 0.0013 33.9 1.8 17 16-32 368-384 (508)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=4e-46 Score=390.57 Aligned_cols=247 Identities=30% Similarity=0.558 Sum_probs=207.1
Q ss_pred CCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcc---ccCCCccccccccCCCCCCCcC
Q 012844 198 PDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNI---LPYKDSLCMEIQRNHKPGYCET 274 (455)
Q Consensus 198 ~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sst---v~C~~~~C~~~~~~~~~~~C~~ 274 (455)
.+++|+++|.||||||++.|+|||||+++||+|. +|..|..+.++.|||++|+| ++|+++.|...... ..|..
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~---~~c~~ 156 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQ---ASCSD 156 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCCC---CCCCC
Confidence 4679999999999999999999999999999999 99999988889999999987 89999999866532 45766
Q ss_pred CCCceeeeecCCCCeeeeEEEEEEEEEeecCC-CccccceEEEEEEcccccccccccccceeeecCCCCCCchhHhhhcC
Q 012844 275 CQQCDYEIEYADHSSSMGVLARDELHLTIENG-SLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQG 353 (455)
Q Consensus 275 ~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g-~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~S~~~qL~~~g 353 (455)
.+.|.|.+.|+||+.+.|.+++|+|+|+...+ ...++++.|||++...+.+. ...+||||||++..|+++||...
T Consensus 157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~---~~~~GilGLG~~~~Sl~sql~~~- 232 (431)
T PLN03146 157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD---EKGSGIVGLGGGPLSLISQLGSS- 232 (431)
T ss_pred CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc---CCCceeEecCCCCccHHHHhhHh-
Confidence 66799999999998889999999999965322 24688999999998776543 25799999999999999999753
Q ss_pred CcceeEEEEecCC---CCCCceEEeCCcCCCCC-CceEEEccCCCCCccEEEEEeEEEECCeeeecCcccC---CCccEE
Q 012844 354 IIKNVVGHCLTTN---AGGGGYMFLGHDLVPSW-GMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS---QVGWAL 426 (455)
Q Consensus 354 ~I~~vFS~~L~~~---~~~~G~L~fGg~~~~~g-~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~---~~~~aI 426 (455)
+.++||+||.+. ....|.|+||+..++.+ ++.|+||+.+....+|.|.|++|+||++.+.++...+ ..+.+|
T Consensus 233 -~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~i 311 (431)
T PLN03146 233 -IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNII 311 (431)
T ss_pred -hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEE
Confidence 556999999752 23589999999765544 5899999854324789999999999999988755422 235899
Q ss_pred EeccccCeeecHHHHHHHHHHHHhhhh
Q 012844 427 FDTGSSYTYFTKQAYSELIASVSTLIH 453 (455)
Q Consensus 427 iDTGTt~t~LP~~~y~~l~~~i~~~v~ 453 (455)
|||||++++||+++|++|.++|.+++.
T Consensus 312 iDSGTt~t~Lp~~~y~~l~~~~~~~~~ 338 (431)
T PLN03146 312 IDSGTTLTLLPSDFYSELESAVEEAIG 338 (431)
T ss_pred EeCCccceecCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988763
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-43 Score=362.87 Aligned_cols=249 Identities=33% Similarity=0.622 Sum_probs=210.2
Q ss_pred ccCCCCCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCC-CCCCCCCCCCCCCCCcc---ccCCCccccccccCCC
Q 012844 193 RGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCS-SCAKGANPLYKPRMGNI---LPYKDSLCMEIQRNHK 268 (455)
Q Consensus 193 ~g~~~~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~-~C~~~~~~~ydps~Sst---v~C~~~~C~~~~~~~~ 268 (455)
....+.+++|+++|.||||||.|.|+|||||+++||+|. +|. .|....+..|+|++|++ +.|++..|.....
T Consensus 38 ~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~--- 113 (398)
T KOG1339|consen 38 SLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ--- 113 (398)
T ss_pred ccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccc-cccccccccCCCccCccccccccccCCCCcccccccc---
Confidence 333456789999999999999999999999999999998 999 78876555699999976 8999999998754
Q ss_pred CCCCcCCCCceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCCCCchhH
Q 012844 269 PGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQ 348 (455)
Q Consensus 269 ~~~C~~~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~S~~~q 348 (455)
.|..++.|.|.+.|+||+.+.|++++|+|+|+..+ ....+++.|||+..+.+.+.. ..+.|||||||++.++++.|
T Consensus 114 --~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~~g~~~~-~~~~dGIlGLg~~~~S~~~q 189 (398)
T KOG1339|consen 114 --SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNNPGSFGL-FAAFDGILGLGRGSLSVPSQ 189 (398)
T ss_pred --CcccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecCcccccc-ccccceEeecCCCCccceee
Confidence 27777899999999998899999999999996422 266778999999998775221 15689999999999999999
Q ss_pred hhhcCCcceeEEEEecCCCC---CCceEEeCCcCC--CCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCC--
Q 012844 349 LASQGIIKNVVGHCLTTNAG---GGGYMFLGHDLV--PSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQ-- 421 (455)
Q Consensus 349 L~~~g~I~~vFS~~L~~~~~---~~G~L~fGg~~~--~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~-- 421 (455)
+...+...++||+||.+... .+|.|+||+++. +.+.+.|+||..... .+|.+.|.+|+||++. .+......
T Consensus 190 ~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~-~~~~~~~~~~ 267 (398)
T KOG1339|consen 190 LPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGGKR-PIGSSLFCTD 267 (398)
T ss_pred cccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECCcc-CCCcceEecC
Confidence 99988777799999997642 589999999964 567899999998863 5999999999999966 44332221
Q ss_pred CccEEEeccccCeeecHHHHHHHHHHHHhh
Q 012844 422 VGWALFDTGSSYTYFTKQAYSELIASVSTL 451 (455)
Q Consensus 422 ~~~aIiDTGTt~t~LP~~~y~~l~~~i~~~ 451 (455)
..++|+||||++++||+++|++|.++|.+.
T Consensus 268 ~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~ 297 (398)
T KOG1339|consen 268 GGGAIIDSGTSLTYLPTSAYNALREAIGAE 297 (398)
T ss_pred CCCEEEECCcceeeccHHHHHHHHHHHHhh
Confidence 368999999999999999999999999986
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.4e-40 Score=351.78 Aligned_cols=233 Identities=19% Similarity=0.345 Sum_probs=194.0
Q ss_pred eeeeeccCCCCCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCC
Q 012844 188 SIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNH 267 (455)
Q Consensus 188 ~~~Pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~ 267 (455)
...||.+ |.|.+|+++|+||||||+|.|+|||||++|||+|. .|..|.|..++.|||++|+|+.-
T Consensus 109 ~~~~l~n--~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~~~yd~s~SSTy~~------------ 173 (482)
T PTZ00165 109 LQQDLLN--FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPHRKFDPKKSSTYTK------------ 173 (482)
T ss_pred cceeccc--ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCcccccccCCCCccccCCcEe------------
Confidence 5566665 67899999999999999999999999999999999 89988888889999999998321
Q ss_pred CCCCCcCCCCceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEccccc-ccccccccceeeecCCCCC---
Q 012844 268 KPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGL-LLNTLVKTDGILGLSRAKV--- 343 (455)
Q Consensus 268 ~~~~C~~~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~-~~~~~~~~dGILGLg~~~~--- 343 (455)
.|.......+.++||+| .+.|.+++|+|+| |+..++++.|||++..++. +. ....|||||||++..
T Consensus 174 ---~~~~~~~~~~~i~YGsG-s~~G~l~~DtV~i----g~l~i~~q~FG~a~~~s~~~f~--~~~~DGILGLg~~~~s~~ 243 (482)
T PTZ00165 174 ---LKLGDESAETYIQYGTG-ECVLALGKDTVKI----GGLKVKHQSIGLAIEESLHPFA--DLPFDGLVGLGFPDKDFK 243 (482)
T ss_pred ---cCCCCccceEEEEeCCC-cEEEEEEEEEEEE----CCEEEccEEEEEEEeccccccc--cccccceeecCCCccccc
Confidence 01011122577999999 6789999999999 5678999999999987553 32 357899999999753
Q ss_pred ------CchhHhhhcCCc-ceeEEEEecCCCCCCceEEeCCcCC--C--CCCceEEEccCCCCCccEEEEEeEEEECCee
Q 012844 344 ------SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGHDLV--P--SWGMAWVPMLDSPFMELYHTEILKINYGSSP 412 (455)
Q Consensus 344 ------S~~~qL~~~g~I-~~vFS~~L~~~~~~~G~L~fGg~~~--~--~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~ 412 (455)
+++.+|++||+| +++||+||.++...+|+|+|||++. + .+++.|+|+... .||+|.+++|+||++.
T Consensus 244 s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~---~yW~i~l~~i~vgg~~ 320 (482)
T PTZ00165 244 ESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST---DYWEIEVVDILIDGKS 320 (482)
T ss_pred ccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc---ceEEEEeCeEEECCEE
Confidence 567899999999 9999999987666789999999963 2 468999999865 5999999999999987
Q ss_pred eecCcccCCCccEEEeccccCeeecHHHHHHHHHHHHhh
Q 012844 413 LNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASVSTL 451 (455)
Q Consensus 413 l~~~~~~~~~~~aIiDTGTt~t~LP~~~y~~l~~~i~~~ 451 (455)
+.... ....+|+||||+++++|+++|++|.+++++.
T Consensus 321 ~~~~~---~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~ 356 (482)
T PTZ00165 321 LGFCD---RKCKAAIDTGSSLITGPSSVINPLLEKIPLE 356 (482)
T ss_pred eeecC---CceEEEEcCCCccEeCCHHHHHHHHHHcCCc
Confidence 76531 2458999999999999999999999988753
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.7e-40 Score=334.40 Aligned_cols=225 Identities=23% Similarity=0.413 Sum_probs=192.5
Q ss_pred eeccCCCCCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCC
Q 012844 191 PLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPG 270 (455)
Q Consensus 191 Pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~ 270 (455)
||.+ +.+..|+++|.||||||++.|+|||||+++||+|. .|..|.|..++.|+|++|+|+. .
T Consensus 2 ~l~n--~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~~~f~~~~Sst~~----------~----- 63 (317)
T cd05478 2 PLTN--YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNHNRFNPRQSSTYQ----------S----- 63 (317)
T ss_pred cccc--ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCcccccccCcCCCCCCccee----------e-----
Confidence 5554 34789999999999999999999999999999998 8998888888999999998831 1
Q ss_pred CCcCCCCceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCC------CC
Q 012844 271 YCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAK------VS 344 (455)
Q Consensus 271 ~C~~~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~------~S 344 (455)
..|.|++.|++|+ +.|.+++|+|+| |+..++++.|||++...+.+.. ....+||||||++. .+
T Consensus 64 -----~~~~~~~~yg~gs-~~G~~~~D~v~i----g~~~i~~~~fg~~~~~~~~~~~-~~~~dGilGLg~~~~s~~~~~~ 132 (317)
T cd05478 64 -----TGQPLSIQYGTGS-MTGILGYDTVQV----GGISDTNQIFGLSETEPGSFFY-YAPFDGILGLAYPSIASSGATP 132 (317)
T ss_pred -----CCcEEEEEECCce-EEEEEeeeEEEE----CCEEECCEEEEEEEecCccccc-cccccceeeeccchhcccCCCC
Confidence 2578999999995 899999999999 5678899999999877665432 23579999999875 35
Q ss_pred chhHhhhcCCc-ceeEEEEecCCCCCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCC
Q 012844 345 LPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQ 421 (455)
Q Consensus 345 ~~~qL~~~g~I-~~vFS~~L~~~~~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~ 421 (455)
++.+|+++|+| +++||+||.++...+|+|+|||++ ++.|++.|+|+... .+|.|.+++|+||++.+... .
T Consensus 133 ~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~---~~w~v~l~~v~v~g~~~~~~----~ 205 (317)
T cd05478 133 VFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE---TYWQITVDSVTINGQVVACS----G 205 (317)
T ss_pred HHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC---cEEEEEeeEEEECCEEEccC----C
Confidence 88999999999 899999999765568999999995 57899999999764 69999999999999987542 2
Q ss_pred CccEEEeccccCeeecHHHHHHHHHHHHhh
Q 012844 422 VGWALFDTGSSYTYFTKQAYSELIASVSTL 451 (455)
Q Consensus 422 ~~~aIiDTGTt~t~LP~~~y~~l~~~i~~~ 451 (455)
...+||||||+++++|+++|++|++++++.
T Consensus 206 ~~~~iiDTGts~~~lp~~~~~~l~~~~~~~ 235 (317)
T cd05478 206 GCQAIVDTGTSLLVGPSSDIANIQSDIGAS 235 (317)
T ss_pred CCEEEECCCchhhhCCHHHHHHHHHHhCCc
Confidence 348999999999999999999999998753
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.7e-39 Score=328.20 Aligned_cols=220 Identities=23% Similarity=0.386 Sum_probs=183.3
Q ss_pred CCCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCC--CCCCCCCCCCCCCccccCCCccccccccCCCCCCCcC
Q 012844 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSC--AKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCET 274 (455)
Q Consensus 197 ~~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C--~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~ 274 (455)
|.+.+|+++|.||||||+|.|+|||||+++||+|. .|..| .|..++.|+|++|+|+. .
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~~~~~y~~~~SsT~~----------~--------- 61 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACWLHHKYNSSKSSTYV----------K--------- 61 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCccccCcCcCCcccCccee----------e---------
Confidence 45789999999999999999999999999999998 89743 45567899999999832 1
Q ss_pred CCCceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCCC------CchhH
Q 012844 275 CQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV------SLPSQ 348 (455)
Q Consensus 275 ~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~------S~~~q 348 (455)
..|.|.+.|++| .+.|.+++|+|+| |+..++++.|||++.+.+.... ....+||||||++.. +++++
T Consensus 62 -~~~~~~i~Yg~G-~~~G~~~~D~v~~----g~~~~~~~~Fg~~~~~~~~~~~-~~~~dGilGLg~~~~s~~~~~~~~~~ 134 (325)
T cd05490 62 -NGTEFAIQYGSG-SLSGYLSQDTVSI----GGLQVEGQLFGEAVKQPGITFI-AAKFDGILGMAYPRISVDGVTPVFDN 134 (325)
T ss_pred -CCcEEEEEECCc-EEEEEEeeeEEEE----CCEEEcCEEEEEEeeccCCccc-ceeeeEEEecCCccccccCCCCHHHH
Confidence 157899999999 5899999999999 5678899999999887653211 246799999999754 45679
Q ss_pred hhhcCCc-ceeEEEEecCCC--CCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCCCc
Q 012844 349 LASQGII-KNVVGHCLTTNA--GGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG 423 (455)
Q Consensus 349 L~~~g~I-~~vFS~~L~~~~--~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~~~ 423 (455)
|+++|+| +++||+||.++. ..+|+|+|||++ ++.|++.|+|+... .+|.|.|++|+||+...... ...
T Consensus 135 l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~---~~w~v~l~~i~vg~~~~~~~----~~~ 207 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK---AYWQIHMDQVDVGSGLTLCK----GGC 207 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc---eEEEEEeeEEEECCeeeecC----CCC
Confidence 9999999 999999998643 347999999986 56799999999754 59999999999998643221 234
Q ss_pred cEEEeccccCeeecHHHHHHHHHHHHh
Q 012844 424 WALFDTGSSYTYFTKQAYSELIASVST 450 (455)
Q Consensus 424 ~aIiDTGTt~t~LP~~~y~~l~~~i~~ 450 (455)
.+||||||+++++|+++|++|.++|.+
T Consensus 208 ~aiiDSGTt~~~~p~~~~~~l~~~~~~ 234 (325)
T cd05490 208 EAIVDTGTSLITGPVEEVRALQKAIGA 234 (325)
T ss_pred EEEECCCCccccCCHHHHHHHHHHhCC
Confidence 899999999999999999999998864
No 6
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.3e-39 Score=326.19 Aligned_cols=221 Identities=21% Similarity=0.365 Sum_probs=187.4
Q ss_pred CceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCCc
Q 012844 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQC 278 (455)
Q Consensus 199 ~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c 278 (455)
|..|+++|.||||||++.|+|||||+++||+|. .|..|.|..++.|+|++|+|.. . ..|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~~~~~f~~~~SsT~~----------~----------~~~ 59 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACTNHTKFNPSQSSTYS----------T----------NGE 59 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCccccccCCCCcccCCCce----------E----------CCc
Confidence 458999999999999999999999999999998 8998777778899999999831 1 368
Q ss_pred eeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCC------CCchhHhhhc
Q 012844 279 DYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAK------VSLPSQLASQ 352 (455)
Q Consensus 279 ~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~------~S~~~qL~~~ 352 (455)
.|++.|++| .+.|.+++|+|+| |+..++++.|||++...+.... ....+||||||++. .+++++|+++
T Consensus 60 ~~~~~Yg~G-s~~G~~~~D~i~~----g~~~i~~~~Fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~~~~~~~~L~~~ 133 (318)
T cd05477 60 TFSLQYGSG-SLTGIFGYDTVTV----QGIIITNQEFGLSETEPGTNFV-YAQFDGILGLAYPSISAGGATTVMQGMMQQ 133 (318)
T ss_pred EEEEEECCc-EEEEEEEeeEEEE----CCEEEcCEEEEEEEeccccccc-ccceeeEeecCcccccccCCCCHHHHHHhc
Confidence 999999999 5799999999999 5678899999999876543111 24579999999853 5789999999
Q ss_pred CCc-ceeEEEEecCC-CCCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCCCccEEEe
Q 012844 353 GII-KNVVGHCLTTN-AGGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFD 428 (455)
Q Consensus 353 g~I-~~vFS~~L~~~-~~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~~~~aIiD 428 (455)
|.| +++||+||.++ ...+|.|+|||++ ++.+++.|+|+... .+|.|.+++|+||++.+.... ....+|||
T Consensus 134 g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~---~~w~v~l~~i~v~g~~~~~~~---~~~~~iiD 207 (318)
T cd05477 134 NLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE---TYWQIGIQGFQINGQATGWCS---QGCQAIVD 207 (318)
T ss_pred CCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc---eEEEEEeeEEEECCEEecccC---CCceeeEC
Confidence 999 99999999964 2357999999996 57789999999764 699999999999998875422 23479999
Q ss_pred ccccCeeecHHHHHHHHHHHHhhh
Q 012844 429 TGSSYTYFTKQAYSELIASVSTLI 452 (455)
Q Consensus 429 TGTt~t~LP~~~y~~l~~~i~~~v 452 (455)
|||+++++|+++|++|++.+++..
T Consensus 208 SGtt~~~lP~~~~~~l~~~~~~~~ 231 (318)
T cd05477 208 TGTSLLTAPQQVMSTLMQSIGAQQ 231 (318)
T ss_pred CCCccEECCHHHHHHHHHHhCCcc
Confidence 999999999999999999987653
No 7
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.8e-39 Score=326.19 Aligned_cols=224 Identities=27% Similarity=0.438 Sum_probs=189.2
Q ss_pred eeccCCCCCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCC
Q 012844 191 PLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPG 270 (455)
Q Consensus 191 Pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~ 270 (455)
||.+ +.+.+|+++|+||||+|++.|+|||||+++||+|. .|..|.|..++.|++++|+|.. .
T Consensus 2 ~l~n--~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~~~~~y~~~~Sst~~----------~----- 63 (320)
T cd05488 2 PLTN--YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACFLHSKYDSSASSTYK----------A----- 63 (320)
T ss_pred cccc--cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccCCcceECCCCCccee----------e-----
Confidence 4554 45779999999999999999999999999999999 8987666677899999998731 1
Q ss_pred CCcCCCCceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCCCCc-----
Q 012844 271 YCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSL----- 345 (455)
Q Consensus 271 ~C~~~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~S~----- 345 (455)
+.|.|.+.|++| .+.|.+++|+|+| |+..++++.|||++...+.... ....|||||||++..+.
T Consensus 64 -----~~~~~~~~y~~g-~~~G~~~~D~v~i----g~~~~~~~~f~~a~~~~g~~~~-~~~~dGilGLg~~~~s~~~~~~ 132 (320)
T cd05488 64 -----NGTEFKIQYGSG-SLEGFVSQDTLSI----GDLTIKKQDFAEATSEPGLAFA-FGKFDGILGLAYDTISVNKIVP 132 (320)
T ss_pred -----CCCEEEEEECCc-eEEEEEEEeEEEE----CCEEECCEEEEEEecCCCccee-eeeeceEEecCCccccccCCCC
Confidence 368899999999 5899999999999 5677889999999877654221 24679999999987543
Q ss_pred -hhHhhhcCCc-ceeEEEEecCCCCCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCC
Q 012844 346 -PSQLASQGII-KNVVGHCLTTNAGGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQ 421 (455)
Q Consensus 346 -~~qL~~~g~I-~~vFS~~L~~~~~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~ 421 (455)
+.+|+++|+| +++||+||.+....+|.|+|||++ ++.+++.|+|+... .+|.|.+++|+||++.+...
T Consensus 133 ~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~w~v~l~~i~vg~~~~~~~----- 204 (320)
T cd05488 133 PFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK---AYWEVELEKIGLGDEELELE----- 204 (320)
T ss_pred HHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC---cEEEEEeCeEEECCEEeccC-----
Confidence 4578999999 999999999765678999999995 56799999999864 59999999999999877543
Q ss_pred CccEEEeccccCeeecHHHHHHHHHHHHhh
Q 012844 422 VGWALFDTGSSYTYFTKQAYSELIASVSTL 451 (455)
Q Consensus 422 ~~~aIiDTGTt~t~LP~~~y~~l~~~i~~~ 451 (455)
...++|||||+++++|++++++|.+++++.
T Consensus 205 ~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~ 234 (320)
T cd05488 205 NTGAAIDTGTSLIALPSDLAEMLNAEIGAK 234 (320)
T ss_pred CCeEEEcCCcccccCCHHHHHHHHHHhCCc
Confidence 347999999999999999999999988653
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=3e-39 Score=325.30 Aligned_cols=215 Identities=21% Similarity=0.359 Sum_probs=182.6
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCCceee
Q 012844 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYE 281 (455)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~~~ 281 (455)
|+++|+||||||++.|+|||||+++||+|. .|..+.|..++.|+|++|+|+. . ..|.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~~~~~y~~~~SsT~~----------~----------~~~~~~ 59 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACTKHNRFQPSESSTYV----------S----------NGEAFS 59 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccCccceECCCCCcccc----------c----------CCcEEE
Confidence 899999999999999999999999999998 8987666678899999998831 1 368999
Q ss_pred eecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCCCC------chhHhhhcCCc
Q 012844 282 IEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS------LPSQLASQGII 355 (455)
Q Consensus 282 i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~S------~~~qL~~~g~I 355 (455)
+.|++| .+.|.+++|+|+| |+..++++.|||+..+.+.... ....+||||||++..+ ++++|++||+|
T Consensus 60 i~Yg~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~-~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i 133 (316)
T cd05486 60 IQYGTG-SLTGIIGIDQVTV----EGITVQNQQFAESVSEPGSTFQ-DSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLV 133 (316)
T ss_pred EEeCCc-EEEEEeeecEEEE----CCEEEcCEEEEEeeccCccccc-ccccceEeccCchhhccCCCCCHHHHHHhcCCC
Confidence 999999 6899999999999 5678899999998876553221 2468999999997644 57899999999
Q ss_pred -ceeEEEEecCCC--CCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCCCccEEEecc
Q 012844 356 -KNVVGHCLTTNA--GGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTG 430 (455)
Q Consensus 356 -~~vFS~~L~~~~--~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~~~~aIiDTG 430 (455)
+++||+||.++. ..+|+|+|||++ ++.|++.|+|+... .+|.|.+++|+||++.+.... ...+|||||
T Consensus 134 ~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~---~~w~v~l~~i~v~g~~~~~~~----~~~aiiDTG 206 (316)
T cd05486 134 ELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ---GYWQIQLDNIQVGGTVIFCSD----GCQAIVDTG 206 (316)
T ss_pred CCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc---eEEEEEeeEEEEecceEecCC----CCEEEECCC
Confidence 899999998642 357999999995 57799999999764 699999999999998765321 348999999
Q ss_pred ccCeeecHHHHHHHHHHHHh
Q 012844 431 SSYTYFTKQAYSELIASVST 450 (455)
Q Consensus 431 Tt~t~LP~~~y~~l~~~i~~ 450 (455)
|+++++|++++++|.+.+.+
T Consensus 207 Ts~~~lP~~~~~~l~~~~~~ 226 (316)
T cd05486 207 TSLITGPSGDIKQLQNYIGA 226 (316)
T ss_pred cchhhcCHHHHHHHHHHhCC
Confidence 99999999999999988864
No 9
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.8e-39 Score=325.38 Aligned_cols=231 Identities=26% Similarity=0.413 Sum_probs=186.1
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcc---ccCCCccccccccCCCCCCCcCCC
Q 012844 200 GLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNI---LPYKDSLCMEIQRNHKPGYCETCQ 276 (455)
Q Consensus 200 ~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sst---v~C~~~~C~~~~~~~~~~~C~~~~ 276 (455)
++|+++|.||||+|++.|+|||||+++||+|. .|..|.++.++.|+|++|+| +.|.+..|.. ...|.+ +
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~------~~~~~~-~ 73 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY------CLSCLN-N 73 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCCcCCCCCCCcCcccccccccccCCCccccc------cCcCCC-C
Confidence 58999999999999999999999999999999 89999988888999999976 7899988842 134543 5
Q ss_pred CceeeeecCCCCeeeeEEEEEEEEEeecCCC---ccccceEEEEEEcccccccccccccceeeecCCCCCC----chhHh
Q 012844 277 QCDYEIEYADHSSSMGVLARDELHLTIENGS---LTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS----LPSQL 349 (455)
Q Consensus 277 ~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~---~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~S----~~~qL 349 (455)
.|.|.+.|++|+.+.|.+++|+|+|+..... ....++.|||+..+.+.+.. ...+||||||+...+ ...+|
T Consensus 74 ~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GilGLg~~~~~~~~~~~~~l 151 (326)
T cd06096 74 KCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLT--QQATGILGLSLTKNNGLPTPIILL 151 (326)
T ss_pred cCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccc--cccceEEEccCCcccccCchhHHH
Confidence 7999999999988999999999999642110 01235789999988776543 568999999998642 23346
Q ss_pred hhcCCc-c--eeEEEEecCCCCCCceEEeCCcCC--CC----------CCceEEEccCCCCCccEEEEEeEEEECCeeee
Q 012844 350 ASQGII-K--NVVGHCLTTNAGGGGYMFLGHDLV--PS----------WGMAWVPMLDSPFMELYHTEILKINYGSSPLN 414 (455)
Q Consensus 350 ~~~g~I-~--~vFS~~L~~~~~~~G~L~fGg~~~--~~----------g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~ 414 (455)
.+++.+ . ++||+||++ .+|+|+|||++. +. +++.|+|+... .+|.|.+++|+|+++...
T Consensus 152 ~~~~~~~~~~~~FS~~l~~---~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~---~~y~v~l~~i~vg~~~~~ 225 (326)
T cd06096 152 FTKRPKLKKDKIFSICLSE---DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK---YYYYVKLEGLSVYGTTSN 225 (326)
T ss_pred HHhcccccCCceEEEEEcC---CCeEEEECccChhhhcccccccccccCCceEEeccCC---ceEEEEEEEEEEcccccc
Confidence 666665 4 999999994 479999999963 33 78999999865 589999999999998611
Q ss_pred cCcccCCCccEEEeccccCeeecHHHHHHHHHHH
Q 012844 415 LGARNSQVGWALFDTGSSYTYFTKQAYSELIASV 448 (455)
Q Consensus 415 ~~~~~~~~~~aIiDTGTt~t~LP~~~y~~l~~~i 448 (455)
.. ......+||||||++++||+++|++|.+++
T Consensus 226 ~~--~~~~~~aivDSGTs~~~lp~~~~~~l~~~~ 257 (326)
T cd06096 226 SG--NTKGLGMLVDSGSTLSHFPEDLYNKINNFF 257 (326)
T ss_pred ee--cccCCCEEEeCCCCcccCCHHHHHHHHhhc
Confidence 10 112458999999999999999999999876
No 10
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=8.1e-39 Score=316.41 Aligned_cols=214 Identities=21% Similarity=0.335 Sum_probs=182.0
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCCceee
Q 012844 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYE 281 (455)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~~~ 281 (455)
|+++|+||||||++.|+|||||+++||+|. .|..|.+..+..|++++|+|..+. ..|.|.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~~~~~~~~~y~~~~Sst~~~~-------------------~~~~~~ 60 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPAAQQGGHKLYDPSKSSTAKLL-------------------PGATWS 60 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCchhhccCCcCCCccCccceec-------------------CCcEEE
Confidence 899999999999999999999999999999 899999888889999999873221 257899
Q ss_pred eecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCCC---------CchhHhhhc
Q 012844 282 IEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV---------SLPSQLASQ 352 (455)
Q Consensus 282 i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~---------S~~~qL~~~ 352 (455)
+.|++|+.+.|.+++|+|+| |+.+++++.|||++...+.+.. ....+||||||+... +++++|.++
T Consensus 61 i~Y~~G~~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~-~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~ 135 (278)
T cd06097 61 ISYGDGSSASGIVYTDTVSI----GGVEVPNQAIELATAVSASFFS-DTASDGLLGLAFSSINTVQPPKQKTFFENALSS 135 (278)
T ss_pred EEeCCCCeEEEEEEEEEEEE----CCEEECCeEEEEEeecCccccc-cccccceeeeccccccccccCCCCCHHHHHHHh
Confidence 99999988999999999999 5678899999999987653322 357899999998754 456778887
Q ss_pred CCcceeEEEEecCCCCCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCCCccEEEecc
Q 012844 353 GIIKNVVGHCLTTNAGGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTG 430 (455)
Q Consensus 353 g~I~~vFS~~L~~~~~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~~~~aIiDTG 430 (455)
+. +++||+||.+ ..+|+|+|||++ ++.|++.|+|+.... .+|.|.+.+|+||++.... .....+|||||
T Consensus 136 ~~-~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~~--~~w~v~l~~i~v~~~~~~~----~~~~~~iiDSG 206 (278)
T cd06097 136 LD-APLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNSS--GFWQFTSTSYTVGGDAPWS----RSGFSAIADTG 206 (278)
T ss_pred cc-CceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCCC--cEEEEEEeeEEECCcceee----cCCceEEeecC
Confidence 65 8999999985 468999999996 578999999998743 6999999999999974322 12458999999
Q ss_pred ccCeeecHHHHHHHHHHHH
Q 012844 431 SSYTYFTKQAYSELIASVS 449 (455)
Q Consensus 431 Tt~t~LP~~~y~~l~~~i~ 449 (455)
|+++++|++++++|.+++.
T Consensus 207 Ts~~~lP~~~~~~l~~~l~ 225 (278)
T cd06097 207 TTLILLPDAIVEAYYSQVP 225 (278)
T ss_pred CchhcCCHHHHHHHHHhCc
Confidence 9999999999999999984
No 11
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.9e-38 Score=319.28 Aligned_cols=219 Identities=22% Similarity=0.381 Sum_probs=183.6
Q ss_pred CCCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCC--CCCCCCCCCCCCCccccCCCccccccccCCCCCCCcC
Q 012844 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSC--AKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCET 274 (455)
Q Consensus 197 ~~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C--~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~ 274 (455)
+.+.+|+++|+||||+|++.|+|||||+++||+|. .|..| .|..++.|+|++|+|..+
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~Sst~~~------------------- 66 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACLLHNKYDSTKSSTYKK------------------- 66 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCccccCCCeECCcCCCCeEE-------------------
Confidence 56889999999999999999999999999999998 89743 344567899999988321
Q ss_pred CCCceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCCCC------chhH
Q 012844 275 CQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS------LPSQ 348 (455)
Q Consensus 275 ~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~S------~~~q 348 (455)
..|.|.+.|++|+ +.|.+++|+|+| |+..++++.|||+..+.+.... ....+||||||++..+ ++.+
T Consensus 67 -~~~~~~i~Y~~g~-~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~~~p~~~~ 139 (329)
T cd05485 67 -NGTEFAIQYGSGS-LSGFLSTDTVSV----GGVSVKGQTFAEAINEPGLTFV-AAKFDGILGMGYSSISVDGVVPVFYN 139 (329)
T ss_pred -CCeEEEEEECCce-EEEEEecCcEEE----CCEEECCEEEEEEEecCCcccc-ccccceEEEcCCccccccCCCCHHHH
Confidence 2689999999995 899999999999 5667889999999876553111 2468999999998654 4689
Q ss_pred hhhcCCc-ceeEEEEecCCC--CCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCCCc
Q 012844 349 LASQGII-KNVVGHCLTTNA--GGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG 423 (455)
Q Consensus 349 L~~~g~I-~~vFS~~L~~~~--~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~~~ 423 (455)
|++||+| +++||+||.+.. ..+|+|+|||++ ++.|++.|+|+... .+|.|.+++|+++++.+.. ...
T Consensus 140 l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~~~~i~v~~~~~~~-----~~~ 211 (329)
T cd05485 140 MVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK---GYWQFKMDSVSVGEGEFCS-----GGC 211 (329)
T ss_pred HHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc---eEEEEEeeEEEECCeeecC-----CCc
Confidence 9999999 899999998643 257999999996 46789999999754 6999999999999987642 234
Q ss_pred cEEEeccccCeeecHHHHHHHHHHHHh
Q 012844 424 WALFDTGSSYTYFTKQAYSELIASVST 450 (455)
Q Consensus 424 ~aIiDTGTt~t~LP~~~y~~l~~~i~~ 450 (455)
.+||||||+++++|+++|++|.+++.+
T Consensus 212 ~~iiDSGtt~~~lP~~~~~~l~~~~~~ 238 (329)
T cd05485 212 QAIADTGTSLIAGPVDEIEKLNNAIGA 238 (329)
T ss_pred EEEEccCCcceeCCHHHHHHHHHHhCC
Confidence 799999999999999999999998864
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=5.6e-38 Score=316.43 Aligned_cols=214 Identities=25% Similarity=0.388 Sum_probs=178.0
Q ss_pred CCCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCC---CCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCc
Q 012844 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCS---SCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCE 273 (455)
Q Consensus 197 ~~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~---~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~ 273 (455)
+.+.+|+++|+||||||++.|+|||||+++||+|. .|. .|. .++.|+|++|+|+.+
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~--~~~~y~~~~SsT~~~------------------ 64 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACY--FHSKYKSSKSSTYKK------------------ 64 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCcccc--ccCcCCcccCCCccc------------------
Confidence 56889999999999999999999999999999998 896 454 567899999998321
Q ss_pred CCCCceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCCC------Cchh
Q 012844 274 TCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV------SLPS 347 (455)
Q Consensus 274 ~~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~------S~~~ 347 (455)
..+.+.+.|++| .+.|.+++|+|+| |+..++++.|||++...+.... ....+||||||+... +++.
T Consensus 65 --~~~~~~i~Yg~G-~~~G~~~~D~v~i----g~~~v~~~~f~~~~~~~~~~~~-~~~~dGilGLg~~~~s~~~~~~~~~ 136 (317)
T cd06098 65 --NGTSASIQYGTG-SISGFFSQDSVTV----GDLVVKNQVFIEATKEPGLTFL-LAKFDGILGLGFQEISVGKAVPVWY 136 (317)
T ss_pred --CCCEEEEEcCCc-eEEEEEEeeEEEE----CCEEECCEEEEEEEecCCcccc-ccccceeccccccchhhcCCCCHHH
Confidence 145788999999 5799999999999 5678899999999876442111 246899999999754 3567
Q ss_pred HhhhcCCc-ceeEEEEecCCC--CCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCCC
Q 012844 348 QLASQGII-KNVVGHCLTTNA--GGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQV 422 (455)
Q Consensus 348 qL~~~g~I-~~vFS~~L~~~~--~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~~ 422 (455)
+|+++|+| +++||+||.+.. ..+|.|+|||++ ++.|++.|+|+... .+|.|.+++|+||++.+.... ..
T Consensus 137 ~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~---~~w~v~l~~i~v~g~~~~~~~---~~ 210 (317)
T cd06098 137 NMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK---GYWQFEMGDVLIGGKSTGFCA---GG 210 (317)
T ss_pred HHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC---cEEEEEeCeEEECCEEeeecC---CC
Confidence 89999999 899999998642 358999999995 57799999999754 599999999999998876532 23
Q ss_pred ccEEEeccccCeeecHHHHHHHH
Q 012844 423 GWALFDTGSSYTYFTKQAYSELI 445 (455)
Q Consensus 423 ~~aIiDTGTt~t~LP~~~y~~l~ 445 (455)
..+||||||+++++|++++++|.
T Consensus 211 ~~aivDTGTs~~~lP~~~~~~i~ 233 (317)
T cd06098 211 CAAIADSGTSLLAGPTTIVTQIN 233 (317)
T ss_pred cEEEEecCCcceeCCHHHHHhhh
Confidence 47999999999999999888765
No 13
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.6e-38 Score=311.45 Aligned_cols=196 Identities=59% Similarity=1.076 Sum_probs=166.4
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCCce
Q 012844 200 GLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCD 279 (455)
Q Consensus 200 ~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~ 279 (455)
++|+++|.||||||++.|+|||||+++||+|..+|..| .|.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c---------------------------------------~c~ 41 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC---------------------------------------QCD 41 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC---------------------------------------cCc
Confidence 47999999999999999999999999999984256544 356
Q ss_pred eeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCCCCchhHhhhcCCcceeE
Q 012844 280 YEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVV 359 (455)
Q Consensus 280 ~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~S~~~qL~~~g~I~~vF 359 (455)
|++.|+||+.+.|.+++|+|+|+..+++...+++.|||+..+.+.+.......|||||||++..++++||+++++|+++|
T Consensus 42 ~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~F 121 (273)
T cd05475 42 YEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVI 121 (273)
T ss_pred cEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceE
Confidence 88999988899999999999998666666788999999987765432223578999999999999999999999999999
Q ss_pred EEEecCCCCCCceEEeCCcCCCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCCCccEEEeccccCeeecHH
Q 012844 360 GHCLTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQ 439 (455)
Q Consensus 360 S~~L~~~~~~~G~L~fGg~~~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP~~ 439 (455)
|+||++ ..+|.|+||+..++.+++.|+|+..++...+|.|++.+|+||++.+.. ....+||||||++++||++
T Consensus 122 s~~l~~--~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~-----~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 122 GHCLSS--NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGG-----KGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred EEEccC--CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcC-----CCceEEEECCCceEEcCCc
Confidence 999985 457999999877777899999998763336999999999999985431 2358999999999999998
Q ss_pred HH
Q 012844 440 AY 441 (455)
Q Consensus 440 ~y 441 (455)
+|
T Consensus 195 ~y 196 (273)
T cd05475 195 AY 196 (273)
T ss_pred cc
Confidence 87
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=7.7e-38 Score=328.75 Aligned_cols=223 Identities=17% Similarity=0.313 Sum_probs=184.6
Q ss_pred eeeeeccCCCCCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCC
Q 012844 188 SIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNH 267 (455)
Q Consensus 188 ~~~Pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~ 267 (455)
..+||.. +.+.+|+++|+||||||+|.|+|||||+++||+|. .|..|.|..++.|||++|+|+.+
T Consensus 128 ~~v~L~n--~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~~~yd~s~SsT~~~------------ 192 (453)
T PTZ00147 128 DNVELKD--LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETKNLYDSSKSKTYEK------------ 192 (453)
T ss_pred Ceeeccc--cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCCCccCCccCcceEE------------
Confidence 4556654 45779999999999999999999999999999999 89988888889999999998322
Q ss_pred CCCCCcCCCCceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccc-cccccccceeeecCCCCC---
Q 012844 268 KPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLL-LNTLVKTDGILGLSRAKV--- 343 (455)
Q Consensus 268 ~~~~C~~~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~-~~~~~~~dGILGLg~~~~--- 343 (455)
..|.|++.|++| .+.|.+++|+|+| |+.+++ ..|+|+.+..+.- .......|||||||++..
T Consensus 193 --------~~~~f~i~Yg~G-svsG~~~~DtVti----G~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~ 258 (453)
T PTZ00147 193 --------DGTKVEMNYVSG-TVSGFFSKDLVTI----GNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIG 258 (453)
T ss_pred --------CCCEEEEEeCCC-CEEEEEEEEEEEE----CCEEEE-EEEEEEEeccCcccccccccccceecccCCccccc
Confidence 267899999999 5899999999999 456666 5799988765421 001246899999999864
Q ss_pred ---CchhHhhhcCCc-ceeEEEEecCCCCCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCc
Q 012844 344 ---SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGA 417 (455)
Q Consensus 344 ---S~~~qL~~~g~I-~~vFS~~L~~~~~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~ 417 (455)
+++.+|++||+| +++||+||++.....|.|+|||++ ++.|++.|+|+... .+|.|.++ +.+++...
T Consensus 259 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~---~~W~V~l~-~~vg~~~~---- 330 (453)
T PTZ00147 259 SVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD---LYWQVDLD-VHFGNVSS---- 330 (453)
T ss_pred cCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC---ceEEEEEE-EEECCEec----
Confidence 357799999999 899999998765678999999996 56899999999754 69999998 57776432
Q ss_pred ccCCCccEEEeccccCeeecHHHHHHHHHHHHh
Q 012844 418 RNSQVGWALFDTGSSYTYFTKQAYSELIASVST 450 (455)
Q Consensus 418 ~~~~~~~aIiDTGTt~t~LP~~~y~~l~~~i~~ 450 (455)
....+||||||+++++|+++++++.+++.+
T Consensus 331 ---~~~~aIiDSGTsli~lP~~~~~ai~~~l~~ 360 (453)
T PTZ00147 331 ---EKANVIVDSGTSVITVPTEFLNKFVESLDV 360 (453)
T ss_pred ---CceeEEECCCCchhcCCHHHHHHHHHHhCC
Confidence 235899999999999999999999999864
No 15
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=3e-38 Score=315.38 Aligned_cols=198 Identities=35% Similarity=0.624 Sum_probs=169.6
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCCcee
Q 012844 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDY 280 (455)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~~ 280 (455)
+|+++|.||||||++.|+|||||+++||+|. +| |.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c-------------------------------------------~~~ 36 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC-------------------------------------------CLY 36 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC-------------------------------------------Cee
Confidence 5999999999999999999999999999886 54 357
Q ss_pred eeecCCCCeeeeEEEEEEEEEeecCCCc-cccceEEEEEEcccccccccccccceeeecCCCCCCchhHhhhcCCcceeE
Q 012844 281 EIEYADHSSSMGVLARDELHLTIENGSL-TKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVV 359 (455)
Q Consensus 281 ~i~YgdGs~~~G~l~~Dtv~l~~~~g~~-~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~S~~~qL~~~g~I~~vF 359 (455)
.+.|++|+.++|.+++|+|+|+ +. .++++.|||++..++.+ ...+||||||+...+++.||..+ .+++|
T Consensus 37 ~i~Yg~Gs~~~G~~~~D~v~ig----~~~~~~~~~Fg~~~~~~~~~----~~~~GilGLg~~~~s~~~ql~~~--~~~~F 106 (299)
T cd05472 37 QVSYGDGSYTTGDLATDTLTLG----SSDVVPGFAFGCGHDNEGLF----GGAAGLLGLGRGKLSLPSQTASS--YGGVF 106 (299)
T ss_pred eeEeCCCceEEEEEEEEEEEeC----CCCccCCEEEECCccCCCcc----CCCCEEEECCCCcchHHHHhhHh--hcCce
Confidence 8889999888999999999994 44 68899999998876643 25899999999999999998765 46899
Q ss_pred EEEecCCC-CCCceEEeCCcCCCCCCceEEEccCCCC-CccEEEEEeEEEECCeeeecCcccCCCccEEEeccccCeeec
Q 012844 360 GHCLTTNA-GGGGYMFLGHDLVPSWGMAWVPMLDSPF-MELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFT 437 (455)
Q Consensus 360 S~~L~~~~-~~~G~L~fGg~~~~~g~l~~tPl~~~~~-~~~y~v~l~~Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP 437 (455)
|+||.+.. ..+|+|+|||+++..|++.|+|+..++. ..+|.|.|++|+||++.+.+.+.......+||||||++++||
T Consensus 107 S~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp 186 (299)
T cd05472 107 SYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLP 186 (299)
T ss_pred EEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecC
Confidence 99998654 5689999999986688999999987542 368999999999999988764322334589999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 012844 438 KQAYSELIASVSTLI 452 (455)
Q Consensus 438 ~~~y~~l~~~i~~~v 452 (455)
+++|++|.++|.+.+
T Consensus 187 ~~~~~~l~~~l~~~~ 201 (299)
T cd05472 187 PSAYAALRDAFRAAM 201 (299)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998754
No 16
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.5e-37 Score=314.40 Aligned_cols=219 Identities=23% Similarity=0.393 Sum_probs=182.7
Q ss_pred CCCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCC--CCCCCCCCCCCCCccccCCCccccccccCCCCCCCcC
Q 012844 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSC--AKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCET 274 (455)
Q Consensus 197 ~~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C--~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~ 274 (455)
+.+.+|+++|+||||+|++.|+|||||+++||+|. .|..| .|..++.|+|++|+|..+
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~SsT~~~------------------- 63 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACVTHNLYDASDSSTYKE------------------- 63 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhcccCcCCCCCCeeeeE-------------------
Confidence 45789999999999999999999999999999998 89764 456678999999998321
Q ss_pred CCCceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccc-cccccccccceeeecCCCCC------Cchh
Q 012844 275 CQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQG-LLLNTLVKTDGILGLSRAKV------SLPS 347 (455)
Q Consensus 275 ~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g-~~~~~~~~~dGILGLg~~~~------S~~~ 347 (455)
..|.|++.|++| .+.|.+++|+|+|+ +..+ .+.|||++.... .+. ....|||||||++.. +++.
T Consensus 64 -~~~~~~~~Yg~g-~~~G~~~~D~v~~g----~~~~-~~~fg~~~~~~~~~~~--~~~~dGilGLg~~~~s~~~~~~~~~ 134 (326)
T cd05487 64 -NGTEFTIHYASG-TVKGFLSQDIVTVG----GIPV-TQMFGEVTALPAIPFM--LAKFDGVLGMGYPKQAIGGVTPVFD 134 (326)
T ss_pred -CCEEEEEEeCCc-eEEEEEeeeEEEEC----CEEe-eEEEEEEEeccCCccc--eeecceEEecCChhhcccCCCCHHH
Confidence 268999999999 58999999999994 4444 478999987532 222 246899999998753 4678
Q ss_pred HhhhcCCc-ceeEEEEecCCC--CCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCCC
Q 012844 348 QLASQGII-KNVVGHCLTTNA--GGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQV 422 (455)
Q Consensus 348 qL~~~g~I-~~vFS~~L~~~~--~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~~ 422 (455)
+|++||.| +++||+||.++. ...|+|+|||++ ++.|++.|+|+... .+|.|.+++|+|+++.+... ..
T Consensus 135 ~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~---~~w~v~l~~i~vg~~~~~~~----~~ 207 (326)
T cd05487 135 NIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT---GFWQIQMKGVSVGSSTLLCE----DG 207 (326)
T ss_pred HHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC---ceEEEEecEEEECCEEEecC----CC
Confidence 89999999 999999998653 458999999995 57899999999754 59999999999999876542 23
Q ss_pred ccEEEeccccCeeecHHHHHHHHHHHHhh
Q 012844 423 GWALFDTGSSYTYFTKQAYSELIASVSTL 451 (455)
Q Consensus 423 ~~aIiDTGTt~t~LP~~~y~~l~~~i~~~ 451 (455)
..+||||||+++++|.++|+++++++++.
T Consensus 208 ~~aiiDSGts~~~lP~~~~~~l~~~~~~~ 236 (326)
T cd05487 208 CTAVVDTGASFISGPTSSISKLMEALGAK 236 (326)
T ss_pred CEEEECCCccchhCcHHHHHHHHHHhCCc
Confidence 47999999999999999999999998754
No 17
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.8e-36 Score=297.14 Aligned_cols=219 Identities=29% Similarity=0.530 Sum_probs=184.4
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCC--CCCCCCccccCCCccccccccCCCCCCCcCCCCce
Q 012844 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPL--YKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCD 279 (455)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~--ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~ 279 (455)
|+++|.||||+|++.|+|||||+++||+|. .|..|.+..... |++..|++ | ....|.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~~~~~~~~~~~~~~~~s~~-------------------~-~~~~~~ 59 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTSCSCQKHPRFKYDSSKSST-------------------Y-KDTGCT 59 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCccccccCCCCccCccCCce-------------------e-ecCCCE
Confidence 789999999999999999999999999999 899988766554 55555443 1 124899
Q ss_pred eeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCC------CCchhHhhhcC
Q 012844 280 YEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAK------VSLPSQLASQG 353 (455)
Q Consensus 280 ~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~------~S~~~qL~~~g 353 (455)
|++.|++| .+.|.+++|+|+| ++..++++.|||++...+.+. ....+||||||+.. .+++.||.++|
T Consensus 60 ~~~~Y~~g-~~~g~~~~D~v~~----~~~~~~~~~fg~~~~~~~~~~--~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~ 132 (283)
T cd05471 60 FSITYGDG-SVTGGLGTDTVTI----GGLTIPNQTFGCATSESGDFS--SSGFDGILGLGFPSLSVDGVPSFFDQLKSQG 132 (283)
T ss_pred EEEEECCC-eEEEEEEEeEEEE----CCEEEeceEEEEEeccCCccc--ccccceEeecCCcccccccCCCHHHHHHHCC
Confidence 99999998 7899999999999 455688999999998765332 35789999999998 78999999999
Q ss_pred Cc-ceeEEEEecCC--CCCCceEEeCCcCC--CCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCCCccEEEe
Q 012844 354 II-KNVVGHCLTTN--AGGGGYMFLGHDLV--PSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFD 428 (455)
Q Consensus 354 ~I-~~vFS~~L~~~--~~~~G~L~fGg~~~--~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~~~~aIiD 428 (455)
+| +++||+||.+. ....|.|+|||++. +.+++.|+|+... ...+|.+.+.+|.++++.... ......++||
T Consensus 133 ~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~---~~~~~~~iiD 208 (283)
T cd05471 133 LISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN-GPGYWQVPLDGISVGGKSVIS---SSGGGGAIVD 208 (283)
T ss_pred CCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC-CCCEEEEEeCeEEECCceeee---cCCCcEEEEe
Confidence 99 99999999975 35799999999964 5799999999985 127999999999999974111 1234589999
Q ss_pred ccccCeeecHHHHHHHHHHHHhhh
Q 012844 429 TGSSYTYFTKQAYSELIASVSTLI 452 (455)
Q Consensus 429 TGTt~t~LP~~~y~~l~~~i~~~v 452 (455)
|||++++||+++|++|.+++.+..
T Consensus 209 sGt~~~~lp~~~~~~l~~~~~~~~ 232 (283)
T cd05471 209 SGTSLIYLPSSVYDAILKALGAAV 232 (283)
T ss_pred cCCCCEeCCHHHHHHHHHHhCCcc
Confidence 999999999999999999998765
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.3e-36 Score=310.19 Aligned_cols=220 Identities=20% Similarity=0.309 Sum_probs=174.2
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCCcee
Q 012844 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDY 280 (455)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~~ 280 (455)
.|+++|.||||+|+|.|+|||||+++||+|. .|.. .++.|+|++|+|+. . ..|.|
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~~~----~~~~f~~~~SsT~~----------~----------~~~~~ 57 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PHPF----IHTYFHRELSSTYR----------D----------LGKGV 57 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcC-CCcc----ccccCCchhCcCcc----------c----------CCceE
Confidence 6999999999999999999999999999998 6732 35689999999832 1 26899
Q ss_pred eeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCCC--------CchhHhhhc
Q 012844 281 EIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV--------SLPSQLASQ 352 (455)
Q Consensus 281 ~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~--------S~~~qL~~~ 352 (455)
++.|++| .+.|.+++|+|+|+. +......+.|++++...+.+.. ....|||||||++.+ +++++|.+|
T Consensus 58 ~i~Yg~G-s~~G~~~~D~v~ig~--~~~~~~~~~~~~~~~~~~~~~~-~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q 133 (364)
T cd05473 58 TVPYTQG-SWEGELGTDLVSIPK--GPNVTFRANIAAITESENFFLN-GSNWEGILGLAYAELARPDSSVEPFFDSLVKQ 133 (364)
T ss_pred EEEECcc-eEEEEEEEEEEEECC--CCccceEEeeEEEeccccceec-ccccceeeeecccccccCCCCCCCHHHHHHhc
Confidence 9999999 579999999999953 1111112345666655444321 235799999998754 467799999
Q ss_pred CCcceeEEEEecC---------CCCCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCC
Q 012844 353 GIIKNVVGHCLTT---------NAGGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQ 421 (455)
Q Consensus 353 g~I~~vFS~~L~~---------~~~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~ 421 (455)
+.++++||+||.. .....|+|+|||++ ++.|++.|+|+... .+|.|.+.+|+||++.+..+.....
T Consensus 134 ~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~---~~~~v~l~~i~vg~~~~~~~~~~~~ 210 (364)
T cd05473 134 TGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE---WYYEVIILKLEVGGQSLNLDCKEYN 210 (364)
T ss_pred cCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc---eeEEEEEEEEEECCEeccccccccc
Confidence 9888899998742 12347999999995 57899999999864 5899999999999998876443323
Q ss_pred CccEEEeccccCeeecHHHHHHHHHHHHhhh
Q 012844 422 VGWALFDTGSSYTYFTKQAYSELIASVSTLI 452 (455)
Q Consensus 422 ~~~aIiDTGTt~t~LP~~~y~~l~~~i~~~v 452 (455)
...+||||||++++||+++|++|.++|+++.
T Consensus 211 ~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~ 241 (364)
T cd05473 211 YDKAIVDSGTTNLRLPVKVFNAAVDAIKAAS 241 (364)
T ss_pred CccEEEeCCCcceeCCHHHHHHHHHHHHhhc
Confidence 3479999999999999999999999998764
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3e-36 Score=316.31 Aligned_cols=221 Identities=19% Similarity=0.338 Sum_probs=181.1
Q ss_pred eeeeeccCCCCCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCC
Q 012844 188 SIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNH 267 (455)
Q Consensus 188 ~~~Pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~ 267 (455)
..+||.. +.+.+|+++|+||||+|++.|+|||||+++||+|. .|..+.|..++.|+|++|+|+..
T Consensus 127 ~~~~l~d--~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~~~~~yd~s~SsT~~~------------ 191 (450)
T PTZ00013 127 DVIELDD--VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCSIKNLYDSSKSKSYEK------------ 191 (450)
T ss_pred Cceeeec--cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccccCCCccCccCccccc------------
Confidence 3445653 34679999999999999999999999999999999 89877777788999999988321
Q ss_pred CCCCCcCCCCceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEccccc---ccccccccceeeecCCCCC-
Q 012844 268 KPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGL---LLNTLVKTDGILGLSRAKV- 343 (455)
Q Consensus 268 ~~~~C~~~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~---~~~~~~~~dGILGLg~~~~- 343 (455)
..|.|.+.|++| .+.|.+++|+|+| |+.+++ ..|+|+.+..+. +. ....|||||||++..
T Consensus 192 --------~~~~~~i~YG~G-sv~G~~~~Dtv~i----G~~~~~-~~f~~~~~~~~~~~~~~--~~~~dGIlGLg~~~~s 255 (450)
T PTZ00013 192 --------DGTKVDITYGSG-TVKGFFSKDLVTL----GHLSMP-YKFIEVTDTDDLEPIYS--SSEFDGILGLGWKDLS 255 (450)
T ss_pred --------CCcEEEEEECCc-eEEEEEEEEEEEE----CCEEEc-cEEEEEEecccccccee--cccccceecccCCccc
Confidence 267899999999 5899999999999 455555 688988765321 11 246799999999764
Q ss_pred -----CchhHhhhcCCc-ceeEEEEecCCCCCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeec
Q 012844 344 -----SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNL 415 (455)
Q Consensus 344 -----S~~~qL~~~g~I-~~vFS~~L~~~~~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~ 415 (455)
+++.+|++||+| +++||+||++....+|.|+|||++ ++.|++.|+|+... .+|.|.++ +.+|....
T Consensus 256 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~---~yW~I~l~-v~~G~~~~-- 329 (450)
T PTZ00013 256 IGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD---LYWQIDLD-VHFGKQTM-- 329 (450)
T ss_pred cccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC---ceEEEEEE-EEECceec--
Confidence 467899999999 899999999765668999999996 56799999999754 69999998 66764432
Q ss_pred CcccCCCccEEEeccccCeeecHHHHHHHHHHHHh
Q 012844 416 GARNSQVGWALFDTGSSYTYFTKQAYSELIASVST 450 (455)
Q Consensus 416 ~~~~~~~~~aIiDTGTt~t~LP~~~y~~l~~~i~~ 450 (455)
....+||||||+++++|+++++++.+.++.
T Consensus 330 -----~~~~aIlDSGTSli~lP~~~~~~i~~~l~~ 359 (450)
T PTZ00013 330 -----QKANVIVDSGTTTITAPSEFLNKFFANLNV 359 (450)
T ss_pred -----cccceEECCCCccccCCHHHHHHHHHHhCC
Confidence 234799999999999999999999998864
No 20
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.6e-35 Score=304.07 Aligned_cols=231 Identities=24% Similarity=0.323 Sum_probs=181.8
Q ss_pred EcCCCce-EEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCC--------CCCCcCCCCc
Q 012844 208 VGNPPRP-YYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHK--------PGYCETCQQC 278 (455)
Q Consensus 208 IGTPpQ~-~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~--------~~~C~~~~~c 278 (455)
+|||-.+ +.|+|||||+++||+|. +|. ++....++|++..|+....... ...|.+ +.|
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~~~-----------sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-~~C 68 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-AGH-----------SSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-NTC 68 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-CCC-----------cCCCCccCcCChhhccccccCCCccccCCCCCCCCC-CcC
Confidence 5788777 99999999999999998 541 2222458999999986543210 124533 468
Q ss_pred eeeee-cCCCCeeeeEEEEEEEEEeecCCCc----cccceEEEEEEcccccccccccccceeeecCCCCCCchhHhhhcC
Q 012844 279 DYEIE-YADHSSSMGVLARDELHLTIENGSL----TKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQG 353 (455)
Q Consensus 279 ~~~i~-YgdGs~~~G~l~~Dtv~l~~~~g~~----~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~S~~~qL~~~g 353 (455)
.|... |++|+.+.|++++|+|+|+..+|+. +++++.|||+.+...... ....|||||||++.+|++.||..++
T Consensus 69 ~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~--~~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 69 TAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL--PPGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred eeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC--ccccccccccCCCccchHHHhhhhc
Confidence 88765 8899999999999999997655543 688999999987532111 2358999999999999999998876
Q ss_pred CcceeEEEEecCCCCCCceEEeCCcCC--------CCCCceEEEccCCC-CCccEEEEEeEEEECCeeeecCccc-----
Q 012844 354 IIKNVVGHCLTTNAGGGGYMFLGHDLV--------PSWGMAWVPMLDSP-FMELYHTEILKINYGSSPLNLGARN----- 419 (455)
Q Consensus 354 ~I~~vFS~~L~~~~~~~G~L~fGg~~~--------~~g~l~~tPl~~~~-~~~~y~v~l~~Isvgg~~l~~~~~~----- 419 (455)
.++++||+||+++...+|+|+||+.+. ..+++.|+||+.++ ...+|.|+|++|+||++.+.+++..
T Consensus 147 ~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~ 226 (362)
T cd05489 147 GVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDR 226 (362)
T ss_pred CCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccc
Confidence 678899999997655689999999853 23789999999764 2369999999999999988775332
Q ss_pred CCCccEEEeccccCeeecHHHHHHHHHHHHhhhh
Q 012844 420 SQVGWALFDTGSSYTYFTKQAYSELIASVSTLIH 453 (455)
Q Consensus 420 ~~~~~aIiDTGTt~t~LP~~~y~~l~~~i~~~v~ 453 (455)
...+++||||||++++||+++|++|.++|.+++.
T Consensus 227 ~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~ 260 (362)
T cd05489 227 LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATA 260 (362)
T ss_pred cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhc
Confidence 1235899999999999999999999999998763
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.3e-34 Score=280.33 Aligned_cols=184 Identities=38% Similarity=0.707 Sum_probs=156.7
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCCcee
Q 012844 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDY 280 (455)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~~ 280 (455)
+|+++|+||||||++.|+|||||+++||+| |.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----------------------------------------------~~~ 33 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----------------------------------------------CSY 33 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----------------------------------------------Cce
Confidence 599999999999999999999999999964 136
Q ss_pred eeecCCCCeeeeEEEEEEEEEeecCCCc--cccceEEEEEEcccccccccccccceeeecCCCCCCchhHhhhcCCccee
Q 012844 281 EIEYADHSSSMGVLARDELHLTIENGSL--TKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNV 358 (455)
Q Consensus 281 ~i~YgdGs~~~G~l~~Dtv~l~~~~g~~--~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~S~~~qL~~~g~I~~v 358 (455)
.+.|+||+.+.|.+++|+|+|+ +. .++++.|||++...+ +. ....+||||||+...|++.||..++ ++
T Consensus 34 ~~~Y~dg~~~~G~~~~D~v~~g----~~~~~~~~~~Fg~~~~~~~-~~--~~~~~GIlGLg~~~~s~~~ql~~~~---~~ 103 (265)
T cd05476 34 EYSYGDGSSTSGVLATETFTFG----DSSVSVPNVAFGCGTDNEG-GS--FGGADGILGLGRGPLSLVSQLGSTG---NK 103 (265)
T ss_pred EeEeCCCceeeeeEEEEEEEec----CCCCccCCEEEEecccccC-Cc--cCCCCEEEECCCCcccHHHHhhccc---Ce
Confidence 6779999899999999999995 44 688999999998876 32 3578999999999999999999988 89
Q ss_pred EEEEecCC--CCCCceEEeCCcCC-CCCCceEEEccCCC-CCccEEEEEeEEEECCeeeecCcc-----cCCCccEEEec
Q 012844 359 VGHCLTTN--AGGGGYMFLGHDLV-PSWGMAWVPMLDSP-FMELYHTEILKINYGSSPLNLGAR-----NSQVGWALFDT 429 (455)
Q Consensus 359 FS~~L~~~--~~~~G~L~fGg~~~-~~g~l~~tPl~~~~-~~~~y~v~l~~Isvgg~~l~~~~~-----~~~~~~aIiDT 429 (455)
||+||.+. ...+|+|+||+++. +.+++.|+|++.++ ...+|.|.|++|+|+++.+.++.. ......+||||
T Consensus 104 Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DT 183 (265)
T cd05476 104 FSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDS 183 (265)
T ss_pred eEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeC
Confidence 99999974 45689999999964 67999999998752 137999999999999998865322 11235899999
Q ss_pred cccCeeecHHHH
Q 012844 430 GSSYTYFTKQAY 441 (455)
Q Consensus 430 GTt~t~LP~~~y 441 (455)
||++++||+++|
T Consensus 184 GTs~~~lp~~~~ 195 (265)
T cd05476 184 GTTLTYLPDPAY 195 (265)
T ss_pred CCcceEcCcccc
Confidence 999999999887
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.1e-33 Score=282.49 Aligned_cols=217 Identities=29% Similarity=0.519 Sum_probs=181.3
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCC-CCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCCce
Q 012844 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSC-AKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCD 279 (455)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C-~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~ 279 (455)
+|+++|.||||+|++.|++||||+++||++. .|..| .|.....|++.+|++. .. ..+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~~~y~~~~S~t~-------~~-------------~~~~ 59 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASSGFYNPSKSSTF-------SN-------------QGKP 59 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTSC-BBGGGSTTE-------EE-------------EEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-cccccccccccccccccccccc-------cc-------------ceee
Confidence 5999999999999999999999999999998 89887 6667789999988872 11 1567
Q ss_pred eeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCC-------CCCchhHhhhc
Q 012844 280 YEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRA-------KVSLPSQLASQ 352 (455)
Q Consensus 280 ~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~-------~~S~~~qL~~~ 352 (455)
+.+.|++|+ ++|.+++|+|.| |+..+.++.||++....+.... ....+||||||+. ..+++.+|+++
T Consensus 60 ~~~~y~~g~-~~G~~~~D~v~i----g~~~~~~~~f~~~~~~~~~~~~-~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~ 133 (317)
T PF00026_consen 60 FSISYGDGS-VSGNLVSDTVSI----GGLTIPNQTFGLADSYSGDPFS-PIPFDGILGLGFPSLSSSSTYPTFLDQLVQQ 133 (317)
T ss_dssp EEEEETTEE-EEEEEEEEEEEE----TTEEEEEEEEEEEEEEESHHHH-HSSSSEEEE-SSGGGSGGGTS-SHHHHHHHT
T ss_pred eeeeccCcc-cccccccceEee----eeccccccceeccccccccccc-cccccccccccCCcccccccCCcceecchhh
Confidence 999999996 999999999999 6778889999999986443221 3678999999974 25789999999
Q ss_pred CCc-ceeEEEEecCCCCCCceEEeCCcC--CCCCCceEEEccCCCCCccEEEEEeEEEECCeeeecCcccCCCccEEEec
Q 012844 353 GII-KNVVGHCLTTNAGGGGYMFLGHDL--VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDT 429 (455)
Q Consensus 353 g~I-~~vFS~~L~~~~~~~G~L~fGg~~--~~~g~l~~tPl~~~~~~~~y~v~l~~Isvgg~~l~~~~~~~~~~~aIiDT 429 (455)
|+| +++||+||.+.....|.|+|||++ ++.|++.|+|+... .+|.+.+.+|.+++...... ....++|||
T Consensus 134 g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~---~~w~v~~~~i~i~~~~~~~~----~~~~~~~Dt 206 (317)
T PF00026_consen 134 GLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS---GYWSVPLDSISIGGESVFSS----SGQQAILDT 206 (317)
T ss_dssp TSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST---TTTEEEEEEEEETTEEEEEE----EEEEEEEET
T ss_pred ccccccccceeeeecccccchheeeccccccccCceeccCcccc---cccccccccccccccccccc----cceeeeccc
Confidence 999 999999999765678999999995 46799999999944 69999999999999832221 123799999
Q ss_pred cccCeeecHHHHHHHHHHHHhh
Q 012844 430 GSSYTYFTKQAYSELIASVSTL 451 (455)
Q Consensus 430 GTt~t~LP~~~y~~l~~~i~~~ 451 (455)
||++++||.++++.|++.|...
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~ 228 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGS 228 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTE
T ss_pred ccccccccchhhHHHHhhhccc
Confidence 9999999999999999999864
No 23
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.3e-33 Score=277.51 Aligned_cols=190 Identities=25% Similarity=0.366 Sum_probs=163.7
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCCcee
Q 012844 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDY 280 (455)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~~ 280 (455)
.|+++|.||||+|++.|+|||||+++||+ .|
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-------------------------------------------------~~ 32 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-------------------------------------------------DF 32 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-------------------------------------------------ee
Confidence 69999999999999999999999999997 14
Q ss_pred eeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCCCCC-----------CchhHh
Q 012844 281 EIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV-----------SLPSQL 349 (455)
Q Consensus 281 ~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~-----------S~~~qL 349 (455)
++.|++|+.+.|.+++|+|+| |+..++++.|||+++. ...+||||||+... +++.||
T Consensus 33 ~~~Y~~g~~~~G~~~~D~v~~----g~~~~~~~~fg~~~~~--------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L 100 (295)
T cd05474 33 SISYGDGTSASGTWGTDTVSI----GGATVKNLQFAVANST--------SSDVGVLGIGLPGNEATYGTGYTYPNFPIAL 100 (295)
T ss_pred EEEeccCCcEEEEEEEEEEEE----CCeEecceEEEEEecC--------CCCcceeeECCCCCcccccCCCcCCCHHHHH
Confidence 567999889999999999999 4557889999999873 24799999999875 689999
Q ss_pred hhcCCc-ceeEEEEecCCCCCCceEEeCCcC--CCCCCceEEEccCCC---CCccEEEEEeEEEECCeeeecCcccCCCc
Q 012844 350 ASQGII-KNVVGHCLTTNAGGGGYMFLGHDL--VPSWGMAWVPMLDSP---FMELYHTEILKINYGSSPLNLGARNSQVG 423 (455)
Q Consensus 350 ~~~g~I-~~vFS~~L~~~~~~~G~L~fGg~~--~~~g~l~~tPl~~~~---~~~~y~v~l~~Isvgg~~l~~~~~~~~~~ 423 (455)
+++|+| +++||+||.+....+|.|+|||++ ++.+++.|+|+.... ...+|.|.+++|+++++.+..+. .....
T Consensus 101 ~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~-~~~~~ 179 (295)
T cd05474 101 KKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL-LSKNL 179 (295)
T ss_pred HHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc-cCCCc
Confidence 999999 899999999765678999999986 567899999998764 12689999999999998765321 12345
Q ss_pred cEEEeccccCeeecHHHHHHHHHHHHhhh
Q 012844 424 WALFDTGSSYTYFTKQAYSELIASVSTLI 452 (455)
Q Consensus 424 ~aIiDTGTt~t~LP~~~y~~l~~~i~~~v 452 (455)
.+||||||++++||+++|++|.+++.+..
T Consensus 180 ~~iiDSGt~~~~lP~~~~~~l~~~~~~~~ 208 (295)
T cd05474 180 PALLDSGTTLTYLPSDIVDAIAKQLGATY 208 (295)
T ss_pred cEEECCCCccEeCCHHHHHHHHHHhCCEE
Confidence 89999999999999999999999998754
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=6.6e-29 Score=228.03 Aligned_cols=159 Identities=39% Similarity=0.769 Sum_probs=127.0
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcc---ccCCCccccccccCCCCCCCcCCCCc
Q 012844 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNI---LPYKDSLCMEIQRNHKPGYCETCQQC 278 (455)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sst---v~C~~~~C~~~~~~~~~~~C~~~~~c 278 (455)
|+++|.||||+|++.|+|||||+++|++|. .+.|+|.+|+| ++|+++.|...... ....|..++.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~----------~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP----------DPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC----------CcccCCccCCcccccCCCCcchhhcccc-cccCCCCcCcc
Confidence 899999999999999999999999999883 56899999965 99999999977542 11223345799
Q ss_pred eeeeecCCCCeeeeEEEEEEEEEeecCCC-ccccceEEEEEEcccccccccccccceeeecCCCCCCchhHhhhcCCcce
Q 012844 279 DYEIEYADHSSSMGVLARDELHLTIENGS-LTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKN 357 (455)
Q Consensus 279 ~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~-~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~~~~S~~~qL~~~g~I~~ 357 (455)
.|.+.|++|+.+.|.+++|+|+++..+++ ....++.|||+....+.+ ...+||||||+++.||+.||+++ ..+
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~----~~~~GilGLg~~~~Sl~sQl~~~--~~~ 143 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF----YGADGILGLGRGPLSLPSQLASS--SGN 143 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS----TTEEEEEE-SSSTTSHHHHHHHH----S
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC----cCCCcccccCCCcccHHHHHHHh--cCC
Confidence 99999999999999999999999875432 467899999999987654 37899999999999999999888 677
Q ss_pred eEEEEecC-CCCCCceEEeCC
Q 012844 358 VVGHCLTT-NAGGGGYMFLGH 377 (455)
Q Consensus 358 vFS~~L~~-~~~~~G~L~fGg 377 (455)
+||+||.+ .....|.|+||+
T Consensus 144 ~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 144 KFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEEB-S-SSSSEEEEEECS
T ss_pred eEEEECCCCCCCCCEEEEeCc
Confidence 89999998 567899999996
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=4.7e-22 Score=169.19 Aligned_cols=108 Identities=31% Similarity=0.559 Sum_probs=91.2
Q ss_pred EEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCC-CCCCCccccCCCccccccccCCCCCCCcCCCCceeee
Q 012844 204 TYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLY-KPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEI 282 (455)
Q Consensus 204 ~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~y-dps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~~~i 282 (455)
++|.||||||++.|+|||||+++||+|. +|..|.+..+..| +|++|++.. ...|.|.+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~~~~~~~~~~~~~~~sst~~--------------------~~~~~~~~ 59 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQSLAIYSHSSYDDPSASSTYS--------------------DNGCTFSI 59 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCCcccccccccCCcCCCCCCC--------------------CCCcEEEE
Confidence 4799999999999999999999999999 8998887777667 998887621 13789999
Q ss_pred ecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeec
Q 012844 283 EYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGL 338 (455)
Q Consensus 283 ~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGL 338 (455)
.|++| .+.|.++.|+|+| |+..++++.|||++...+.+.. ....+|||||
T Consensus 60 ~Y~~g-~~~g~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGL 109 (109)
T cd05470 60 TYGTG-SLSGGLSTDTVSI----GDIEVVGQAFGCATDEPGATFL-PALFDGILGL 109 (109)
T ss_pred EeCCC-eEEEEEEEEEEEE----CCEEECCEEEEEEEecCCcccc-ccccccccCC
Confidence 99999 6789999999999 5667889999999998775432 3568999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=98.65 E-value=7.1e-08 Score=88.10 Aligned_cols=56 Identities=21% Similarity=0.461 Sum_probs=47.0
Q ss_pred cEEEEEeEEEECCeeeecCcccC----CCccEEEeccccCeeecHHHHHHHHHHHHhhhh
Q 012844 398 LYHTEILKINYGSSPLNLGARNS----QVGWALFDTGSSYTYFTKQAYSELIASVSTLIH 453 (455)
Q Consensus 398 ~y~v~l~~Isvgg~~l~~~~~~~----~~~~aIiDTGTt~t~LP~~~y~~l~~~i~~~v~ 453 (455)
+|.|+|.+|+||++++.+++..+ ..+++||||||++++||+++|++|+++|.+++.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~ 60 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMG 60 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhh
Confidence 58899999999999999887654 456999999999999999999999999999874
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.94 E-value=3.1e-05 Score=63.30 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=64.5
Q ss_pred eEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCCcee
Q 012844 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDY 280 (455)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~~ 280 (455)
.|++++.|| .+++.++||||++.+|+... -...+.. .+. .....
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~-~~~~l~~----~~~-----------------------------~~~~~ 45 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEE-LAERLGL----PLT-----------------------------LGGKV 45 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcCC----Ccc-----------------------------CCCcE
Confidence 689999999 59999999999999999764 1111110 000 12345
Q ss_pred eeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCC
Q 012844 281 EIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSR 340 (455)
Q Consensus 281 ~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~ 340 (455)
.+..++|.........+.|+| |+....++.+........ ..+||||+.+
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~i----g~~~~~~~~~~v~d~~~~-------~~~gIlG~d~ 94 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQI----GGITLRNVPAVVLPGDAL-------GVDGLLGMDF 94 (96)
T ss_pred EEEecCCCccceEEEcceEEE----CCcEEeccEEEEeCCccc-------CCceEeChHH
Confidence 566777766666677889999 566777788777755321 4799999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.94 E-value=0.042 Score=47.97 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=61.1
Q ss_pred CCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCC
Q 012844 198 PDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQ 277 (455)
Q Consensus 198 ~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~ 277 (455)
.+|.|++++.|.. +++.+++|||++.+-+... --.... .++.. ..
T Consensus 8 ~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~-~A~~Lg------l~~~~--------------------------~~ 52 (121)
T TIGR02281 8 GDGHFYATGRVNG--RNVRFLVDTGATSVALNEE-DAQRLG------LDLNR--------------------------LG 52 (121)
T ss_pred CCCeEEEEEEECC--EEEEEEEECCCCcEEcCHH-HHHHcC------CCccc--------------------------CC
Confidence 4789999999964 7999999999999988654 100000 11100 01
Q ss_pred ceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecCC
Q 012844 278 CDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSR 340 (455)
Q Consensus 278 c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg~ 340 (455)
....+.=+.|......+.-|.+.+ |.....++.+.+.... ...+|+||+.+
T Consensus 53 ~~~~~~ta~G~~~~~~~~l~~l~i----G~~~~~nv~~~v~~~~--------~~~~~LLGm~f 103 (121)
T TIGR02281 53 YTVTVSTANGQIKAARVTLDRVAI----GGIVVNDVDAMVAEGG--------ALSESLLGMSF 103 (121)
T ss_pred ceEEEEeCCCcEEEEEEEeCEEEE----CCEEEeCcEEEEeCCC--------cCCceEcCHHH
Confidence 123333455644445567888999 6778888887776432 12479999753
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.91 E-value=0.2 Score=40.04 Aligned_cols=88 Identities=25% Similarity=0.277 Sum_probs=51.7
Q ss_pred EEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccccCCCCCCCcCCCCceeeeec
Q 012844 205 YMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEY 284 (455)
Q Consensus 205 ~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~~~~~~~~C~~~~~c~~~i~Y 284 (455)
++.|+- +++.+++|||++.+.+... -+.... ..+.. ......+.-
T Consensus 2 ~v~vng--~~~~~liDTGa~~~~i~~~-~~~~l~------~~~~~--------------------------~~~~~~~~~ 46 (90)
T PF13650_consen 2 PVKVNG--KPVRFLIDTGASISVISRS-LAKKLG------LKPRP--------------------------KSVPISVSG 46 (90)
T ss_pred EEEECC--EEEEEEEcCCCCcEEECHH-HHHHcC------CCCcC--------------------------CceeEEEEe
Confidence 566764 7999999999998888654 111111 00000 011233333
Q ss_pred CCCCeeeeEEEEEEEEEeecCCCccccceEEEEEEcccccccccccccceeeecC
Q 012844 285 ADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLS 339 (455)
Q Consensus 285 gdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGILGLg 339 (455)
.+|........-+.+++ |+....++.|-+... ....+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~i----g~~~~~~~~~~v~~~--------~~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITI----GGITLKNVPFLVVDL--------GDPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEE----CCEEEEeEEEEEECC--------CCCCEEEeCCc
Confidence 44544445556668888 566666777766651 24679999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.27 E-value=1 Score=39.29 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=26.6
Q ss_pred CceEEEEEEEcCCCceEEEEEeCCCCceeEecC
Q 012844 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (455)
Q Consensus 199 ~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~ 231 (455)
...+++++.|+. +++.+++|||++.+++...
T Consensus 14 ~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEING--VPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEECC--EEEEEEEeCCCceEEeCHH
Confidence 447899999975 7899999999999999764
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=90.65 E-value=2.7 Score=43.38 Aligned_cols=31 Identities=23% Similarity=0.119 Sum_probs=22.4
Q ss_pred eEEEEEEEcCCC----ceE-EEEEeCCCCceeEecC
Q 012844 201 LYFTYMIVGNPP----RPY-YLDMDTGSDLTWIQCD 231 (455)
Q Consensus 201 ~Y~~~I~IGTPp----Q~~-~v~~DTGSs~lWV~~~ 231 (455)
.-++.|+|=.|. |.+ +|++||||.=|-|...
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~s 58 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFAS 58 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHh
Confidence 456777774443 444 8999999999888765
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=88.99 E-value=0.43 Score=38.97 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=24.6
Q ss_pred EEEEEEEcCCCceEEEEEeCCCCceeEecC
Q 012844 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (455)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~ 231 (455)
|++++.|+. +++.+++||||+.+++...
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHH
Confidence 578899975 8999999999999999765
No 33
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=82.72 E-value=2.7 Score=36.50 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=27.5
Q ss_pred ccEEEEEeEEEECCeeeecCcccCCCccEEEeccccCeeecHHHHHHH
Q 012844 397 ELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSEL 444 (455)
Q Consensus 397 ~~y~v~l~~Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP~~~y~~l 444 (455)
++|.+. +.|||+.+ .++||||++.+.++.++.+.+
T Consensus 10 g~~~v~---~~InG~~~----------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNV----------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEE----------EEEEECCCCcEEcCHHHHHHc
Confidence 455444 45888754 479999999999999998876
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.42 E-value=2.1 Score=33.53 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=28.3
Q ss_pred CCceEEEEEEEcCCCceEEEEEeCCCCceeEecC
Q 012844 198 PDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (455)
Q Consensus 198 ~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~ 231 (455)
..+.+++++.||. +.+.+++|||++...|+..
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISES 36 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHH
Confidence 3578999999997 9999999999999988765
No 35
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.27 E-value=2.2 Score=33.88 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=24.4
Q ss_pred EEECCeeeecCcccCCCccEEEeccccCeeecHHHHHHH
Q 012844 406 INYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSEL 444 (455)
Q Consensus 406 Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP~~~y~~l 444 (455)
+.|||+.+ .++||||++.+.+.+++++.+
T Consensus 3 v~vng~~~----------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV----------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE----------EEEEcCCCCcEEECHHHHHHc
Confidence 56787755 479999999999999998875
No 36
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=77.97 E-value=3 Score=34.30 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=22.1
Q ss_pred EEEEEEcCCCceEEEEEeCCCCceeEecC
Q 012844 203 FTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (455)
Q Consensus 203 ~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~ 231 (455)
+.+|.|.. +++.+++||||+.+-|+..
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 45677765 7999999999999988765
No 37
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=77.97 E-value=3.4 Score=33.58 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=25.9
Q ss_pred EEEECCeeeecCcccCCCccEEEeccccCeeecHHHHHHHH
Q 012844 405 KINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELI 445 (455)
Q Consensus 405 ~Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP~~~y~~l~ 445 (455)
.+.|||+.+. +.+|||++.+.++++.+..+-
T Consensus 4 ~~~Ing~~i~----------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPLK----------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEEE----------EEEcCCcceEEeCHHHHHHhC
Confidence 4678888764 699999999999999998653
No 38
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.16 E-value=4.7 Score=32.25 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=24.7
Q ss_pred eEEEECCeeeecCcccCCCccEEEeccccCeeecHHHHHHH
Q 012844 404 LKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSEL 444 (455)
Q Consensus 404 ~~Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP~~~y~~l 444 (455)
..+.+|++.+ .++||||++.+.++.+..+.+
T Consensus 5 v~v~i~~~~~----------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 5 VPVTINGQPV----------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCEEE----------EEEEECCCCcEEcCHHHHHHc
Confidence 3456777655 479999999999999887765
No 39
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=74.62 E-value=6.4 Score=30.80 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=24.9
Q ss_pred EEEECCeeeecCcccCCCccEEEeccccCeeecHHHHHHH
Q 012844 405 KINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSEL 444 (455)
Q Consensus 405 ~Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP~~~y~~l 444 (455)
.+.|+|+.+ .+++|||++-.+++.++.+.+
T Consensus 12 ~~~I~g~~~----------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQV----------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEE----------EEEEeCCCcceecCHHHHHHh
Confidence 356777655 479999999999999999876
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=71.02 E-value=5.8 Score=32.04 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=24.4
Q ss_pred EEECCeeeecCcccCCCccEEEeccccCeeecHHHHHHH
Q 012844 406 INYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSEL 444 (455)
Q Consensus 406 Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP~~~y~~l 444 (455)
+.+||+.+ .+++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~----------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI----------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE----------EEEEECCCCeEEECHHHhhhc
Confidence 56788766 469999999999999998764
No 41
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=61.60 E-value=12 Score=32.43 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=23.5
Q ss_pred EEECCeeeecCcccCCCccEEEeccccCeeecHHHHHHH
Q 012844 406 INYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSEL 444 (455)
Q Consensus 406 Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP~~~y~~l 444 (455)
+.+||..+ .++||||++.+.++.+..+.+
T Consensus 21 ~~Ing~~~----------~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPV----------KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEE----------EEEEeCCCceEEeCHHHHHHc
Confidence 45777654 479999999999999998763
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=61.29 E-value=8.4 Score=31.55 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=22.3
Q ss_pred EEEECCeeeecCcccCCCccEEEeccccCeeecHHHHH
Q 012844 405 KINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYS 442 (455)
Q Consensus 405 ~Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP~~~y~ 442 (455)
.|.++|+.+ .++||||+..++++++.+.
T Consensus 9 ~v~i~g~~i----------~~LlDTGA~vsiI~~~~~~ 36 (100)
T PF00077_consen 9 TVKINGKKI----------KALLDTGADVSIISEKDWK 36 (100)
T ss_dssp EEEETTEEE----------EEEEETTBSSEEESSGGSS
T ss_pred EEeECCEEE----------EEEEecCCCcceecccccc
Confidence 566777755 4799999999999987653
No 43
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=57.24 E-value=14 Score=30.47 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.6
Q ss_pred EEEEcCCCceEEEEEeCCCCceeEecC
Q 012844 205 YMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (455)
Q Consensus 205 ~I~IGTPpQ~~~v~~DTGSs~lWV~~~ 231 (455)
++.|+ .|.+.+++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 49999999999999988754
No 44
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=54.66 E-value=56 Score=31.34 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=58.6
Q ss_pred CCceeeeeccCCCCCceEEEEEEEcCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCccccCCCccccccc
Q 012844 185 DSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQ 264 (455)
Q Consensus 185 ~s~~~~Pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~~~C~~C~~~~~~~ydps~Sstv~C~~~~C~~~~ 264 (455)
.+..++-|..+ .+|.|.++..|- .|++..++|||-+..-++.. .. ..--|+.+.
T Consensus 91 ~g~~~v~Lak~--~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~-dA------~RlGid~~~--------------- 144 (215)
T COG3577 91 DGYQEVSLAKS--RDGHFEANGRVN--GKKVDFLVDTGATSVALNEE-DA------RRLGIDLNS--------------- 144 (215)
T ss_pred CCceEEEEEec--CCCcEEEEEEEC--CEEEEEEEecCcceeecCHH-HH------HHhCCCccc---------------
Confidence 34445666654 488999999994 59999999999998887654 11 011233332
Q ss_pred cCCCCCCCcCCCCceeeeecCCCCeeeeEEEEEEEEEeecCCCccccceE
Q 012844 265 RNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVV 314 (455)
Q Consensus 265 ~~~~~~~C~~~~~c~~~i~YgdGs~~~G~l~~Dtv~l~~~~g~~~~~~~~ 314 (455)
.+.++.+.-++|..-...+--|.|.| |+....++.
T Consensus 145 -----------l~y~~~v~TANG~~~AA~V~Ld~v~I----G~I~~~nV~ 179 (215)
T COG3577 145 -----------LDYTITVSTANGRARAAPVTLDRVQI----GGIRVKNVD 179 (215)
T ss_pred -----------cCCceEEEccCCccccceEEeeeEEE----ccEEEcCch
Confidence 13456666678855556677899999 555555554
No 45
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=52.29 E-value=18 Score=33.49 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=22.2
Q ss_pred EEEEEEcCCCceEEEEEeCCCCceeEecC
Q 012844 203 FTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (455)
Q Consensus 203 ~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~ 231 (455)
..++.++.-..+++++|||||....|...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34445555558999999999999988765
No 46
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=49.99 E-value=18 Score=29.92 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.0
Q ss_pred cEEEeccccCeeecHHHHHHHH
Q 012844 424 WALFDTGSSYTYFTKQAYSELI 445 (455)
Q Consensus 424 ~aIiDTGTt~t~LP~~~y~~l~ 445 (455)
.+.+|||++...+|..+|+.+.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 5799999999999999998875
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=49.47 E-value=19 Score=28.96 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=19.9
Q ss_pred EEEEcCCCceEEEEEeCCCCceeEecC
Q 012844 205 YMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (455)
Q Consensus 205 ~I~IGTPpQ~~~v~~DTGSs~lWV~~~ 231 (455)
.+.|. .+++.+++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 34553 38999999999999999765
No 48
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=47.85 E-value=33 Score=32.87 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=28.2
Q ss_pred ccEEEEEeEEEECCeeeecCcccCCCccEEEeccccCeeecHHHHHHH
Q 012844 397 ELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSEL 444 (455)
Q Consensus 397 ~~y~v~l~~Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP~~~y~~l 444 (455)
++|.++ ..|||+.+. .++|||.|.+.++++....+
T Consensus 104 GHF~a~---~~VNGk~v~----------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 104 GHFEAN---GRVNGKKVD----------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CcEEEE---EEECCEEEE----------EEEecCcceeecCHHHHHHh
Confidence 666554 468998875 59999999999999987664
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=42.81 E-value=19 Score=30.50 Aligned_cols=21 Identities=33% Similarity=0.265 Sum_probs=18.6
Q ss_pred cEEEeccccCee-ecHHHHHHH
Q 012844 424 WALFDTGSSYTY-FTKQAYSEL 444 (455)
Q Consensus 424 ~aIiDTGTt~t~-LP~~~y~~l 444 (455)
.++||||.+... +|.++++.+
T Consensus 18 ~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 18 RALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEECCCCeEEecCHHHHHHc
Confidence 789999999886 999998875
No 50
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.34 E-value=20 Score=31.56 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.2
Q ss_pred cEEEecccc-CeeecHHHHHHHH
Q 012844 424 WALFDTGSS-YTYFTKQAYSELI 445 (455)
Q Consensus 424 ~aIiDTGTt-~t~LP~~~y~~l~ 445 (455)
..+||||-+ ++.+|.++++++.
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcC
Confidence 448999999 9999999999763
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=40.92 E-value=47 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=23.9
Q ss_pred eEEEECCeeeecCcccCCCccEEEeccccCeeecHHHHHHH
Q 012844 404 LKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSEL 444 (455)
Q Consensus 404 ~~Isvgg~~l~~~~~~~~~~~aIiDTGTt~t~LP~~~y~~l 444 (455)
..+++||+.+ .|+||||+-.+.++.+..+.+
T Consensus 27 I~~~ing~~v----------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 27 INCKINGVPV----------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEEETTEEE----------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEEECCEEE----------EEEEeCCCCccccCHHHHHHc
Confidence 3567888876 489999999999999998873
No 52
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=28.55 E-value=54 Score=26.88 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.7
Q ss_pred cEEEeccccCeeecHHH
Q 012844 424 WALFDTGSSYTYFTKQA 440 (455)
Q Consensus 424 ~aIiDTGTt~t~LP~~~ 440 (455)
.++||||++.++++.+-
T Consensus 13 ~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 13 NVLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEEEeCCCCCEEEeCCC
Confidence 68999999999998753
No 53
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=26.62 E-value=2.6e+02 Score=26.69 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=36.2
Q ss_pred ccEEEEEeEEEECCeeeecCcccCCCccEEEec-cccCeeecHHHHHHHHHHHHhh
Q 012844 397 ELYHTEILKINYGSSPLNLGARNSQVGWALFDT-GSSYTYFTKQAYSELIASVSTL 451 (455)
Q Consensus 397 ~~y~v~l~~Isvgg~~l~~~~~~~~~~~aIiDT-GTt~t~LP~~~y~~l~~~i~~~ 451 (455)
..-.+.+.+|.++|..+++. ..+.|+ |---+|+|........+.+.+.
T Consensus 101 ~Rl~i~I~SI~~~~~IipV~-------L~vYD~DG~eGlyVP~s~~~~a~ke~~~~ 149 (200)
T PF12508_consen 101 QRLLITITSIEYGGNIIPVE-------LSVYDLDGQEGLYVPNSAEREAAKEMAAN 149 (200)
T ss_pred cEEEEEEEEEEECCEEEEEE-------EEEECCCCCcccccCCchHHHHHHHHHHH
Confidence 47889999999999988763 345555 7778889988877776666543
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=26.18 E-value=1e+02 Score=27.03 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=22.1
Q ss_pred ceEEEEEEEcCCCceEEEEEeCCCCceeEecC
Q 012844 200 GLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (455)
Q Consensus 200 ~~Y~~~I~IGTPpQ~~~v~~DTGSs~lWV~~~ 231 (455)
..+|++++|+. +++.+++|||...+-+...
T Consensus 23 ~mLyI~~~ing--~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 23 SMLYINCKING--VPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp ---EEEEEETT--EEEEEEEETT-SS-EEEHH
T ss_pred ceEEEEEEECC--EEEEEEEeCCCCccccCHH
Confidence 36899999976 8999999999999888754
No 55
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=23.11 E-value=93 Score=26.24 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=19.7
Q ss_pred EEEEEcCCCc----eEEEEEeCCCCcee-Eec
Q 012844 204 TYMIVGNPPR----PYYLDMDTGSDLTW-IQC 230 (455)
Q Consensus 204 ~~I~IGTPpQ----~~~v~~DTGSs~lW-V~~ 230 (455)
++|.|..|.| ++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 5778888733 68899999988654 443
No 56
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=22.45 E-value=1.2e+02 Score=29.61 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=23.0
Q ss_pred ceEEEE---EEEcC---CCceEEEEEeCCCCceeEecC
Q 012844 200 GLYFTY---MIVGN---PPRPYYLDMDTGSDLTWIQCD 231 (455)
Q Consensus 200 ~~Y~~~---I~IGT---PpQ~~~v~~DTGSs~lWV~~~ 231 (455)
..|.++ |+||. +.....++||||++.+.++..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 356554 57763 223467999999999999875
No 57
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=21.48 E-value=1e+02 Score=30.45 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=27.1
Q ss_pred eeeeeccCCCCCceEEEE---EEEcCCC--------ceEEEEEeCCCCceeEecC
Q 012844 188 SIFPLRGNIYPDGLYFTY---MIVGNPP--------RPYYLDMDTGSDLTWIQCD 231 (455)
Q Consensus 188 ~~~Pl~g~~~~~~~Y~~~---I~IGTPp--------Q~~~v~~DTGSs~lWV~~~ 231 (455)
.-.|+..+......|.++ |+||.-. ....++||||+++++++..
T Consensus 134 ~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 134 SFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred eECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 445655432123456655 5776421 2336899999999999864
No 58
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.09 E-value=95 Score=25.96 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHhccccc
Q 012844 83 RKLFLFLAISIFALILYGSVFS 104 (455)
Q Consensus 83 ~~~~~~~~~~~~a~~~~~~~~~ 104 (455)
.|.++||++.+-+|++..|-.+
T Consensus 3 SK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 3666666654445555554333
No 59
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.61 E-value=1.2e+02 Score=34.62 Aligned_cols=32 Identities=28% Similarity=0.627 Sum_probs=25.5
Q ss_pred ceeeEEEEEcCCCCCCC--CCceeEEEeecCCCC
Q 012844 12 QLTGVVIITLPPPNNPS--LGKTITAYTLTDNSP 43 (455)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 43 (455)
+|.+=|-|+||=|.++. -|..|.|+.|..+-+
T Consensus 186 qVsgPI~iSlPLp~~s~l~~gd~IPAW~FD~ktG 219 (807)
T PF10577_consen 186 QVSGPIQISLPLPSDSRLRHGDSIPAWRFDEKTG 219 (807)
T ss_pred eecCCeEEEeeCCCCCCCCCCCeeeeeEecCCcc
Confidence 45566788888888776 599999999988766
No 60
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=20.15 E-value=62 Score=33.92 Aligned_cols=17 Identities=53% Similarity=1.065 Sum_probs=15.6
Q ss_pred EEEEEcCCCCCCCCCce
Q 012844 16 VVIITLPPPNNPSLGKT 32 (455)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (455)
+||+.||-|+|||.||-
T Consensus 368 ~vIVDl~DP~tps~~rl 384 (508)
T COG4262 368 VVIVDLPDPSTPSIGRL 384 (508)
T ss_pred EEEEeCCCCCCcchhhh
Confidence 58999999999999985
Done!