BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012845
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 119/427 (27%), Positives = 189/427 (44%), Gaps = 42/427 (9%)
Query: 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD 99
N+ V VL+VGAG GL ++ L + G++ V+E+ S +P+A N R + R +
Sbjct: 2 NDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLR-IG 60
Query: 100 GLAEEIERSQPPVDLWRKFI--YCTSVTGPILGSVDHMQPQDFEKVV------SPVSVAH 151
G+A+E+ R+ F+ SV G IL +V + F+ +V +P A
Sbjct: 61 GVADEVVRADDIRGTQGDFVIRLAESVRGEILRTVS----ESFDDMVAATEPCTPAGWAM 116
Query: 152 FSQYXXXXXXXXXXXXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIA 211
SQ I ++ + G I G +S D
Sbjct: 117 LSQ------------DKLEPILLAQARK-------HGGAIRFGTRLLSFRQHDDDAGAGV 157
Query: 212 SFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL 271
+ G E +++ L+G DG S VR+ +GI G L +V V F DL +
Sbjct: 158 TARLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIF-DADLSGIM- 215
Query: 272 NERPGM--LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKL 328
PG +++ + E G D + L V + P + + EDF+P+ C +LI
Sbjct: 216 --EPGTTGWYYLHHPEFKGTFGPTD-RPDRHTLFVEYDPDEGERPEDFTPQRCVELIGLA 272
Query: 329 VGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHN 388
+ +++DI+ W M A +AE++ ++ LAGDA PP GG N V D +
Sbjct: 273 LDAPEVKPELVDIQGWEMAARIAERWR--EGRVFLAGDAAKVTPPTGGMSGNAAVADGFD 330
Query: 389 LAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSE 448
LAWK+A+VL+ A A +L+TYE ERK AE A ++ + M A D ++ E
Sbjct: 331 LAWKLAAVLQGQAGAGLLDTYEDERKVAAELVVAEALAIYAQRMAPHMAEVWDKSVGYPE 390
Query: 449 GIAGRNF 455
+ G +
Sbjct: 391 TLLGFRY 397
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 170/400 (42%), Gaps = 39/400 (9%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
VLI+G GPVG+ L++ L + V+E+ THP+ I R +FR+ G+A++I
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRW-GVAKQI 87
Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYXXXXXXXXXX 165
+ P D + T V G E P+ A
Sbjct: 88 RTAGWPGDHPLDAAWVTRVGG-------------HEVYRIPLGTA-------DTRATPEH 127
Query: 166 XXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQ 225
IC L + G + S D + + L+ G R +
Sbjct: 128 TPEPDAICPQHWLAPLLAEAV-GERLRTRSRLDSFEQRDDHVRATITDLRTGAT--RAVH 184
Query: 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTE 285
L+ DGA S RK +GID Q ++ F + +L LL ER + FF+ +
Sbjct: 185 ARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPEL-RSLLGERAALFFFLMLSS 243
Query: 286 AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE--KLIFKLVGWELSDIDVIDIKP 343
++ + G + L V ++D S + +L+ + V ++ ++I+V+
Sbjct: 244 SLRFPLRALDGRGLYRLTV-------GVDDASKSTMDSFELVRRAVAFD-TEIEVLSDSE 295
Query: 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPA 403
W + VA+ F ++ L GDA H P+GGFGMNTG+ A +L WK+A+ L+ A
Sbjct: 296 WHLTHRVADSF--SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGP 353
Query: 404 SILNTYETERKPIAEFNTALSVQNFRAAM--EVPSALGLD 441
+L TYE ER+P+A + + N R M E+P L D
Sbjct: 354 GLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGLHDD 393
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 171/405 (42%), Gaps = 49/405 (12%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
VLI+G GPVG+ L++ L + V++ THP+ I R +FR+ G+A++I
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVDAGDGTITHPKVSTIGPRSMELFRRW-GVAKQI 87
Query: 106 ERSQPPVDLWRKFIYCTSVTGP-----ILGSVDHMQPQDFEKVVSPVSVAHFSQYXXXXX 160
+ P D + T V G LG+ D + + AH+
Sbjct: 88 RTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPAHWLAPLLAEA 147
Query: 161 XXXXXXXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
G + S D + + L+ G
Sbjct: 148 V--------------------------GERLRTRSRLDSFEQRDDHVRATITDLRTGAT- 180
Query: 221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280
R + L+ DGA S RK +GID Q ++ F + +L LL ER ++FF
Sbjct: 181 -RAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPEL-RSLLGERAALVFF 238
Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE--KLIFKLVGWELSDIDV 338
+ + ++ + G + L V ++D S + +L+ + V ++ ++I+V
Sbjct: 239 LMLSSSLRFPLRSLDGRGLYNLVV-------GVDDASKSTMDSFELVRRAVAFD-TEIEV 290
Query: 339 IDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398
+ W + VA+ F ++ L GDA H P+GGFGMNTG+ A +L WK+A+ L+
Sbjct: 291 LSDSEWHLTHRVADSF--SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLR 348
Query: 399 DIAPASILNTYETERKPIAEFNTALSVQNFRAAM--EVPSALGLD 441
A +L TYE ER+P+A + + N R M E+P L D
Sbjct: 349 GWAGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGLHDD 393
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 22/238 (9%)
Query: 185 LLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG 244
L +G E+L GH ++ TD+ +V+ EG R++ ++G DG STVRK G
Sbjct: 118 LGRGAELLRGHTVRAL--TDEGDHVVVEV--EGPDGPRSLTTRYVVGCDGGRSTVRKAAG 173
Query: 245 IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEG-EFILQ 303
D G +++ FL+ D+ + RP I T +G++++ L +G + I+
Sbjct: 174 FDFPGTSASREM----FLA-DIRGCEITPRP-----IGETVPLGMVMSAPLGDGVDRIIV 223
Query: 304 VPFYPPQQNLEDFSP-EICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY--NQ 360
P + P + +L G ++S + + WV + + Y +
Sbjct: 224 CERGAPARRRTGPPPYQEVAAAWQRLTGQDISHGEPV----WVSAFGDPARQVSAYRRGR 279
Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
++LAGD+ H PAGG GMN VQD+ NL WK+A+V+ APA +L+TY ER P+
Sbjct: 280 VLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGRAPAGLLDTYHEERHPVGR 337
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 110/257 (42%), Gaps = 46/257 (17%)
Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEK-----------------DLQKLVSVHFLSKDL 266
+ C +IG DG S VR+ +G +++GE+ D++ ++H S +
Sbjct: 217 VHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIH--SAES 274
Query: 267 GDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC---EK 323
G ++ R L + L A K G + F+PE+ K
Sbjct: 275 GSIMIIPRENNLVRFYVQ-----LQARAEKGGRV-----------DRTKFTPEVVIANAK 318
Query: 324 LIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGV 383
IF +++ +D + + V EKF ++ +AGDACH P G GMNT +
Sbjct: 319 KIFHPYTFDVQQLDWF--TAYHIGQRVTEKF-SKDERVFIAGDACHTHSPKAGQGMNTSM 375
Query: 384 QDAHNLAWKIASVLKDIAPASILNTYETERKPIAE----FNTALS-VQNFRAAMEVPSAL 438
D +NL WK+ VL A IL TYE ER+P A+ F+ S + + R A +V +
Sbjct: 376 MDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVADEM 435
Query: 439 GLDPTIANSEGIAGRNF 455
G+ + + G F
Sbjct: 436 GVSMDVFKEAFVKGNEF 452
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 40 NEAVVPVLIVGAGPVGLVLSILLT-----KLGIKCSVLEKNKAFSTHPQAHFINNRYALV 94
+E+ VLIVGAGP GL+ + +L+ K +K +++K + QA + R
Sbjct: 5 SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLES 64
Query: 95 FRKLDGLAEEI 105
+ L GLA++I
Sbjct: 65 LKNL-GLADKI 74
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 107/237 (45%), Gaps = 26/237 (10%)
Query: 188 GREILMGHECVSVSATDQCINVIASFLK-EGKCTERNIQCNILIGTDGAGSTVRKLVGID 246
G +I GHE +S+ TD V EGK T ++ L+G DG S+VRK G D
Sbjct: 120 GADIRRGHEVLSL--TDDGAGVTVEVRGPEGKHT---LRAAYLVGCDGGRSSVRKAAGFD 174
Query: 247 LVGEKDLQKLVSVHFLSKDLGDYLLNER-PGMLFFIFNTEAIGVLVAHDLKEG--EFILQ 303
G ++ +L ++ E PG G+++ L G I+
Sbjct: 175 FPGTAATMEMYLADIKGVELQPRMIGETLPG-----------GMVMVGPLPGGITRIIVC 223
Query: 304 VPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY--NQI 361
PPQ+ S +L G +++ + + WV A + + Y ++
Sbjct: 224 ERGTPPQRRETPPSWHEVADAWKRLTGDDIAHAEPV----WVSAFGNATRQVTEYRRGRV 279
Query: 362 ILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
ILAGD+ H PAGG GMNT +QDA NL WK+ +V+ A +L++Y +ER + +
Sbjct: 280 ILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTATEELLDSYHSERHAVGK 336
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 46/257 (17%)
Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEK-----------------DLQKLVSVHFLSKDL 266
+ C +IG DG S VR+ +G +++GE+ D++ ++H S +
Sbjct: 216 VHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIH--SAES 273
Query: 267 GDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC---EK 323
G ++ R L + L A K G + F+PE+ K
Sbjct: 274 GSIMIIPRENNLVRFYVQ-----LQARAEKGGRV-----------DRTKFTPEVVIANAK 317
Query: 324 LIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGV 383
IF +++ +D + + V EKF ++ +AGDACH P G GMNT +
Sbjct: 318 KIFHPYTFDVQQLDWF--TAYHIGQRVTEKF-SKDERVFIAGDACHTHSPKAGQGMNTSM 374
Query: 384 QDAHNLAWKIASVLKDIAPASILNTYETERKPIAE----FNTALS-VQNFRAAMEVPSAL 438
D +NL WK+ VL A IL TYE ER A+ F+ S + + R A +V +
Sbjct: 375 MDTYNLGWKLGLVLTGRAKRDILKTYEEERHAFAQALIDFDHQFSRLFSGRPAKDVADEM 434
Query: 439 GLDPTIANSEGIAGRNF 455
G+ + + G F
Sbjct: 435 GVSMDVFKEAFVKGNEF 451
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 40 NEAVVPVLIVGAGPVGLVLSILLT-----KLGIKCSVLEKNKAFSTHPQAHFINNRYALV 94
+E+ VLIVGAGP GL+ + +L+ K +K +++K + QA + R
Sbjct: 4 SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLES 63
Query: 95 FRKLDGLAEEI 105
+ L GLA++I
Sbjct: 64 LKNL-GLADKI 73
>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus
Length = 570
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 19/235 (8%)
Query: 188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL 247
G EI GHE + + + V + G ++ +G DG STVR+L
Sbjct: 162 GAEIPRGHEVTRLRQDAEAVEVTVA----GPSGPYPVRARYGVGCDGGRSTVRRLAADRF 217
Query: 248 VG-EKDLQKLVS-VHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP 305
G E ++ L+ V +++ G+L F E L G
Sbjct: 218 PGTEATVRALIGYVTTPEREVPRRWERTPDGILVLAFPPEG-------GLGPGWSSSSTG 270
Query: 306 FYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY--NQIIL 363
P D P E L + + + + + W+ A + Y +++L
Sbjct: 271 HSP----AADEGPVTLEDLGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYRSGRVLL 326
Query: 364 AGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
AGDA H P GG G+NTG+QDA NL WK+A+ ++ +L+TY ER P+AE
Sbjct: 327 AGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEELLDTYHDERHPVAE 381
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI- 281
+Q ++G DGA S VR+ +G LVG+ Q + L+ + + P + + +
Sbjct: 197 TVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLA-------VTDFPDVRYKVA 249
Query: 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIF--KLVGWELSDIDVI 339
+E VL+ +EG +++ FY L D + + I +L+ +
Sbjct: 250 IQSEQGNVLIIP--REGGHLVR--FYVEMDKL-DADERVASRNITVEQLIATAQRVLHPY 304
Query: 340 DIK----PWVMHAEVAEKFLCCYNQII--------------LAGDACHRFPPAGGFGMNT 381
++ PW E+ ++ Y+ ++ +AGDACH P G GMN
Sbjct: 305 KLEVKNVPWWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNF 364
Query: 382 GVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
+QD+ NL WK+A+VL+ +L+TY +ER+ +A+
Sbjct: 365 SMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQVVAQ 401
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 29/197 (14%)
Query: 226 CNILIGTDGAGSTVRKL---------VGID-LVGEKDLQKLVSVHFLSKDLGDYLLN--- 272
++L+G DG+ S VRK VG+ ++G L ++ L ++ D N
Sbjct: 155 VDVLVGADGSNSKVRKQYLPFIERFDVGVSXIIGRARLTPALTA-LLPQNFRDGTPNSIV 213
Query: 273 -ERPGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQ---NLEDFSPE-ICEKLIF 326
+ P LF + + V L E FI+ V N+ DFS E +C+ +
Sbjct: 214 PKSPDWLFISXWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQS 273
Query: 327 KLVGWELS------DIDVIDIKPWVMHAEVAEKFLCCYNQII-LAGDACHRFPPAGGFGM 379
+ + W+ S D +I P +H L + + L GDA H P G G
Sbjct: 274 RXISWDPSLHTLVQQSDXENISP--LHLRSXPHLLPWKSSTVTLLGDAIHNXTPXTGSGA 331
Query: 380 NTGVQDAHNLAWKIASV 396
NT ++DA L K+ASV
Sbjct: 332 NTALRDALLLTQKLASV 348
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
V VL++GAGP G V + L+ K G K ++EK K
Sbjct: 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79
+L++GAGP G V +I +LG+K V+EK KA
Sbjct: 4 LLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALG 37
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 35/225 (15%)
Query: 215 KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLG----DYL 270
++G + + ++L+G DG S VR + D Q+ +S ++ G D
Sbjct: 147 RDGHGKPQALGADVLVGADGIHSAVRAHLHPD-------QRPLSHGGITMWRGVTEFDRF 199
Query: 271 LNERPGMLFFIFNTEAIGVLVAHDLK-----EGE----FILQVPFYPPQQ--NLEDFSPE 319
L+ G + N E LVA+ + EG+ ++ VP Q N D++ +
Sbjct: 200 LD---GKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRD 256
Query: 320 -ICEKLIFKLVGWELSDIDVIDI---KPWVMHAEVAEKFLCCY---NQIILAGDACHRFP 372
E ++ W+L D+ D+ ++ + ++ + +I L GDA H
Sbjct: 257 GRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMY 316
Query: 373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417
P G G + + D LA A++ ++ A+ L YE R+P A
Sbjct: 317 PMGANGASQAILDGIELA---AALARNADVAAALREYEEARRPTA 358
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 35/225 (15%)
Query: 215 KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLG----DYL 270
++G + + ++L+G DG S VR + D Q+ +S ++ G D
Sbjct: 147 RDGHGKPQALGADVLVGADGIHSAVRAHLHPD-------QRPLSHGGITXWRGVTEFDRF 199
Query: 271 LNERPGMLFFIFNTEAIGVLVAHDLK-----EGE----FILQVPFYPPQQ--NLEDFSPE 319
L+ G + N E LVA+ + EG+ ++ VP Q N D++ +
Sbjct: 200 LD---GKTXIVANDEHWSRLVAYPISARHAAEGKSLVNWVCXVPSAAVGQLDNEADWNRD 256
Query: 320 -ICEKLIFKLVGWELSDIDVIDI----KPWVMHAEVAEKFLCCYNQ--IILAGDACHRFP 372
E ++ W+L D+ D+ + + + V L + + I L GDA H
Sbjct: 257 GRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPXVDRDPLPHWGRGRITLLGDAAHLXY 316
Query: 373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417
P G G + + D LA A++ ++ A+ L YE R+P A
Sbjct: 317 PXGANGASQAILDGIELA---AALARNADVAAALREYEEARRPTA 358
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 25 YTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA 84
Y Q +A +++K L+VGAGP GL ++ L LG + ++EK FS H
Sbjct: 84 YQQGQACTNTK----------CLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVL 133
Query: 85 HF----INNRYALVFRKLDG 100
H I++ AL +K G
Sbjct: 134 HLWPFTIHDLRALGAKKFYG 153
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-------PQAHFINN-RYALVFRK 97
V ++G+GP G V +I +LG K +EKN+ P +NN Y +
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHG 68
Query: 98 LDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQD 139
D + IE S+ ++L + ++ + G + H+ Q+
Sbjct: 69 TDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQN 110
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 25 YTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA 84
Y Q +A +++K L+VGAGP GL ++ L LG + ++EK FS H
Sbjct: 76 YQQGQACTNTK----------CLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVL 125
Query: 85 HF 86
H
Sbjct: 126 HL 127
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-------PQAHFINN-RYALVFRK 97
V ++G+GP G V +I +LG K +EKN+ P +NN Y +
Sbjct: 30 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHG 89
Query: 98 LDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQD 139
D + IE S+ ++L + ++ + G + H+ Q+
Sbjct: 90 KDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQN 131
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-------PQAHFINN-RYALVFRK 97
V ++G+GP G V +I +LG K +EKN+ P +NN Y +
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHG 68
Query: 98 LDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQD 139
D + IE S+ ++L + ++ + G + H+ Q+
Sbjct: 69 KDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQN 110
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+G GPVGL ++ LL + GI SV E++
Sbjct: 9 VAIIGGGPVGLTMAKLLQQNGIDVSVYERD 38
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 361 IILAGDACHRFPPAGGFGMNTGVQDA 386
I + GDA H PP G G+N+G+ DA
Sbjct: 296 ITMIGDAAHLMPPFAGQGVNSGLVDA 321
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+G GPVGL ++ LL + GI SV E++
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYERD 58
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 361 IILAGDACHRFPPAGGFGMNTGVQDA 386
I + GDA H PP G G+N+G+ DA
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDA 341
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
Length = 398
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+G GPVGL ++ LL + GI SV E++
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYERD 58
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 361 IILAGDACHRFPPAGGFGMNTGVQDA 386
I + GDA H PP G G+N+G+ DA
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDA 341
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
Length = 398
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+G GPVGL ++ LL + GI SV E++
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYERD 58
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 361 IILAGDACHRFPPAGGFGMNTGVQDA 386
I + GDA H PP G G+N+G+ DA
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDA 341
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G++ D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLDLAASDVSTL 309
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERR 34
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRY 91
P+ I+GAG G L+++L + G K + QA +NNRY
Sbjct: 31 PIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRY 77
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERT 34
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+GAGP GL+L LL K GI +LE+
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
+ ++ LAGDA H PP G G+N D L
Sbjct: 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 309
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
+LIVGAG GLV LLT+ G ++LE N
Sbjct: 47 ILIVGAGIAGLVAGDLLTRAGHDVTILEAN 76
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+G GPVGL + LL + GI SV E++
Sbjct: 30 VAIIGGGPVGLTXAKLLQQNGIDVSVYERD 59
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 361 IILAGDACHRFPPAGGFGMNTGVQDA 386
I GDA H PP G G+N+G+ DA
Sbjct: 317 ITXIGDAAHLXPPFAGQGVNSGLVDA 342
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
V I+G GPVGL + LL + GI SV E++
Sbjct: 9 VAIIGGGPVGLTXAKLLQQNGIDVSVYERD 38
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 361 IILAGDACHRFPPAGGFGMNTGVQDA 386
I GDA H PP G G+N+G+ DA
Sbjct: 296 ITXIGDAAHLXPPFAGQGVNSGLVDA 321
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With
A Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With
A Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 34 SKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80
S+T+ + V P L++G+G G V ++ LT+ GI ++E +++ T
Sbjct: 3 SRTLADGDRV-PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDT 48
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
Length = 476
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
V+++GAGP G V +I +LG+K +++EK K
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLE 73
V+IVGAGP GL + L K G+ +VLE
Sbjct: 10 VVIVGAGPSGLTAARELKKAGLSVAVLE 37
>pdb|2P6W|A Chain A, Crystal Structure Of A Glycosyltransferase Involved In The
Glycosylation Of The Major Capsid Of Pbcv-1
pdb|2P73|A Chain A, Crystal Structure Of A Glycosyltransferase Involved In The
Glycosylation Of The Major Capsid Of Pbcv-1
pdb|2P72|A Chain A, Crystal Structure Of A Glycosyltransferase Involved In The
Glycosylation Of The Major Capsid Of Pbcv-1
pdb|2P72|B Chain B, Crystal Structure Of A Glycosyltransferase Involved In The
Glycosylation Of The Major Capsid Of Pbcv-1
Length = 213
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEF 419
P G + +NTGV+ H A +I ++ + + NT+ E+K + E+
Sbjct: 114 PWGSYPINTGVKFVHKDALEIEKIVWSLRNEAPWNTFPYEQKTVYEY 160
>pdb|2ZT9|C Chain C, Crystal Structure Of The Cytochrome B6f Complex From
Nostoc Sp. Pcc 7120
pdb|4H44|C Chain C, 2.70 A Cytochrome B6f Complex Structure From Nostoc Pcc
7120
Length = 289
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTG---VQDAHNLAWKIASV 396
+ + Q + AGDA P GGFG +QDA+ + W IA V
Sbjct: 216 ELIVSEGQAVTAGDALTNNPNVGGFGQLDAEIVLQDANRVGWLIAFV 262
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLE 73
V IVGAGP GL + L K G+ +V+E
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIE 35
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 35 KTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80
KT+ +N+ V V I+G G +GL ++ +LG K ++E+N T
Sbjct: 179 KTLETNK-VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT 223
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLE 73
V IVGAGP GL + L K G+ +V+E
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIE 35
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLE 73
V IVGAGP GL + L K G+ +V+E
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIE 35
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The
Binding Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The
Binding Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 47 LIVGAGPVGLVLSILLTKLGIKCSVLEK 74
L+VGAGP G V +I +LG K +++EK
Sbjct: 7 LVVGAGPGGYVAAIRAAQLGQKVTIVEK 34
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 38 VSNEAVVPVL---IVGAGPVGLVLSILLTKLGIKCSVLEKNKA------FSTHPQAHFIN 88
+SN A P L ++GAG G+ + L+ + G+K +E + ++ +P
Sbjct: 1 MSNRAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDT 60
Query: 89 NRYALVFRKLDGLAEEIERSQ 109
YA + L G+ E E S+
Sbjct: 61 ESYAYGYFALKGIIPEWEWSE 81
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
V+++GAGP G V +I +LG+K + +EK
Sbjct: 6 VVVIGAGPGGYVAAIRAAQLGLKTACIEK 34
>pdb|3TRK|A Chain A, Structure Of The Chikungunya Virus Nsp2 Protease
Length = 324
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQK 255
E + D+ + I KE K + N + G+DL +
Sbjct: 21 ETAGIKLNDRQWSQIIQAFKEDKAYSPEVALN---------EICTRXYGVDLDSGLFSKP 71
Query: 256 LVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVL-VAHDLKEGEFILQVPFYPPQQNLE 314
LVSV++ D + RPG F FN EA +L + +G++ + + +E
Sbjct: 72 LVSVYY-----ADNHWDNRPGGKXFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIE 126
Query: 315 DFSP 318
DF+P
Sbjct: 127 DFNP 130
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLE 73
V+++G GP GL + L K G K +VLE
Sbjct: 14 VVVLGGGPAGLCSAFELQKAGYKVTVLE 41
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 37 IVSNEAVVP-VLIVGAGPVGLVLSILLTKLGIK 68
I E + P ++I+GAGP GL ++ LT+LG K
Sbjct: 2 IAMAELLTPKIVIIGAGPTGLGAAVRLTELGYK 34
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase
From Sinorhizobium Meliloti 1021
Length = 491
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79
++++G+GP G V +I +LG K +V+EK +
Sbjct: 28 LIVIGSGPGGYVCAIKAAQLGXKVAVVEKRSTYG 61
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77
V++VG GP GL ++ L + G+K VL+ ++
Sbjct: 4 VIVVGGGPSGLSAALFLARAGLKVLVLDGGRS 35
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 37 IVSNEAVVP------VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
I S EA+ P +++VG G +GL L I KLG + SV+E +
Sbjct: 159 ISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE 204
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 35 KTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80
KT+ +N+ V V I+G G +GL + +LG K +E+N T
Sbjct: 179 KTLETNK-VEDVTIIGGGAIGLEXAETFVELGKKVRXIERNDHIGT 223
>pdb|4AG6|A Chain A, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|B Chain B, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|C Chain C, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|D Chain D, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
Length = 392
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 249 GEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFI 301
GEKDL+ + ++ LS+ D L+N + G F+ T+ I + + E +++
Sbjct: 335 GEKDLEAITTLXNLSEAEHDLLVNAKRGEGLFVAGTQRIHIKIEAAPYEXQYL 387
>pdb|4AG5|A Chain A, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|B Chain B, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|C Chain C, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|D Chain D, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
Length = 392
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 249 GEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLV 291
GEKDL+ + ++ LS+ D L+N + G F+ T+ I + +
Sbjct: 335 GEKDLEAITTLMNLSEAEHDLLVNAKRGEGLFVAGTQRIHIKI 377
>pdb|1VF5|C Chain C, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|1VF5|P Chain P, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|2D2C|C Chain C, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2D2C|P Chain P, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2E74|C Chain C, Crystal Structure Of The Cytochrome B6f Complex From
M.Laminosus
pdb|2E75|C Chain C, Crystal Structure Of The Cytochrome B6f Complex With
2-nonyl-4- Hydroxyquinoline N-oxide (nqno) From
M.laminosus
pdb|2E76|C Chain C, Crystal Structure Of The Cytochrome B6f Complex With
Tridecyl- Stigmatellin (Tds) From M.Laminosus
pdb|4H0L|C Chain C, Cytochrome B6f Complex Crystal Structure From
Mastigocladus Laminosus With N-side Inhibitor Nqno
pdb|4H13|C Chain C, Crystal Structure Of The Cytochrome B6f Complex From
Mastigocladus Laminosus With Tds
Length = 289
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTG---VQDAHNLAWKIA 394
+ + Q + AG+A P GGFG + +QD + + W IA
Sbjct: 216 ELIVSEGQAVKAGEALTNNPNVGGFGQDDTEIVLQDPNRVKWMIA 260
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
V+I+G GP G V +I +LG + +EK
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEK 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,407,060
Number of Sequences: 62578
Number of extensions: 544819
Number of successful extensions: 1521
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1387
Number of HSP's gapped (non-prelim): 135
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)