Query 012845
Match_columns 455
No_of_seqs 156 out of 1801
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06126 hypothetical protein; 100.0 1.3E-41 2.8E-46 354.1 39.8 364 41-433 5-377 (545)
2 PF01494 FAD_binding_3: FAD bi 100.0 2.6E-42 5.7E-47 340.5 27.2 352 43-424 1-356 (356)
3 PRK06183 mhpA 3-(3-hydroxyphen 100.0 5.8E-40 1.3E-44 340.6 39.2 349 41-431 8-358 (538)
4 PRK06184 hypothetical protein; 100.0 5.2E-40 1.1E-44 338.6 38.5 349 42-432 2-353 (502)
5 COG0654 UbiH 2-polyprenyl-6-me 100.0 2E-40 4.3E-45 330.6 32.5 346 43-433 2-352 (387)
6 PRK08244 hypothetical protein; 100.0 1E-39 2.2E-44 335.8 37.7 339 43-429 2-342 (493)
7 PRK06617 2-octaprenyl-6-methox 100.0 3.4E-40 7.3E-45 327.7 32.8 333 44-433 2-340 (374)
8 PRK08013 oxidoreductase; Provi 100.0 8.6E-40 1.9E-44 327.7 32.0 343 42-432 2-358 (400)
9 PRK08294 phenol 2-monooxygenas 100.0 2E-38 4.2E-43 332.1 40.4 365 41-434 30-415 (634)
10 PRK08850 2-octaprenyl-6-methox 100.0 2E-39 4.3E-44 325.9 31.4 346 41-432 2-358 (405)
11 PRK08849 2-octaprenyl-3-methyl 100.0 2.3E-39 5E-44 323.1 31.5 342 43-433 3-351 (384)
12 PRK05714 2-octaprenyl-3-methyl 100.0 4E-39 8.7E-44 323.9 32.3 344 43-433 2-362 (405)
13 PRK08132 FAD-dependent oxidore 100.0 5.8E-38 1.2E-42 326.5 40.7 346 42-430 22-370 (547)
14 PRK07364 2-octaprenyl-6-methox 100.0 5.8E-39 1.3E-43 323.9 31.6 350 41-433 16-371 (415)
15 PRK06834 hypothetical protein; 100.0 5.2E-38 1.1E-42 320.5 37.6 333 42-429 2-335 (488)
16 TIGR01989 COQ6 Ubiquinone bios 100.0 1.5E-38 3.3E-43 321.9 32.8 346 44-433 1-410 (437)
17 PRK07045 putative monooxygenas 100.0 2.6E-38 5.6E-43 316.2 33.7 347 41-432 3-359 (388)
18 PRK07494 2-octaprenyl-6-methox 100.0 1.1E-38 2.4E-43 319.0 30.5 349 39-432 3-353 (388)
19 PRK07190 hypothetical protein; 100.0 1.8E-37 3.9E-42 316.1 38.9 343 41-431 3-347 (487)
20 PRK08243 4-hydroxybenzoate 3-m 100.0 5.8E-38 1.2E-42 313.8 33.8 343 43-435 2-354 (392)
21 PRK06475 salicylate hydroxylas 100.0 2.3E-38 5E-43 317.5 30.0 342 44-427 3-356 (400)
22 PRK07333 2-octaprenyl-6-methox 100.0 6.7E-38 1.4E-42 315.0 32.0 345 44-432 2-356 (403)
23 PRK08020 ubiF 2-octaprenyl-3-m 100.0 2.4E-37 5.1E-42 309.7 33.5 345 41-433 3-358 (391)
24 PRK08773 2-octaprenyl-3-methyl 100.0 1.2E-37 2.7E-42 311.7 31.3 340 41-427 4-353 (392)
25 PRK06753 hypothetical protein; 100.0 7.6E-38 1.7E-42 311.3 29.1 329 44-432 1-339 (373)
26 TIGR01988 Ubi-OHases Ubiquinon 100.0 1.4E-37 3.1E-42 310.7 30.2 342 45-433 1-353 (385)
27 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.5E-37 3.2E-42 310.3 29.4 340 45-433 1-350 (382)
28 PRK09126 hypothetical protein; 100.0 1.8E-37 3.9E-42 310.7 29.7 343 42-432 2-356 (392)
29 PRK07538 hypothetical protein; 100.0 6.4E-37 1.4E-41 308.4 32.8 342 44-426 1-361 (413)
30 PRK06996 hypothetical protein; 100.0 1.1E-36 2.4E-41 305.0 33.3 344 39-432 7-361 (398)
31 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 9.5E-37 2.1E-41 304.3 32.2 343 43-436 2-355 (390)
32 PRK07588 hypothetical protein; 100.0 9.2E-37 2E-41 305.3 32.1 341 44-431 1-349 (391)
33 PRK06185 hypothetical protein; 100.0 3E-36 6.4E-41 303.4 34.3 349 40-433 3-359 (407)
34 PRK07608 ubiquinone biosynthes 100.0 1.9E-36 4.2E-41 302.9 32.4 343 42-433 4-356 (388)
35 PRK08163 salicylate hydroxylas 100.0 1.2E-36 2.6E-41 305.2 30.1 348 41-433 2-358 (396)
36 PRK06847 hypothetical protein; 100.0 5.6E-36 1.2E-40 298.2 34.1 340 41-432 2-352 (375)
37 PRK05868 hypothetical protein; 100.0 3.7E-36 8E-41 298.0 32.4 342 44-432 2-353 (372)
38 PRK05732 2-octaprenyl-6-methox 100.0 4.4E-36 9.6E-41 301.0 31.1 343 42-433 2-359 (395)
39 PRK07236 hypothetical protein; 100.0 8E-36 1.7E-40 297.9 30.9 338 41-431 4-375 (386)
40 TIGR03219 salicylate_mono sali 100.0 4.8E-36 1E-40 302.2 26.6 347 44-433 1-375 (414)
41 KOG2614 Kynurenine 3-monooxyge 100.0 2.6E-36 5.6E-41 285.4 22.5 337 43-428 2-353 (420)
42 PLN02985 squalene monooxygenas 100.0 1.6E-35 3.5E-40 302.9 28.9 341 41-432 41-402 (514)
43 PLN02927 antheraxanthin epoxid 100.0 6.6E-35 1.4E-39 300.9 31.5 359 41-442 79-459 (668)
44 PTZ00367 squalene epoxidase; P 100.0 1.7E-34 3.7E-39 296.6 25.8 347 42-433 32-423 (567)
45 PLN00093 geranylgeranyl diphos 100.0 8.3E-31 1.8E-35 264.2 36.4 341 37-432 33-385 (450)
46 TIGR02023 BchP-ChlP geranylger 100.0 1.2E-29 2.6E-34 253.3 35.1 323 44-424 1-328 (388)
47 TIGR02028 ChlP geranylgeranyl 100.0 8.9E-29 1.9E-33 247.2 34.9 333 44-431 1-345 (398)
48 PRK08255 salicylyl-CoA 5-hydro 100.0 4.6E-30 9.9E-35 275.1 25.4 331 44-443 1-351 (765)
49 TIGR02032 GG-red-SF geranylger 100.0 3.7E-29 7.9E-34 240.6 28.8 291 44-393 1-295 (295)
50 PRK11445 putative oxidoreducta 100.0 8.9E-29 1.9E-33 243.6 27.4 312 44-421 2-321 (351)
51 COG0644 FixC Dehydrogenases (f 100.0 2.9E-28 6.3E-33 243.6 31.5 331 42-432 2-340 (396)
52 PRK10015 oxidoreductase; Provi 100.0 8.2E-27 1.8E-31 234.8 30.5 331 41-416 3-355 (429)
53 PRK10157 putative oxidoreducta 100.0 3.3E-26 7.2E-31 230.7 29.6 339 41-424 3-363 (428)
54 KOG3855 Monooxygenase involved 99.9 4.9E-26 1.1E-30 214.0 23.1 348 41-432 34-446 (481)
55 TIGR01790 carotene-cycl lycope 99.9 3.9E-24 8.5E-29 213.9 33.1 307 45-419 1-321 (388)
56 PLN02697 lycopene epsilon cycl 99.9 1.1E-23 2.3E-28 214.7 34.1 316 41-424 106-447 (529)
57 KOG1298 Squalene monooxygenase 99.9 9E-25 2E-29 203.4 22.1 349 32-433 34-403 (509)
58 PLN02463 lycopene beta cyclase 99.9 1.6E-23 3.6E-28 210.3 31.1 329 41-436 26-392 (447)
59 TIGR01789 lycopene_cycl lycope 99.9 2.5E-22 5.5E-27 198.3 27.4 305 45-425 1-315 (370)
60 PF04820 Trp_halogenase: Trypt 99.9 3.7E-22 8E-27 201.7 25.6 335 45-432 1-386 (454)
61 PF05834 Lycopene_cycl: Lycope 99.9 4E-20 8.7E-25 183.4 28.0 282 45-395 1-290 (374)
62 PF08491 SE: Squalene epoxidas 99.6 6.7E-15 1.4E-19 135.3 13.2 190 226-433 2-207 (276)
63 COG2081 Predicted flavoprotein 99.5 2.2E-14 4.7E-19 136.7 9.5 151 42-237 2-167 (408)
64 PRK04176 ribulose-1,5-biphosph 99.5 3E-13 6.4E-18 126.6 15.1 144 41-243 23-179 (257)
65 TIGR01377 soxA_mon sarcosine o 99.5 1.2E-11 2.7E-16 123.3 25.6 177 44-248 1-212 (380)
66 TIGR00292 thiazole biosynthesi 99.5 7.3E-13 1.6E-17 123.6 15.5 143 42-243 20-176 (254)
67 KOG2415 Electron transfer flav 99.5 7.2E-12 1.6E-16 118.8 19.7 345 41-429 74-458 (621)
68 PRK11259 solA N-methyltryptoph 99.4 2.9E-10 6.2E-15 113.3 27.7 61 151-238 145-205 (376)
69 PF01946 Thi4: Thi4 family; PD 99.4 7.8E-12 1.7E-16 110.2 13.3 144 41-243 15-171 (230)
70 PF03486 HI0933_like: HI0933-l 99.4 1.9E-13 4.1E-18 135.7 2.9 140 44-237 1-166 (409)
71 PRK13369 glycerol-3-phosphate 99.4 8.1E-10 1.8E-14 114.1 29.8 181 40-243 3-222 (502)
72 PF01266 DAO: FAD dependent ox 99.4 7.7E-11 1.7E-15 116.1 20.7 173 45-245 1-212 (358)
73 TIGR01373 soxB sarcosine oxida 99.3 2.8E-10 6E-15 114.7 23.8 37 41-77 28-66 (407)
74 PRK12409 D-amino acid dehydrog 99.3 7.4E-10 1.6E-14 111.7 24.6 71 152-244 194-266 (410)
75 PLN02172 flavin-containing mon 99.3 7.8E-11 1.7E-15 119.5 16.8 155 41-237 8-173 (461)
76 PRK00711 D-amino acid dehydrog 99.3 5E-10 1.1E-14 113.2 22.4 68 151-245 197-266 (416)
77 PRK12266 glpD glycerol-3-phosp 99.3 6.8E-09 1.5E-13 107.2 31.1 71 151-242 151-222 (508)
78 COG1635 THI4 Ribulose 1,5-bisp 99.3 3.5E-11 7.5E-16 105.3 11.1 143 42-243 29-184 (262)
79 PRK01747 mnmC bifunctional tRN 99.2 7.7E-10 1.7E-14 118.1 22.1 62 150-238 403-464 (662)
80 PF13738 Pyr_redox_3: Pyridine 99.2 5.7E-11 1.2E-15 107.6 11.6 135 47-238 1-139 (203)
81 PRK05192 tRNA uridine 5-carbox 99.2 2E-10 4.4E-15 117.8 16.0 150 41-238 2-158 (618)
82 PRK11728 hydroxyglutarate oxid 99.2 2.4E-10 5.3E-15 114.5 16.4 70 150-246 144-214 (393)
83 COG0579 Predicted dehydrogenas 99.2 4.2E-10 9E-15 111.0 15.7 179 42-247 2-222 (429)
84 PTZ00383 malate:quinone oxidor 99.2 2.9E-10 6.2E-15 116.0 14.6 71 150-245 206-282 (497)
85 TIGR03329 Phn_aa_oxid putative 99.2 3.1E-09 6.7E-14 108.7 22.2 61 150-238 178-238 (460)
86 KOG1399 Flavin-containing mono 99.2 2E-10 4.3E-15 114.7 12.0 149 41-237 4-153 (448)
87 PF12831 FAD_oxidored: FAD dep 99.1 3.1E-11 6.7E-16 122.0 5.2 152 45-245 1-157 (428)
88 KOG2820 FAD-dependent oxidored 99.1 8.8E-09 1.9E-13 95.9 20.4 167 40-237 4-212 (399)
89 TIGR00275 flavoprotein, HI0933 99.1 1.8E-10 3.9E-15 115.4 8.7 159 47-247 1-181 (400)
90 PLN02464 glycerol-3-phosphate 99.1 2.3E-08 4.9E-13 105.6 24.8 74 150-244 227-304 (627)
91 PRK11101 glpA sn-glycerol-3-ph 99.1 3.1E-09 6.7E-14 110.6 17.4 75 150-245 144-220 (546)
92 COG0665 DadA Glycine/D-amino a 99.1 2.5E-08 5.3E-13 99.8 23.2 65 149-239 150-214 (387)
93 PF00743 FMO-like: Flavin-bind 99.1 8.9E-10 1.9E-14 113.4 12.5 144 44-238 2-151 (531)
94 PF01134 GIDA: Glucose inhibit 99.1 2.4E-09 5.3E-14 104.4 14.4 144 45-235 1-150 (392)
95 PRK07233 hypothetical protein; 99.1 3.9E-08 8.4E-13 99.9 23.9 36 45-80 1-36 (434)
96 TIGR01320 mal_quin_oxido malat 99.1 3.1E-09 6.8E-14 108.6 15.7 77 149-246 172-250 (483)
97 COG0578 GlpA Glycerol-3-phosph 99.1 6.8E-08 1.5E-12 97.5 24.5 183 41-244 10-233 (532)
98 PRK05257 malate:quinone oxidor 99.1 6.6E-09 1.4E-13 106.4 17.5 76 150-246 178-256 (494)
99 COG3380 Predicted NAD/FAD-depe 99.0 4.6E-09 1E-13 94.9 13.9 35 44-78 2-36 (331)
100 TIGR01292 TRX_reduct thioredox 99.0 1.8E-09 4E-14 103.8 12.3 112 44-237 1-112 (300)
101 PRK06481 fumarate reductase fl 99.0 8.9E-09 1.9E-13 106.3 17.2 39 41-79 59-97 (506)
102 COG2072 TrkA Predicted flavopr 99.0 4.7E-09 1E-13 106.2 14.7 138 40-238 5-145 (443)
103 PRK13339 malate:quinone oxidor 99.0 1E-08 2.2E-13 104.3 16.8 77 149-246 178-257 (497)
104 PRK11883 protoporphyrinogen ox 99.0 7.2E-08 1.6E-12 98.5 22.6 35 45-79 2-38 (451)
105 PRK08274 tricarballylate dehyd 99.0 2.7E-09 5.9E-14 109.4 11.9 37 41-77 2-38 (466)
106 TIGR03364 HpnW_proposed FAD de 99.0 5.1E-09 1.1E-13 103.9 12.5 34 44-77 1-34 (365)
107 PLN02661 Putative thiazole syn 99.0 1.6E-08 3.5E-13 97.3 14.9 37 42-78 91-128 (357)
108 PRK12416 protoporphyrinogen ox 99.0 7.4E-08 1.6E-12 98.8 21.0 35 45-79 3-43 (463)
109 COG0492 TrxB Thioredoxin reduc 99.0 4.8E-09 1E-13 100.2 11.1 114 42-238 2-116 (305)
110 PRK15317 alkyl hydroperoxide r 98.9 6.4E-09 1.4E-13 107.8 12.7 114 41-237 209-322 (517)
111 KOG2844 Dimethylglycine dehydr 98.9 1.9E-08 4.1E-13 101.2 15.3 63 149-238 181-244 (856)
112 TIGR00562 proto_IX_ox protopor 98.9 4.4E-07 9.5E-12 93.1 26.0 36 44-79 3-42 (462)
113 PRK09078 sdhA succinate dehydr 98.9 4.1E-08 8.9E-13 103.3 18.5 40 39-78 8-47 (598)
114 PRK07804 L-aspartate oxidase; 98.9 4.3E-08 9.4E-13 102.0 18.3 38 41-78 14-51 (541)
115 PRK07573 sdhA succinate dehydr 98.9 3.5E-08 7.6E-13 104.3 17.8 37 42-78 34-70 (640)
116 PRK07121 hypothetical protein; 98.9 1.2E-08 2.5E-13 105.3 13.4 38 41-78 18-55 (492)
117 TIGR01812 sdhA_frdA_Gneg succi 98.9 3.7E-08 8.1E-13 103.4 16.9 66 155-241 129-195 (566)
118 PF00890 FAD_binding_2: FAD bi 98.9 1.9E-08 4.2E-13 101.7 14.2 65 153-238 139-204 (417)
119 TIGR00551 nadB L-aspartate oxi 98.9 3.6E-08 7.9E-13 101.5 16.4 64 155-241 128-193 (488)
120 PLN00128 Succinate dehydrogena 98.9 7.9E-08 1.7E-12 101.4 19.0 37 42-78 49-85 (635)
121 TIGR01813 flavo_cyto_c flavocy 98.9 3.2E-08 6.9E-13 100.7 15.6 34 45-78 1-35 (439)
122 TIGR03143 AhpF_homolog putativ 98.9 1.8E-08 3.9E-13 105.2 13.6 113 41-237 2-114 (555)
123 PRK06854 adenylylsulfate reduc 98.9 4.5E-08 9.8E-13 103.1 16.7 38 41-78 9-48 (608)
124 TIGR03140 AhpF alkyl hydropero 98.9 1.4E-08 3.1E-13 105.1 12.6 114 41-237 210-323 (515)
125 PRK07057 sdhA succinate dehydr 98.9 9.6E-08 2.1E-12 100.4 18.7 37 41-77 10-46 (591)
126 PTZ00139 Succinate dehydrogena 98.9 8.2E-08 1.8E-12 101.3 18.1 38 41-78 27-64 (617)
127 PRK05945 sdhA succinate dehydr 98.9 5.6E-08 1.2E-12 102.0 16.8 37 42-78 2-40 (575)
128 PLN02815 L-aspartate oxidase 98.9 9.2E-08 2E-12 100.1 17.7 57 19-78 7-63 (594)
129 PRK06452 sdhA succinate dehydr 98.9 9.8E-08 2.1E-12 99.9 17.8 38 41-78 3-40 (566)
130 PLN02612 phytoene desaturase 98.9 2.3E-06 5E-11 89.5 28.1 64 41-105 91-170 (567)
131 PRK06175 L-aspartate oxidase; 98.9 8.8E-08 1.9E-12 97.0 16.7 36 42-78 3-38 (433)
132 PRK09231 fumarate reductase fl 98.8 1.1E-07 2.4E-12 99.8 17.5 38 41-78 2-41 (582)
133 PRK07803 sdhA succinate dehydr 98.8 9.8E-08 2.1E-12 100.9 17.1 38 41-78 6-43 (626)
134 PRK08958 sdhA succinate dehydr 98.8 1.6E-07 3.6E-12 98.5 18.5 37 42-78 6-42 (588)
135 TIGR00136 gidA glucose-inhibit 98.8 5.8E-08 1.3E-12 99.8 14.6 148 44-238 1-155 (617)
136 PRK06069 sdhA succinate dehydr 98.8 9.6E-08 2.1E-12 100.3 16.7 40 40-79 2-44 (577)
137 PRK08205 sdhA succinate dehydr 98.8 1.8E-07 3.8E-12 98.3 18.5 38 40-78 2-39 (583)
138 PRK08626 fumarate reductase fl 98.8 1.4E-07 3E-12 100.1 17.6 38 41-78 3-40 (657)
139 PRK08401 L-aspartate oxidase; 98.8 1.3E-07 2.8E-12 96.8 16.4 34 44-77 2-35 (466)
140 PRK08641 sdhA succinate dehydr 98.8 2.1E-07 4.6E-12 97.8 17.9 37 42-78 2-38 (589)
141 PRK08275 putative oxidoreducta 98.8 3E-08 6.4E-13 103.7 11.3 38 41-78 7-46 (554)
142 PRK06263 sdhA succinate dehydr 98.8 1.5E-07 3.3E-12 98.2 16.4 36 41-77 5-40 (543)
143 TIGR01176 fum_red_Fp fumarate 98.8 2.3E-07 5E-12 97.2 17.6 38 42-79 2-41 (580)
144 PRK06370 mercuric reductase; V 98.8 1.2E-07 2.6E-12 97.1 14.8 38 39-76 1-38 (463)
145 PRK09897 hypothetical protein; 98.7 1.1E-07 2.3E-12 97.8 13.2 35 44-78 2-38 (534)
146 PRK08071 L-aspartate oxidase; 98.7 2.8E-07 6E-12 95.3 16.0 35 43-78 3-37 (510)
147 PLN02676 polyamine oxidase 98.7 1.4E-06 3E-11 89.5 20.8 39 41-79 24-63 (487)
148 PRK10262 thioredoxin reductase 98.7 2.1E-07 4.5E-12 90.7 14.0 35 41-75 4-38 (321)
149 PRK05976 dihydrolipoamide dehy 98.7 1.8E-07 3.9E-12 96.1 14.1 35 41-75 2-36 (472)
150 PRK07843 3-ketosteroid-delta-1 98.7 1.1E-07 2.3E-12 99.4 12.4 38 41-78 5-42 (557)
151 TIGR01424 gluta_reduc_2 glutat 98.7 1.3E-07 2.8E-12 96.4 12.3 33 43-75 2-34 (446)
152 PRK09077 L-aspartate oxidase; 98.7 7.8E-07 1.7E-11 92.6 17.4 37 41-78 6-42 (536)
153 PF00070 Pyr_redox: Pyridine n 98.7 3.9E-07 8.4E-12 69.2 11.2 78 45-212 1-78 (80)
154 PLN02568 polyamine oxidase 98.7 4E-07 8.7E-12 94.3 14.5 41 39-79 1-46 (539)
155 TIGR01421 gluta_reduc_1 glutat 98.7 4.4E-07 9.6E-12 92.5 14.7 34 42-75 1-34 (450)
156 PRK06134 putative FAD-binding 98.7 1.8E-07 3.9E-12 98.3 12.0 38 41-78 10-47 (581)
157 PLN02487 zeta-carotene desatur 98.6 1.9E-05 4E-10 82.2 26.4 63 43-106 75-153 (569)
158 PRK06116 glutathione reductase 98.6 3.7E-07 8E-12 93.2 13.8 35 41-75 2-36 (450)
159 PRK06416 dihydrolipoamide dehy 98.6 5.5E-07 1.2E-11 92.3 15.1 35 42-76 3-37 (462)
160 PF06039 Mqo: Malate:quinone o 98.6 5.9E-07 1.3E-11 88.2 14.3 75 150-245 176-253 (488)
161 PRK05249 soluble pyridine nucl 98.6 6.4E-07 1.4E-11 91.8 15.2 38 41-78 3-40 (461)
162 PRK05335 tRNA (uracil-5-)-meth 98.6 2.4E-07 5.2E-12 91.5 11.4 102 44-169 3-113 (436)
163 PRK06467 dihydrolipoamide dehy 98.6 6.4E-07 1.4E-11 91.9 15.1 38 41-78 2-39 (471)
164 TIGR01811 sdhA_Bsu succinate d 98.6 9.7E-07 2.1E-11 92.9 16.6 32 46-77 1-32 (603)
165 COG1232 HemY Protoporphyrinoge 98.6 1E-06 2.2E-11 87.8 15.7 63 45-108 2-81 (444)
166 PRK14694 putative mercuric red 98.6 8.7E-07 1.9E-11 90.9 15.8 36 41-76 4-39 (468)
167 PF07992 Pyr_redox_2: Pyridine 98.6 2.7E-07 5.8E-12 83.3 10.6 33 45-77 1-33 (201)
168 PRK12844 3-ketosteroid-delta-1 98.6 3.2E-07 6.9E-12 95.9 12.2 37 42-78 5-41 (557)
169 PRK12842 putative succinate de 98.6 3.1E-07 6.7E-12 96.5 12.1 38 41-78 7-44 (574)
170 PRK12843 putative FAD-binding 98.6 4E-07 8.7E-12 95.6 12.6 38 41-78 14-51 (578)
171 PRK07395 L-aspartate oxidase; 98.6 9.4E-07 2E-11 92.1 14.9 37 41-78 7-43 (553)
172 PRK12834 putative FAD-binding 98.6 3.2E-07 6.9E-12 95.9 11.3 36 41-76 2-37 (549)
173 PRK12837 3-ketosteroid-delta-1 98.6 2.8E-07 6.2E-12 95.4 10.7 36 42-78 6-41 (513)
174 PF13450 NAD_binding_8: NAD(P) 98.6 6.5E-08 1.4E-12 70.8 4.2 32 48-79 1-32 (68)
175 PRK12839 hypothetical protein; 98.6 4.9E-07 1.1E-11 94.6 12.1 38 41-78 6-43 (572)
176 PRK06327 dihydrolipoamide dehy 98.6 1.4E-06 3E-11 89.6 15.0 34 41-74 2-35 (475)
177 PRK13977 myosin-cross-reactive 98.6 3.6E-06 7.9E-11 86.1 17.7 39 42-80 21-63 (576)
178 PLN02328 lysine-specific histo 98.6 2E-05 4.3E-10 84.4 24.0 38 42-79 237-274 (808)
179 PF13434 K_oxygenase: L-lysine 98.5 4.4E-08 9.5E-13 95.6 3.6 150 43-236 2-158 (341)
180 PF13454 NAD_binding_9: FAD-NA 98.5 7.5E-07 1.6E-11 77.0 10.9 65 151-235 90-155 (156)
181 PLN02268 probable polyamine ox 98.5 1.5E-06 3.2E-11 88.4 14.6 36 44-79 1-36 (435)
182 PRK07251 pyridine nucleotide-d 98.5 6.9E-07 1.5E-11 90.9 12.1 36 42-77 2-37 (438)
183 PRK07512 L-aspartate oxidase; 98.5 1.5E-06 3.2E-11 90.0 14.7 35 41-77 7-41 (513)
184 KOG0042 Glycerol-3-phosphate d 98.5 1.4E-06 3E-11 86.2 12.4 183 41-243 65-293 (680)
185 PLN02529 lysine-specific histo 98.5 2.1E-05 4.6E-10 83.7 22.2 38 42-79 159-196 (738)
186 PTZ00052 thioredoxin reductase 98.5 7E-07 1.5E-11 92.1 10.7 34 42-75 4-37 (499)
187 PRK06115 dihydrolipoamide dehy 98.5 1.3E-06 2.8E-11 89.6 12.5 37 42-78 2-38 (466)
188 PRK08010 pyridine nucleotide-d 98.5 1.4E-06 3.1E-11 88.6 12.5 35 42-76 2-36 (441)
189 KOG2853 Possible oxidoreductas 98.5 2.9E-05 6.3E-10 72.8 19.6 38 41-78 84-125 (509)
190 COG1231 Monoamine oxidase [Ami 98.5 2.6E-06 5.5E-11 83.4 13.0 40 41-80 5-44 (450)
191 TIGR02485 CobZ_N-term precorri 98.5 1.2E-06 2.7E-11 88.9 11.5 63 155-240 123-186 (432)
192 PTZ00058 glutathione reductase 98.4 2.4E-06 5.2E-11 88.8 13.1 36 40-75 45-80 (561)
193 PRK12835 3-ketosteroid-delta-1 98.4 5.7E-06 1.2E-10 86.9 16.0 39 41-79 9-47 (584)
194 PRK12845 3-ketosteroid-delta-1 98.4 4.2E-06 9.1E-11 87.4 14.9 37 41-78 14-50 (564)
195 PRK13748 putative mercuric red 98.4 5.4E-06 1.2E-10 87.2 15.9 34 42-75 97-130 (561)
196 PRK07818 dihydrolipoamide dehy 98.4 3.8E-06 8.3E-11 86.2 14.2 34 42-75 3-36 (466)
197 TIGR02061 aprA adenosine phosp 98.4 1.6E-06 3.6E-11 90.8 11.4 34 45-78 1-38 (614)
198 PTZ00306 NADH-dependent fumara 98.4 1.1E-05 2.3E-10 91.3 18.6 38 41-78 407-444 (1167)
199 PLN02507 glutathione reductase 98.4 4.9E-06 1.1E-10 85.9 14.4 35 41-75 23-57 (499)
200 COG0029 NadB Aspartate oxidase 98.4 5.6E-06 1.2E-10 81.7 13.7 159 45-241 9-200 (518)
201 PLN02976 amine oxidase 98.4 2.5E-05 5.5E-10 86.6 20.0 38 42-79 692-729 (1713)
202 TIGR01350 lipoamide_DH dihydro 98.4 3.2E-06 7E-11 86.7 12.6 35 43-78 1-35 (461)
203 PRK12779 putative bifunctional 98.4 8.9E-07 1.9E-11 97.2 8.9 37 42-78 305-341 (944)
204 TIGR00137 gid_trmFO tRNA:m(5)U 98.4 3.1E-06 6.8E-11 84.2 11.5 35 44-78 1-35 (433)
205 COG1053 SdhA Succinate dehydro 98.4 6.7E-06 1.5E-10 85.1 14.2 40 40-79 3-42 (562)
206 PLN02546 glutathione reductase 98.4 6E-06 1.3E-10 85.9 13.9 33 42-74 78-110 (558)
207 PLN03000 amine oxidase 98.3 3.2E-05 7E-10 82.9 19.2 38 42-79 183-220 (881)
208 PRK14727 putative mercuric red 98.3 1.1E-05 2.5E-10 82.9 15.5 39 40-78 13-51 (479)
209 COG2509 Uncharacterized FAD-de 98.3 3.3E-05 7.2E-10 75.5 17.4 58 154-237 172-230 (486)
210 TIGR02053 MerA mercuric reduct 98.3 1.1E-05 2.4E-10 82.8 15.0 33 44-76 1-33 (463)
211 PRK04965 NADH:flavorubredoxin 98.3 8E-06 1.7E-10 81.4 13.6 108 43-246 141-250 (377)
212 COG1233 Phytoene dehydrogenase 98.3 4.8E-07 1E-11 93.0 4.8 38 42-79 2-39 (487)
213 PRK06292 dihydrolipoamide dehy 98.3 8.6E-06 1.9E-10 83.5 13.9 34 42-75 2-35 (460)
214 PLN02852 ferredoxin-NADP+ redu 98.3 8.9E-07 1.9E-11 90.1 6.3 61 14-79 2-64 (491)
215 PRK13800 putative oxidoreducta 98.3 1.6E-05 3.5E-10 87.7 16.7 37 41-77 11-47 (897)
216 KOG2665 Predicted FAD-dependen 98.3 3.9E-06 8.5E-11 77.8 9.7 193 21-239 27-259 (453)
217 KOG2852 Possible oxidoreductas 98.3 3.1E-06 6.7E-11 77.5 8.8 175 42-238 9-209 (380)
218 PRK09564 coenzyme A disulfide 98.3 3.7E-06 8E-11 85.8 10.3 34 45-78 2-37 (444)
219 PRK06912 acoL dihydrolipoamide 98.3 1.9E-05 4E-10 80.9 15.1 32 45-76 2-33 (458)
220 PRK13512 coenzyme A disulfide 98.3 6.6E-06 1.4E-10 83.7 11.5 34 45-78 3-38 (438)
221 PRK12831 putative oxidoreducta 98.3 1.6E-06 3.6E-11 88.5 7.1 38 41-78 138-175 (464)
222 PRK09853 putative selenate red 98.2 4.9E-06 1.1E-10 90.6 10.2 37 42-78 538-574 (1019)
223 PRK09754 phenylpropionate diox 98.2 7.6E-06 1.7E-10 82.1 10.7 37 42-78 2-40 (396)
224 KOG0404 Thioredoxin reductase 98.2 5.9E-06 1.3E-10 72.9 8.2 119 41-237 6-124 (322)
225 PRK07208 hypothetical protein; 98.2 1.6E-06 3.5E-11 89.3 5.5 40 40-79 1-40 (479)
226 TIGR02462 pyranose_ox pyranose 98.2 5.5E-05 1.2E-09 78.0 16.6 36 44-79 1-36 (544)
227 COG1249 Lpd Pyruvate/2-oxoglut 98.2 2.6E-05 5.6E-10 78.6 13.9 104 41-239 171-274 (454)
228 KOG1335 Dihydrolipoamide dehyd 98.2 7.2E-06 1.6E-10 78.0 9.2 66 7-78 6-74 (506)
229 COG4529 Uncharacterized protei 98.2 7.5E-06 1.6E-10 80.9 9.7 43 44-89 2-47 (474)
230 TIGR01372 soxA sarcosine oxida 98.2 2.3E-05 5E-10 87.3 14.5 37 42-78 162-198 (985)
231 TIGR01423 trypano_reduc trypan 98.2 3.5E-05 7.6E-10 79.1 14.8 34 42-75 2-36 (486)
232 PRK07845 flavoprotein disulfid 98.2 2.2E-05 4.8E-10 80.5 13.3 32 45-76 3-34 (466)
233 PRK09754 phenylpropionate diox 98.2 1.8E-05 3.9E-10 79.5 12.4 99 43-238 144-242 (396)
234 PTZ00153 lipoamide dehydrogena 98.2 3.1E-05 6.7E-10 81.9 14.3 34 42-75 115-148 (659)
235 TIGR01350 lipoamide_DH dihydro 98.2 2.4E-05 5.2E-10 80.2 13.2 103 43-240 170-272 (461)
236 PTZ00318 NADH dehydrogenase-li 98.2 2.2E-05 4.8E-10 79.5 12.6 38 41-78 8-45 (424)
237 TIGR01438 TGR thioredoxin and 98.1 2.9E-05 6.3E-10 79.9 13.1 33 43-75 2-34 (484)
238 PRK05249 soluble pyridine nucl 98.1 3E-05 6.6E-10 79.5 12.9 100 43-239 175-274 (461)
239 KOG0029 Amine oxidase [Seconda 98.1 3.1E-06 6.7E-11 86.4 5.2 40 41-80 13-52 (501)
240 PRK06416 dihydrolipoamide dehy 98.1 3.5E-05 7.7E-10 79.0 13.0 103 43-239 172-274 (462)
241 COG3349 Uncharacterized conser 98.1 3.2E-06 6.8E-11 84.3 4.8 39 44-82 1-39 (485)
242 TIGR03169 Nterm_to_SelD pyridi 98.1 1.6E-05 3.4E-10 78.9 9.7 34 45-78 1-37 (364)
243 PRK04965 NADH:flavorubredoxin 98.1 3.3E-05 7.1E-10 77.0 11.9 35 44-78 3-39 (377)
244 PRK06327 dihydrolipoamide dehy 98.1 4.8E-05 1E-09 78.2 13.3 104 43-239 183-286 (475)
245 COG1249 Lpd Pyruvate/2-oxoglut 98.1 5.6E-05 1.2E-09 76.3 13.3 36 41-76 2-37 (454)
246 KOG2404 Fumarate reductase, fl 98.1 2E-05 4.2E-10 73.4 8.9 35 45-79 11-45 (477)
247 PRK06115 dihydrolipoamide dehy 98.0 6.2E-05 1.3E-09 77.2 13.4 106 42-239 173-278 (466)
248 TIGR02053 MerA mercuric reduct 98.0 6E-05 1.3E-09 77.3 13.3 103 43-239 166-268 (463)
249 PRK07251 pyridine nucleotide-d 98.0 6.6E-05 1.4E-09 76.4 13.5 98 43-238 157-254 (438)
250 PRK07818 dihydrolipoamide dehy 98.0 7.1E-05 1.5E-09 76.8 13.4 104 43-239 172-275 (466)
251 PRK06370 mercuric reductase; V 98.0 6.8E-05 1.5E-09 76.9 13.3 103 43-239 171-273 (463)
252 TIGR02730 carot_isom carotene 98.0 5.4E-06 1.2E-10 85.7 5.2 36 44-79 1-36 (493)
253 COG0445 GidA Flavin-dependent 98.0 1.7E-05 3.7E-10 79.1 8.1 150 41-237 2-158 (621)
254 PRK07846 mycothione reductase; 98.0 6.6E-05 1.4E-09 76.6 12.7 32 43-76 1-32 (451)
255 TIGR02731 phytoene_desat phyto 98.0 9E-06 1.9E-10 83.2 6.2 59 45-104 1-75 (453)
256 PRK06116 glutathione reductase 98.0 7.2E-05 1.6E-09 76.4 12.8 100 43-239 167-267 (450)
257 PTZ00363 rab-GDP dissociation 98.0 7E-06 1.5E-10 82.8 5.0 44 40-83 1-44 (443)
258 PRK06912 acoL dihydrolipoamide 98.0 8.8E-05 1.9E-09 75.9 13.2 101 43-239 170-270 (458)
259 PRK06467 dihydrolipoamide dehy 98.0 6.9E-05 1.5E-09 77.0 12.2 104 43-240 174-277 (471)
260 TIGR02733 desat_CrtD C-3',4' d 98.0 7.8E-06 1.7E-10 84.5 5.4 36 44-79 2-37 (492)
261 COG3634 AhpF Alkyl hydroperoxi 98.0 1.4E-05 2.9E-10 75.2 6.1 112 41-236 209-324 (520)
262 PLN02576 protoporphyrinogen ox 98.0 9.1E-06 2E-10 84.1 5.6 39 42-80 11-50 (496)
263 PRK05976 dihydrolipoamide dehy 97.9 0.00012 2.6E-09 75.3 13.3 103 43-239 180-283 (472)
264 COG3075 GlpB Anaerobic glycero 97.9 1.1E-05 2.4E-10 75.3 4.9 36 42-77 1-36 (421)
265 TIGR03452 mycothione_red mycot 97.9 0.00017 3.7E-09 73.6 14.1 32 43-76 2-33 (452)
266 TIGR02732 zeta_caro_desat caro 97.9 1.3E-05 2.7E-10 82.3 5.8 60 45-105 1-76 (474)
267 TIGR01424 gluta_reduc_2 glutat 97.9 0.00011 2.3E-09 75.1 12.5 100 43-239 166-265 (446)
268 TIGR01421 gluta_reduc_1 glutat 97.9 9.5E-05 2.1E-09 75.5 11.9 101 43-239 166-267 (450)
269 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.2E-05 2.7E-10 79.2 5.1 36 44-79 2-37 (377)
270 TIGR02734 crtI_fam phytoene de 97.9 1E-05 2.2E-10 83.9 4.5 34 46-79 1-34 (502)
271 PLN02507 glutathione reductase 97.9 0.00014 3E-09 75.2 12.7 100 43-239 203-302 (499)
272 TIGR03315 Se_ygfK putative sel 97.9 1.3E-05 2.8E-10 87.7 5.2 37 42-78 536-572 (1012)
273 PRK07845 flavoprotein disulfid 97.9 0.00016 3.4E-09 74.2 12.7 100 43-239 177-276 (466)
274 PF01593 Amino_oxidase: Flavin 97.9 5.4E-05 1.2E-09 76.3 9.1 47 187-240 222-268 (450)
275 KOG3923 D-aspartate oxidase [A 97.9 0.0021 4.5E-08 59.7 18.1 39 42-80 2-47 (342)
276 PRK14989 nitrite reductase sub 97.9 7.2E-05 1.6E-09 81.6 10.4 36 43-78 3-42 (847)
277 PRK08010 pyridine nucleotide-d 97.8 0.00021 4.5E-09 72.9 13.0 99 43-239 158-256 (441)
278 TIGR03385 CoA_CoA_reduc CoA-di 97.8 0.00019 4.2E-09 72.8 12.4 98 43-238 137-234 (427)
279 PRK07846 mycothione reductase; 97.8 0.00017 3.8E-09 73.6 12.0 35 43-77 166-200 (451)
280 TIGR02374 nitri_red_nirB nitri 97.8 7.8E-05 1.7E-09 81.2 9.2 33 46-78 1-36 (785)
281 PRK09564 coenzyme A disulfide 97.8 0.00025 5.4E-09 72.4 12.3 35 43-77 149-183 (444)
282 PLN02785 Protein HOTHEAD 97.8 4.1E-05 8.8E-10 80.3 6.5 66 12-78 22-89 (587)
283 PRK14694 putative mercuric red 97.8 0.00026 5.6E-09 72.7 12.3 98 43-239 178-275 (468)
284 COG3486 IucD Lysine/ornithine 97.8 7.6E-05 1.7E-09 72.1 7.7 157 39-239 1-159 (436)
285 COG0562 Glf UDP-galactopyranos 97.8 2.9E-05 6.3E-10 72.5 4.7 36 44-79 2-37 (374)
286 PRK14727 putative mercuric red 97.8 0.0003 6.4E-09 72.5 12.6 98 43-239 188-285 (479)
287 TIGR02374 nitri_red_nirB nitri 97.8 0.00021 4.5E-09 77.9 12.0 98 44-237 141-238 (785)
288 COG1148 HdrA Heterodisulfide r 97.8 3E-05 6.6E-10 76.0 4.9 38 42-79 123-160 (622)
289 COG1252 Ndh NADH dehydrogenase 97.8 0.00016 3.5E-09 71.4 10.0 37 42-78 2-40 (405)
290 PRK06567 putative bifunctional 97.7 2.9E-05 6.2E-10 83.8 4.8 35 42-76 382-416 (1028)
291 PF00732 GMC_oxred_N: GMC oxid 97.7 2.8E-05 6.1E-10 74.7 4.4 35 44-78 1-36 (296)
292 TIGR01316 gltA glutamate synth 97.7 4E-05 8.6E-10 78.2 5.5 38 41-78 131-168 (449)
293 TIGR01438 TGR thioredoxin and 97.7 0.00041 8.9E-09 71.4 12.9 102 43-239 180-281 (484)
294 PTZ00052 thioredoxin reductase 97.7 0.00035 7.5E-09 72.3 12.3 98 44-239 183-280 (499)
295 TIGR01423 trypano_reduc trypan 97.7 0.00034 7.4E-09 71.9 12.0 100 43-239 187-290 (486)
296 PRK13512 coenzyme A disulfide 97.7 0.00035 7.5E-09 71.1 12.0 34 44-77 149-182 (438)
297 COG0446 HcaD Uncharacterized N 97.7 0.00034 7.3E-09 70.3 11.8 98 44-237 137-237 (415)
298 PRK12769 putative oxidoreducta 97.7 4.2E-05 9E-10 81.8 5.2 37 42-78 326-362 (654)
299 PRK02106 choline dehydrogenase 97.7 4.2E-05 9.2E-10 80.3 5.2 38 40-77 2-40 (560)
300 KOG2311 NAD/FAD-utilizing prot 97.7 0.00016 3.4E-09 70.9 8.4 36 41-76 26-61 (679)
301 TIGR03452 mycothione_red mycot 97.7 0.00047 1E-08 70.4 12.4 35 43-77 169-203 (452)
302 PRK06292 dihydrolipoamide dehy 97.7 0.00058 1.3E-08 70.0 13.0 37 42-78 168-204 (460)
303 PTZ00188 adrenodoxin reductase 97.7 5.1E-05 1.1E-09 76.4 5.0 38 42-79 38-76 (506)
304 PRK12775 putative trifunctiona 97.7 4.9E-05 1.1E-09 84.5 5.2 38 42-79 429-466 (1006)
305 PRK13748 putative mercuric red 97.6 0.00044 9.5E-09 72.8 12.1 98 43-239 270-367 (561)
306 PRK05329 anaerobic glycerol-3- 97.6 5.6E-05 1.2E-09 75.8 5.0 34 43-76 2-35 (422)
307 PF13434 K_oxygenase: L-lysine 97.6 0.0011 2.4E-08 64.8 13.8 140 41-235 188-339 (341)
308 PRK12810 gltD glutamate syntha 97.6 6.4E-05 1.4E-09 77.2 5.4 37 42-78 142-178 (471)
309 PRK14989 nitrite reductase sub 97.6 0.00042 9.1E-09 75.7 11.8 99 44-238 146-246 (847)
310 PRK12778 putative bifunctional 97.6 5.9E-05 1.3E-09 82.0 5.2 37 42-78 430-466 (752)
311 KOG1276 Protoporphyrinogen oxi 97.6 6.7E-05 1.4E-09 72.7 4.7 65 42-107 10-95 (491)
312 PTZ00058 glutathione reductase 97.6 0.00062 1.3E-08 71.0 11.9 100 43-238 237-337 (561)
313 PRK11749 dihydropyrimidine deh 97.6 7.8E-05 1.7E-09 76.3 5.2 38 41-78 138-175 (457)
314 PRK12814 putative NADPH-depend 97.5 0.00011 2.4E-09 78.4 5.3 37 42-78 192-228 (652)
315 TIGR01318 gltD_gamma_fam gluta 97.5 0.00012 2.6E-09 75.0 5.2 37 42-78 140-176 (467)
316 PRK12809 putative oxidoreducta 97.4 0.00015 3.3E-09 77.2 5.3 37 42-78 309-345 (639)
317 COG1206 Gid NAD(FAD)-utilizing 97.4 0.00066 1.4E-08 63.7 8.6 35 43-77 3-37 (439)
318 TIGR03378 glycerol3P_GlpB glyc 97.4 0.0002 4.3E-09 71.2 5.6 34 44-77 1-34 (419)
319 TIGR03197 MnmC_Cterm tRNA U-34 97.4 0.00099 2.1E-08 66.5 10.6 62 150-238 130-191 (381)
320 PTZ00318 NADH dehydrogenase-li 97.4 0.0013 2.7E-08 66.8 11.3 93 44-237 174-280 (424)
321 PTZ00153 lipoamide dehydrogena 97.4 0.0021 4.6E-08 68.2 13.0 36 43-78 312-347 (659)
322 PRK12770 putative glutamate sy 97.4 0.00023 5E-09 70.2 5.6 38 41-78 16-53 (352)
323 COG3573 Predicted oxidoreducta 97.4 0.00025 5.4E-09 66.6 5.3 40 41-80 3-42 (552)
324 TIGR03140 AhpF alkyl hydropero 97.3 0.0018 4E-08 67.2 11.9 34 43-76 352-385 (515)
325 TIGR03862 flavo_PP4765 unchara 97.3 0.00048 1E-08 67.9 7.1 69 153-248 84-163 (376)
326 KOG0685 Flavin-containing amin 97.3 0.00016 3.5E-09 71.1 3.7 40 41-80 19-59 (498)
327 TIGR01292 TRX_reduct thioredox 97.3 0.0021 4.5E-08 61.6 11.4 34 43-76 141-174 (300)
328 PLN02546 glutathione reductase 97.3 0.0017 3.8E-08 67.7 11.4 35 43-77 252-286 (558)
329 PRK10262 thioredoxin reductase 97.3 0.0027 5.8E-08 61.8 12.1 34 43-76 146-179 (321)
330 COG0493 GltD NADPH-dependent g 97.3 0.0002 4.3E-09 72.4 4.2 37 43-79 123-159 (457)
331 PF06100 Strep_67kDa_ant: Stre 97.3 0.0066 1.4E-07 60.9 14.6 37 43-79 2-42 (500)
332 KOG2960 Protein involved in th 97.3 0.00075 1.6E-08 59.4 7.1 44 43-89 76-121 (328)
333 COG2303 BetA Choline dehydroge 97.3 0.00024 5.2E-09 74.0 4.9 38 40-77 4-41 (542)
334 TIGR01317 GOGAT_sm_gam glutama 97.3 0.0003 6.5E-09 72.4 5.1 37 42-78 142-178 (485)
335 PRK12771 putative glutamate sy 97.3 0.00032 7E-09 73.7 5.3 37 42-78 136-172 (564)
336 KOG4716 Thioredoxin reductase 97.3 0.01 2.2E-07 56.2 14.2 46 41-87 17-62 (503)
337 COG2907 Predicted NAD/FAD-bind 97.2 0.00032 7E-09 66.3 4.3 38 42-80 7-44 (447)
338 PRK13984 putative oxidoreducta 97.1 0.0006 1.3E-08 72.4 5.1 37 42-78 282-318 (604)
339 TIGR01810 betA choline dehydro 97.0 0.00051 1.1E-08 71.8 4.1 33 45-77 1-34 (532)
340 PRK15317 alkyl hydroperoxide r 97.0 0.0052 1.1E-07 64.0 11.5 35 43-77 351-385 (517)
341 COG1252 Ndh NADH dehydrogenase 97.0 0.0024 5.2E-08 63.2 8.4 59 156-243 210-269 (405)
342 PRK12770 putative glutamate sy 97.0 0.0047 1E-07 60.9 9.9 33 44-76 173-206 (352)
343 TIGR03377 glycerol3P_GlpA glyc 96.9 0.032 7E-07 58.1 16.3 75 150-245 123-199 (516)
344 KOG1800 Ferredoxin/adrenodoxin 96.9 0.0011 2.3E-08 63.6 4.5 36 43-78 20-57 (468)
345 TIGR02352 thiamin_ThiO glycine 96.8 0.052 1.1E-06 52.9 16.2 63 149-238 131-194 (337)
346 KOG0399 Glutamate synthase [Am 96.8 0.00096 2.1E-08 71.6 3.9 37 42-78 1784-1820(2142)
347 TIGR01316 gltA glutamate synth 96.8 0.011 2.3E-07 60.5 10.9 34 43-76 272-305 (449)
348 KOG3851 Sulfide:quinone oxidor 96.7 0.0012 2.5E-08 61.9 3.1 37 41-77 37-75 (446)
349 KOG1238 Glucose dehydrogenase/ 96.6 0.0025 5.4E-08 65.5 5.0 38 41-78 55-93 (623)
350 TIGR03169 Nterm_to_SelD pyridi 96.6 0.018 3.9E-07 57.0 11.0 50 158-237 194-243 (364)
351 TIGR03143 AhpF_homolog putativ 96.5 0.018 3.9E-07 60.5 11.0 34 43-76 143-176 (555)
352 KOG4254 Phytoene desaturase [C 96.5 0.0021 4.6E-08 62.9 3.6 36 41-76 12-47 (561)
353 PRK12831 putative oxidoreducta 96.4 0.031 6.8E-07 57.3 11.7 34 43-76 281-314 (464)
354 KOG1336 Monodehydroascorbate/f 96.4 0.032 6.9E-07 55.5 11.0 100 43-238 213-314 (478)
355 PF01210 NAD_Gly3P_dh_N: NAD-d 96.4 0.0037 7.9E-08 54.0 3.9 32 45-76 1-32 (157)
356 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.0048 1E-07 54.6 4.2 33 45-77 1-33 (180)
357 PRK11749 dihydropyrimidine deh 96.2 0.031 6.8E-07 57.2 10.3 34 43-76 273-307 (457)
358 PF00996 GDI: GDP dissociation 96.0 0.0078 1.7E-07 60.4 4.8 40 40-79 1-40 (438)
359 PRK05675 sdhA succinate dehydr 96.0 0.23 5E-06 52.3 15.7 64 155-239 126-191 (570)
360 KOG2495 NADH-dehydrogenase (ub 95.9 0.087 1.9E-06 51.7 11.0 38 39-76 51-88 (491)
361 PRK12810 gltD glutamate syntha 95.9 0.077 1.7E-06 54.6 11.3 34 43-76 281-315 (471)
362 PRK12778 putative bifunctional 95.8 0.087 1.9E-06 57.5 12.0 34 43-76 570-604 (752)
363 KOG1336 Monodehydroascorbate/f 95.8 0.032 7E-07 55.4 7.5 37 190-235 143-179 (478)
364 PRK12814 putative NADPH-depend 95.7 0.095 2.1E-06 56.2 11.8 34 43-76 323-357 (652)
365 PRK07819 3-hydroxybutyryl-CoA 95.7 0.011 2.4E-07 56.4 4.3 35 44-78 6-40 (286)
366 PRK07530 3-hydroxybutyryl-CoA 95.7 0.012 2.5E-07 56.5 4.4 36 42-77 3-38 (292)
367 KOG1346 Programmed cell death 95.7 0.042 9.1E-07 53.5 7.8 48 190-244 409-458 (659)
368 TIGR01372 soxA sarcosine oxida 95.7 0.11 2.4E-06 58.4 12.4 34 43-76 317-351 (985)
369 PRK06249 2-dehydropantoate 2-r 95.6 0.015 3.2E-07 56.4 4.8 35 42-76 4-38 (313)
370 PRK07066 3-hydroxybutyryl-CoA 95.6 0.015 3.2E-07 56.2 4.7 34 44-77 8-41 (321)
371 COG1251 NirB NAD(P)H-nitrite r 95.6 0.04 8.8E-07 57.6 7.9 34 43-76 145-178 (793)
372 PRK06129 3-hydroxyacyl-CoA deh 95.6 0.013 2.8E-07 56.6 4.2 33 45-77 4-36 (308)
373 PRK02705 murD UDP-N-acetylmura 95.5 0.016 3.4E-07 59.5 4.5 34 45-78 2-35 (459)
374 PRK01438 murD UDP-N-acetylmura 95.5 0.017 3.7E-07 59.6 4.8 34 43-76 16-49 (480)
375 KOG2495 NADH-dehydrogenase (ub 95.4 0.1 2.3E-06 51.2 9.3 47 190-243 289-336 (491)
376 TIGR02734 crtI_fam phytoene de 95.4 3.2 7E-05 43.0 21.4 63 155-243 219-282 (502)
377 PF02558 ApbA: Ketopantoate re 95.3 0.022 4.8E-07 48.6 4.3 31 46-76 1-31 (151)
378 KOG0405 Pyridine nucleotide-di 95.3 0.16 3.6E-06 48.5 10.2 35 41-75 18-52 (478)
379 COG0569 TrkA K+ transport syst 95.3 0.021 4.5E-07 52.4 4.2 34 45-78 2-35 (225)
380 TIGR03467 HpnE squalene-associ 95.1 0.83 1.8E-05 45.8 15.7 44 188-237 211-254 (419)
381 PRK14106 murD UDP-N-acetylmura 95.0 0.028 6.1E-07 57.4 4.9 35 42-76 4-38 (450)
382 PRK08293 3-hydroxybutyryl-CoA 95.0 0.028 6E-07 53.7 4.4 34 44-77 4-37 (287)
383 PRK09260 3-hydroxybutyryl-CoA 95.0 0.026 5.7E-07 54.0 4.1 33 45-77 3-35 (288)
384 PF03721 UDPG_MGDP_dh_N: UDP-g 94.9 0.025 5.4E-07 50.2 3.4 33 45-77 2-34 (185)
385 COG3486 IucD Lysine/ornithine 94.9 0.54 1.2E-05 46.2 12.5 48 188-237 292-340 (436)
386 PRK06035 3-hydroxyacyl-CoA deh 94.7 0.036 7.8E-07 53.1 4.2 34 44-77 4-37 (291)
387 PLN02545 3-hydroxybutyryl-CoA 94.6 0.042 9E-07 52.8 4.4 34 44-77 5-38 (295)
388 PRK05708 2-dehydropantoate 2-r 94.6 0.045 9.8E-07 52.8 4.6 33 44-76 3-35 (305)
389 PRK06130 3-hydroxybutyryl-CoA 94.5 0.044 9.6E-07 53.0 4.5 34 44-77 5-38 (311)
390 PRK12769 putative oxidoreducta 94.5 0.24 5.1E-06 53.2 10.4 35 43-77 468-503 (654)
391 TIGR01318 gltD_gamma_fam gluta 94.5 0.3 6.4E-06 50.2 10.7 35 43-77 282-317 (467)
392 PRK12779 putative bifunctional 94.3 0.42 9.1E-06 53.3 11.9 34 43-76 447-480 (944)
393 PRK06522 2-dehydropantoate 2-r 94.3 0.049 1.1E-06 52.4 4.2 32 45-76 2-33 (304)
394 PRK08268 3-hydroxy-acyl-CoA de 94.3 0.053 1.1E-06 56.1 4.6 36 43-78 7-42 (507)
395 PRK12921 2-dehydropantoate 2-r 94.2 0.056 1.2E-06 52.0 4.5 30 45-74 2-31 (305)
396 TIGR01470 cysG_Nterm siroheme 94.2 0.074 1.6E-06 48.0 4.9 33 43-75 9-41 (205)
397 PRK05808 3-hydroxybutyryl-CoA 94.2 0.056 1.2E-06 51.5 4.3 33 45-77 5-37 (282)
398 PRK06719 precorrin-2 dehydroge 94.2 0.073 1.6E-06 45.8 4.6 32 42-73 12-43 (157)
399 PF13241 NAD_binding_7: Putati 94.1 0.038 8.3E-07 43.9 2.5 35 42-76 6-40 (103)
400 PRK07531 bifunctional 3-hydrox 94.1 0.059 1.3E-06 55.7 4.5 33 45-77 6-38 (495)
401 PRK08229 2-dehydropantoate 2-r 94.0 0.065 1.4E-06 52.5 4.6 31 45-75 4-34 (341)
402 TIGR02354 thiF_fam2 thiamine b 94.0 0.081 1.8E-06 47.6 4.7 34 42-75 20-54 (200)
403 PF01262 AlaDh_PNT_C: Alanine 94.0 0.07 1.5E-06 46.5 4.2 35 42-76 19-53 (168)
404 PRK14618 NAD(P)H-dependent gly 94.0 0.074 1.6E-06 51.9 4.8 32 45-76 6-37 (328)
405 PRK11064 wecC UDP-N-acetyl-D-m 93.9 0.059 1.3E-06 54.3 4.1 34 44-77 4-37 (415)
406 COG0492 TrxB Thioredoxin reduc 93.9 0.64 1.4E-05 44.7 11.0 37 42-78 142-178 (305)
407 PRK06718 precorrin-2 dehydroge 93.8 0.092 2E-06 47.3 4.8 34 42-75 9-42 (202)
408 KOG2304 3-hydroxyacyl-CoA dehy 93.8 0.074 1.6E-06 47.6 3.9 38 40-77 8-45 (298)
409 PF13738 Pyr_redox_3: Pyridine 93.7 0.072 1.6E-06 47.7 3.9 35 42-76 166-200 (203)
410 PRK05329 anaerobic glycerol-3- 93.7 0.49 1.1E-05 47.7 10.0 37 359-395 381-418 (422)
411 PRK14619 NAD(P)H-dependent gly 93.5 0.095 2.1E-06 50.6 4.6 35 43-77 4-38 (308)
412 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.4 0.08 1.7E-06 54.6 4.1 35 44-78 6-40 (503)
413 PRK14620 NAD(P)H-dependent gly 93.3 0.097 2.1E-06 51.0 4.4 32 45-76 2-33 (326)
414 TIGR00518 alaDH alanine dehydr 93.3 0.096 2.1E-06 51.9 4.3 34 43-76 167-200 (370)
415 PF01488 Shikimate_DH: Shikima 93.3 0.14 3.1E-06 42.8 4.8 35 42-76 11-46 (135)
416 cd05292 LDH_2 A subgroup of L- 93.3 0.1 2.2E-06 50.4 4.4 33 45-77 2-36 (308)
417 PF13478 XdhC_C: XdhC Rossmann 93.3 0.083 1.8E-06 44.2 3.2 32 46-77 1-32 (136)
418 TIGR03315 Se_ygfK putative sel 93.3 0.85 1.9E-05 50.9 11.8 35 42-76 665-701 (1012)
419 PRK04148 hypothetical protein; 93.3 0.07 1.5E-06 44.3 2.7 33 44-77 18-50 (134)
420 TIGR02732 zeta_caro_desat caro 93.2 9.3 0.0002 39.3 18.9 32 359-393 442-473 (474)
421 cd01080 NAD_bind_m-THF_DH_Cycl 93.2 0.12 2.6E-06 45.0 4.3 35 41-75 42-77 (168)
422 KOG2755 Oxidoreductase [Genera 93.1 0.072 1.6E-06 48.9 2.8 33 45-77 1-35 (334)
423 TIGR01763 MalateDH_bact malate 93.1 0.13 2.8E-06 49.5 4.8 34 44-77 2-36 (305)
424 PF02254 TrkA_N: TrkA-N domain 93.1 0.14 3E-06 41.4 4.3 32 46-77 1-32 (116)
425 PLN02852 ferredoxin-NADP+ redu 93.1 1.2 2.5E-05 45.9 11.8 23 43-65 166-188 (491)
426 PRK09424 pntA NAD(P) transhydr 93.0 0.096 2.1E-06 53.8 3.9 35 43-77 165-199 (509)
427 PTZ00082 L-lactate dehydrogena 92.9 0.15 3.3E-06 49.4 5.0 37 42-78 5-42 (321)
428 PRK07417 arogenate dehydrogena 92.9 0.11 2.4E-06 49.4 4.0 32 45-76 2-33 (279)
429 PF03446 NAD_binding_2: NAD bi 92.9 0.13 2.9E-06 44.5 4.2 34 44-77 2-35 (163)
430 COG0446 HcaD Uncharacterized N 92.9 0.61 1.3E-05 46.6 9.6 34 46-79 1-36 (415)
431 PF00899 ThiF: ThiF family; I 92.9 0.13 2.8E-06 43.0 3.9 34 43-76 2-36 (135)
432 PRK15116 sulfur acceptor prote 92.8 0.16 3.4E-06 47.8 4.7 36 42-77 29-65 (268)
433 PRK00094 gpsA NAD(P)H-dependen 92.8 0.13 2.9E-06 49.9 4.4 32 45-76 3-34 (325)
434 TIGR03026 NDP-sugDHase nucleot 92.7 0.11 2.4E-06 52.4 3.9 33 45-77 2-34 (411)
435 PRK00066 ldh L-lactate dehydro 92.6 0.18 3.9E-06 48.8 5.0 37 41-77 4-42 (315)
436 COG5044 MRS6 RAB proteins gera 92.6 0.2 4.4E-06 48.3 5.0 39 42-80 5-43 (434)
437 TIGR02733 desat_CrtD C-3',4' d 92.5 15 0.00031 38.0 19.7 61 155-237 232-294 (492)
438 PRK09853 putative selenate red 92.3 1.3 2.8E-05 49.3 11.6 34 43-76 668-703 (1019)
439 PRK12475 thiamine/molybdopteri 92.3 0.19 4.1E-06 49.1 4.7 35 42-76 23-58 (338)
440 PRK12775 putative trifunctiona 92.3 1.1 2.5E-05 50.4 11.4 34 42-75 570-604 (1006)
441 PRK11730 fadB multifunctional 92.3 0.13 2.9E-06 55.5 4.0 35 44-78 314-348 (715)
442 PF00056 Ldh_1_N: lactate/mala 92.2 0.21 4.5E-06 42.2 4.3 33 45-77 2-37 (141)
443 cd00401 AdoHcyase S-adenosyl-L 92.1 0.17 3.6E-06 50.7 4.2 35 43-77 202-236 (413)
444 PRK04308 murD UDP-N-acetylmura 92.1 0.21 4.5E-06 51.0 5.1 36 43-78 5-40 (445)
445 TIGR03378 glycerol3P_GlpB glyc 92.1 0.75 1.6E-05 46.1 8.7 69 152-243 260-330 (419)
446 TIGR02356 adenyl_thiF thiazole 92.1 0.24 5.2E-06 44.6 4.8 35 42-76 20-55 (202)
447 TIGR02437 FadB fatty oxidation 92.0 0.17 3.8E-06 54.6 4.4 36 43-78 313-348 (714)
448 PF00743 FMO-like: Flavin-bind 91.9 0.42 9.1E-06 49.8 7.1 36 42-77 182-217 (531)
449 PRK02472 murD UDP-N-acetylmura 91.9 0.22 4.7E-06 50.9 4.9 35 43-77 5-39 (447)
450 TIGR01505 tartro_sem_red 2-hyd 91.8 0.18 4E-06 48.2 4.0 33 45-77 1-33 (291)
451 PRK06223 malate dehydrogenase; 91.8 0.22 4.8E-06 48.0 4.6 34 44-77 3-37 (307)
452 TIGR01915 npdG NADPH-dependent 91.7 0.22 4.7E-06 45.5 4.1 32 45-76 2-34 (219)
453 TIGR02441 fa_ox_alpha_mit fatt 91.7 0.18 3.9E-06 54.6 4.1 35 44-78 336-370 (737)
454 PRK11199 tyrA bifunctional cho 91.7 0.23 5E-06 49.3 4.6 34 42-75 97-131 (374)
455 PRK07688 thiamine/molybdopteri 91.5 0.26 5.7E-06 48.1 4.7 35 42-76 23-58 (339)
456 COG1250 FadB 3-hydroxyacyl-CoA 91.4 0.24 5.1E-06 47.4 4.1 34 44-77 4-37 (307)
457 cd05291 HicDH_like L-2-hydroxy 91.3 0.26 5.6E-06 47.6 4.4 33 45-77 2-36 (306)
458 cd01487 E1_ThiF_like E1_ThiF_l 91.2 0.34 7.4E-06 42.5 4.8 32 45-76 1-33 (174)
459 PRK13984 putative oxidoreducta 91.2 1.6 3.6E-05 46.4 10.8 34 359-398 569-602 (604)
460 TIGR02964 xanthine_xdhC xanthi 91.2 0.28 6E-06 45.6 4.3 36 42-77 99-134 (246)
461 PRK08306 dipicolinate synthase 91.2 0.25 5.5E-06 47.3 4.2 35 43-77 152-186 (296)
462 TIGR02355 moeB molybdopterin s 91.0 0.32 6.9E-06 45.1 4.6 36 42-77 23-59 (240)
463 COG0771 MurD UDP-N-acetylmuram 91.0 0.24 5.2E-06 49.9 4.0 36 43-78 7-42 (448)
464 PF10727 Rossmann-like: Rossma 91.0 0.13 2.7E-06 42.5 1.6 34 41-74 8-41 (127)
465 PRK15461 NADH-dependent gamma- 90.9 0.27 5.8E-06 47.2 4.1 33 45-77 3-35 (296)
466 cd05311 NAD_bind_2_malic_enz N 90.9 0.33 7.1E-06 44.6 4.5 34 43-76 25-61 (226)
467 PRK15057 UDP-glucose 6-dehydro 90.9 0.28 6.2E-06 48.9 4.4 33 45-78 2-34 (388)
468 PRK01710 murD UDP-N-acetylmura 90.9 0.28 6.1E-06 50.2 4.4 34 44-77 15-48 (458)
469 PRK12549 shikimate 5-dehydroge 90.8 0.32 6.8E-06 46.4 4.5 34 43-76 127-161 (284)
470 PRK08644 thiamine biosynthesis 90.8 0.4 8.7E-06 43.5 4.9 35 42-76 27-62 (212)
471 cd01483 E1_enzyme_family Super 90.8 0.41 8.8E-06 40.4 4.7 33 45-77 1-34 (143)
472 PRK03369 murD UDP-N-acetylmura 90.7 0.27 5.9E-06 50.7 4.3 34 43-76 12-45 (488)
473 PRK12809 putative oxidoreducta 90.7 2.2 4.7E-05 45.7 11.2 35 43-77 451-486 (639)
474 PRK07502 cyclohexadienyl dehyd 90.7 0.3 6.5E-06 47.1 4.3 33 44-76 7-41 (307)
475 COG1748 LYS9 Saccharopine dehy 90.7 0.33 7.1E-06 47.9 4.5 34 44-77 2-36 (389)
476 PTZ00117 malate dehydrogenase; 90.6 0.36 7.7E-06 46.9 4.7 37 42-78 4-41 (319)
477 TIGR02440 FadJ fatty oxidation 90.5 0.26 5.5E-06 53.2 4.0 34 44-77 305-339 (699)
478 PRK11154 fadJ multifunctional 90.5 0.24 5.2E-06 53.6 3.7 34 44-77 310-344 (708)
479 PRK11559 garR tartronate semia 90.5 0.32 7E-06 46.6 4.3 33 45-77 4-36 (296)
480 PRK05690 molybdopterin biosynt 90.5 0.38 8.3E-06 44.7 4.6 35 42-76 31-66 (245)
481 cd05191 NAD_bind_amino_acid_DH 90.4 0.52 1.1E-05 35.9 4.5 32 43-74 23-55 (86)
482 cd01339 LDH-like_MDH L-lactate 90.4 0.32 6.9E-06 46.8 4.1 32 46-77 1-33 (300)
483 COG1004 Ugd Predicted UDP-gluc 90.4 0.33 7.1E-06 47.5 4.1 34 44-77 1-34 (414)
484 COG0686 Ald Alanine dehydrogen 90.3 0.25 5.5E-06 46.6 3.1 35 42-76 167-201 (371)
485 TIGR00561 pntA NAD(P) transhyd 90.3 0.34 7.4E-06 49.7 4.4 35 43-77 164-198 (511)
486 PRK04690 murD UDP-N-acetylmura 90.2 0.34 7.4E-06 49.8 4.4 35 43-77 8-42 (468)
487 TIGR02730 carot_isom carotene 90.2 0.99 2.1E-05 46.7 7.8 64 155-244 229-293 (493)
488 PRK00683 murD UDP-N-acetylmura 90.1 0.32 7E-06 49.1 4.1 34 44-77 4-37 (418)
489 PLN02695 GDP-D-mannose-3',5'-e 90.1 0.45 9.8E-06 47.2 5.1 37 40-76 18-55 (370)
490 PRK02006 murD UDP-N-acetylmura 90.1 0.37 8.1E-06 49.9 4.6 33 44-76 8-40 (498)
491 TIGR00872 gnd_rel 6-phosphoglu 90.1 0.32 6.8E-06 46.8 3.8 33 45-77 2-34 (298)
492 PTZ00142 6-phosphogluconate de 90.1 0.26 5.7E-06 50.3 3.4 34 45-78 3-36 (470)
493 TIGR00936 ahcY adenosylhomocys 90.0 0.36 7.9E-06 48.1 4.2 36 42-77 194-229 (406)
494 cd05293 LDH_1 A subgroup of L- 89.9 0.45 9.8E-06 45.9 4.7 35 43-77 3-39 (312)
495 cd01078 NAD_bind_H4MPT_DH NADP 89.9 0.46 9.9E-06 42.4 4.4 33 43-75 28-61 (194)
496 cd00757 ThiF_MoeB_HesA_family 89.8 0.49 1.1E-05 43.5 4.7 35 42-76 20-55 (228)
497 PRK08328 hypothetical protein; 89.8 0.49 1.1E-05 43.6 4.7 35 42-76 26-61 (231)
498 COG1893 ApbA Ketopantoate redu 89.7 0.37 8E-06 46.4 3.9 33 45-77 2-34 (307)
499 TIGR02853 spore_dpaA dipicolin 89.6 0.39 8.6E-06 45.8 4.0 35 43-77 151-185 (287)
500 COG1063 Tdh Threonine dehydrog 89.6 0.43 9.4E-06 47.0 4.4 33 45-77 171-204 (350)
No 1
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=354.11 Aligned_cols=364 Identities=31% Similarity=0.511 Sum_probs=263.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
+..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+.+++.+.+.+........+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~l-Gl~~~l~~~g~~~~~~~~~~~ 83 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRL-GIADEVRSAGLPVDYPTDIAY 83 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhc-ChHHHHHhhcCCccccCCceE
Confidence 5678999999999999999999999999999999988888889999999999999999 999999887765422122222
Q ss_pred eecCCCCccccccCCCccc---c-----ccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceE
Q 012845 121 CTSVTGPILGSVDHMQPQD---F-----EKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI 191 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i 191 (455)
.....|..+.......... . .....+.....++|..|.+.|.+.+.+. ++ +|
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v-------------------~i 144 (545)
T PRK06126 84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV-------------------TL 144 (545)
T ss_pred EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc-------------------eE
Confidence 2233444433322111100 0 0001233345688999999999999875 44 99
Q ss_pred EeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccc
Q 012845 192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL 271 (455)
Q Consensus 192 ~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (455)
+++++|++++.+++++.+++...++|. ..++.+|+||+|||.+|.||+++++.+.+..+....+...+...+.... .
T Consensus 145 ~~~~~v~~i~~~~~~v~v~~~~~~~g~--~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~-~ 221 (545)
T PRK06126 145 RYGHRLTDFEQDADGVTATVEDLDGGE--SLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAAL-V 221 (545)
T ss_pred EeccEEEEEEECCCeEEEEEEECCCCc--EEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHH-h
Confidence 999999999988888777766323342 3478999999999999999999998887777666655544433332221 1
Q ss_pred cCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeee
Q 012845 272 NERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVA 351 (455)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (455)
...+...++++.++....+...+ ....|.+. .... ......++++.+.+.+++.++.. ...++.....|.......
T Consensus 222 ~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~w~~~~~~a 297 (545)
T PRK06126 222 GHDPAWMYWLFNPDRRGVLVAID-GRDEWLFH-QLRG-GEDEFTIDDVDARAFVRRGVGED-IDYEVLSVVPWTGRRLVA 297 (545)
T ss_pred cCCCceEEEEECCCccEEEEEEC-CCCeEEEE-EecC-CCCCCCCCHHHHHHHHHHhcCCC-CCeEEEeecccchhheeh
Confidence 22344455555665554444433 23344443 1222 12223456677888888877633 344556666777766777
Q ss_pred cccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (455)
Q Consensus 352 ~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~ 431 (455)
+.|.. +||+|+|||||.|+|+.|||+|+||+||..|+++|...+++....++|+.|+++|+++++.+++.|+.++..+
T Consensus 298 ~~~~~--gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~ 375 (545)
T PRK06126 298 DSYRR--GRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPIAARNTDYARRNADAL 375 (545)
T ss_pred hhhcc--CCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 88864 9999999999999999999999999999999999998877666789999999999999999999999988766
Q ss_pred hc
Q 012845 432 ME 433 (455)
Q Consensus 432 ~~ 433 (455)
..
T Consensus 376 ~~ 377 (545)
T PRK06126 376 GS 377 (545)
T ss_pred cc
Confidence 53
No 2
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=2.6e-42 Score=340.54 Aligned_cols=352 Identities=26% Similarity=0.402 Sum_probs=236.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+.+ |+++.+.....+...+.......
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~~~~~~ 79 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRL-GLLDEILARGSPHEVMRIFFYDG 79 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHT-TEHHHHHHHSEEECEEEEEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccc-cchhhhhhhcccccceeeEeecc
Confidence 47999999999999999999999999999999999988889999999999999999 99999988764433222211111
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
..+.........................+.|..|++.|.+.+++.|+ +++++++|++++.
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~~~~ 139 (356)
T PF01494_consen 80 -ISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV-------------------DIRFGTRVVSIEQ 139 (356)
T ss_dssp -TTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE-------------------EEEESEEEEEEEE
T ss_pred -cCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh-------------------hheeeeecccccc
Confidence 00000000000000011101113335668899999999999999886 9999999999999
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCccc--ceeEEEEEecCCcccccccCCCceEEE
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDL--QKLVSVHFLSKDLGDYLLNERPGMLFF 280 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (455)
+++++.+.+....+ +..+++++|+||+|||.+|.+|++++......... ..++...... ..... ..+ ..+.
T Consensus 140 d~~~~~~~~~~~~~--g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~-~~~~ 212 (356)
T PF01494_consen 140 DDDGVTVVVRDGED--GEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDS-DLSDP---WED-HCFI 212 (356)
T ss_dssp ETTEEEEEEEETCT--CEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEEC-HSHTT---TSC-EEEE
T ss_pred cccccccccccccC--CceeEEEEeeeecccCcccchhhhccccccCcccccccccccccccc-ccccc---ccc-cccc
Confidence 88888877774333 33458899999999999999999998664332222 2222222211 11111 111 2333
Q ss_pred EEccCceEEEEeecC-CCCeEEEEeecCCCCC-CCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845 281 IFNTEAIGVLVAHDL-KEGEFILQVPFYPPQQ-NLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358 (455)
Q Consensus 281 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (455)
...+....++.+... ....+.+.++...+.. .......+.+.+.+...+.......++.....|++.....++|..
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 290 (356)
T PF01494_consen 213 YSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQRVADRWVK-- 290 (356)
T ss_dssp EEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEEEEESSSEE--
T ss_pred ccccccceeEeeccCCccceEEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 333333333444443 2234455555443322 222333445555555555444333455566677777777777765
Q ss_pred CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhH
Q 012845 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424 (455)
Q Consensus 359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s 424 (455)
+||+|||||||.|+|+.|||+|+||+||..|+++|.+..++....++|+.|+++|+++++.+++++
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~~~~~~~~~ 356 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPRARKAVQFD 356 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999999998777778899999999999999998864
No 3
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=5.8e-40 Score=340.58 Aligned_cols=349 Identities=28% Similarity=0.419 Sum_probs=248.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
+..+||+||||||+|+++|+.|+++|++|+||||.+.+...++++.+.+++++.|+++ |+.+.+...+.+... ..+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~---~~~ 83 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAI-GLADEVLPHTTPNHG---MRF 83 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHc-CChhHHHhhcccCCc---eEE
Confidence 3568999999999999999999999999999999998888888999999999999999 999998876655432 222
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEEEE
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 199 (455)
. +..|..+..++....... .......+.|..+++.|++.+.+. |+ +|+++++|++
T Consensus 84 ~-~~~g~~~~~~~~~~~~~~----g~~~~~~~~q~~le~~L~~~~~~~~gv-------------------~v~~g~~v~~ 139 (538)
T PRK06183 84 L-DAKGRCLAEIARPSTGEF----GWPRRNAFHQPLLEAVLRAGLARFPHV-------------------RVRFGHEVTA 139 (538)
T ss_pred E-cCCCCEEEEEcCCCCCCC----CCChhccCChHHHHHHHHHHHHhCCCc-------------------EEEcCCEEEE
Confidence 2 234444333321110000 011235678999999999998875 54 9999999999
Q ss_pred eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEE
Q 012845 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (455)
Q Consensus 200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (455)
++++++++.+++. +.++.++++++|+||+|||.+|.+|++++..+.+..+...++......... .......+
T Consensus 140 i~~~~~~v~v~~~---~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 211 (538)
T PRK06183 140 LTQDDDGVTVTLT---DADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIAND-----PLGGPHTY 211 (538)
T ss_pred EEEcCCeEEEEEE---cCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccC-----ccCCCceE
Confidence 9998888887776 322223478999999999999999999998777666666655444321111 11122234
Q ss_pred EEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCC-CHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF-SPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358 (455)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (455)
..+.+++...++..+ .+.+.|.+..... +....+ +.+.+.+++..+. ......++.....|.+.....+.|..
T Consensus 212 ~~~~~~~~~~~~p~~--~~~~r~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~-- 285 (538)
T PRK06183 212 QYCDPARPYTSVRLP--HGRRRWEFMLLPG-ETEEQLASPENVWRLLAPWG-PTPDDAELIRHAVYTFHARVADRWRS-- 285 (538)
T ss_pred EEECCCCCEEEEEcC--CCeEEEEEEeCCC-CChhhcCCHHHHHHHHHhhC-CCCcceEEEEEEeeeEccEEhhhhcc--
Confidence 445565555544443 3443333332221 112222 4556666666543 22333445555566666666777764
Q ss_pred CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (455)
Q Consensus 359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~ 431 (455)
+||+|+|||||.|+|+.|||+|+||+||..|+++|...+++.....+|+.|+++|++++..++..+..+.+.+
T Consensus 286 gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~ 358 (538)
T PRK06183 286 GRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVI 358 (538)
T ss_pred CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999998776666789999999999999999999988765543
No 4
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=5.2e-40 Score=338.56 Aligned_cols=349 Identities=28% Similarity=0.386 Sum_probs=245.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~ 121 (455)
.++||+||||||+||++|+.|+++|++|+||||.+.+....++.+|+++++++|+++ |+.+++.+.+.+......+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~~~--- 77 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDL-GVLDRVVAAGGLYPPMRIY--- 77 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHc-CcHHHHHhcCccccceeEE---
Confidence 458999999999999999999999999999999998888889999999999999999 9999998876554322111
Q ss_pred ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (455)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~ 201 (455)
...+... .....................+.|..+++.|.+.+.+.|+ +++++++|++++
T Consensus 78 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~i~ 136 (502)
T PRK06184 78 -RDDGSVA-ESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH-------------------RVEFGCELVGFE 136 (502)
T ss_pred -eCCceEE-EeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC-------------------EEEeCcEEEEEE
Confidence 1112111 1111000000000001123567899999999999998886 999999999999
Q ss_pred ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccc-eeEEEEEecCCcccccccCCCceEEE
Q 012845 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ-KLVSVHFLSKDLGDYLLNERPGMLFF 280 (455)
Q Consensus 202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (455)
.+++++.+++...+++ +++++|+||+|||.+|.+|+++++.+.+..+.. .++......... .+..++.
T Consensus 137 ~~~~~v~v~~~~~~~~----~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~ 205 (502)
T PRK06184 137 QDADGVTARVAGPAGE----ETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGL-------DRDAWHQ 205 (502)
T ss_pred EcCCcEEEEEEeCCCe----EEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecC-------CCcceEE
Confidence 8888877776422232 378999999999999999999998887776654 444333221111 1122222
Q ss_pred EEccC-ceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCee-EEEeeceEeceeeecccccCC
Q 012845 281 IFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDID-VIDIKPWVMHAEVAEKFLCCY 358 (455)
Q Consensus 281 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 358 (455)
+..+. +...+++.+. ...+.+.+.... ......+.+.+.+.+....+....... +.....|....+..+.|..
T Consensus 206 ~~~~~~~~~~~~p~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-- 280 (502)
T PRK06184 206 WPDGDMGMIALCPLPG-TDLFQIQAPLPP--GGEPDLSADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYRV-- 280 (502)
T ss_pred ccCCCCcEEEEEEccC-CCeEEEEEEcCC--CccCCCCHHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhcC--
Confidence 22332 3333333322 223444333222 222345677888888887764432222 2223455555666677764
Q ss_pred CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432 (455)
Q Consensus 359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 432 (455)
+||+|+|||||.++|+.|||||+||+||..|+++|+..+++ ....+|+.|+++|++++..+++.+..+++...
T Consensus 281 gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~ 353 (502)
T PRK06184 281 GRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG-APEALLDTYEEERRPVAAAVLGLSTELLDAIK 353 (502)
T ss_pred CcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988877 67789999999999999999999999887643
No 5
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=2e-40 Score=330.60 Aligned_cols=346 Identities=24% Similarity=0.321 Sum_probs=256.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~-~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~ 121 (455)
.+||+||||||+||++|+.|++.|++|+||||. ......++++.|+++++++|+++ |+.+.+...+.+......
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~i~~~~~~~~~~~~---- 76 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERL-GLWDRLEALGVPPLHVMV---- 76 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHc-CChhhhhhccCCceeeEE----
Confidence 579999999999999999999999999999998 45566779999999999999999 997788775553321111
Q ss_pred ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (455)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~ 201 (455)
....+.....++.... ........+.|..|.+.|.+.+.+.+. ++++++++|+.++
T Consensus 77 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~~~~~~~~------------------v~~~~~~~v~~~~ 132 (387)
T COG0654 77 VDDGGRRLLIFDAAEL------GRGALGYVVPRSDLLNALLEAARALPN------------------VTLRFGAEVEAVE 132 (387)
T ss_pred EecCCceeEEeccccc------CCCcceEEeEhHHHHHHHHHHHhhCCC------------------cEEEcCceEEEEE
Confidence 1112211111111111 112235778999999999999998773 4999999999999
Q ss_pred ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcC-CCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG-IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (455)
Q Consensus 202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (455)
.+++.+.+++.. +|. ++++|+||+|||.+|.+|++++ .......|.+.++....... .+.+...+.
T Consensus 133 ~~~~~v~v~l~~--dG~----~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~-------~~~~~~~~~ 199 (387)
T COG0654 133 QDGDGVTVTLSF--DGE----TLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPE-------EPHEGRAGE 199 (387)
T ss_pred EcCCceEEEEcC--CCc----EEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecC-------CCCCCeEEE
Confidence 999888877662 443 8899999999999999999999 55555577777777665543 234556666
Q ss_pred EEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCC--CCCeeEEE-eeceEeceeeecccccC
Q 012845 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVID-IKPWVMHAEVAEKFLCC 357 (455)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~ 357 (455)
.+.+.+...+++.+.......|..+ ....+....++.+.+...+.+.+++. ........ ...+++.......|..
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~- 277 (387)
T COG0654 200 RFTHAGPFALLPLPDNRSSVVWSLP-PGPAEDLQGLSDEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRR- 277 (387)
T ss_pred EecCCCceEEEecCCCceeEEEECC-hhhHHHHhcCCHHHHHHHHHHhcCcccccceEEEccccccccccchhhhheec-
Confidence 6777665555555433333334322 23344566777777888888888777 33333332 2346666677778875
Q ss_pred CCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME 433 (455)
Q Consensus 358 ~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 433 (455)
+|++|+|||||.|+|+.|||+|+|++||..|+++|.+.........+|+.|++.|++++..++..|....+.+..
T Consensus 278 -~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~ 352 (387)
T COG0654 278 -GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSA 352 (387)
T ss_pred -CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhHHHHHHHHHHHHhhhhcc
Confidence 899999999999999999999999999999999999987632228999999999999999999999966665553
No 6
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=1e-39 Score=335.81 Aligned_cols=339 Identities=27% Similarity=0.383 Sum_probs=239.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+++.+...+.+...+. +.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~---~~- 76 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMR-GLLERFLEKGRKLPSGH---FA- 76 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhc-CcHHHHHhhcccccceE---Ee-
Confidence 48999999999999999999999999999999998888889999999999999999 99999987665543221 11
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
...+. .+... .+ ........+.|..+++.|.+.+.+.|+ +++++++|++++.
T Consensus 77 ~~~~~----~~~~~-~~----~~~~~~~~i~q~~le~~L~~~~~~~gv-------------------~v~~~~~v~~i~~ 128 (493)
T PRK08244 77 GLDTR----LDFSA-LD----TSSNYTLFLPQAETEKVLEEHARSLGV-------------------EIFRGAEVLAVRQ 128 (493)
T ss_pred ccccc----CCccc-CC----CCCCcEEEecHHHHHHHHHHHHHHcCC-------------------eEEeCCEEEEEEE
Confidence 11110 01000 00 001123568899999999999988886 8999999999998
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEE
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (455)
+++++.+++... +| ..++++|+||+|||.+|.+|+++++.+.+..+....+...+.... ..+...+..+
T Consensus 129 ~~~~v~v~~~~~-~g---~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 197 (493)
T PRK08244 129 DGDGVEVVVRGP-DG---LRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKD-------PPPSSVLSLC 197 (493)
T ss_pred cCCeEEEEEEeC-Cc---cEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecC-------CCCcceeEEE
Confidence 888877766521 22 237899999999999999999999877666554443333322111 1122233334
Q ss_pred ccCceEEEEeecCCCCeEEEEeecC--CCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCc
Q 012845 283 NTEAIGVLVAHDLKEGEFILQVPFY--PPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360 (455)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (455)
.+++..++++. .++.+.+.+... .+.......+.+.+.+.+.+..+.............|+......+.|.. +|
T Consensus 198 ~~~g~~~~~P~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--gR 273 (493)
T PRK08244 198 TREGGVMIVPL--SGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYRS--GR 273 (493)
T ss_pred eCCceEEEEEC--CCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhcc--Cc
Confidence 55554444444 444444333211 1111223345677777777766543322122222344455556667764 89
Q ss_pred EEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429 (455)
Q Consensus 361 vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~ 429 (455)
|+|+|||||.++|+.|||+|+||+||..|+++|...+++.....+|+.|+++|+++...++..+.....
T Consensus 274 v~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~ 342 (493)
T PRK08244 274 IFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLRNTEVQTK 342 (493)
T ss_pred EEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999999998877777899999999999999998887655433
No 7
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=3.4e-40 Score=327.75 Aligned_cols=333 Identities=17% Similarity=0.213 Sum_probs=233.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~----~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~ 119 (455)
+||+||||||+|+++|+.|++.|++|+|||+.+... ..++++.|+++++++|+++ |+++.+.....+.....
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~--- 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI-DIWEELEKFVAEMQDIY--- 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC-CcHHHHHhhcCCCcEEE---
Confidence 689999999999999999999999999999975322 2468999999999999999 99999877665543321
Q ss_pred EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (455)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 199 (455)
+. +..+.....++.. ......+.+.|..|.+.|.+.+.+.+. +++++++++++
T Consensus 78 ~~-~~~g~~~~~~~~~--------~~~~~g~~v~r~~L~~~L~~~~~~~~~------------------v~~~~~~~v~~ 130 (374)
T PRK06617 78 VV-DNKASEILDLRND--------ADAVLGYVVKNSDFKKILLSKITNNPL------------------ITLIDNNQYQE 130 (374)
T ss_pred EE-ECCCceEEEecCC--------CCCCcEEEEEHHHHHHHHHHHHhcCCC------------------cEEECCCeEEE
Confidence 11 2233322222110 012224678999999999999988763 38899999999
Q ss_pred eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEE
Q 012845 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (455)
Q Consensus 200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (455)
+..+++++.+++. ++ ++++|+||+|||.+|.+|++++.......+ +..+....... ....+..+
T Consensus 131 i~~~~~~v~v~~~---~~-----~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~-------~~~~~~~~ 194 (374)
T PRK06617 131 VISHNDYSIIKFD---DK-----QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHE-------KPHENCAM 194 (374)
T ss_pred EEEcCCeEEEEEc---CC-----EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEecc-------CCCCCEEE
Confidence 9888888777664 44 689999999999999999999766544444 44444333211 12333445
Q ss_pred EEEccCceEEEEeecCCC-CeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE-eeceEeceeeecccccC
Q 012845 280 FIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFLCC 357 (455)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 357 (455)
..+.+.+...+++.+... ....|..+.. ....+...+.+.+.+.+....+.......... ...|++.....+.|..
T Consensus 195 ~~~~~~g~~~~lPl~~~~~~~~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~- 272 (374)
T PRK06617 195 EHFLPLGPFALLPLKDQYASSVIWSTSSD-QAALIVNLPVEEVRFLTQRNAGNSLGKITIDSEISSFPLKARIANRYFH- 272 (374)
T ss_pred EEecCCCCEEEeECCCCCeEEEEEeCCHH-HHHHHHcCCHHHHHHHHHHhhchhcCceeeccceeEEEeeeeeccceec-
Confidence 566666665555444322 1233433210 01112233345555555555543333332222 4456776666777764
Q ss_pred CCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME 433 (455)
Q Consensus 358 ~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 433 (455)
+||+|||||||.|+|+.|||+|+||+||.+|+++|.. ..+|+.|++.|++++..++..+..+.+.+++
T Consensus 273 -grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~-------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~ 340 (374)
T PRK06617 273 -NRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN-------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSN 340 (374)
T ss_pred -CCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC-------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999841 3689999999999999999999988777663
No 8
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=8.6e-40 Score=327.74 Aligned_cols=343 Identities=18% Similarity=0.187 Sum_probs=231.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------CcccccChhHHHHHHhhhchHHHHHhc-CCCccc
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQAHFINNRYALVFRKLDGLAEEIERS-QPPVDL 114 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~------~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~~ 114 (455)
.++||+||||||+|+++|+.|++.|++|+||||.+.+... .++..|+++++++|+++ |+++.+... ..+...
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l-Gl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL-GVWQDILARRASCYHG 80 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc-CCchhhhhhcCccccE
Confidence 3589999999999999999999999999999999875421 25567899999999999 999998764 334332
Q ss_pred ccceEEeecC-CCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEE
Q 012845 115 WRKFIYCTSV-TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREIL 192 (455)
Q Consensus 115 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~ 192 (455)
.. +.... .+.... + .... ..+.....+.|..|.+.|.+.+.+. ++ +++
T Consensus 81 ~~---~~~~~~~~~~~~--~---~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~~v-------------------~i~ 130 (400)
T PRK08013 81 ME---VWDKDSFGRIAF--D---DQSM---GYSHLGHIIENSVIHYALWQKAQQSSDI-------------------TLL 130 (400)
T ss_pred EE---EEeCCCCceEEE--c---cccc---CCCccEEEEEhHHHHHHHHHHHhcCCCc-------------------EEE
Confidence 11 11110 111110 0 0000 1122235689999999999999886 44 999
Q ss_pred eccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccccccc
Q 012845 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN 272 (455)
Q Consensus 193 ~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (455)
++++|++++.+++.+.+++. +|. ++++|+||+|||.+|.||++++.+..+..+.+..+...+....
T Consensus 131 ~~~~v~~i~~~~~~v~v~~~---~g~----~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~------- 196 (400)
T PRK08013 131 APAELQQVAWGENEAFLTLK---DGS----MLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEE------- 196 (400)
T ss_pred cCCeeEEEEecCCeEEEEEc---CCC----EEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccC-------
Confidence 99999999988888777765 664 7899999999999999999999877766555555444332211
Q ss_pred CCCceEEEEEccCceEEEEeecCCC-CeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE-eeceEeceee
Q 012845 273 ERPGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEV 350 (455)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~ 350 (455)
..+...+..+.+++...+++.+.+. ..+.|..+... .........+.+.+.+...++.......+.. ...|++....
T Consensus 197 ~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~ 275 (400)
T PRK08013 197 PHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEE-AQRMQQAPEEEFNRALAIAFDNRLGLCELESERQVFPLTGRY 275 (400)
T ss_pred CCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHH-HHHHHcCCHHHHHHHHHHHHhHhhCceEecCCccEEecceee
Confidence 1233344455555555554443322 23444332111 0111223444455554443332222222221 1245555556
Q ss_pred ecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc-CCCC--chhhhhHHHhhhHHHHHhHHhHHHH
Q 012845 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIAP--ASILNTYETERKPIAEFNTALSVQN 427 (455)
Q Consensus 351 ~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~-~~~~--~~al~~Y~~~r~~~~~~~~~~s~~~ 427 (455)
.+.|.. +||+|+|||||.++|+.|||+|+||+||..|+++|.+.+. +.+. ..+|+.|+++|++++..++..+...
T Consensus 276 ~~~~~~--grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~ 353 (400)
T PRK08013 276 ARQFAA--HRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGF 353 (400)
T ss_pred cccccC--CcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677764 9999999999999999999999999999999999987653 2222 2479999999999999999887776
Q ss_pred HHHHh
Q 012845 428 FRAAM 432 (455)
Q Consensus 428 ~~~~~ 432 (455)
.+.++
T Consensus 354 ~~l~~ 358 (400)
T PRK08013 354 RDLFA 358 (400)
T ss_pred HHHHc
Confidence 66554
No 9
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=2e-38 Score=332.10 Aligned_cols=365 Identities=23% Similarity=0.303 Sum_probs=247.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~ 119 (455)
..++||+||||||+||++|+.|++. |++|+||||.+.+...+++.+|+++++++|+++ |+++.+...+.+......+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~l-Gl~d~l~~~g~~~~~~~~~- 107 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAF-GFAERILKEAYWINETAFW- 107 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhc-cchHHHHhhcccccceEEE-
Confidence 4578999999999999999999995 999999999988888889999999999999999 9999998776554321111
Q ss_pred EeecCC-CCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845 120 YCTSVT-GPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (455)
Q Consensus 120 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~ 198 (455)
..... ...+.......... ....+.....++|..+++.|++.+.+.|.. +.++++++|+
T Consensus 108 -~~~~~~~~~i~r~~~~~~~~--~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~-----------------v~v~~g~~v~ 167 (634)
T PRK08294 108 -KPDPADPSTIVRTGRVQDTE--DGLSEFPHVIVNQARVHDYFLDVMRNSPTR-----------------LEPDYGREFV 167 (634)
T ss_pred -cCCCccccceeccccccccC--CCCCCCccEeeCHHHHHHHHHHHHHhcCCc-----------------eEEEeCcEEE
Confidence 10000 01111111100000 001122235688999999999999887641 3789999999
Q ss_pred EeeecCC---ceEEEEEeccC-CcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEec-CCcccccccC
Q 012845 199 SVSATDQ---CINVIASFLKE-GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDYLLNE 273 (455)
Q Consensus 199 ~i~~~~~---~~~v~~~~~~~-g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 273 (455)
+++.+++ .+.+++...++ .++.++++++|+||+|||++|.||+++|+.+.+..+...+....... ...+ .
T Consensus 168 ~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p-----~ 242 (634)
T PRK08294 168 DLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFP-----D 242 (634)
T ss_pred EEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCC-----C
Confidence 9987642 36676652211 02223589999999999999999999998888776666554444332 1111 1
Q ss_pred CCceEEEEEccCceEEEEeecCCCCe-EEEEeecC--CC--CCCCCCCCHHHHHHHHHHhhCC-CCCCeeEEEeeceEec
Q 012845 274 RPGMLFFIFNTEAIGVLVAHDLKEGE-FILQVPFY--PP--QQNLEDFSPEICEKLIFKLVGW-ELSDIDVIDIKPWVMH 347 (455)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 347 (455)
......+...+.+...++ |...+. +.+.+... .+ .......+.+.+.+.+++.++. ......+.....|.+.
T Consensus 243 ~~~~~~~~~~~~g~~~~~--P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~i~ 320 (634)
T PRK08294 243 IRLKCAIQSASEGSILLI--PREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYEVG 320 (634)
T ss_pred cceEEEEecCCCceEEEE--ECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEeccccc
Confidence 111111122233333333 434442 22222211 11 1123455677788888776543 2222223334455565
Q ss_pred eeeecccc--------cCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHH
Q 012845 348 AEVAEKFL--------CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEF 419 (455)
Q Consensus 348 ~~~~~~~~--------~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~ 419 (455)
.+..+.|. +..+||+|+|||||.++|..|||||++|+||..|+++|...+++....++|+.|+.+|+++++.
T Consensus 321 ~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a~~ 400 (634)
T PRK08294 321 QRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQE 400 (634)
T ss_pred ceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 66666662 1248999999999999999999999999999999999999888777889999999999999999
Q ss_pred hHHhHHHHHHHHhcc
Q 012845 420 NTALSVQNFRAAMEV 434 (455)
Q Consensus 420 ~~~~s~~~~~~~~~~ 434 (455)
+++.++...+.+...
T Consensus 401 li~~~~~~~~l~~~~ 415 (634)
T PRK08294 401 LIDFDREWSTMMAAP 415 (634)
T ss_pred HHHHHHHHHHHhccC
Confidence 999998887766543
No 10
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=2e-39 Score=325.87 Aligned_cols=346 Identities=20% Similarity=0.243 Sum_probs=233.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC-CCC----CCCcccccChhHHHHHHhhhchHHHHHhc-CCCccc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFS----THPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDL 114 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~-~~~----~~~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~~ 114 (455)
|..+||+||||||+|+++|+.|+++|++|+|+|+.. .+. ...++..|+++++++|+++ |+++++.+. ..+...
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~ 80 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL-GAWQGIEARRAAPYIA 80 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC-CchhhhhhhhCCcccE
Confidence 346899999999999999999999999999999963 221 2346788999999999999 999999764 444432
Q ss_pred ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (455)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~ 194 (455)
+. +. +..+ ......... . ...+.....+.+..|.+.|++.+.+.+ +++++++
T Consensus 81 ~~---~~-~~~~--~~~~~~~~~-~---~~~~~~g~~~~~~~l~~~L~~~~~~~~------------------~v~v~~~ 132 (405)
T PRK08850 81 ME---VW-EQDS--FARIEFDAE-S---MAQPDLGHIVENRVIQLALLEQVQKQD------------------NVTLLMP 132 (405)
T ss_pred EE---EE-eCCC--CceEEEecc-c---cCCCccEEEEEHHHHHHHHHHHHhcCC------------------CeEEEcC
Confidence 21 11 1111 111100000 0 001112345678889999999987753 1489999
Q ss_pred cEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCC
Q 012845 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274 (455)
Q Consensus 195 ~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
++|++++.+++.+.+++. +|+ ++++|+||+|||.+|.+|++++.+.....+.+..+...+.... ..
T Consensus 133 ~~v~~i~~~~~~~~v~~~---~g~----~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-------~~ 198 (405)
T PRK08850 133 ARCQSIAVGESEAWLTLD---NGQ----ALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD-------PH 198 (405)
T ss_pred CeeEEEEeeCCeEEEEEC---CCC----EEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC-------CC
Confidence 999999888887777765 665 7899999999999999999998876655554444444432211 22
Q ss_pred CceEEEEEccCceEEEEeecCCC-CeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE-eeceEeceeeec
Q 012845 275 PGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAE 352 (455)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 352 (455)
....+..+.+++...+++..... ..+.|..+... ...+...+.+.+.+.+.+.+.......++.. ...|++.....+
T Consensus 199 ~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 277 (405)
T PRK08850 199 NSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLR-AEALLAMSDEQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYAR 277 (405)
T ss_pred CCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHhhhhCcEEEcccccEEecceeecc
Confidence 33455566666655555443221 13334332111 1112233444455545544433222222221 224566556666
Q ss_pred ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc-CC--CCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIAEFNTALSVQNFR 429 (455)
Q Consensus 353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~-~~--~~~~al~~Y~~~r~~~~~~~~~~s~~~~~ 429 (455)
.|.. +||+|+|||||.++|+.|||+|+||+||..|+++|....+ +. ....+|+.|++.|++++..++..+....+
T Consensus 278 ~~~~--~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~ 355 (405)
T PRK08850 278 DFVR--ERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRD 355 (405)
T ss_pred cccc--CcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7764 9999999999999999999999999999999999988763 22 24689999999999999999999987776
Q ss_pred HHh
Q 012845 430 AAM 432 (455)
Q Consensus 430 ~~~ 432 (455)
.++
T Consensus 356 ~~~ 358 (405)
T PRK08850 356 LFS 358 (405)
T ss_pred HHC
Confidence 655
No 11
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2.3e-39 Score=323.06 Aligned_cols=342 Identities=17% Similarity=0.228 Sum_probs=233.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--C----CCcccccChhHHHHHHhhhchHHHHHhc-CCCcccc
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--T----HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW 115 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~--~----~~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~~~ 115 (455)
.+||+||||||+|+++|+.|++.|++|+|||+.+... . ..++..|+++++++|+++ |+++.+.+. ..+...+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~~~~~~~~~~~~~ 81 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL-GAWSSIVAMRVCPYKRL 81 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC-CCchhhhHhhCCccceE
Confidence 4799999999999999999999999999999875321 1 123458999999999999 999988653 3343222
Q ss_pred cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (455)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~ 195 (455)
..+ . .+.....+.. .... .+...+.+.+..|...|.+.+.+.+. +++++++
T Consensus 82 ~~~----~-~~~~~~~~~~---~~~~---~~~~g~~i~~~~l~~~L~~~~~~~~~------------------i~i~~~~ 132 (384)
T PRK08849 82 ETW----E-HPECRTRFHS---DELN---LDQLGYIVENRLIQLGLWQQFAQYPN------------------LTLMCPE 132 (384)
T ss_pred EEE----e-CCCceEEecc---cccC---CCccEEEEEcHHHHHHHHHHHHhCCC------------------eEEECCC
Confidence 111 1 1100001110 0000 01112446667899999998877532 4899999
Q ss_pred EEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCC
Q 012845 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (455)
Q Consensus 196 ~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (455)
+|++++.+++++.+++. +|. ++++|+||+|||.+|.+|++++.......+.+..+....... ...+
T Consensus 133 ~v~~~~~~~~~~~v~~~---~g~----~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~-------~~~~ 198 (384)
T PRK08849 133 KLADLEFSAEGNRVTLE---SGA----EIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETE-------QPQQ 198 (384)
T ss_pred ceeEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcC-------CCCC
Confidence 99999988888888776 665 889999999999999999999876666555554433332221 1123
Q ss_pred ceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccc
Q 012845 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFL 355 (455)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (455)
...+..+.+.+...+++.+.....++|...... .......+++.+.+.+.+.++......+......|++.....+.|.
T Consensus 199 ~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (384)
T PRK08849 199 DITWQQFTPSGPRSFLPLCGNQGSLVWYDSPKR-IKQLSAMNPEQLRSEILRHFPAELGEIKVLQHGSFPLTRRHAQQYV 277 (384)
T ss_pred CEEEEEeCCCCCEEEeEcCCCceEEEEECCHHH-HHHHHcCCHHHHHHHHHHHhhhhhCcEEeccceEeeccccccchhc
Confidence 344445555444444555443334444322100 0112234556666666666555444444444456666666677777
Q ss_pred cCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME 433 (455)
Q Consensus 356 ~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 433 (455)
. +|++|+|||||.|+|+.|||+|+||+||..|+++|.+ .+.+...+|+.|++.|+++...++..+..+.+.++.
T Consensus 278 ~--grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~--~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~ 351 (384)
T PRK08849 278 K--NNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEK--QGVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSN 351 (384)
T ss_pred c--CCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC
Confidence 5 9999999999999999999999999999999999864 233567899999999999999998888777665553
No 12
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=4e-39 Score=323.86 Aligned_cols=344 Identities=17% Similarity=0.198 Sum_probs=231.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--------CCCCcccccChhHHHHHHhhhchHHHHHhc-CCCcc
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--------STHPQAHFINNRYALVFRKLDGLAEEIERS-QPPVD 113 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~--------~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~ 113 (455)
.+||+||||||+|+++|+.|+++|++|+||||.+.. ....++..++++++++|+++ |+++.+.+. ..+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~ 80 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL-GAWDGIAARRASPYS 80 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC-ChhhhhhHhhCccce
Confidence 479999999999999999999999999999998631 12345678999999999999 999998753 33432
Q ss_pred cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEe
Q 012845 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (455)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~ 193 (455)
.. .+ .+..+.....++. .. ...+.....+.+..|.+.|.+.+.+.|+ ++++
T Consensus 81 ~~---~~-~~~~~~~~~~~~~---~~---~~~~~~g~~i~~~~l~~~L~~~~~~~gv-------------------~v~~ 131 (405)
T PRK05714 81 EM---QV-WDGSGTGQIHFSA---AS---VHAEVLGHIVENRVVQDALLERLHDSDI-------------------GLLA 131 (405)
T ss_pred eE---EE-EcCCCCceEEecc---cc---cCCCccEEEEEhHHHHHHHHHHHhcCCC-------------------EEEc
Confidence 21 11 1222211111110 00 0112223567888999999999988776 8999
Q ss_pred ccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccC
Q 012845 194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273 (455)
Q Consensus 194 ~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (455)
+++|++++.+++++.|++. +|. ++++|+||+|||.+|.+|++++.......+....+....... ..
T Consensus 132 ~~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~-------~~ 197 (405)
T PRK05714 132 NARLEQMRRSGDDWLLTLA---DGR----QLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCS-------EP 197 (405)
T ss_pred CCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcC-------CC
Confidence 9999999988888777765 664 789999999999999999999877655555544433332211 12
Q ss_pred CCceEEEEEccCceEEEEeecCCCC-eE---EEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCe-eEEEeeceEece
Q 012845 274 RPGMLFFIFNTEAIGVLVAHDLKEG-EF---ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHA 348 (455)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 348 (455)
.....+..+.+.+...+++.+.... .+ .|..+... .......+.+.+.+.+.+.++...... .......|++..
T Consensus 198 ~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 276 (405)
T PRK05714 198 HRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEE-AERLMALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQ 276 (405)
T ss_pred CCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHH-HHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEEecce
Confidence 2334445556666555555432222 22 12221110 011222344444444544443322211 111223456655
Q ss_pred eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc-CC--CCchhhhhHHHhhhHHHHHhHHhHH
Q 012845 349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIAEFNTALSV 425 (455)
Q Consensus 349 ~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~-~~--~~~~al~~Y~~~r~~~~~~~~~~s~ 425 (455)
...+.|.. +||+|||||||.|+|+.|||+|+||+||..|+++|.+... +. ....+|+.|++.|++++..++..++
T Consensus 277 ~~~~~~~~--~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~ 354 (405)
T PRK05714 277 RHAKRYVE--PGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAME 354 (405)
T ss_pred eehhhhcc--CCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667764 9999999999999999999999999999999999987653 21 2358999999999999999999999
Q ss_pred HHHHHHhc
Q 012845 426 QNFRAAME 433 (455)
Q Consensus 426 ~~~~~~~~ 433 (455)
.+.+.++.
T Consensus 355 ~~~~~~~~ 362 (405)
T PRK05714 355 GFERLFQA 362 (405)
T ss_pred HHHHHHCC
Confidence 88776663
No 13
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=5.8e-38 Score=326.48 Aligned_cols=346 Identities=23% Similarity=0.359 Sum_probs=239.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~ 121 (455)
.++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+.+++.+.+.+...... .
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~~---~ 97 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRL-GCGERMVDKGVSWNVGKV---F 97 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHc-CCcHHHHhhCceeeceeE---E
Confidence 568999999999999999999999999999999988777788999999999999999 999998876654322111 1
Q ss_pred ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (455)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~ 201 (455)
.. .+ ....++....... .......+.|..|++.|.+.+.+.+. ++++++++|++++
T Consensus 98 ~~-~~-~~~~~~~~~~~~~----~~~~~~~~~q~~le~~L~~~~~~~~~------------------v~v~~~~~v~~i~ 153 (547)
T PRK08132 98 LR-DE-EVYRFDLLPEPGH----RRPAFINLQQYYVEGYLVERAQALPN------------------IDLRWKNKVTGLE 153 (547)
T ss_pred eC-CC-eEEEecCCCCCCC----CCCceEecCHHHHHHHHHHHHHhCCC------------------cEEEeCCEEEEEE
Confidence 11 11 1111111110000 01123557899999999999987632 3899999999999
Q ss_pred ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEE
Q 012845 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281 (455)
Q Consensus 202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (455)
.+++++.+++... ++ ..++++|+||+|||.+|.+|+.++..+.+..+...++......... ......+++
T Consensus 154 ~~~~~v~v~~~~~-~g---~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~------~~~~~~~~~ 223 (547)
T PRK08132 154 QHDDGVTLTVETP-DG---PYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKAD------FPTERWFWF 223 (547)
T ss_pred EcCCEEEEEEECC-CC---cEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCC------CCCeeeEEE
Confidence 8888877766521 22 1368999999999999999999998877766555444433221110 011111221
Q ss_pred E---ccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845 282 F---NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358 (455)
Q Consensus 282 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (455)
. .++...++ .+...+.+.+..............+.+.+.+.+++.++.. ...++.....|.+.....+.|..
T Consensus 224 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~-- 298 (547)
T PRK08132 224 DPPFHPGQSVLL--HRQPDNVWRIDFQLGWDADPEAEKKPENVIPRVRALLGED-VPFELEWVSVYTFQCRRMDRFRH-- 298 (547)
T ss_pred eccCCCCcEEEE--EeCCCCeEEEEEecCCCCCchhhcCHHHHHHHHHHHcCCC-CCeeEEEEEeeeeeeeeeccccc--
Confidence 1 12222222 2333344433322111111112234566777777777632 23344445566777777888875
Q ss_pred CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHH
Q 012845 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (455)
Q Consensus 359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~ 430 (455)
+||+|+|||||.++|+.|||+|+||+||..|+++|...+++....++|+.|+++|+++++.+++.+......
T Consensus 299 gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~ 370 (547)
T PRK08132 299 GRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRSTDF 370 (547)
T ss_pred ccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999888777778999999999999999998887665443
No 14
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=5.8e-39 Score=323.93 Aligned_cols=350 Identities=21% Similarity=0.231 Sum_probs=230.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCcccccChhHHHHHHhhhchHHHHHhcCCCcccccce
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~--~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~ 118 (455)
..++||+||||||+|+++|+.|+++|++|+||||.+.+.. .++++.+++++++.|+++ |+++++...+.+... .
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~---~ 91 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGI-GVWEKILPQIGKFRQ---I 91 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHC-ChhhhhHhhcCCccE---E
Confidence 4568999999999999999999999999999999987643 366788999999999999 999998876555422 1
Q ss_pred EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (455)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~ 198 (455)
.+. +..+.....+... +.. .....+.+.+..|.+.|++.+.+.+. ++++++++|+
T Consensus 92 ~~~-~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~------------------v~i~~~~~v~ 146 (415)
T PRK07364 92 RLS-DADYPGVVKFQPT---DLG---TEALGYVGEHQVLLEALQEFLQSCPN------------------ITWLCPAEVV 146 (415)
T ss_pred EEE-eCCCCceeeeccc---cCC---CCccEEEEecHHHHHHHHHHHhcCCC------------------cEEEcCCeeE
Confidence 121 1122111111110 000 01111233344788889888877531 3899999999
Q ss_pred EeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceE
Q 012845 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (455)
Q Consensus 199 ~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (455)
+++.+++.+.+++. +++. ..++++|+||+|||.+|.+|+.++....+..+++..+........ ......
T Consensus 147 ~v~~~~~~~~v~~~--~~~~--~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 215 (415)
T PRK07364 147 SVEYQQDAATVTLE--IEGK--QQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEA-------PHNDIA 215 (415)
T ss_pred EEEecCCeeEEEEc--cCCc--ceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccC-------CCCCEE
Confidence 99888887777665 1221 136899999999999999999998877666666655544433221 112222
Q ss_pred EEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEE-EeeceEeceeeecccccC
Q 012845 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLCC 357 (455)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 357 (455)
+..+.+.+..++++.+.....+.|..+... .......+.+.+.+.+.+.++......... ....|++.....+.|.
T Consensus 216 ~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 292 (415)
T PRK07364 216 YERFWPSGPFAILPLPGNRCQIVWTAPHAQ-AKALLALPEAEFLAELQQRYGDQLGKLELLGDRFLFPVQLMQSDRYV-- 292 (415)
T ss_pred EEEecCCCCeEEeECCCCCEEEEEECCHHH-HHHHHCCCHHHHHHHHHHHhhhhhcCceecCCCceecchhhhhhhhc--
Confidence 323334444444444333333433322111 011223344455555555443322222222 1223454444455665
Q ss_pred CCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc-CCC--CchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIA--PASILNTYETERKPIAEFNTALSVQNFRAAME 433 (455)
Q Consensus 358 ~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~-~~~--~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 433 (455)
.+|++|||||||.++|+.|||+|+||+||..|+++|.+..+ +.+ ...+|+.|++.|+++...++..+....+.++.
T Consensus 293 ~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~ 371 (415)
T PRK07364 293 QHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSN 371 (415)
T ss_pred CCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 49999999999999999999999999999999999988753 222 24899999999999999999988877766653
No 15
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=5.2e-38 Score=320.47 Aligned_cols=333 Identities=25% Similarity=0.346 Sum_probs=236.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~-~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
..+||+||||||+|+++|+.|+++|++|+||||.+.+. ...++..+++++++.|+++ |+++.+.+.+.+.... .+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~l-Gl~~~l~~~~~~~~~~-~~~- 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQR-GIADRFLAQGQVAQVT-GFA- 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHc-CcHHHHHhcCCccccc-eee-
Confidence 46899999999999999999999999999999998754 3456788999999999999 9999998755433210 010
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
...+ +.. ... ........+.+..+++.|.+.+.+.|+ +++++++|+++
T Consensus 79 -----~~~~---~~~---~~~--~~~~~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~v 126 (488)
T PRK06834 79 -----ATRL---DIS---DFP--TRHNYGLALWQNHIERILAEWVGELGV-------------------PIYRGREVTGF 126 (488)
T ss_pred -----eEec---ccc---cCC--CCCCccccccHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEE
Confidence 0000 000 000 001123457888999999999998886 99999999999
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (455)
+.+++++.+++. +|. ++++|+||+|||.+|.+|+++++.+.+..+.+.++.......... . +..
T Consensus 127 ~~~~~~v~v~~~---~g~----~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~--------~-~~~ 190 (488)
T PRK06834 127 AQDDTGVDVELS---DGR----TLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEP--------E-WGV 190 (488)
T ss_pred EEcCCeEEEEEC---CCC----EEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCC--------C-cce
Confidence 998888777664 553 789999999999999999999998888777666555444322111 0 111
Q ss_pred EEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCc
Q 012845 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360 (455)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (455)
.+.+.+...+.... ..+.+.+.+....+ ......+.+.+.+.+.+.++.............|+......+.|.. +|
T Consensus 191 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~r~a~~~~~--gR 266 (488)
T PRK06834 191 HRDALGIHAFGRLE-DEGPVRVMVTEKQV-GATGEPTLDDLREALIAVYGTDYGIHSPTWISRFTDMARQAASYRD--GR 266 (488)
T ss_pred eeCCCceEEEeccC-CCCeEEEEEecCCC-CCCCCCCHHHHHHHHHHhhCCCCccccceeEEeccccceecccccC--Cc
Confidence 12222222222221 13333332222111 2223456667777777766544332223334456666677788875 99
Q ss_pred EEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429 (455)
Q Consensus 361 vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~ 429 (455)
|+|+|||||.++|+.|||||++|+||..|+++|...+++.....+|+.|+++|++....++..+..+..
T Consensus 267 V~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~ 335 (488)
T PRK06834 267 VLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLRNTMAQVA 335 (488)
T ss_pred EEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887778899999999999999999988766553
No 16
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=1.5e-38 Score=321.89 Aligned_cols=346 Identities=21% Similarity=0.260 Sum_probs=237.3
Q ss_pred cCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCC------------CCcccccChhHHHHHHhhhchHHHHHh
Q 012845 44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFST------------HPQAHFINNRYALVFRKLDGLAEEIER 107 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~----~g~~V~l~Er~~~~~~------------~~~~~~l~~~~~~~l~~~~gl~~~l~~ 107 (455)
+||+||||||+|+++|+.|++ .|++|+||||.+.+.. ..++..|+++++++|+.+ |+++.+..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l-G~~~~l~~ 79 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI-GAWDHIQS 79 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc-Cchhhhhh
Confidence 699999999999999999999 8999999999654432 246899999999999999 99999976
Q ss_pred cC-CCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCccccccccc
Q 012845 108 SQ-PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLL 186 (455)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~ 186 (455)
.. .+...+. +. +..+.....++... ..+.....+++..|.+.|.+.+.+.+.
T Consensus 80 ~~~~~~~~~~---~~-~~~~~~~~~~~~~~-------~~~~~~~~i~~~~l~~~L~~~~~~~~~---------------- 132 (437)
T TIGR01989 80 DRIQPFGRMQ---VW-DGCSLALIRFDRDN-------GKEDMACIIENDNIQNSLYNRLQEYNG---------------- 132 (437)
T ss_pred hcCCceeeEE---Ee-cCCCCceEEeecCC-------CCCceEEEEEHHHHHHHHHHHHHhCCC----------------
Confidence 43 3332211 11 11221111111100 012224568899999999999988651
Q ss_pred ccceEEeccEEEEeeec-------CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEE
Q 012845 187 QGREILMGHECVSVSAT-------DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV 259 (455)
Q Consensus 187 ~~~~i~~~~~v~~i~~~-------~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~ 259 (455)
++++++++++|++++.. ++++.+++. +|+ ++++|+||+|||.+|.+|+++++...+..|.+..+..
T Consensus 133 ~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~---~g~----~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~ 205 (437)
T TIGR01989 133 DNVKILNPARLISVTIPSKYPNDNSNWVHITLS---DGQ----VLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVA 205 (437)
T ss_pred CCeEEecCCeeEEEEeccccccCCCCceEEEEc---CCC----EEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEE
Confidence 01399999999999752 345666655 664 7899999999999999999999988888777766555
Q ss_pred EEecCCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhC---------
Q 012845 260 HFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG--------- 330 (455)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 330 (455)
...... ...++..+..|.+++...+++.+....++.|..+.. ....+...+++.+.+.+.+.++
T Consensus 206 ~v~~~~------~~~~~~~~~~f~~~g~~~~lPl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 278 (437)
T TIGR01989 206 TLKLEE------ATENDVAWQRFLPTGPIALLPLPDNNSTLVWSTSPE-EALRLLSLPPEDFVDALNAAFDLGYSDHPYS 278 (437)
T ss_pred EEEccc------CCCCCeEEEEECCCCCEEEeECCCCCEEEEEeCCHH-HHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence 443221 123445556667777666665543333444443211 1112223455555555544330
Q ss_pred ---------------CCC-C----------CeeEE--EeeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhh
Q 012845 331 ---------------WEL-S----------DIDVI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG 382 (455)
Q Consensus 331 ---------------~~~-~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~A 382 (455)
+.. + ...+. ....|++.....+.|.. +||+|+|||||.++|+.|||+|+|
T Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~rv~l~GDAAH~~~P~~GqG~n~~ 356 (437)
T TIGR01989 279 YLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYVT--KRVALVGDAAHRVHPLAGQGVNLG 356 (437)
T ss_pred cccccccccccccccccccccccccccCchhheeecccceeEEecccchhhccC--CCEEEEchhhcCCCCChhhhHHHH
Confidence 000 0 00111 11345565556667764 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHcCC-C--CchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845 383 VQDAHNLAWKIASVLKDI-A--PASILNTYETERKPIAEFNTALSVQNFRAAME 433 (455)
Q Consensus 383 l~da~~La~~L~~~~~~~-~--~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 433 (455)
|+||..|+++|.+..+.. + ...+|+.|++.|+++++.++..+....+.+..
T Consensus 357 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~ 410 (437)
T TIGR01989 357 FGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLHKLYAT 410 (437)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999876432 2 24799999999999999999999988777664
No 17
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=2.6e-38 Score=316.20 Aligned_cols=347 Identities=20% Similarity=0.216 Sum_probs=223.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
+.++||+||||||+|+++|+.|++.|++|+||||.+.+...+++..|+++++++|+++ |+++.+.+.+.... ..+..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~l-Gl~~~~~~~~~~~~--~~~~~ 79 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAM-GLLDDVFAAGGLRR--DAMRL 79 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHc-CCHHHHHhcccccc--cceEE
Confidence 4678999999999999999999999999999999998876667778999999999999 99999887553221 11111
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
..++..+...+...... ......+.|..|.+.|.+.+.+.+ +++++++++|+++
T Consensus 80 --~~~g~~~~~~~~~~~~~------~g~~~~i~r~~l~~~L~~~~~~~~------------------gv~i~~~~~v~~i 133 (388)
T PRK07045 80 --YHDKELIASLDYRSASA------LGYFILIPCEQLRRLLLAKLDGLP------------------NVRLRFETSIERI 133 (388)
T ss_pred --ecCCcEEEEecCCcccc------CCceEEccHHHHHHHHHHHHhcCC------------------CeeEEeCCEEEEE
Confidence 12344333222211000 111245789999999999986543 1499999999999
Q ss_pred eecCCce--EEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhc-CCCccCCcccceeEEEEEecCCcccccccCCCce
Q 012845 201 SATDQCI--NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (455)
Q Consensus 201 ~~~~~~~--~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (455)
+.++++. .+++. +|+ ++.+|+||+|||.+|.+|+++ +.......+....+......... .+..
T Consensus 134 ~~~~~~~~~~v~~~---~g~----~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 199 (388)
T PRK07045 134 ERDADGTVTSVTLS---DGE----RVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDS-------VREC 199 (388)
T ss_pred EECCCCcEEEEEeC---CCC----EEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCC-------cccc
Confidence 9876664 34443 554 789999999999999999975 44333222322222222211110 0111
Q ss_pred EEEEEcc-CceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCC-eeEE-Eee---ceEeceeee
Q 012845 278 LFFIFNT-EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-IDVI-DIK---PWVMHAEVA 351 (455)
Q Consensus 278 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~---~~~~~~~~~ 351 (455)
....+.+ .+..++++.......+.+..+.........+...+.+.+.+.+.++..... .... ... .+++.....
T Consensus 200 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (388)
T PRK07045 200 NRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNL 279 (388)
T ss_pred ceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecCcccc
Confidence 1122223 333333333322222333333222222233344555556566554322111 1101 111 123333344
Q ss_pred cccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC-CCchhhhhHHHhhhHHHHHhHHhHHHHHHH
Q 012845 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFRA 430 (455)
Q Consensus 352 ~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~-~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~ 430 (455)
+.|. .+||+|||||||.|+|++|||+|+||+||..|+++|.+.+.+. ...++|+.|++.|++++..++..++..-..
T Consensus 280 ~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~ 357 (388)
T PRK07045 280 DRYH--KRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALATT 357 (388)
T ss_pred cccc--CCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhh
Confidence 5665 4999999999999999999999999999999999998865432 456899999999999999999998866665
Q ss_pred Hh
Q 012845 431 AM 432 (455)
Q Consensus 431 ~~ 432 (455)
++
T Consensus 358 ~~ 359 (388)
T PRK07045 358 YH 359 (388)
T ss_pred cc
Confidence 54
No 18
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.1e-38 Score=319.01 Aligned_cols=349 Identities=19% Similarity=0.298 Sum_probs=238.0
Q ss_pred cCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccce
Q 012845 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118 (455)
Q Consensus 39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~ 118 (455)
|++..+||+||||||+|+++|+.|+++|++|+||||.+.+.. .+++.+.++++++|+++ |+++.+.....+....
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~r~~~l~~~s~~~l~~l-gl~~~~~~~~~~~~~~--- 77 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTTALLGPSIRFLERL-GLWARLAPHAAPLQSM--- 77 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-cchhhCcHHHHHHHHHh-CchhhhHhhcceeeEE---
Confidence 446678999999999999999999999999999999876533 56677888999999999 9999997766554322
Q ss_pred EEeecCCCCcccccc-CCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEE
Q 012845 119 IYCTSVTGPILGSVD-HMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (455)
Q Consensus 119 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v 197 (455)
.+. +..+....... .....+. ......+.+.+..+.+.|.+.+.+.+. ..+++++|
T Consensus 78 ~~~-~~~g~~~~~~~~~~~~~~~---~~~~~g~~i~~~~l~~~L~~~~~~~~~-------------------~~~~~~~v 134 (388)
T PRK07494 78 RIV-DATGRLIRAPEVRFRAAEI---GEDAFGYNIPNWLLNRALEARVAELPN-------------------ITRFGDEA 134 (388)
T ss_pred EEE-eCCCCCCCCceEEEcHHhc---CCCccEEEeEhHHHHHHHHHHHhcCCC-------------------cEEECCee
Confidence 121 12232221100 0000000 011123568899999999999988764 34889999
Q ss_pred EEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCce
Q 012845 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (455)
Q Consensus 198 ~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (455)
++++.+++++.+++. +|. ++++|+||+|||.+|.+|+.++.+.....+.+..+...+... ......
T Consensus 135 ~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-------~~~~~~ 200 (388)
T PRK07494 135 ESVRPREDEVTVTLA---DGT----TLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHS-------RPHQNV 200 (388)
T ss_pred EEEEEcCCeEEEEEC---CCC----EEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEecc-------CCCCCE
Confidence 999988888877765 554 789999999999999999999887666655555554443321 112233
Q ss_pred EEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEE-EeeceEeceeeeccccc
Q 012845 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLC 356 (455)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 356 (455)
.+.++.+.+...+++.+.....+.|...... .......+.+.+.+.+.+.+.......... ....|++.....+.|..
T Consensus 201 ~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 279 (388)
T PRK07494 201 STEFHTEGGPFTQVPLPGRRSSLVWVVRPAE-AERLLALSDAALSAAIEERMQSMLGKLTLEPGRQAWPLSGQVAHRFAA 279 (388)
T ss_pred EEEEeCCCCcEEEEECCCCcEEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHhhhcCCeEEccCCcEeechHHHHHhhcc
Confidence 3444556555555554433323333322111 111234455666666666544333332222 22346665555566664
Q ss_pred CCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432 (455)
Q Consensus 357 ~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 432 (455)
+||+|+|||||.++|+.|||+|+||+||..|+++|.+...+....++|+.|++.|++++..++..+....+.+.
T Consensus 280 --~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~ 353 (388)
T PRK07494 280 --GRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLL 353 (388)
T ss_pred --CceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999874334345789999999999999888887776666554
No 19
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=316.14 Aligned_cols=343 Identities=24% Similarity=0.329 Sum_probs=243.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
+..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+.+ |+++.+...+.+......
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~l-Gl~~~l~~~~~~~~~~~~--- 78 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELV-DLFDELYPLGKPCNTSSV--- 78 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhc-ChHHHHHhhCccceeEEE---
Confidence 4568999999999999999999999999999999998877888999999999999999 999998776655432111
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
...+..+........ ...... ......+.+..+++.|.+.+.+.|+ +++++++|+++
T Consensus 79 --~~~g~~i~~~~~~~~-~~~~~~-~~~~~~~~q~~le~~L~~~~~~~Gv-------------------~v~~~~~v~~l 135 (487)
T PRK07190 79 --WANGKFISRQSSWWE-ELEGCL-HKHFLMLGQSYVEKLLDDKLKEAGA-------------------AVKRNTSVVNI 135 (487)
T ss_pred --ecCCceEeeccccCc-cCCcCC-CCceEecCHHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEE
Confidence 111222111100000 000000 1123457889999999999999887 99999999999
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEe-cCCcccccccCCCceEE
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFL-SKDLGDYLLNERPGMLF 279 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 279 (455)
+.+++++.+.+. +|. ++++|+||+|||.+|.+|+++|+++.+......+...... ..+.+. .+....
T Consensus 136 ~~~~~~v~v~~~---~g~----~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~-----~~~~~~ 203 (487)
T PRK07190 136 ELNQAGCLTTLS---NGE----RIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPK-----VPEIIV 203 (487)
T ss_pred EEcCCeeEEEEC---CCc----EEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCC-----CcceEE
Confidence 998888777665 553 7899999999999999999999888766544444333221 111110 111222
Q ss_pred EEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh-CCCCCCeeEEEeeceEeceeeecccccCC
Q 012845 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV-GWELSDIDVIDIKPWVMHAEVAEKFLCCY 358 (455)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (455)
+..+.+...+++. ..+...+.+.. ....++.+.+.+.+.+.+ +......++.....|++..+..+.|.. .
T Consensus 204 -~~~~~g~~~~~p~--~~~~~r~~~~~-----~~~~~t~~~~~~~l~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~-~ 274 (487)
T PRK07190 204 -FQAETSDVAWIPR--EGEIDRFYVRM-----DTKDFTLEQAIAKINHAMQPHRLGFKEIVWFSQFSVKESVAEHFFI-Q 274 (487)
T ss_pred -EEcCCCCEEEEEC--CCCEEEEEEEc-----CCCCCCHHHHHHHHHHhcCCCCCceEEEEEEEEeeeCcEehhhcCc-C
Confidence 2233333333333 22222222211 123566777777776644 333333344455678888888888852 3
Q ss_pred CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (455)
Q Consensus 359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~ 431 (455)
+||+|+|||||.++|..|||||++|+||..|+++|...+++......|+.|+++|++..+.++..++.+.+..
T Consensus 275 gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~ 347 (487)
T PRK07190 275 DRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPVAQGVIETSGELVRST 347 (487)
T ss_pred CcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998887777889999999999999999999998776644
No 20
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=5.8e-38 Score=313.82 Aligned_cols=343 Identities=21% Similarity=0.259 Sum_probs=225.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~--~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
++||+||||||+|+++|+.|++.|++|+||||.+.+ ....++..+.++++++|+++ |+++.+...+.+.... .+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~---~~ 77 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREA-GVGERMDREGLVHDGI---EL 77 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHc-CChHHHHhcCCccCcE---EE
Confidence 579999999999999999999999999999999864 23345667999999999999 9999998776654322 22
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
.. .+.. ...+.... ........+.|..+.+.|++.+.+.|+ +++++++++++
T Consensus 78 ~~--~g~~-~~~~~~~~------~~~~~~~~~~~~~l~~~Ll~~a~~~gv-------------------~v~~~~~v~~i 129 (392)
T PRK08243 78 RF--DGRR-HRIDLTEL------TGGRAVTVYGQTEVTRDLMAARLAAGG-------------------PIRFEASDVAL 129 (392)
T ss_pred EE--CCEE-EEeccccc------cCCceEEEeCcHHHHHHHHHHHHhCCC-------------------eEEEeeeEEEE
Confidence 21 2221 11111100 001123345688888899888887776 89999999999
Q ss_pred ee-cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCC---cccceeEEEEEecCCcccccccCCCc
Q 012845 201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE---KDLQKLVSVHFLSKDLGDYLLNERPG 276 (455)
Q Consensus 201 ~~-~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
+. +++.+.|++. .+|+ +.++++|+||+|||.+|.+|++++...... .+...+.. ... +.. ....
T Consensus 130 ~~~~~~~~~V~~~--~~G~--~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~--~~~-~~~-----~~~~ 197 (392)
T PRK08243 130 HDFDSDRPYVTYE--KDGE--EHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLG--ILA-EAP-----PVSD 197 (392)
T ss_pred EecCCCceEEEEE--cCCe--EEEEEeCEEEECCCCCCchhhhcCcchhhceecccCceEEE--EeC-CCC-----CCCC
Confidence 86 5566666653 2443 347899999999999999999996542110 00011111 111 100 1111
Q ss_pred eEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCC----CCCeeEEEeeceEeceeeec
Q 012845 277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE----LSDIDVIDIKPWVMHAEVAE 352 (455)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 352 (455)
..++...+.++.++...+.....+.+..+. ......++.+...+.+.+.+... ...........+++.....+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (392)
T PRK08243 198 ELIYANHERGFALCSMRSPTRSRYYLQCPL---DDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAE 274 (392)
T ss_pred ceEEeeCCCceEEEecCCCCcEEEEEEecC---CCCcccCChhHHHHHHHHhcCcccccccccCccccccceeeeeceec
Confidence 122222333333332222221233333321 22344556655666666654431 11111222233445445556
Q ss_pred ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432 (455)
Q Consensus 353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 432 (455)
+|.. +||+|||||||.++|++|||+|+||+||..|+++|.+.+++ +..++|+.|++.|++++..++..|+..-..++
T Consensus 275 ~~~~--grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~-~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~ 351 (392)
T PRK08243 275 PMQY--GRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE-GDTALLDAYSATALRRVWKAERFSWWMTSMLH 351 (392)
T ss_pred ccee--CCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6654 89999999999999999999999999999999999987654 35789999999999999999999998888877
Q ss_pred ccc
Q 012845 433 EVP 435 (455)
Q Consensus 433 ~~~ 435 (455)
..+
T Consensus 352 ~~~ 354 (392)
T PRK08243 352 RFP 354 (392)
T ss_pred cCC
Confidence 654
No 21
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=2.3e-38 Score=317.52 Aligned_cols=342 Identities=18% Similarity=0.199 Sum_probs=215.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
.+|+||||||+||++|+.|+++|++|+||||.+.+...++++.|+++++++|+++ |+++.+...+.+.. .+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~-Gl~~~l~~~~~~~~---~~~~~~g 78 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERL-GVADRLSGTGVTPK---ALYLMDG 78 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHC-CChHHHhhcccCcc---eEEEecC
Confidence 6899999999999999999999999999999988888889999999999999999 99999987655432 1111111
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
..+......+.. .............+.|..|.+.|.+.+.+. ++ +++++++|++++.
T Consensus 79 ~~~~~~~~~~~~---~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i-------------------~v~~~~~v~~~~~ 136 (400)
T PRK06475 79 RKARPLLAMQLG---DLARKRWHHPYIVCHRADLQSALLDACRNNPGI-------------------EIKLGAEMTSQRQ 136 (400)
T ss_pred CCcceEEEecch---hhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc-------------------EEEECCEEEEEec
Confidence 111111110000 000000011234679999999999998764 44 8999999999998
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeE-EEEEecCCcccccc--cCCCceEE
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV-SVHFLSKDLGDYLL--NERPGMLF 279 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~ 279 (455)
+++++.+++...++++ ++++|+||+|||.+|.+|++++... ..+..... .............. ....+...
T Consensus 137 ~~~~v~v~~~~~~~~~----~~~adlvIgADG~~S~vR~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (400)
T PRK06475 137 TGNSITATIIRTNSVE----TVSAAYLIACDGVWSMLRAKAGFSK--ARFSGHIAWRTTLAADALPASFLSAMPEHKAVS 210 (400)
T ss_pred CCCceEEEEEeCCCCc----EEecCEEEECCCccHhHHhhcCCCC--CCcCCceEEEEEeehhhcchhhhhhcccCCceE
Confidence 8888777765222332 7899999999999999999986422 22212211 11111111111111 01223334
Q ss_pred EEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCC----CHHHHHHHHHHhhCCCCCCeeE----EEeeceEeceeee
Q 012845 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF----SPEICEKLIFKLVGWELSDIDV----IDIKPWVMHAEVA 351 (455)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~ 351 (455)
.++.++.....+ |...+...+.+....+......| +.+.+.+.+. +|......+ .....|++.....
T Consensus 211 ~~~g~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~l~~~~~ 285 (400)
T PRK06475 211 AWLGNKAHFIAY--PVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYA---DWNKPVLQILAAIDEWTYWPLFEMAD 285 (400)
T ss_pred EEEcCCCEEEEE--EccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHhc---CCChHHHHHHhcCCceeECcCcccCC
Confidence 444555544444 33333322222211111111112 1222222221 221111111 1112344443333
Q ss_pred cccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHH
Q 012845 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427 (455)
Q Consensus 352 ~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~ 427 (455)
.++. ..+|++|||||||.|+|+.|||+|+||+||.+|+++|.. .+...+|+.|++.|+++++.++..++..
T Consensus 286 ~~~~-~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~----~~~~~aL~~Ye~~R~~r~~~~~~~s~~~ 356 (400)
T PRK06475 286 AQFV-GPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS----DDQSAGLKRFDSVRKERIAAVAKRGQLN 356 (400)
T ss_pred Ccce-ecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3432 248999999999999999999999999999999999963 2456899999999999999999999633
No 22
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=6.7e-38 Score=315.00 Aligned_cols=345 Identities=20% Similarity=0.245 Sum_probs=230.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC--CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~~--~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~ 119 (455)
+||+||||||+|+++|+.|+++| ++|+||||.+... ..+++..|+++++++|+++ |+++.+...+.+.... .
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~---~ 77 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEAL-GVWDEIAPEAQPITDM---V 77 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHC-CChhhhhhhcCcccEE---E
Confidence 79999999999999999999995 9999999987643 3468999999999999999 9999998766655322 1
Q ss_pred EeecCCCCcccc--ccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEE
Q 012845 120 YCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (455)
Q Consensus 120 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v 197 (455)
+.....+..... ....... .........++|..|.+.|.+.+.+.|+ +++++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v 134 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEGEV----EPGEPFAHMVENRVLINALRKRAEALGI-------------------DLREATSV 134 (403)
T ss_pred EEeCCCCCCCccceEEecccc----cCCCccEEEeEhHHHHHHHHHHHHhCCC-------------------EEEcCCEE
Confidence 111111111100 0000000 0011123467999999999999998886 99999999
Q ss_pred EEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCce
Q 012845 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (455)
Q Consensus 198 ~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (455)
++++.+++.+.+++. +|. ++.+|+||+|||.+|.+|+.++.......+....+........ .....
T Consensus 135 ~~i~~~~~~v~v~~~---~g~----~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 200 (403)
T PRK07333 135 TDFETRDEGVTVTLS---DGS----VLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHER-------PHGGR 200 (403)
T ss_pred EEEEEcCCEEEEEEC---CCC----EEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCC-------CCCCE
Confidence 999988887777665 554 7899999999999999999998765544444443333222111 11223
Q ss_pred EEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE-eeceEeceeeeccccc
Q 012845 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFLC 356 (455)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 356 (455)
....+.+++..++++.+.....+.|..+... .........+.+.+.+.+.++.......... ...|+......+.|..
T Consensus 201 ~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (403)
T PRK07333 201 AEEHFLPAGPFAILPLKGNRSSLVWTERTAD-AERLVALDDLVFEAELEQRFGHRLGELKVLGKRRAFPLGLTLARSFVA 279 (403)
T ss_pred EEEEeCCCCceEEeECCCCCeEEEEECCHHH-HHHHHCCCHHHHHHHHHHHhhhhcCceEeccCccEeechhhhhhhccC
Confidence 3344455555555544333222333211100 0011122333344444444443322222221 1234444444556654
Q ss_pred CCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcC---CCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD---IAPASILNTYETERKPIAEFNTALSVQNFRAAM 432 (455)
Q Consensus 357 ~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~---~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 432 (455)
+||+|||||||.++|+.|||+|+||+||..|+++|.+..+. .....+|+.|++.|+++...++..++...+.++
T Consensus 280 --grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~ 356 (403)
T PRK07333 280 --PRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFS 356 (403)
T ss_pred --CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999987642 246899999999999999999998887766554
No 23
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=2.4e-37 Score=309.72 Aligned_cols=345 Identities=18% Similarity=0.209 Sum_probs=229.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCcccccChhHHHHHHhhhchHHHHHhc-CCCcc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVD 113 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~------~~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~ 113 (455)
...+||+||||||+|+++|+.|++.|++|+|||+.+.... ..+...++++++++|+++ |+++.+... ..+..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~ 81 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL-GVWDAVQAMRSHPYR 81 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc-CChhhhhhhhCcccc
Confidence 4569999999999999999999999999999999864321 224568899999999999 999988653 23322
Q ss_pred cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEE
Q 012845 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREIL 192 (455)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~ 192 (455)
... ......+.... +. ... ..+...+.++|..|.+.|.+.+.+. |+ +++
T Consensus 82 ~~~---~~~~~~~~~~~--~~---~~~---~~~~~g~~i~r~~l~~~L~~~~~~~~gv-------------------~i~ 131 (391)
T PRK08020 82 RLE---TWEWETAHVVF--DA---AEL---KLPELGYMVENRVLQLALWQALEAHPNV-------------------TLR 131 (391)
T ss_pred eEE---EEeCCCCeEEe--cc---ccc---CCCccEEEEEcHHHHHHHHHHHHcCCCc-------------------EEE
Confidence 111 11111121111 10 000 0122245688999999999998876 55 899
Q ss_pred eccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccccccc
Q 012845 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN 272 (455)
Q Consensus 193 ~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (455)
++++|+++..+++.+.+++. +|. ++++|+||+|||.+|.+|+.++.......+.+..+........
T Consensus 132 ~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~------- 197 (391)
T PRK08020 132 CPASLQALQRDDDGWELTLA---DGE----EIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCEN------- 197 (391)
T ss_pred cCCeeEEEEEcCCeEEEEEC---CCC----EEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecC-------
Confidence 99999999887777777665 554 7899999999999999999998766555555444443332221
Q ss_pred CCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeec
Q 012845 273 ERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAE 352 (455)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (455)
......+..+.+.+...+++.........|.... .....+...+.+.+.+.+.+.++.............|++.....+
T Consensus 198 ~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~~~~ 276 (391)
T PRK08020 198 PPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSP-ARIRQLQAMSMAQLQQEIAAHFPARLGAVTPVAAGAFPLTRRHAL 276 (391)
T ss_pred CCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCH-HHHHHHHCCCHHHHHHHHHHHhhhhccceEeccccEeecceeehh
Confidence 1222333334444444444333221122222110 001112233445555555554443333333333445676666666
Q ss_pred ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcC-C--CCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-I--APASILNTYETERKPIAEFNTALSVQNFR 429 (455)
Q Consensus 353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~-~--~~~~al~~Y~~~r~~~~~~~~~~s~~~~~ 429 (455)
.|.. +|++|+|||||.++|+.|||+|+||+||..|+++|.+..+. . ....+|+.|++.|+++...++..+..+++
T Consensus 277 ~~~~--~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~ 354 (391)
T PRK08020 277 QYVQ--PGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYA 354 (391)
T ss_pred hhcc--CcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765 99999999999999999999999999999999999986532 1 34689999999999999888887777666
Q ss_pred HHhc
Q 012845 430 AAME 433 (455)
Q Consensus 430 ~~~~ 433 (455)
.+..
T Consensus 355 ~~~~ 358 (391)
T PRK08020 355 GFSN 358 (391)
T ss_pred HHcC
Confidence 5553
No 24
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=1.2e-37 Score=311.74 Aligned_cols=340 Identities=15% Similarity=0.198 Sum_probs=226.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-----CcccccChhHHHHHHhhhchHHHHHhc-CCCccc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-----PQAHFINNRYALVFRKLDGLAEEIERS-QPPVDL 114 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~-----~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~~ 114 (455)
...+||+||||||+|+++|+.|+++|++|+||||.+.+... .+...++++++++|+++ |+++.+.+. ..+...
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~ 82 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL-GVWPAVRAARAQPYRR 82 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC-CchhhhhHhhCCcccE
Confidence 45689999999999999999999999999999998765322 23467899999999999 999998763 333321
Q ss_pred ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (455)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~ 194 (455)
..+.....+... .++.. .. ......+.++|..|.+.|.+.+.+.|+ +++++
T Consensus 83 ---~~~~~~~~~~~~-~~~~~---~~---~~~~~~~~v~~~~l~~~L~~~~~~~gv-------------------~i~~~ 133 (392)
T PRK08773 83 ---MRVWDAGGGGEL-GFDAD---TL---GREQLGWIVENDLLVDRLWAALHAAGV-------------------QLHCP 133 (392)
T ss_pred ---EEEEeCCCCceE-Eechh---cc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EEEcC
Confidence 111111111111 11110 00 011123567899999999999998886 99999
Q ss_pred cEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCC
Q 012845 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274 (455)
Q Consensus 195 ~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
++|++++.+++.+.+++. +|. ++++|+||+|||.+|.+|+.++.......+.+..+....... . +.
T Consensus 134 ~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-~------~~ 199 (392)
T PRK08773 134 ARVVALEQDADRVRLRLD---DGR----RLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTE-H------PH 199 (392)
T ss_pred CeEEEEEecCCeEEEEEC---CCC----EEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEcc-C------CC
Confidence 999999988887777665 554 789999999999999999999866544333333322222111 1 12
Q ss_pred CceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE-eeceEeceeeecc
Q 012845 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK 353 (455)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 353 (455)
+...+..+.+++...+++.+.....+.|.++.... +....++.+.+.+.+.+.++.......... ...|++.....+.
T Consensus 200 ~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (392)
T PRK08773 200 QATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEA-ERVLALDEAAFSRELTQAFAARLGEVRVASPRTAFPLRRQLVQQ 278 (392)
T ss_pred CCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHH-HHHHcCCHHHHHHHHHHHHhhhhcCeEecCCccEeechhhhhhh
Confidence 33444455666655555554444444454432111 122334444444444444433222222221 2245655556667
Q ss_pred cccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcC---CCCchhhhhHHHhhhHHHHHhHHhHHHH
Q 012845 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD---IAPASILNTYETERKPIAEFNTALSVQN 427 (455)
Q Consensus 354 ~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~---~~~~~al~~Y~~~r~~~~~~~~~~s~~~ 427 (455)
|.. +||+|+|||||.|+|+.|||+|+||+||..|+++|.+.... .....+|+.|++.|+++...+.......
T Consensus 279 ~~~--~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l 353 (392)
T PRK08773 279 YVS--GRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAI 353 (392)
T ss_pred hcC--CcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 99999999999999999999999999999999999987532 2345899999999999987666655433
No 25
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=7.6e-38 Score=311.33 Aligned_cols=329 Identities=19% Similarity=0.215 Sum_probs=217.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
.||+||||||+||++|+.|+++|++|+||||++.+...++++.|.+++++.|+.+ |+++.+...+.+..... +. +
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~-gl~~~~~~~~~~~~~~~---~~-~ 75 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNH-DLAKGIKNAGQILSTMN---LL-D 75 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhc-ChHHHHHhcCCccccee---EE-c
Confidence 3799999999999999999999999999999999888889999999999999999 99998877665543221 21 2
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~ 203 (455)
.+|..+...+.. . ......++|..|.+.|.+.+.. .+++++++|++++.+
T Consensus 76 ~~g~~~~~~~~~--------~-~~~~~~i~R~~l~~~L~~~~~~---------------------~~i~~~~~v~~i~~~ 125 (373)
T PRK06753 76 DKGTLLNKVKLK--------S-NTLNVTLHRQTLIDIIKSYVKE---------------------DAIFTGKEVTKIENE 125 (373)
T ss_pred CCCCEEeecccc--------c-CCccccccHHHHHHHHHHhCCC---------------------ceEEECCEEEEEEec
Confidence 234333222110 0 1123568999999999988653 278999999999988
Q ss_pred CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEEc
Q 012845 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (455)
Q Consensus 204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (455)
++++.+++. +|. ++.+|+||+|||.+|.+|++++...... +........... ... . ..+......+.
T Consensus 126 ~~~v~v~~~---~g~----~~~~~~vigadG~~S~vR~~~~~~~~~~-~~g~~~~~~~~~-~~~--~--~~~~~~~~~~~ 192 (373)
T PRK06753 126 TDKVTIHFA---DGE----SEAFDLCIGADGIHSKVRQSVNADSKVR-YQGYTCFRGLID-DID--L--KLPDCAKEYWG 192 (373)
T ss_pred CCcEEEEEC---CCC----EEecCEEEECCCcchHHHHHhCCCCCce-EcceEEEEEEec-ccc--c--cCccceEEEEc
Confidence 888877765 664 6799999999999999999997543211 111111111111 110 0 01112223334
Q ss_pred cCceEEEEeecCCCCeEEEEeecC--CCCCCCCCCCHHHHHHHHHHh-------hCCCCCCeeEEEeeceEec-eeeecc
Q 012845 284 TEAIGVLVAHDLKEGEFILQVPFY--PPQQNLEDFSPEICEKLIFKL-------VGWELSDIDVIDIKPWVMH-AEVAEK 353 (455)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~ 353 (455)
+.+..+++ +...+...|.+... .........+.+.+.+.+..+ +.... ...+. .++.. ....+.
T Consensus 193 ~~g~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~ 266 (373)
T PRK06753 193 TKGRFGIV--PLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQS-ETGIL---HHDIYDLKPLKS 266 (373)
T ss_pred CCCEEEEE--EcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCC-cccce---eecccccccccc
Confidence 44444443 33444444443322 112223333333333333221 11100 00000 11111 122345
Q ss_pred cccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432 (455)
Q Consensus 354 ~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 432 (455)
|. .+||+|||||||.|+|+.|||+|+||+||..|+++|.+ .+..++|+.|++.|++++..+++.|+...+.++
T Consensus 267 ~~--~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~----~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 339 (373)
T PRK06753 267 FV--YGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA----YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQ 339 (373)
T ss_pred cc--CCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHh
Confidence 54 48999999999999999999999999999999999963 256789999999999999999999998777655
No 26
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=1.4e-37 Score=310.74 Aligned_cols=342 Identities=20% Similarity=0.262 Sum_probs=229.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-----CcccccChhHHHHHHhhhchHHHHHh-cCCCcccccce
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-----PQAHFINNRYALVFRKLDGLAEEIER-SQPPVDLWRKF 118 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~-----~~~~~l~~~~~~~l~~~~gl~~~l~~-~~~~~~~~~~~ 118 (455)
||+||||||+|+++|+.|+++|++|+||||.+.++.. +++..+++++++.|+++ |+++++.. ...+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~~--- 76 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL-GVWDKIEPDRAQPIRDI--- 76 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC-CchhhhhhhcCCCceEE---
Confidence 7999999999999999999999999999999886543 46789999999999999 99999877 55544322
Q ss_pred EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (455)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~ 198 (455)
.+. ...+......+. ... ..+.....++|..|.+.|.+.+.+.|. ++++++++|+
T Consensus 77 ~~~-~~~~~~~~~~~~---~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------~~v~~~~~v~ 131 (385)
T TIGR01988 77 HVS-DGGSFGALHFDA---DEI---GLEALGYVVENRVLQQALWERLQEYPN------------------VTLLCPARVV 131 (385)
T ss_pred EEE-eCCCCceEEech---hhc---CCCccEEEEEcHHHHHHHHHHHHhCCC------------------cEEecCCeEE
Confidence 111 111111111110 000 112234678999999999999988771 3899999999
Q ss_pred EeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceE
Q 012845 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (455)
Q Consensus 199 ~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (455)
+++..++.+.+++. +|. ++.+|+||+|||.+|.+|++++.+.....+....+...+.... ..+...
T Consensus 132 ~i~~~~~~~~v~~~---~g~----~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 197 (385)
T TIGR01988 132 ELPRHSDHVELTLD---DGQ----QLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHER-------PHQGTA 197 (385)
T ss_pred EEEecCCeeEEEEC---CCC----EEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecC-------CCCCEE
Confidence 99988877777665 664 6899999999999999999998665443333333332222111 112233
Q ss_pred EEEEccCceEEEEeecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHhhCCCCCCeeE-EEeeceEeceeeeccccc
Q 012845 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKFLC 356 (455)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 356 (455)
+..+.+.+..++++.+ .+...+.+...... .....++.+.+.+.+.+.+......... .....+++.....+.|.
T Consensus 198 ~~~~~~~g~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 274 (385)
T TIGR01988 198 WERFTPTGPLALLPLP--DNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYV- 274 (385)
T ss_pred EEEecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEeccCcceeechhhhhhhee-
Confidence 3334444444444443 34433333222111 1122344555555555544322222211 12233444444445555
Q ss_pred CCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC---CCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKPIAEFNTALSVQNFRAAME 433 (455)
Q Consensus 357 ~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~---~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 433 (455)
.++|+|||||||.|+|++|||+|+||+||..|+++|.+.++.. ....+|+.|++.|++++..++..++.....+..
T Consensus 275 -~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~ 353 (385)
T TIGR01988 275 -APRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSN 353 (385)
T ss_pred -cCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4999999999999999999999999999999999999876422 246899999999999999999999887776653
No 27
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=1.5e-37 Score=310.26 Aligned_cols=340 Identities=22% Similarity=0.306 Sum_probs=227.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCC----CcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTH----PQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~~~~----~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~ 119 (455)
||+||||||+|+++|+.|+++| ++|+||||.+.+... .++..++++++++|+++ |+++.+...+.+...+ .
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~---~ 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL-GLWPKLAPFATPILDI---H 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC-CChhhhHhhcCccceE---E
Confidence 7999999999999999999999 999999999877554 35789999999999999 9999987766554321 1
Q ss_pred Eeec-CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEE
Q 012845 120 YCTS-VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHEC 197 (455)
Q Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v 197 (455)
+... ..+... .. ..+. ..+...+.++|..|.+.|.+.+.+. |+ +++++++|
T Consensus 77 ~~~~~~~~~~~--~~---~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~gv-------------------~~~~~~~v 129 (382)
T TIGR01984 77 VSDQGHFGATH--LR---ASEF---GLPALGYVVELADLGQALLSRLALLTNI-------------------QLYCPARY 129 (382)
T ss_pred EEcCCCCceEE--ec---hhhc---CCCccEEEEEcHHHHHHHHHHHHhCCCc-------------------EEEcCCeE
Confidence 1111 011110 00 0000 0122235688999999999999884 65 99999999
Q ss_pred EEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCce
Q 012845 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (455)
Q Consensus 198 ~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (455)
++++.+++++.+++. +|. ++.+|+||+|||.+|.+|+.++.......+.+..+...+..... ....
T Consensus 130 ~~i~~~~~~~~v~~~---~g~----~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 195 (382)
T TIGR01984 130 KEIIRNQDYVRVTLD---NGQ----QLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQP-------HQGC 195 (382)
T ss_pred EEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCC-------CCCE
Confidence 999888887777665 554 78999999999999999999986654443333333322211111 1122
Q ss_pred EEEEEccCceEEEEeecCCCC-eEEEEeecCCC-CCCCCCCCHHHHHHHHHHhhCCCCCCeeE-EEeeceEeceeeeccc
Q 012845 278 LFFIFNTEAIGVLVAHDLKEG-EFILQVPFYPP-QQNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKF 354 (455)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 354 (455)
.+..+.+.+...++ |...+ .+.+....... .....+.+.+.+.+.+.+.+++....... .....|++.....+.|
T Consensus 196 ~~~~~~~~g~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (382)
T TIGR01984 196 AFERFTPHGPLALL--PLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTYPLKLRIAETH 273 (382)
T ss_pred EEEeeCCCCCeEEC--cCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEeecchhhhhhe
Confidence 23334444433333 33333 33222221111 01122334445555555555433222221 1222355544445555
Q ss_pred ccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME 433 (455)
Q Consensus 355 ~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 433 (455)
. .+||+|||||||.|+|++|||+|+||+||..|+++|.+...+.....+|+.|++.|+++...++.++....+.+..
T Consensus 274 ~--~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~ 350 (382)
T TIGR01984 274 V--HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSN 350 (382)
T ss_pred e--cCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5 4999999999999999999999999999999999998765333457899999999999999999999887776654
No 28
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=310.74 Aligned_cols=343 Identities=17% Similarity=0.209 Sum_probs=224.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-----CCCcccccChhHHHHHHhhhchHHHHHhcCC-Ccccc
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-----THPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLW 115 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~-----~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~-~~~~~ 115 (455)
+++||+||||||+|+++|+.|+++|++|+||||.+.+. ..+.++.|++++++.|+++ |+++.+..... +..
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l-Gl~~~~~~~~~~~~~-- 78 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL-GAWDRIPEDEISPLR-- 78 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC-CChhhhccccCCccc--
Confidence 36999999999999999999999999999999998642 2355677899999999999 99988865432 221
Q ss_pred cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHh-cccccccCCCcccccccccccceEEec
Q 012845 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMG 194 (455)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~~ 194 (455)
...+. + +............ .........++|..|.+.|.+.+.+ .|+ +++++
T Consensus 79 -~~~~~-~--~~~~~~~~~~~~~----~~~~~~g~~~~~~~l~~~l~~~~~~~~g~-------------------~i~~~ 131 (392)
T PRK09126 79 -DAKVL-N--GRSPFALTFDARG----RGADALGYLVPNHLIRRAAYEAVSQQDGI-------------------ELLTG 131 (392)
T ss_pred -eEEEE-c--CCCCceeEeehhh----cCCCcceEEEeHHHHHHHHHHHHhhCCCc-------------------EEEcC
Confidence 11111 1 1111111100000 0001123456888899999988765 454 99999
Q ss_pred cEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCC
Q 012845 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274 (455)
Q Consensus 195 ~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
++|++++.+++.+.|.+. +|+ ++++|+||+|||.+|.+|+.++.......+....+...... . ...
T Consensus 132 ~~v~~~~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~-~------~~~ 197 (392)
T PRK09126 132 TRVTAVRTDDDGAQVTLA---NGR----RLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRH-E------LPH 197 (392)
T ss_pred CeEEEEEEcCCeEEEEEc---CCC----EEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEec-c------CCC
Confidence 999999887777777665 664 78999999999999999999986554333333332222211 1 112
Q ss_pred CceEEEEEccCceEEEEeecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHhhCCCCCCeeE-EEeeceEeceeeec
Q 012845 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAE 352 (455)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 352 (455)
....+..+..+...++++. .++.+.+.+....+. .....++.+.+.+.+...+......... .....|+......+
T Consensus 198 ~~~~~~~~~~~~~~~~~P~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (392)
T PRK09126 198 HHTAWEWFGYGQTLALLPL--NGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAH 275 (392)
T ss_pred CCEEEEEecCCCCeEEeEC--CCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHH
Confidence 2334444555544444433 334444443322211 1112344444444444433322222211 11223444444455
Q ss_pred ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcC---CCCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD---IAPASILNTYETERKPIAEFNTALSVQNFR 429 (455)
Q Consensus 353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~---~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~ 429 (455)
+|.. +||+|+|||||.++|+.|||+|+||+||..|+++|...++. ....++|+.|+++|+++...++..++....
T Consensus 276 ~~~~--~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~ 353 (392)
T PRK09126 276 RFVA--KRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAA 353 (392)
T ss_pred HHhh--cceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 99999999999999999999999999999999999987642 234689999999999999999999988777
Q ss_pred HHh
Q 012845 430 AAM 432 (455)
Q Consensus 430 ~~~ 432 (455)
.++
T Consensus 354 ~~~ 356 (392)
T PRK09126 354 LYT 356 (392)
T ss_pred HHC
Confidence 554
No 29
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=6.4e-37 Score=308.37 Aligned_cols=342 Identities=19% Similarity=0.202 Sum_probs=217.8
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
+||+||||||+||++|+.|+++|++|+||||.+.+.+.+.++.+.+++++.|+++ |+++.+...+.+...+. +. +
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~l-gl~~~l~~~~~~~~~~~---~~-~ 75 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAEL-GLLDALDAIGIRTRELA---YF-N 75 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHC-CCHHHHHhhCCCCcceE---EE-c
Confidence 4899999999999999999999999999999998888888999999999999999 99999887665543322 21 2
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHh-cccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
..|..+...+...... .......++|..|++.|.+.+.+ .|. ..|+++++|++++.
T Consensus 76 ~~g~~~~~~~~~~~~~-----~~~~~~~i~R~~l~~~L~~~~~~~~g~------------------~~i~~~~~v~~~~~ 132 (413)
T PRK07538 76 RHGQRIWSEPRGLAAG-----YDWPQYSIHRGELQMLLLDAVRERLGP------------------DAVRTGHRVVGFEQ 132 (413)
T ss_pred CCCCEEeeccCCcccC-----CCCceEEEEHHHHHHHHHHHHHhhcCC------------------cEEEcCCEEEEEEe
Confidence 2343332211100000 01123458999999999999866 353 36999999999998
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEE
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (455)
+++++.+.+.. +..+..+++++|+||+|||.+|.+|+++++......+............. . ......+.+.
T Consensus 133 ~~~~~~~~~~~--~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~--~----~~~~~~~~~~ 204 (413)
T PRK07538 133 DADVTVVFLGD--RAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAP--P----FLTGRSMVMA 204 (413)
T ss_pred cCCceEEEEec--cCCCccceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCc--c----ccCCCcEEEE
Confidence 77776666552 11222347899999999999999999996543222222111111111110 0 0111122222
Q ss_pred c-cCceEEEEeecCC-----CCeEEEEeecCCC---CCCCCCCCH-HHHHHHHHHhhCCCCCCe---eEE----EeeceE
Q 012845 283 N-TEAIGVLVAHDLK-----EGEFILQVPFYPP---QQNLEDFSP-EICEKLIFKLVGWELSDI---DVI----DIKPWV 345 (455)
Q Consensus 283 ~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~~~~~---~~~----~~~~~~ 345 (455)
. .+....+++.... ...+.|.++...+ ......|.. ....+++..+.+|..... +++ ....|+
T Consensus 205 g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~p 284 (413)
T PRK07538 205 GHLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEYP 284 (413)
T ss_pred cCCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeecc
Confidence 2 2222333322211 1244555544332 122233332 223333333223322100 111 111233
Q ss_pred ece-eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhH
Q 012845 346 MHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424 (455)
Q Consensus 346 ~~~-~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s 424 (455)
+.. ...+.|. .+||+|||||||.|+|++|||+|+||+||..|+++|.+. .+..++|+.|++.|++++..++..+
T Consensus 285 ~~~~~~~~~w~--~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~~~~aL~~Ye~~R~~~~~~~~~~s 359 (413)
T PRK07538 285 MVDRDPLPRWT--RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH---GDPEAALAAYEAERRPATAQIVLAN 359 (413)
T ss_pred ccccCCCCccc--CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhHHHHHHHHHh
Confidence 332 2344555 499999999999999999999999999999999999863 3467899999999999999999998
Q ss_pred HH
Q 012845 425 VQ 426 (455)
Q Consensus 425 ~~ 426 (455)
+.
T Consensus 360 ~~ 361 (413)
T PRK07538 360 RL 361 (413)
T ss_pred hh
Confidence 87
No 30
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=305.00 Aligned_cols=344 Identities=17% Similarity=0.184 Sum_probs=233.0
Q ss_pred cCCcccCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCCCC--CCCcccccChhHHHHHHhhhchHHHHHhcCCCc
Q 012845 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPV 112 (455)
Q Consensus 39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g----~~V~l~Er~~~~~--~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~ 112 (455)
|-.+.+||+||||||+|+++|+.|+++| ++|+|+|+.+.+. ...++..++++++++|+++ |+++.. ..+.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~l-g~~~~~---~~~~ 82 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETL-GAWPAD---ATPI 82 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhC-CCchhc---CCcc
Confidence 3356789999999999999999999997 4699999986543 2347899999999999999 998852 2222
Q ss_pred ccccceEEee-cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceE
Q 012845 113 DLWRKFIYCT-SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREI 191 (455)
Q Consensus 113 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i 191 (455)
.. ..+.. ...+....... +. ..+...+.++|..|.+.|.+.+.+.|+ .+
T Consensus 83 ~~---~~~~~~~~~g~~~~~~~-----~~---~~~~~g~~v~r~~l~~~L~~~~~~~g~-------------------~~ 132 (398)
T PRK06996 83 EH---IHVSQRGHFGRTLIDRD-----DH---DVPALGYVVRYGSLVAALARAVRGTPV-------------------RW 132 (398)
T ss_pred cE---EEEecCCCCceEEeccc-----cc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EE
Confidence 11 11110 01111111110 11 112235678999999999999999886 89
Q ss_pred EeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCC-CchhhhhcCCCccCCcccceeEEEEEecCCccccc
Q 012845 192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA-GSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL 270 (455)
Q Consensus 192 ~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~-~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (455)
++++++++++.+++++.+++. ++.+ .+++++|+||+|||. .|.+|+.++.......+.+..+........
T Consensus 133 ~~~~~v~~~~~~~~~v~v~~~---~~~g-~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~----- 203 (398)
T PRK06996 133 LTSTTAHAPAQDADGVTLALG---TPQG-ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSA----- 203 (398)
T ss_pred EcCCeeeeeeecCCeEEEEEC---CCCc-ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccC-----
Confidence 999999999888888877765 4432 137899999999997 578899888776666666555554433221
Q ss_pred ccCCCceEEEEEccCceEEEEeecCCCCe-EEEEeecCCC-CCCCCCCCHHHHHHHHHHhhCCCCCCeeEE-EeeceEec
Q 012845 271 LNERPGMLFFIFNTEAIGVLVAHDLKEGE-FILQVPFYPP-QQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMH 347 (455)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~ 347 (455)
..+...+..+.+.+...+++.+..... +.+....... ......++.+.+.+.+.+.++......... ....|++.
T Consensus 204 --~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (398)
T PRK06996 204 --PRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHAFPLG 281 (398)
T ss_pred --CCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEEecceEEEeee
Confidence 123334444555555555544332221 2222111111 112334555556666666665543333222 12245555
Q ss_pred eeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHH
Q 012845 348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427 (455)
Q Consensus 348 ~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~ 427 (455)
....+.|.. +||+|||||||.++|+.|||+|+||+||..|+++|.+ ......+|+.|++.|++++..++..+..+
T Consensus 282 ~~~~~~~~~--grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~---~~~~~~~L~~Y~~~R~~~~~~~~~~s~~l 356 (398)
T PRK06996 282 LNAARTLVN--GRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD---HGATPLALATFAARRALDRRVTIGATDLL 356 (398)
T ss_pred cccccceec--CCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566664 9999999999999999999999999999999999975 23356889999999999999999999988
Q ss_pred HHHHh
Q 012845 428 FRAAM 432 (455)
Q Consensus 428 ~~~~~ 432 (455)
.+.++
T Consensus 357 ~~~~~ 361 (398)
T PRK06996 357 PRLFT 361 (398)
T ss_pred HHHHc
Confidence 77665
No 31
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=9.5e-37 Score=304.29 Aligned_cols=343 Identities=20% Similarity=0.265 Sum_probs=215.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~--~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
.+||+||||||+|+++|+.|+++|++|+||||.+.+. ...++..++++++++|+++ |+++.+...+.+..... +
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~---~ 77 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREA-GVDERMDREGLVHEGTE---I 77 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHC-CChHHHHhcCceecceE---E
Confidence 4799999999999999999999999999999998642 2345666899999999999 99999988665543221 1
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
.. .+. ....+..... .......+.+..|.+.|.+.+.+.|+ .++++++++.+
T Consensus 78 ~~--~~~-~~~~~~~~~~------~~~~~~~~~~~~l~~~L~~~~~~~g~-------------------~~~~~~~~v~~ 129 (390)
T TIGR02360 78 AF--DGQ-RFRIDLKALT------GGKTVMVYGQTEVTRDLMEAREAAGL-------------------TTVYDADDVRL 129 (390)
T ss_pred ee--CCE-EEEEeccccC------CCceEEEeCHHHHHHHHHHHHHhcCC-------------------eEEEeeeeEEE
Confidence 11 111 1111111000 01111223567888999999888776 88899998887
Q ss_pred ee-cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCC--ccc-ceeEEEEEecCCcccccccCCCc
Q 012845 201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE--KDL-QKLVSVHFLSKDLGDYLLNERPG 276 (455)
Q Consensus 201 ~~-~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
.. +++.+.|++. .+|+ ..++++|+||+|||.+|.||++++...... ..+ ..+. ....... . .+.
T Consensus 130 ~~~~~~~~~V~~~--~~g~--~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~--~l~~~~~-----~-~~~ 197 (390)
T TIGR02360 130 HDLAGDRPYVTFE--RDGE--RHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWL--GILSETP-----P-VSH 197 (390)
T ss_pred EecCCCccEEEEE--ECCe--EEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceE--EEecCCC-----C-CCC
Confidence 54 4555566653 1443 236899999999999999999985432110 011 1111 1111100 0 111
Q ss_pred eEEEEEccCceEEEEeecC-CCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEE----EeeceEeceeee
Q 012845 277 MLFFIFNTEAIGVLVAHDL-KEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI----DIKPWVMHAEVA 351 (455)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~ 351 (455)
...+.....++ .+..... ....+.+.++. ......|..+.+.+.+.+.+.......... .....++.....
T Consensus 198 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (390)
T TIGR02360 198 ELIYSNHERGF-ALCSMRSATRSRYYVQVPL---TDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEKSIAPLRSFVC 273 (390)
T ss_pred ceEEEeCCCce-EEEeccCCCcceEEEEcCC---CCChhhCChhHHHHHHHHhcCchhhhhhccCCccceeeeeHHhhcc
Confidence 11222222222 2223221 22234443321 223444554444555544432111111000 011122333344
Q ss_pred cccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (455)
Q Consensus 352 ~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~ 431 (455)
++|. .+||+|||||||.|+|+.|||+|+||+||.+|+++|.+... .+...+|+.|++.|++|+..+++.|+.+-..+
T Consensus 274 ~~~~--~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~-~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~ 350 (390)
T TIGR02360 274 EPMQ--YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ-EGSSAGIEGYSARALARVWKAERFSWWMTSLL 350 (390)
T ss_pred ccCc--cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554 49999999999999999999999999999999999987532 34578999999999999999999999998888
Q ss_pred hcccc
Q 012845 432 MEVPS 436 (455)
Q Consensus 432 ~~~~~ 436 (455)
|.+++
T Consensus 351 ~~~~~ 355 (390)
T TIGR02360 351 HRFPD 355 (390)
T ss_pred cCCCC
Confidence 88774
No 32
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=9.2e-37 Score=305.32 Aligned_cols=341 Identities=16% Similarity=0.192 Sum_probs=218.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
.||+||||||+|+++|+.|+++|++|+||||.+.....+.++.+.+++++.|+++ |+++.+.+.+.+...+. +. +
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~---~~-~ 75 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRM-GITDQLREAGYQIEHVR---SV-D 75 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHc-CCHHHHHhccCCccceE---EE-c
Confidence 4899999999999999999999999999999987766677788889999999999 99999988776654322 11 2
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~ 203 (455)
.+|..+...+... ... ........+.|..|.+.|.+.+.. ++ +++++++|++++.+
T Consensus 76 ~~g~~~~~~~~~~---~~~-~~g~~~~~i~r~~l~~~L~~~~~~-~v-------------------~i~~~~~v~~i~~~ 131 (391)
T PRK07588 76 PTGRRKADLNVDS---FRR-MVGDDFTSLPRGDLAAAIYTAIDG-QV-------------------ETIFDDSIATIDEH 131 (391)
T ss_pred CCCCEEEEecHHH---ccc-cCCCceEEEEHHHHHHHHHHhhhc-Ce-------------------EEEeCCEEeEEEEC
Confidence 2344332222110 000 001123568899999999886643 44 99999999999988
Q ss_pred CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEEc
Q 012845 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (455)
Q Consensus 204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (455)
++++.+++. +|+ ++++|+||+|||.+|.+|+.+.........+............. ....+..+.....
T Consensus 132 ~~~v~v~~~---~g~----~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~ 200 (391)
T PRK07588 132 RDGVRVTFE---RGT----PRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGY----RPRDERTYVLYNE 200 (391)
T ss_pred CCeEEEEEC---CCC----EEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCC----CCCCCceEEEEeC
Confidence 888877766 665 67899999999999999998632222111222222111111110 0111222222233
Q ss_pred cCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCC-CCCC---eeEEE-eec--e-Eeceeeecccc
Q 012845 284 TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGW-ELSD---IDVID-IKP--W-VMHAEVAEKFL 355 (455)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~~~~-~~~--~-~~~~~~~~~~~ 355 (455)
++.....+ |...+...+.+....+. ....++.+...+.+.+.+.. .... .+... ... + +......+.|.
T Consensus 201 ~g~~~~~~--p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 277 (391)
T PRK07588 201 VGRQVARV--ALRGDRTLFLFIFRAEH-DNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWS 277 (391)
T ss_pred CCCEEEEE--ecCCCCeEEEEEEEcCC-ccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccc
Confidence 44333333 43344433333222221 12234444455555544331 1110 01110 001 1 12222344554
Q ss_pred cCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (455)
Q Consensus 356 ~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~ 431 (455)
.+||+|||||||.|+|+.|||+|+||+||..|++.|.... .+...+|+.|++.|++++..++..++.+-..+
T Consensus 278 --~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~--~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~ 349 (391)
T PRK07588 278 --RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG--GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVF 349 (391)
T ss_pred --cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 4999999999999999999999999999999999997531 24578999999999999999999887554433
No 33
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=3e-36 Score=303.36 Aligned_cols=349 Identities=20% Similarity=0.283 Sum_probs=231.9
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcC-CCcccccce
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLWRKF 118 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~-~~~~~~~~~ 118 (455)
+..++||+||||||+|+++|+.|+++|++|+|||+++......++..+++.+.++|+++ |+++.+.+.. .+... .
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~l-G~~~~~~~~~~~~~~~---~ 78 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDEL-GLLERFLELPHQKVRT---L 78 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHc-CChhHHhhcccceeee---E
Confidence 35679999999999999999999999999999999876555567889999999999999 9999887633 22221 1
Q ss_pred EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEE
Q 012845 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHEC 197 (455)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v 197 (455)
.+. ..+......+.... . ........+.+..+.+.|.+.+.+. |+ +++++++|
T Consensus 79 ~~~--~~~~~~~~~~~~~~-~----~~~~~~~~v~~~~l~~~L~~~~~~~~~v-------------------~i~~~~~v 132 (407)
T PRK06185 79 RFE--IGGRTVTLADFSRL-P----TPYPYIAMMPQWDFLDFLAEEASAYPNF-------------------TLRMGAEV 132 (407)
T ss_pred EEE--ECCeEEEecchhhc-C----CCCCcEEEeehHHHHHHHHHHHhhCCCc-------------------EEEeCCEE
Confidence 111 12221111111000 0 0011234578889999999988775 44 89999999
Q ss_pred EEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCc
Q 012845 198 VSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG 276 (455)
Q Consensus 198 ~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
+++..+++.+. +.+.. .+|+ .++++|+||+|||.+|.+|++++.......+.+..+...... . ...+.
T Consensus 133 ~~~~~~~~~v~~v~~~~-~~g~---~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~-~------~~~~~ 201 (407)
T PRK06185 133 TGLIEEGGRVTGVRART-PDGP---GEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPR-E------PDDPE 201 (407)
T ss_pred EEEEEeCCEEEEEEEEc-CCCc---EEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCC-C------CCCCc
Confidence 99988776653 44431 1332 378999999999999999999987766555544433322111 0 11222
Q ss_pred eEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCC---CCCee-EEEeeceEeceeeec
Q 012845 277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE---LSDID-VIDIKPWVMHAEVAE 352 (455)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~-~~~~~~~~~~~~~~~ 352 (455)
..+..+.+++...+++.+ ....+.|..+... ...+...+.+.+.+.+...+++. ..... ......+++.....+
T Consensus 202 ~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~ 279 (407)
T PRK06185 202 SLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGG-YAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLR 279 (407)
T ss_pred ccceEecCCcEEEEEcCC-CeEEEEEEecCCC-chhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccc
Confidence 344566666655555443 2222233332111 11222334445555555543331 11111 122234555555666
Q ss_pred ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC-CCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFRAA 431 (455)
Q Consensus 353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~-~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~ 431 (455)
.+.. +|++|||||||.++|++|||+|+||+||..|++.|.+.++.. .....|+.|++.|+++...++..+....+.+
T Consensus 280 ~~~~--~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~ 357 (407)
T PRK06185 280 RWHR--PGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQRRL 357 (407)
T ss_pred cccC--CCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 6664 899999999999999999999999999999999999877543 3458999999999999999999988887765
Q ss_pred hc
Q 012845 432 ME 433 (455)
Q Consensus 432 ~~ 433 (455)
.+
T Consensus 358 ~~ 359 (407)
T PRK06185 358 LA 359 (407)
T ss_pred cc
Confidence 53
No 34
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=302.89 Aligned_cols=343 Identities=18% Similarity=0.256 Sum_probs=227.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-----cccccChhHHHHHHhhhchHHHHHhcC-CCcccc
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-----QAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLW 115 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~-----~~~~l~~~~~~~l~~~~gl~~~l~~~~-~~~~~~ 115 (455)
+++||+||||||+|+++|+.|++.|++|+||||.+.+...+ +...+++++++.|+++ |+++.+.... .+...
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~~- 81 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL-GVWQALDAARLAPVYD- 81 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc-CchhhhhhhcCCcceE-
Confidence 46899999999999999999999999999999998765433 3478899999999999 9998875422 23221
Q ss_pred cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (455)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~ 195 (455)
..+.....+.. .... .. ...+.....+++..|.+.|.+.+.+.|. ++++ ++
T Consensus 82 --~~~~~~~~~~~----~~~~---~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~------------------v~~~-~~ 132 (388)
T PRK07608 82 --MRVFGDAHARL----HFSA---YQ-AGVPQLAWIVESSLIERALWAALRFQPN------------------LTWF-PA 132 (388)
T ss_pred --EEEEECCCcee----Eeec---cc-cCCCCCEEEEEhHHHHHHHHHHHHhCCC------------------cEEE-cc
Confidence 11211111111 1000 00 0012234567899999999999988772 2777 99
Q ss_pred EEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCC
Q 012845 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (455)
Q Consensus 196 ~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (455)
+|++++.+++.+.+++. +|. ++.+|+||+|||.+|.+|+.++.......+....+...+.... ...
T Consensus 133 ~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 198 (388)
T PRK07608 133 RAQGLEVDPDAATLTLA---DGQ----VLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER-------PHR 198 (388)
T ss_pred eeEEEEecCCeEEEEEC---CCC----EEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC-------CCC
Confidence 99999887787777765 554 7899999999999999999998765544444433333332211 122
Q ss_pred ceEEEEEccCceEEEEeecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHhhCCCCCCeeEE-EeeceEeceeeecc
Q 012845 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEK 353 (455)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 353 (455)
...+..+.+++..++++.+ .+.+.+.+...... ......+++.+.+.+.............. ....+++.....+.
T Consensus 199 ~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (388)
T PRK07608 199 GTAYQWFRDDGILALLPLP--DGHVSMVWSARTAHADELLALSPEALAARVERASGGRLGRLECVTPAAGFPLRLQRVDR 276 (388)
T ss_pred CEEEEEecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHhcCCceecCCcceeecchhhhhh
Confidence 3334444555555555443 34433322211110 11122344555665555433222222221 12234544444556
Q ss_pred cccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc--CCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK--DIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (455)
Q Consensus 354 ~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~--~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~ 431 (455)
|. .+||+|||||||.|+|++|||+|+||+||..|+++|..... +....++|+.|+++|++++..++..++.....+
T Consensus 277 ~~--~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~ 354 (388)
T PRK07608 277 LV--APRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLF 354 (388)
T ss_pred hh--cCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 48999999999999999999999999999999999987642 222358999999999999999999988777766
Q ss_pred hc
Q 012845 432 ME 433 (455)
Q Consensus 432 ~~ 433 (455)
+.
T Consensus 355 ~~ 356 (388)
T PRK07608 355 AL 356 (388)
T ss_pred cC
Confidence 54
No 35
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=1.2e-36 Score=305.16 Aligned_cols=348 Identities=21% Similarity=0.224 Sum_probs=218.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
+++.||+||||||+||++|+.|++.|++|+||||.+.+...++++.|+++++++|+++ |+++.+...+.+... +.+
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~~~~~~~~~~---~~~ 77 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDAL-GVGEAARQRAVFTDH---LTM 77 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHc-CChHHHHhhccCCcc---eEE
Confidence 4568999999999999999999999999999999998888889999999999999999 999988776544322 222
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
.....+..+...+... .+.... ......+.|..|.+.|.+.+.+.+. ++++++++|+++
T Consensus 78 ~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~~------------------v~~~~~~~v~~i 136 (396)
T PRK08163 78 MDAVDAEEVVRIPTGQ--AFRARF-GNPYAVIHRADIHLSLLEAVLDHPL------------------VEFRTSTHVVGI 136 (396)
T ss_pred EeCCCCCEEEEeccch--hHHHhc-CCcEEEEEHHHHHHHHHHHHHhcCC------------------cEEEeCCEEEEE
Confidence 2222333332221110 000000 1123467899999999999987652 389999999999
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (455)
+.+++++.+++. +|. ++.+|+||+|||.+|.+|+.+... .........+............. .......
T Consensus 137 ~~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~ 205 (396)
T PRK08163 137 EQDGDGVTVFDQ---QGN----RWTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDL---RINAPVL 205 (396)
T ss_pred ecCCCceEEEEc---CCC----EEecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchh---ccCccEE
Confidence 987777777665 554 789999999999999999988322 11111111111111111111111 1111122
Q ss_pred EEccCceEEEEeecCCCCe-EEEEeecCCCC--CC-CCCCCHHHHHHHHHHhhCCCCCCeeEEE----eeceEec-eeee
Q 012845 281 IFNTEAIGVLVAHDLKEGE-FILQVPFYPPQ--QN-LEDFSPEICEKLIFKLVGWELSDIDVID----IKPWVMH-AEVA 351 (455)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~-~~~~ 351 (455)
...++...+. ++...+. +.+.+....+. .. ....+.+.+.+.+ .++.+....++. ...+... ....
T Consensus 206 ~~g~~~~~~~--~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (396)
T PRK08163 206 WAGPHCHLVH--YPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYF---EGIHPRPRQMLDKPTSWKRWATADREPV 280 (396)
T ss_pred EEcCCceEEE--EEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHH---cCCChHHHHHHhcCCceeEccccCCCcc
Confidence 2233333333 3333333 22222221111 11 1111222222222 222211111110 0111111 1233
Q ss_pred cccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (455)
Q Consensus 352 ~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~ 431 (455)
+.|. .+||+|||||||.|+|+.|||+|+||+||..|+++|... ..+...+|+.|++.|++++..++..++.....+
T Consensus 281 ~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~ 356 (396)
T PRK08163 281 AKWS--TGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC--DGDAEAAFALYESVRIPRTARVVLSAREMGRIY 356 (396)
T ss_pred cccc--cCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 4554 489999999999999999999999999999999999752 334678999999999999999999999877766
Q ss_pred hc
Q 012845 432 ME 433 (455)
Q Consensus 432 ~~ 433 (455)
+.
T Consensus 357 ~~ 358 (396)
T PRK08163 357 HA 358 (396)
T ss_pred CC
Confidence 53
No 36
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=5.6e-36 Score=298.16 Aligned_cols=340 Identities=20% Similarity=0.226 Sum_probs=221.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
.+..||+||||||+||++|+.|++.|++|+||||.+.+...+.+..+++++++.|+++ |+.+.+.+.+.+...+. +
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~-gl~~~~~~~~~~~~~~~---~ 77 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALREL-GVLDECLEAGFGFDGVD---L 77 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHc-CCHHHHHHhCCCccceE---E
Confidence 3467999999999999999999999999999999998887888999999999999999 99998887665543221 1
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
. +..|..+...+...... .. ......+.|..|.+.|.+.+.+.|+ +++++++|+++
T Consensus 78 ~-~~~g~~~~~~~~~~~~~--~~--~~~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i 133 (375)
T PRK06847 78 F-DPDGTLLAELPTPRLAG--DD--LPGGGGIMRPALARILADAARAAGA-------------------DVRLGTTVTAI 133 (375)
T ss_pred E-CCCCCEEEecCcccccc--cC--CCCcccCcHHHHHHHHHHHHHHhCC-------------------EEEeCCEEEEE
Confidence 1 23444333222110000 00 0123568899999999999988886 89999999999
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhc-CCCccCCcccceeEEEEEecCCcccccccCCCceEE
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (455)
+.+++.+.+.+. +|+ ++.+|+||+|||.+|.+|+++ +.... ..+.............. ..... .
T Consensus 134 ~~~~~~~~v~~~---~g~----~~~ad~vI~AdG~~s~~r~~l~~~~~~-~~~~g~~~~~~~~~~~~------~~~~~-~ 198 (375)
T PRK06847 134 EQDDDGVTVTFS---DGT----TGRYDLVVGADGLYSKVRSLVFPDEPE-PEYTGQGVWRAVLPRPA------EVDRS-L 198 (375)
T ss_pred EEcCCEEEEEEc---CCC----EEEcCEEEECcCCCcchhhHhcCCCCC-ceeccceEEEEEecCCC------Cccce-E
Confidence 987777777665 664 789999999999999999988 32211 11111111111111110 01111 2
Q ss_pred EEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhC-CCCCCe----eEE----EeeceEece-e
Q 012845 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG-WELSDI----DVI----DIKPWVMHA-E 349 (455)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~----~~~----~~~~~~~~~-~ 349 (455)
....++....+ ++...+...+.+....+.. ..++.+.+.+.+.+.+. +..... +.. ....+++.. .
T Consensus 199 ~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (375)
T PRK06847 199 MYLGPTTKAGV--VPLSEDLMYLFVTEPRPDN--PRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLL 274 (375)
T ss_pred EEeCCCcEEEE--EcCCCCeEEEEEeccCccc--ccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhcc
Confidence 22333333322 3444343333322221111 12333333344443322 111000 000 111122222 1
Q ss_pred eecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429 (455)
Q Consensus 350 ~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~ 429 (455)
...+|. .+||+|||||||.|+|+.|||+|+||+||..|+++|.+ .....++|+.|++.|+++++.++..|+.+-.
T Consensus 275 ~~~~~~--~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~---~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~ 349 (375)
T PRK06847 275 VPAPWH--RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR---HDSLEAALQAYYARRWERCRMVVEASARIGR 349 (375)
T ss_pred CCCCcc--CCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 223454 49999999999999999999999999999999999975 3456789999999999999999999998776
Q ss_pred HHh
Q 012845 430 AAM 432 (455)
Q Consensus 430 ~~~ 432 (455)
..+
T Consensus 350 ~~~ 352 (375)
T PRK06847 350 IEI 352 (375)
T ss_pred eec
Confidence 544
No 37
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=3.7e-36 Score=298.00 Aligned_cols=342 Identities=17% Similarity=0.169 Sum_probs=212.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
.||+||||||+|+++|+.|+++|++|+||||.+.+...+.++.+.+++++.|+++ |+++.+.+.+.+... ..+. +
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~l-Gl~~~~~~~~~~~~~---~~~~-~ 76 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERM-GLLAAAQEHKTRIRG---ASFV-D 76 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhc-CCHHHHHhhccCccc---eEEE-e
Confidence 3899999999999999999999999999999988877778888999999999999 999998776654432 1121 2
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~ 203 (455)
.+|..+........ ..... ......+.|..|.+.|.+.+ ..|+ +++++++|++++.+
T Consensus 77 ~~g~~~~~~~~~~~--~~~~~-~~~~~~i~R~~L~~~l~~~~-~~~v-------------------~i~~~~~v~~i~~~ 133 (372)
T PRK05868 77 RDGNELFRDTESTP--TGGPV-NSPDIELLRDDLVELLYGAT-QPSV-------------------EYLFDDSISTLQDD 133 (372)
T ss_pred CCCCEEeecccccc--cCCCC-CCceEEEEHHHHHHHHHHhc-cCCc-------------------EEEeCCEEEEEEec
Confidence 33433322111000 00000 11123567888888776543 3344 89999999999887
Q ss_pred CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccC-CcccceeEEEEEecCCcccccccCCCceEEEEE
Q 012845 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG-EKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (455)
Q Consensus 204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (455)
++.+.+++. +|+ ++++|+||+|||.+|.+|+++...... ...+..+. ..+..... . .......+..
T Consensus 134 ~~~v~v~~~---dg~----~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~-~~~~~~~~---~--~~~~~~~~~~ 200 (372)
T PRK05868 134 GDSVRVTFE---RAA----AREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHA-AIFTVPNF---L--ELDYWQTWHY 200 (372)
T ss_pred CCeEEEEEC---CCC----eEEeCEEEECCCCCchHHHHhcCCcccceeecceEE-EEEEcCCC---C--CCCcceEEEe
Confidence 787877776 665 679999999999999999998432211 11111111 11111111 1 1122222233
Q ss_pred ccCceEEEEeecCCCC-eEEEEeecCCCCCCCCCCCHHHHHHHHHHhh---CCCCCC-eeEEE-eece--E-eceeeecc
Q 012845 283 NTEAIGVLVAHDLKEG-EFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSD-IDVID-IKPW--V-MHAEVAEK 353 (455)
Q Consensus 283 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~-~~~~~-~~~~--~-~~~~~~~~ 353 (455)
.++....+++...... ...+.+..... .......+...+.+.+.+ +|.... .+.+. ...+ + +.....+.
T Consensus 201 g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
T PRK05868 201 GDSTMAGVYSARNNTEARAALAFMDTEL--RIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDR 278 (372)
T ss_pred cCCcEEEEEecCCCCceEEEEEEecCCc--ccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCC
Confidence 4444333333322222 11122111110 111111222233333333 343111 11111 1111 1 22233455
Q ss_pred cccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432 (455)
Q Consensus 354 ~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 432 (455)
|. .+||+|||||||+|+|+.|||+|+||+||.+|+++|.+. ..+...+|+.|++.+++++...+.........+.
T Consensus 279 w~--~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~--~~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~ 353 (372)
T PRK05868 279 WS--RGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--GDDYQLGFANYHAEFHGFVERNQWLVSDNIPGGA 353 (372)
T ss_pred CC--CCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhHHHHHhhhhhhccCCccc
Confidence 55 499999999999999999999999999999999999763 3357899999999999998888887766555544
No 38
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=4.4e-36 Score=301.01 Aligned_cols=343 Identities=19% Similarity=0.300 Sum_probs=224.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC-----CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcc
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF-----STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVD 113 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~-----~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~ 113 (455)
+++||+||||||+|+++|+.|+++ |++|+||||.... ....++..+++++++.|+++ |+++.+...+.+..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~ 80 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL-GVWQALADCATPIT 80 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC-CChhhhHhhcCCcc
Confidence 568999999999999999999998 9999999996322 22346889999999999999 99999987665543
Q ss_pred cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEE
Q 012845 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREIL 192 (455)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~ 192 (455)
... +. . .+.. ..... ...+. ..+.....+.|..|.+.|.+.+.+. |+ +++
T Consensus 81 ~~~---~~-~-~~~~-~~~~~-~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~g~-------------------~~~ 131 (395)
T PRK05732 81 HIH---VS-D-RGHA-GFVRL-DAEDY---GVPALGYVVELHDVGQRLFALLDKAPGV-------------------TLH 131 (395)
T ss_pred EEE---Ee-c-CCCC-ceEEe-ehhhc---CCCccEEEEEhHHHHHHHHHHHhcCCCc-------------------EEE
Confidence 211 11 1 1110 00000 00000 0111234578889999999988764 44 899
Q ss_pred eccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccccccc
Q 012845 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN 272 (455)
Q Consensus 193 ~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (455)
++++|+++..+++++.+++. ++. .+.+|+||+|||.+|.+|+.++.......+.+..+...+.....
T Consensus 132 ~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~------ 198 (395)
T PRK05732 132 CPARVANVERTQGSVRVTLD---DGE----TLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA------ 198 (395)
T ss_pred cCCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC------
Confidence 99999999887887777765 554 68999999999999999999986654433333333222221111
Q ss_pred CCCceEEEEEccCceEEEEeecCCCCeE--EEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCee-EEEeeceEecee
Q 012845 273 ERPGMLFFIFNTEAIGVLVAHDLKEGEF--ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDID-VIDIKPWVMHAE 349 (455)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~ 349 (455)
.....+..+.+.+...+++ ...+.+ .|..+... ......++.+.+.+.+.+.+++...... ......|++...
T Consensus 199 -~~~~~~~~~~~~g~~~~~p--~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (395)
T PRK05732 199 -HQGRAFERFTEHGPLALLP--MSDGRCSLVWCHPLED-AEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAYPLALV 274 (395)
T ss_pred -CCCEEEEeecCCCCEEEeE--CCCCCeEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHHhhhcceeecCCcceeccccc
Confidence 1112222233444333333 334443 33322111 1112234444455555555544322221 112233444444
Q ss_pred eecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC-C--CchhhhhHHHhhhHHHHHhHHhHHH
Q 012845 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-A--PASILNTYETERKPIAEFNTALSVQ 426 (455)
Q Consensus 350 ~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~-~--~~~al~~Y~~~r~~~~~~~~~~s~~ 426 (455)
..+.|. .+|++|+|||||.++|++|||+|+||+||..|+++|...+++. + ...+|+.|+++|+++...++..++.
T Consensus 275 ~~~~~~--~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~ 352 (395)
T PRK05732 275 TAAQQI--SHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDG 352 (395)
T ss_pred chhhhc--cCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554 4999999999999999999999999999999999998776432 2 3479999999999999999999988
Q ss_pred HHHHHhc
Q 012845 427 NFRAAME 433 (455)
Q Consensus 427 ~~~~~~~ 433 (455)
..+.+..
T Consensus 353 ~~~~~~~ 359 (395)
T PRK05732 353 LVRLFAN 359 (395)
T ss_pred HHHHHcC
Confidence 8776654
No 39
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=8e-36 Score=297.85 Aligned_cols=338 Identities=14% Similarity=0.119 Sum_probs=203.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~-~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~ 119 (455)
++..+|+||||||+||++|+.|++.|++|+||||.+.+ ...+.++.+.++++++|+++ |+.+.. ..+.+... .
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~-~~~~~~~~---~- 77 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEA-GVALPA-DIGVPSRE---R- 77 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHc-CCCccc-ccccCccc---e-
Confidence 45689999999999999999999999999999998754 34566788999999999999 987654 33333211 1
Q ss_pred EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (455)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 199 (455)
......|..+...+ .....+.+..|.+.|.+.+. +..++++++|++
T Consensus 78 ~~~~~~g~~~~~~~-------------~~~~~~~~~~l~~~L~~~~~---------------------~~~i~~~~~v~~ 123 (386)
T PRK07236 78 IYLDRDGRVVQRRP-------------MPQTQTSWNVLYRALRAAFP---------------------AERYHLGETLVG 123 (386)
T ss_pred EEEeCCCCEeeccC-------------CCccccCHHHHHHHHHHhCC---------------------CcEEEcCCEEEE
Confidence 11123343332111 01122456677777765432 247999999999
Q ss_pred eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecC-CcccccccCCCceE
Q 012845 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGML 278 (455)
Q Consensus 200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 278 (455)
++.+++++.+++. +|+ ++++|+||+|||.+|.+|+++... ....+............ ..............
T Consensus 124 i~~~~~~v~v~~~---~g~----~~~ad~vIgADG~~S~vR~~l~~~-~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~ 195 (386)
T PRK07236 124 FEQDGDRVTARFA---DGR----RETADLLVGADGGRSTVRAQLLPD-VRPTYAGYVAWRGLVDEAALPPEARAALRDRF 195 (386)
T ss_pred EEecCCeEEEEEC---CCC----EEEeCEEEECCCCCchHHHHhCCC-CCCCcCCeEEEEEecchHHcCchhhhhcccce
Confidence 9988888877776 665 789999999999999999998322 22222222111111111 11110000011122
Q ss_pred EEEEccCceEEEEeecCCC-------C--eEEEEeecCCCCC---CC--------------CCCCHHHHHHHHHHhh-C-
Q 012845 279 FFIFNTEAIGVLVAHDLKE-------G--EFILQVPFYPPQQ---NL--------------EDFSPEICEKLIFKLV-G- 330 (455)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~---~~--------------~~~~~~~~~~~l~~~~-~- 330 (455)
.+...++.....+..+... . .+.|..+...... .+ ....++.. +.+.+.. .
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 274 (386)
T PRK07236 196 TFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVL-AELRDDAAEL 274 (386)
T ss_pred EEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHH-HHHHHHHHHh
Confidence 2223344333333333211 1 2333333222100 00 00112222 2222211 1
Q ss_pred CCCCCeeEEE----eeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhh
Q 012845 331 WELSDIDVID----IKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASIL 406 (455)
Q Consensus 331 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al 406 (455)
+.+...+++. ...+++.....+.|. .+|++|||||||.|+|+.|||+|+||+||..|+++|... ..+...+|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~--~~~~~~al 350 (386)
T PRK07236 275 LAPVFAELVEATAQPFVQAIFDLEVPRMA--FGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAA--AGDIDAAL 350 (386)
T ss_pred cCHHHHHHHhhCcCchhhhhhcccCcccc--cCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhc--ccchHHHH
Confidence 1110111100 011222222234444 499999999999999999999999999999999999764 23367999
Q ss_pred hhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845 407 NTYETERKPIAEFNTALSVQNFRAA 431 (455)
Q Consensus 407 ~~Y~~~r~~~~~~~~~~s~~~~~~~ 431 (455)
+.|++.|+++++.++..|+..-...
T Consensus 351 ~~Ye~~R~~r~~~~~~~s~~~~~~~ 375 (386)
T PRK07236 351 AAWEAERLAVGAAIVARGRRLGARL 375 (386)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998665544
No 40
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=4.8e-36 Score=302.24 Aligned_cols=347 Identities=19% Similarity=0.273 Sum_probs=212.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCc-ccccce--E
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPV-DLWRKF--I 119 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~-~~~~~~--~ 119 (455)
.+|+||||||+||++|+.|+++| ++|+||||.+.....+.++.|.++++++|+++ |+.+.+...+... ..+... .
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~l-g~~~~~~~~~~~~~~~~~~~~~~ 79 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGL-GLGEAYTQVADSTPAPWQDIWFE 79 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHc-CChhHHHHHhcCCCccCcceeEE
Confidence 36999999999999999999998 69999999998888888999999999999999 9988887654221 111111 1
Q ss_pred EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (455)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 199 (455)
+.....+..... .. ........+.|..|.+.|.+.+.. ..++++++|++
T Consensus 80 ~~~~~~~~~~~~---~~-------~~~~~~~~i~R~~l~~~L~~~~~~---------------------~~v~~~~~v~~ 128 (414)
T TIGR03219 80 WRNGSDASYLGA---TI-------APGVGQSSVHRADFLDALLKHLPE---------------------GIASFGKRATQ 128 (414)
T ss_pred EEecCccceeee---ec-------cccCCcccCCHHHHHHHHHHhCCC---------------------ceEEcCCEEEE
Confidence 111111111110 00 001112357899999999887643 26889999999
Q ss_pred eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCC----ccCCcccceeEEEEEe-cCCcccc-----
Q 012845 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID----LVGEKDLQKLVSVHFL-SKDLGDY----- 269 (455)
Q Consensus 200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~----~~~~~~~~~~~~~~~~-~~~~~~~----- 269 (455)
++..++++.+++. +|+ ++++|+||+|||.+|.||+.+... .....+.......... .......
T Consensus 129 i~~~~~~~~v~~~---~g~----~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~ 201 (414)
T TIGR03219 129 IEEQAEEVQVLFT---DGT----EYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAG 201 (414)
T ss_pred EEecCCcEEEEEc---CCC----EEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhcccc
Confidence 9988888878776 665 789999999999999999988321 1111111111111111 1111000
Q ss_pred cccCCCceEEEEEccCceEEEEeecCCCCeEE-EEeecCCCCC------CCCCCCH-HHHHHHHHHhhCCCCCCeeEE--
Q 012845 270 LLNERPGMLFFIFNTEAIGVLVAHDLKEGEFI-LQVPFYPPQQ------NLEDFSP-EICEKLIFKLVGWELSDIDVI-- 339 (455)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~-~~~~~~l~~~~~~~~~~~~~~-- 339 (455)
..........+...+++...++ +...+... +......+.. .-..+.. ....++++.+.+|.+...+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~--p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~ 279 (414)
T TIGR03219 202 LDEHLVDVPQMYLGLDGHILTF--PVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLEC 279 (414)
T ss_pred ccccccccceEEEcCCCeEEEE--ECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHh
Confidence 0000111112223444433333 33333322 2211111110 0011211 112223333222221111100
Q ss_pred --EeeceEece-eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhH-cCCCCchhhhhHHHhhhH
Q 012845 340 --DIKPWVMHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIAPASILNTYETERKP 415 (455)
Q Consensus 340 --~~~~~~~~~-~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~-~~~~~~~al~~Y~~~r~~ 415 (455)
....|.+.. ...+.|. .+||+|||||||.|.|+.|||+|+||+||..|+++|.... ++.+...+|+.|++.|++
T Consensus 280 ~~~~~~~~~~~~~~~~~w~--~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~ 357 (414)
T TIGR03219 280 IPAPTLWALHDLAELPGYV--HGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRP 357 (414)
T ss_pred CCCCCceeeeeccccccee--eCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhH
Confidence 111233322 2334555 4999999999999999999999999999999999998753 234567999999999999
Q ss_pred HHHHhHHhHHHHHHHHhc
Q 012845 416 IAEFNTALSVQNFRAAME 433 (455)
Q Consensus 416 ~~~~~~~~s~~~~~~~~~ 433 (455)
++.++++.|+......+.
T Consensus 358 r~~~~~~~s~~~~~~~~~ 375 (414)
T TIGR03219 358 RACRVQRTSREAGELYEL 375 (414)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999988776653
No 41
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=285.38 Aligned_cols=337 Identities=20% Similarity=0.208 Sum_probs=199.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
+.+|+|||||++||++|++|.|.|++|+|||++..++..+.++.+.-+++++|+.+ |+.+.+.+.+.|...+. ..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai-~~~e~i~~~gip~~~~v---~~~ 77 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAI-GLKEQIREQGIPLGGRV---LIH 77 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHc-ccHHHHHHhcCccccee---eee
Confidence 46899999999999999999999999999999988888888888888899999999 99999999888875432 344
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc------E
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH------E 196 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~------~ 196 (455)
..+|+...+.....+.+ ....+.|..+...++..+...+ .|+++. .
T Consensus 78 ~~sg~~~~~~~~~~~~~--------~i~r~~~r~ll~~lL~~a~~~~--------------------~ikf~~~~~~~~~ 129 (420)
T KOG2614|consen 78 GDSGKEVSRILYGEPDE--------YILRINRRNLLQELLAEALPTG--------------------TIKFHSNLSCTSK 129 (420)
T ss_pred cCCCCeeEecccCCchH--------HHHHHHHHHHHHHHHHhhcCCC--------------------eeecccccccccc
Confidence 55666655543332221 1234445455444444444443 455553 4
Q ss_pred EEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccc--ccccCC
Q 012845 197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD--YLLNER 274 (455)
Q Consensus 197 v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 274 (455)
...++.......+++. +|. ++++|++|||||++|.||++++.....+..++.+....+.....+. ......
T Consensus 130 ~~~~~~~~~~~~v~l~---~g~----~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~ 202 (420)
T KOG2614|consen 130 DVEIETLGKKLVVHLS---DGT----TVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIY 202 (420)
T ss_pred cceeeecccccceecC---CCc----EEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceeccc
Confidence 4445544455556655 675 8899999999999999999998665555566665555554443322 111122
Q ss_pred CceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHH---HHHhhCCCC----CCeeEEEeeceEec
Q 012845 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKL---IFKLVGWEL----SDIDVIDIKPWVMH 347 (455)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~----~~~~~~~~~~~~~~ 347 (455)
++..+....+......+.+......+.+..++..++.... ...+....+ +...+.... ....+....+|++-
T Consensus 203 ~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~-~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i 281 (420)
T KOG2614|consen 203 GNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKK-TSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLI 281 (420)
T ss_pred CCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhh-hHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCee
Confidence 2233322222222222222111222222222222222211 111111111 111111110 01111122233322
Q ss_pred eeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHH
Q 012845 348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427 (455)
Q Consensus 348 ~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~ 427 (455)
...+. .++|||+|||||+|.|+.|||+|+|+||+.+|+++|.++.++ ...+++.|++ .+...++.+.+...
T Consensus 282 ~~~~s-----~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d--~s~~~~~~s~--~~e~~~~ie~a~~~ 352 (420)
T KOG2614|consen 282 SVKCS-----PGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND--VSLAGEEYSR--ENESHAIIELAMYS 352 (420)
T ss_pred eeccC-----CCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc--hhccccceec--ccchhHHHHHHHHH
Confidence 11111 369999999999999999999999999999999999998653 3444455554 33333334433333
Q ss_pred H
Q 012845 428 F 428 (455)
Q Consensus 428 ~ 428 (455)
|
T Consensus 353 Y 353 (420)
T KOG2614|consen 353 Y 353 (420)
T ss_pred H
Confidence 3
No 42
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=1.6e-35 Score=302.89 Aligned_cols=341 Identities=17% Similarity=0.152 Sum_probs=210.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCC-CcccccceE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLWRKFI 119 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~-~~~~~~~~~ 119 (455)
...+||+||||||+|+++|+.|++.|++|+|+||.+.......+..+++++.+.|+++ |+++.+..... +. ..+.
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~L-Gl~d~l~~~~~~~~---~~~~ 116 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKL-GLEDCLEGIDAQKA---TGMA 116 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHc-CCcchhhhccCccc---ccEE
Confidence 4578999999999999999999999999999999876556677899999999999999 99998876432 22 2222
Q ss_pred EeecCCCCcc-ccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845 120 YCTSVTGPIL-GSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (455)
Q Consensus 120 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~ 198 (455)
... +|... ..++.. .... ........+.|..|.+.|++.+.+.+. ++++.+ +++
T Consensus 117 v~~--~g~~~~~~~~~~-~~~~---~~~~~g~~i~r~~l~~~L~~~a~~~~~------------------V~i~~g-tvv 171 (514)
T PLN02985 117 VYK--DGKEAVAPFPVD-NNNF---PYEPSARSFHNGRFVQRLRQKASSLPN------------------VRLEEG-TVK 171 (514)
T ss_pred EEE--CCEEEEEeCCCC-CcCC---CcccceeeeecHHHHHHHHHHHHhCCC------------------eEEEee-eEE
Confidence 211 23221 111100 0000 011223567899999999999987642 377755 567
Q ss_pred EeeecCCce-EEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCc-ccceeEEEEEecCCcccccccCCCc
Q 012845 199 SVSATDQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEK-DLQKLVSVHFLSKDLGDYLLNERPG 276 (455)
Q Consensus 199 ~i~~~~~~~-~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
++..+++.+ .|++.. .+|. +.++.+|+||+|||.+|.+|++++....... +...+. .... ....++
T Consensus 172 ~li~~~~~v~gV~~~~-~dG~--~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~-----~~~~----~~~~~~ 239 (514)
T PLN02985 172 SLIEEKGVIKGVTYKN-SAGE--ETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI-----SKNC----RLEEPE 239 (514)
T ss_pred EEEEcCCEEEEEEEEc-CCCC--EEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEE-----Eccc----cCCCCC
Confidence 665554432 344441 1332 3467899999999999999999975433211 111111 1111 011233
Q ss_pred eEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHH------------HHHHHHhhC--CCCCCeeEEEee
Q 012845 277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC------------EKLIFKLVG--WELSDIDVIDIK 342 (455)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~~~--~~~~~~~~~~~~ 342 (455)
..+.++.+.....++.......++.+.++.... ...+.... .+.+++.+. +... .++..
T Consensus 240 ~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~-~~~~~-- 312 (514)
T PLN02985 240 KLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNI----PSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEG-AHIKV-- 312 (514)
T ss_pred cceEEcCCCceEEEEEeCCCeEEEEEEEeCCCC----CCcChhhHHHHHHhccccccCHHHHHHHHhhcccc-cceee--
Confidence 334444454444444443333333344432211 11111111 112222221 1111 11111
Q ss_pred ceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhH---cCCCCchhhhhHHHhhhHHHHH
Q 012845 343 PWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL---KDIAPASILNTYETERKPIAEF 419 (455)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~---~~~~~~~al~~Y~~~r~~~~~~ 419 (455)
++........+ ..++++|||||||+|+|++|||||+|++||.+|++.|.+.. +.....++|+.|++.|++++..
T Consensus 313 -~p~~~l~~~~~--~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~ 389 (514)
T PLN02985 313 -VPTKRMSATLS--DKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSAT 389 (514)
T ss_pred -cCccccccccc--CCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhH
Confidence 11111111122 24899999999999999999999999999999999998642 1123468999999999999999
Q ss_pred hHHhHHHHHHHHh
Q 012845 420 NTALSVQNFRAAM 432 (455)
Q Consensus 420 ~~~~s~~~~~~~~ 432 (455)
++.+|+.+|..+.
T Consensus 390 i~~la~al~~~f~ 402 (514)
T PLN02985 390 VNTLGNAFSQVLV 402 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999774
No 43
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=6.6e-35 Score=300.85 Aligned_cols=359 Identities=18% Similarity=0.211 Sum_probs=217.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCC---cccccChhHHHHHHhhhch--HHHHHhcCCCccc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHP---QAHFINNRYALVFRKLDGL--AEEIERSQPPVDL 114 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~-~~~~---~~~~l~~~~~~~l~~~~gl--~~~l~~~~~~~~~ 114 (455)
.++++|+||||||+||++|+.|+++|++|+||||.+.. ...+ +++.|.++++++|+++ |+ .+++.+.+.....
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~L-Gl~~~e~l~~~g~~~~~ 157 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAI-DIDVAEQVMEAGCITGD 157 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHc-CcchHHHHHhhcCcccc
Confidence 56789999999999999999999999999999998632 2222 4688999999999999 74 5666665543211
Q ss_pred ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (455)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~ 194 (455)
.. ..+.....|.....++...... . ........+.|..|.+.|.+.+.. ..++++
T Consensus 158 ~i-~~~~d~~~G~~~~~~~~~~~~~--~-~g~p~~~~I~R~~L~~~L~~alg~---------------------~~i~~g 212 (668)
T PLN02927 158 RI-NGLVDGISGSWYVKFDTFTPAA--S-RGLPVTRVISRMTLQQILARAVGE---------------------DVIRNE 212 (668)
T ss_pred ee-eeeeecCCCceEeecccccccc--c-cCCCeEEEEeHHHHHHHHHhhCCC---------------------CEEEcC
Confidence 00 0011112333222222111100 0 001124568999999999775432 257899
Q ss_pred cEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCC
Q 012845 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274 (455)
Q Consensus 195 ~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
++|++++..++.+.+++. +|+ ++++|+||+|||++|.+|+.+..... .. +..+..+......... ...
T Consensus 213 ~~V~~I~~~~d~VtV~~~---dG~----ti~aDlVVGADG~~S~vR~~l~g~~~-~~-~sG~~~~rgi~~~~p~---~~~ 280 (668)
T PLN02927 213 SNVVDFEDSGDKVTVVLE---NGQ----RYEGDLLVGADGIWSKVRNNLFGRSE-AT-YSGYTCYTGIADFIPA---DIE 280 (668)
T ss_pred CEEEEEEEeCCEEEEEEC---CCC----EEEcCEEEECCCCCcHHHHHhcCCCC-Cc-ccceEEEEEEcCCCcc---ccc
Confidence 999999988888887776 664 67999999999999999999832221 11 2222221111111110 001
Q ss_pred CceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE------eeceEece
Q 012845 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID------IKPWVMHA 348 (455)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~ 348 (455)
........++.. .++..+...+...|......+.... +......+++.+.+-+|.....+++. ...+.+..
T Consensus 281 ~~~~~~~~G~~~--~~v~~~v~~g~~~~~~f~~~p~~~~-~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd 357 (668)
T PLN02927 281 SVGYRVFLGHKQ--YFVSSDVGGGKMQWYAFHEEPAGGA-DAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYD 357 (668)
T ss_pred ccceEEEEcCCe--EEEEEcCCCCeEEEEEEEECCcccc-ccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEe
Confidence 111112222222 2333344444444433222111110 11111222222222233222111111 11233332
Q ss_pred e-eecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcC-------CCCchhhhhHHHhhhHHHHHh
Q 012845 349 E-VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-------IAPASILNTYETERKPIAEFN 420 (455)
Q Consensus 349 ~-~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~-------~~~~~al~~Y~~~r~~~~~~~ 420 (455)
. ....|. .+||+|+|||||.|+|+.|||+|+||+||..|+.+|.++.+. .+...+|+.|++.|++++..+
T Consensus 358 ~~p~~~W~--~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i 435 (668)
T PLN02927 358 RSPGFTWG--KGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAII 435 (668)
T ss_pred ccCCCccc--cCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 2 222443 599999999999999999999999999999999999886532 235689999999999999999
Q ss_pred HHhHHHHHHHHhccccccC--CCc
Q 012845 421 TALSVQNFRAAMEVPSALG--LDP 442 (455)
Q Consensus 421 ~~~s~~~~~~~~~~~~~~~--~~~ 442 (455)
+..++....++.....+++ ++|
T Consensus 436 ~~~ar~a~~~~~~~~~y~~~~~~p 459 (668)
T PLN02927 436 HAMARMAAIMASTYKAYLGVGLGP 459 (668)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCH
Confidence 9999999999888887755 544
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=1.7e-34 Score=296.61 Aligned_cols=347 Identities=16% Similarity=0.095 Sum_probs=205.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~-~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
..+||+||||||+|+++|+.|++.|++|+||||.+.. ..+..|..|++++.++|+++ |+++.+.....+... +.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~L-GL~d~l~~i~~~~~~---~~v 107 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKEL-GMEECAEGIGMPCFG---YVV 107 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHC-CChhhHhhcCcceee---eEE
Confidence 4689999999999999999999999999999998622 22456778999999999999 999999877666432 222
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
. +.+|.... .+.. .......+.+..+.+.|++.+.+... ++++++ +.+|+++
T Consensus 108 ~-~~~G~~~~-i~~~---------~~~~g~~~~rg~~~~~Lr~~a~~~~~----------------~~V~v~-~~~v~~l 159 (567)
T PTZ00367 108 F-DHKGKQVK-LPYG---------AGASGVSFHFGDFVQNLRSHVFHNCQ----------------DNVTML-EGTVNSL 159 (567)
T ss_pred E-ECCCCEEE-ecCC---------CCCceeEeEHHHHHHHHHHHHHhhcC----------------CCcEEE-EeEEEEe
Confidence 1 22233221 1110 01123445778888888887721100 123665 4578877
Q ss_pred eecCCc-----eEEEEEeccCC------------------cceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeE
Q 012845 201 SATDQC-----INVIASFLKEG------------------KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV 257 (455)
Q Consensus 201 ~~~~~~-----~~v~~~~~~~g------------------~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~ 257 (455)
..++.. ..|++...+.+ ....+++++|+||+|||.+|.+|++++.......+...+.
T Consensus 160 ~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~ 239 (567)
T PTZ00367 160 LEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFV 239 (567)
T ss_pred ccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEE
Confidence 554332 12333311100 0012478999999999999999999975433333333322
Q ss_pred EEEEecCCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCC-CCCCCHHHH--------HHHHHHh
Q 012845 258 SVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN-LEDFSPEIC--------EKLIFKL 328 (455)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~l~~~ 328 (455)
........ .+.++....++.+++..++++.. .+...+.+.+..+... ..+. .+.+ .+.+++.
T Consensus 240 g~~~~~~~------lp~~~~~~v~~g~~gpi~~yPl~--~~~~r~lv~~~~~~~p~~~~~-~~~l~~~~~p~l~~~l~~~ 310 (567)
T PTZ00367 240 GLVLKNVR------LPKEQHGTVFLGKTGPILSYRLD--DNELRVLVDYNKPTLPSLEEQ-SEWLIEDVAPHLPENMRES 310 (567)
T ss_pred EEEEeccc------CCCCCeeEEEEcCCceEEEEEcC--CCeEEEEEEecCCcCCChHHH-HHHHHHhhcccCcHHHHHH
Confidence 22221111 11233334445666555555443 3433333222211110 0000 0000 1111111
Q ss_pred hCCCCCCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc----CC----
Q 012845 329 VGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK----DI---- 400 (455)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~----~~---- 400 (455)
+........ ....++........+. .++++|||||||+|+|++|||+|+||+||.+|++.|..... +.
T Consensus 311 f~~~l~~~~--~l~~~p~~~~p~~~~~--~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~ 386 (567)
T PTZ00367 311 FIRASKDTK--RIRSMPNARYPPAFPS--IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMA 386 (567)
T ss_pred HHHhhcccC--CeEEeeHhhCCCccCC--CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHH
Confidence 100000000 1112222222222332 48999999999999999999999999999999999975431 11
Q ss_pred CCchhhh----hHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845 401 APASILN----TYETERKPIAEFNTALSVQNFRAAME 433 (455)
Q Consensus 401 ~~~~al~----~Y~~~r~~~~~~~~~~s~~~~~~~~~ 433 (455)
+...+|+ .|++.|+++...++.+|..+|+.+..
T Consensus 387 ~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~ 423 (567)
T PTZ00367 387 EIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS 423 (567)
T ss_pred HHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh
Confidence 1246677 99999999999999999999987665
No 45
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=8.3e-31 Score=264.19 Aligned_cols=341 Identities=13% Similarity=0.113 Sum_probs=199.8
Q ss_pred cccCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCccccc
Q 012845 37 IVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWR 116 (455)
Q Consensus 37 ~~~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~ 116 (455)
.++..+++||+||||||||+++|+.|+++|++|+|+||... ..+.|+.+|+. ..++++ ++++.+.... +.
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~l-gl~~~~~~~~--i~--- 102 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEF-DLPLDIIDRK--VT--- 102 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhh-cCcHHHHHHH--hh---
Confidence 33456789999999999999999999999999999999854 45678888875 455667 7776654321 10
Q ss_pred ceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccE
Q 012845 117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE 196 (455)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~ 196 (455)
...+. ...+..+.. +. . . ........++|..|++.|++++.+.|+ +++.+ +
T Consensus 103 ~~~~~-~p~~~~v~~-~~--~--~---~~~~~~~~v~R~~~d~~L~~~A~~~Ga-------------------~~~~~-~ 153 (450)
T PLN00093 103 KMKMI-SPSNVAVDI-GK--T--L---KPHEYIGMVRREVLDSFLRERAQSNGA-------------------TLING-L 153 (450)
T ss_pred hheEe-cCCceEEEe-cc--c--C---CCCCeEEEecHHHHHHHHHHHHHHCCC-------------------EEEec-e
Confidence 01111 111111100 00 0 0 001123458999999999999999887 77665 5
Q ss_pred EEEeeec---CCceEEEEEecc--CCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccc
Q 012845 197 CVSVSAT---DQCINVIASFLK--EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL 271 (455)
Q Consensus 197 v~~i~~~---~~~~~v~~~~~~--~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (455)
+++++.. ++.+.+++.... .+.+...++++|+||+|||.+|.+|+.++.... .....+........ ...
T Consensus 154 v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~~---~~~~~~~~~~~~~~--~~~- 227 (450)
T PLN00093 154 FTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGDY---DYAIAFQERIKIPD--DKM- 227 (450)
T ss_pred EEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCCc---ceeEEEEEEEeCCh--hhc-
Confidence 7777642 234556554210 001112378999999999999999999976421 11111111111110 000
Q ss_pred cCCCceEEEEE----ccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEec
Q 012845 272 NERPGMLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMH 347 (455)
Q Consensus 272 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 347 (455)
...+....+.+ .|+++.|+++.. + ...+.+..... ..+...+.+.+...........+.......+++
T Consensus 228 ~~~~~~~~~~~g~~~~p~~Y~WifP~g--~-~~~VG~g~~~~-----~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ip 299 (450)
T PLN00093 228 EYYEDLAEMYVGDDVSPDFYGWVFPKC--D-HVAVGTGTVVN-----KPAIKKYQRATRNRAKDKIAGGKIIRVEAHPIP 299 (450)
T ss_pred cccCCeEEEEeCCCCCCCceEEEEECC--C-cEEEEEEEccC-----CCChHHHHHHHHHHhhhhcCCCeEEEEEEEEcc
Confidence 01122222222 244455555433 2 22233321111 112222333333222211111223333333443
Q ss_pred eeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC---CCchhhhhHHHhhhHHHHHhHHhH
Q 012845 348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKPIAEFNTALS 424 (455)
Q Consensus 348 ~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~---~~~~al~~Y~~~r~~~~~~~~~~s 424 (455)
....+.+. .++++|||||||.++|++|+|+++||.+|..+++++.+.+... .....|+.|++.++.........+
T Consensus 300 ~~~~~~~~--~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~ 377 (450)
T PLN00093 300 EHPRPRRV--RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVL 377 (450)
T ss_pred ccccccee--CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444 3899999999999999999999999999999999999887432 245789999999888777766666
Q ss_pred HHHHHHHh
Q 012845 425 VQNFRAAM 432 (455)
Q Consensus 425 ~~~~~~~~ 432 (455)
....+.+.
T Consensus 378 ~~l~~~~~ 385 (450)
T PLN00093 378 DILQKVFY 385 (450)
T ss_pred HHHHHHHc
Confidence 55544443
No 46
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.98 E-value=1.2e-29 Score=253.32 Aligned_cols=323 Identities=15% Similarity=0.184 Sum_probs=196.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
|||+||||||||+++|+.|++.|++|+|+||.. +..+.|+..+++. .++.+ ++++++.... +....+. .
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~~---~l~~l-~i~~~~~~~~-----~~~~~~~-~ 69 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPPC---LIEEF-DIPDSLIDRR-----VTQMRMI-S 69 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCHh---hhhhc-CCchHHHhhh-----cceeEEE-c
Confidence 699999999999999999999999999999982 3446688888874 45666 7776654421 1222221 1
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~ 203 (455)
..+..+.. .. +. .......++|..|++.|.+.+.+.|+ +++.+ +|+++..+
T Consensus 70 ~~~~~~~~-~~--~~------~~~~~~~~~r~~fd~~L~~~a~~~G~-------------------~v~~~-~v~~v~~~ 120 (388)
T TIGR02023 70 PSRVPIKV-TI--PS------EDGYVGMVRREVFDSYLRERAQKAGA-------------------ELIHG-LFLKLERD 120 (388)
T ss_pred CCCceeee-cc--CC------CCCceEeeeHHHHHHHHHHHHHhCCC-------------------EEEee-EEEEEEEc
Confidence 12211110 00 00 01112358999999999999999887 77655 69999887
Q ss_pred CCceEEEEEeccC-CcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEE
Q 012845 204 DQCINVIASFLKE-GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (455)
Q Consensus 204 ~~~~~v~~~~~~~-g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (455)
++.+.+++...+. ..+...++++|+||+|||.+|.+|+.++.+.... ....+...+..... .. ...+....+++
T Consensus 121 ~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~--~~-~~~~~~~~~~~ 195 (388)
T TIGR02023 121 RDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDD--KM-AYYEELADVYY 195 (388)
T ss_pred CCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCch--hc-ccCCCeEEEEE
Confidence 7777776651100 0112247899999999999999999997653211 11111111111100 00 01122222222
Q ss_pred ----ccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845 283 ----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358 (455)
Q Consensus 283 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (455)
.++++.|+. |..+ ...+.+... ....+.+.+.+.+.+.++.... +.......+++....+.+. .
T Consensus 196 ~~~~~p~~y~wv~--P~~~-~~~vg~~~~-----~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~ip~~~~~~~~--~ 263 (388)
T TIGR02023 196 GGEVSPDFYGWVF--PKGD-HIAVGTGTG-----THGFDAKQLQANLRRRAGLDGG--QTIRREAAPIPMKPRPRWD--F 263 (388)
T ss_pred CCCcCCCceEEEe--eCCC-eeEEeEEEC-----CCCCCHHHHHHHHHHhhCCCCc--eEeeeeeEecccccccccc--C
Confidence 334444443 3332 222222111 1122344455555554432111 1222112222223334444 3
Q ss_pred CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhH
Q 012845 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424 (455)
Q Consensus 359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s 424 (455)
+++++||||||.++|++|+|+++||.+|..++++|.++++.. ..+.|+.|++.++.........+
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~-~~~~L~~Y~~~~~~~~~~~~~~~ 328 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG-DATDLRHYERKFMKLYGTTFRVL 328 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999987543 46789999999998887777554
No 47
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=8.9e-29 Score=247.18 Aligned_cols=333 Identities=14% Similarity=0.116 Sum_probs=192.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
+||+||||||||+++|+.|++.|++|+|+||.... .+.|+..++. ..++++ |+++.+.... . ...... .
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~-~~~cg~~i~~---~~l~~~-g~~~~~~~~~--i---~~~~~~-~ 69 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN-AKPCGGAIPL---CMVDEF-ALPRDIIDRR--V---TKMKMI-S 69 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC-CCCccccccH---hhHhhc-cCchhHHHhh--h---ceeEEe-c
Confidence 58999999999999999999999999999998643 4668888875 456677 7765544311 1 111111 1
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee-
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA- 202 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~- 202 (455)
..+..+. +.. .. ........++|..|++.|.+.+.+.|+ +++.++ ++++..
T Consensus 70 p~~~~~~-~~~--~~-----~~~~~~~~v~R~~~d~~L~~~a~~~G~-------------------~v~~~~-~~~i~~~ 121 (398)
T TIGR02028 70 PSNIAVD-IGR--TL-----KEHEYIGMLRREVLDSFLRRRAADAGA-------------------TLINGL-VTKLSLP 121 (398)
T ss_pred CCceEEE-ecc--CC-----CCCCceeeeeHHHHHHHHHHHHHHCCc-------------------EEEcce-EEEEEec
Confidence 1111110 000 00 001112468999999999999999887 787774 777643
Q ss_pred --cCCceEEEEEeccCC--cceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceE
Q 012845 203 --TDQCINVIASFLKEG--KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (455)
Q Consensus 203 --~~~~~~v~~~~~~~g--~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (455)
.++.+.+++...+.+ .+...++++|+||+|||.+|.+|+.++.... ... ..+.......... . ...+...
T Consensus 122 ~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~--~~~-~~~~~~~~~~~~~--~-~~~~~~~ 195 (398)
T TIGR02028 122 ADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDY--SYA-IAFQERIRLPDEK--M-AYYDDLA 195 (398)
T ss_pred cCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCc--ceE-EEEEEEeeCChhh--c-ccCCCeE
Confidence 233444544311100 1222478999999999999999999975421 111 1111111111000 0 0112222
Q ss_pred EEEE----ccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeeccc
Q 012845 279 FFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKF 354 (455)
Q Consensus 279 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (455)
.+.+ .|+++.|..+. .+ ...+.+..... ....+.+.+.+...........+.......+++....+.+
T Consensus 196 ~~~~g~~~~p~gY~WifP~--~~-~~~VG~g~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ip~~~~~~~ 267 (398)
T TIGR02028 196 EMYVGDDVSPDFYGWVFPK--CD-HVAVGTGTVAA-----KPEIKRLQSGIRARAAGKVAGGRIIRVEAHPIPEHPRPRR 267 (398)
T ss_pred EEEeCCCCCCCceEEEEEC--CC-eEEEEEEeCCC-----CccHHHHHHhhhhhhhhccCCCcEEEEEEEeccccccccE
Confidence 2222 24445555443 32 23333321111 1112233333333211111111222222333333333444
Q ss_pred ccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC---CCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKPIAEFNTALSVQNFRAA 431 (455)
Q Consensus 355 ~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~---~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~ 431 (455)
.. ++++|||||||.++|++|+||++||.+|..+++++.++++.. ....+|+.|++.++.........+....+.+
T Consensus 268 ~~--~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~ 345 (398)
T TIGR02028 268 VV--GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVF 345 (398)
T ss_pred EC--CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 899999999999999999999999999999999999887543 2457899999988887766666555444433
No 48
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=4.6e-30 Score=275.06 Aligned_cols=331 Identities=19% Similarity=0.219 Sum_probs=203.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhc--hHHHHHhcCCCcccccceE
Q 012845 44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDG--LAEEIERSQPPVDLWRKFI 119 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~g--l~~~l~~~~~~~~~~~~~~ 119 (455)
.+|+|||||||||++|+.|++. |++|+||||++.....+.++.+++++++.|..+ + +.+.+.... ..|....
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~-~~~~~~~~~~~~---~~~~~~~ 76 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAA-DPVSAAAIGDAF---NHWDDID 76 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhc-CHHHHHHHHHhc---ccCCceE
Confidence 3799999999999999999998 899999999988777788999999999988877 4 333333322 1222222
Q ss_pred EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (455)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 199 (455)
+.. .+..... .......+.|..|.+.|++.+.+.|+ +++++++|++
T Consensus 77 ~~~--~g~~~~~-------------~g~~~~~i~R~~L~~~L~e~a~~~GV-------------------~i~~g~~v~~ 122 (765)
T PRK08255 77 VHF--KGRRIRS-------------GGHGFAGIGRKRLLNILQARCEELGV-------------------KLVFETEVPD 122 (765)
T ss_pred EEE--CCEEEEE-------------CCeeEecCCHHHHHHHHHHHHHHcCC-------------------EEEeCCccCc
Confidence 221 1221110 01123458899999999999999887 8999998876
Q ss_pred eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCccc--ceeEEEEEecCCcccccccCCCce
Q 012845 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDL--QKLVSVHFLSKDLGDYLLNERPGM 277 (455)
Q Consensus 200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 277 (455)
++.. ..++|+||+|||.+|.+|+++...+...... ..+... ...... ....
T Consensus 123 i~~~-------------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~--g~~~~~------~~~~ 175 (765)
T PRK08255 123 DQAL-------------------AADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWL--GTHKVF------DAFT 175 (765)
T ss_pred hhhh-------------------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEe--cCCCcc------ccee
Confidence 5310 1368999999999999999874222211111 111111 000000 0000
Q ss_pred EEEEEccCceEEEEeecCCCCeEEEEeecCCCC---CCCCCCCHHHHHHHHHHhhCCCCCCeeEEE------eeceEece
Q 012845 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ---QNLEDFSPEICEKLIFKLVGWELSDIDVID------IKPWVMHA 348 (455)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~ 348 (455)
........+..+...++...+...+.+...... .....++.+...+.+.+.+........++. ...|....
T Consensus 176 ~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~~~ 255 (765)
T PRK08255 176 FAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWINFP 255 (765)
T ss_pred EEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeeecc
Confidence 000111111111112333333222222221110 112334454444444443322211111111 11243322
Q ss_pred -eeecccccCCCc----EEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHh
Q 012845 349 -EVAEKFLCCYNQ----IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL 423 (455)
Q Consensus 349 -~~~~~~~~~~~~----vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~ 423 (455)
...+.|. .+| ++|+|||||.|+|+.|||+|+||+||..|+++|.+. ..+...+|+.|++.|+++++.+++.
T Consensus 256 ~~~~~~w~--~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~--~~~~~~al~~ye~~R~~r~~~~~~~ 331 (765)
T PRK08255 256 RVVCERWV--HWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEH--PGDLPAALAAYEEERRVEVLRIQNA 331 (765)
T ss_pred eeccCCCc--cCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555 377 999999999999999999999999999999999864 2256789999999999999999999
Q ss_pred HHHHHHHHhccccccCCCcc
Q 012845 424 SVQNFRAAMEVPSALGLDPT 443 (455)
Q Consensus 424 s~~~~~~~~~~~~~~~~~~~ 443 (455)
|+....++....+..+.+|.
T Consensus 332 s~~~~~~~~~~~~~~~~~~~ 351 (765)
T PRK08255 332 ARNSTEWFENVERYAGLEPE 351 (765)
T ss_pred HHHhCceeeecchhhCCCHH
Confidence 99887777766666665543
No 49
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=3.7e-29 Score=240.58 Aligned_cols=291 Identities=18% Similarity=0.204 Sum_probs=180.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
+||+||||||+|+++|+.|++.|++|+|+||.+.+....++..+.+++++.+... +.. .+. .+....+ ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~-------~~~~~~~-~~ 70 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLP-LEL-IVN-------LVRGARF-FS 70 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCC-chh-hhh-------heeeEEE-Ec
Confidence 6999999999999999999999999999999988777778888998888777554 321 110 0111111 11
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~ 203 (455)
..+.... .. ........++|..+.+.|.+.+.+.|+ +++++++|+++..+
T Consensus 71 ~~~~~~~-~~----------~~~~~~~~i~r~~l~~~l~~~~~~~gv-------------------~~~~~~~v~~~~~~ 120 (295)
T TIGR02032 71 PNGDSVE-IP----------IETELAYVIDRDAFDEQLAERAQEAGA-------------------ELRLGTTVLDVEIH 120 (295)
T ss_pred CCCcEEE-ec----------cCCCcEEEEEHHHHHHHHHHHHHHcCC-------------------EEEeCcEEeeEEEe
Confidence 2222111 00 002234668999999999999999886 99999999999888
Q ss_pred CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEEc
Q 012845 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (455)
Q Consensus 204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (455)
++.+.+.+. ++. .++++|+||+|||.+|.++++++......... ..+...+..... ...+........
T Consensus 121 ~~~~~~~~~---~~~---~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~ 188 (295)
T TIGR02032 121 DDRVVVIVR---GGE---GTVTAKIVIGADGSRSIVAKKLGLRKEPRELG-VAARAEVEMPDE-----EVDEDFVEVYID 188 (295)
T ss_pred CCEEEEEEc---Ccc---EEEEeCEEEECCCcchHHHHhcCCCCCCccee-eEEEEEEecCCc-----ccCcceEEEEcC
Confidence 777666554 322 27899999999999999999887544221111 111112211110 111222222222
Q ss_pred c--CceEEEEeecCCCCeEEEEeecCCCCCCCCCCC-HHHHHHHHHHhhCCCCCCeeEEEeeceEecee-eecccccCCC
Q 012845 284 T--EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVIDIKPWVMHAE-VAEKFLCCYN 359 (455)
Q Consensus 284 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 359 (455)
. ....+.+.+|...+.+.+.+....+. ...+ .+.+.+++..... ....+......+++... ....+. .+
T Consensus 189 ~~~~~~~~~~~~P~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~--~~ 261 (295)
T TIGR02032 189 RGISPGGYGWVFPKGDGTANVGVGSRSAE---EGEDLKKYLKDFLARRPE--LKDAETVEVIGAPIPIGRPDDKTV--RG 261 (295)
T ss_pred CCcCCCceEEEEeCCCCeEEEeeeeccCC---CCCCHHHHHHHHHHhCcc--cccCcEEeeeceeeccCCCCCccc--cC
Confidence 1 11123444555556555544333222 1122 2334444433321 12222333333333332 233443 49
Q ss_pred cEEEEcCccccCCCCcCccchhhHHHHHHHHHHH
Q 012845 360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393 (455)
Q Consensus 360 ~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L 393 (455)
||+++|||||+++|++|||+|+||+||..++++|
T Consensus 262 ~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 262 NVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999875
No 50
>PRK11445 putative oxidoreductase; Provisional
Probab=99.97 E-value=8.9e-29 Score=243.57 Aligned_cols=312 Identities=20% Similarity=0.265 Sum_probs=179.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~----~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~ 119 (455)
+||+||||||||+++|+.|++. ++|+|+||.+.+. .+.+|..|++++++.|+++ |++........+. .+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~l-gl~~~~~~~~~~~----~~~ 75 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKD-GLTLPKDVIANPQ----IFA 75 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHc-CCCCCcceeeccc----cce
Confidence 7999999999999999999999 9999999998543 3458899999999999999 8752111100000 000
Q ss_pred EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (455)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 199 (455)
....+... ...... ......++|..|++.|.+.+ +.|+ ++++++.|++
T Consensus 76 ---------~~~~~~~~--~~~~~~-~~~~~~i~R~~~~~~L~~~~-~~gv-------------------~v~~~~~v~~ 123 (351)
T PRK11445 76 ---------VKTIDLAN--SLTRNY-QRSYINIDRHKFDLWLKSLI-PASV-------------------EVYHNSLCRK 123 (351)
T ss_pred ---------eeEecccc--cchhhc-CCCcccccHHHHHHHHHHHH-hcCC-------------------EEEcCCEEEE
Confidence 00000000 000000 11235689999999998854 5555 8999999999
Q ss_pred eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEE
Q 012845 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (455)
Q Consensus 200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (455)
++.+++++.+++. ++|+ ..++++|+||+|||.+|.+|++++..... ..+..+ ...+..... .+.. .
T Consensus 124 i~~~~~~~~v~~~--~~g~--~~~i~a~~vV~AdG~~S~vr~~l~~~~~~-~~~~~~-~~~~~~~~~-------~~~~-~ 189 (351)
T PRK11445 124 IWREDDGYHVIFR--ADGW--EQHITARYLVGADGANSMVRRHLYPDHQI-RKYVAI-QQWFAEKHP-------VPFY-S 189 (351)
T ss_pred EEEcCCEEEEEEe--cCCc--EEEEEeCEEEECCCCCcHHhHHhcCCCch-hhEEEE-EEEecCCCC-------CCCc-c
Confidence 9988888777653 2443 23689999999999999999998643221 111111 111111110 0100 0
Q ss_pred EEEccC-ceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHH---HHHHHHhhCCCCCCeeEEEeeceEeceeeecccc
Q 012845 280 FIFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC---EKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFL 355 (455)
Q Consensus 280 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (455)
.++.+. ..++.+..|... .+.....+ + ..+ ..+.+ .+.+.+ ++...+.. +.....+++.......+.
T Consensus 190 ~~f~~~~~~~~~W~~p~~~-~~~~g~~~--~---~~~-~~~~~~~l~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 260 (351)
T PRK11445 190 CIFDNEITDCYSWSISKDG-YFIFGGAY--P---MKD-GRERFETLKEKLSA-FGFQFGKP-VKTEACTVLRPSRWQDFV 260 (351)
T ss_pred eEEeccCCCceEEEeCCCC-cEEecccc--c---ccc-hHHHHHHHHHHHHh-cccccccc-cccccccccCcccccccc
Confidence 111111 111222223222 11111000 0 011 11112 222222 22211111 111111111111112222
Q ss_pred cCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhH
Q 012845 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNT 421 (455)
Q Consensus 356 ~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~ 421 (455)
...+|++|||||||.++|++|+|+++|+.|+..|++.|.+.. ...++.|++.++....++.
T Consensus 261 ~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~-----~~~~~~y~~~~~~~~~~~~ 321 (351)
T PRK11445 261 CGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP-----EKLNTAYWRKTRKLRLKLF 321 (351)
T ss_pred cCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHH
Confidence 224899999999999999999999999999999999997642 5568999998877664443
No 51
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.97 E-value=2.9e-28 Score=243.62 Aligned_cols=331 Identities=19% Similarity=0.196 Sum_probs=204.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcc-cccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA-HFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~-~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
+.+||+||||||||++||+.|++.|++|+||||...+..+.++ ..+.+..++.+... .. .++... + .....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~-~~-~~i~~~---v--~~~~~~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPD-FD-EEIERK---V--TGARIY 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCC-cc-hhhhee---e--eeeEEE
Confidence 5799999999999999999999999999999999999877766 77777666554322 11 112111 1 011111
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
.. +...... ......+.++|..++++|.+.+++.|+ .++.++++..+
T Consensus 75 -~~--~~~~~~~-----------~~~~~~y~v~R~~fd~~La~~A~~aGa-------------------e~~~~~~~~~~ 121 (396)
T COG0644 75 -FP--GEKVAIE-----------VPVGEGYIVDRAKFDKWLAERAEEAGA-------------------ELYPGTRVTGV 121 (396)
T ss_pred -ec--CCceEEe-----------cCCCceEEEEhHHhhHHHHHHHHHcCC-------------------EEEeceEEEEE
Confidence 01 1111000 001235778999999999999999998 99999999999
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (455)
..+++++.+.+. .+. .++.+|+||+|||.+|.++++++.. .................. .........+.
T Consensus 122 ~~~~~~~~~~~~---~~~---~e~~a~~vI~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~ 190 (396)
T COG0644 122 IREDDGVVVGVR---AGD---DEVRAKVVIDADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVP----DDGDVEEFLYG 190 (396)
T ss_pred EEeCCcEEEEEE---cCC---EEEEcCEEEECCCcchHHHHHhCCC-CCChhheeEEeEEEEecC----CCCceEEEEec
Confidence 998888776665 332 3889999999999999999999876 111111111111111111 00111111112
Q ss_pred EEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCC-----eeEEEee--ceEeceeeecc
Q 012845 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-----IDVIDIK--PWVMHAEVAEK 353 (455)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~ 353 (455)
.+.....+..+.+|...+...+.+............ . +.++++....... .+..... ..|.......+
T Consensus 191 ~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~~~----~-~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~ 265 (396)
T COG0644 191 PLDVGPGGYGWIFPLGDGHANVGIGVLLDDPSLSPF----L-ELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP 265 (396)
T ss_pred CCccCCCceEEEEECCCceEEEEEEEecCCcCCCch----H-HHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCc
Confidence 112222334444555555555554432222111111 1 3334333221111 1222222 22222222222
Q ss_pred cccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432 (455)
Q Consensus 354 ~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 432 (455)
.. .+++++|||||++++|++|+|+..||.+|..+++.|.++.... .+.|..|++.+++....-..........+.
T Consensus 266 ~~--~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~--~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~ 340 (396)
T COG0644 266 LV--GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG--EEALAEYERLLRKSLAREDLKSLRLLKLLL 340 (396)
T ss_pred cc--cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 33 3899999999999999999999999999999999999986544 678888999988777666665555444333
No 52
>PRK10015 oxidoreductase; Provisional
Probab=99.96 E-value=8.2e-27 Score=234.81 Aligned_cols=331 Identities=14% Similarity=0.171 Sum_probs=181.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-cccccChhHHHHHHhhhchHHHHHhcCCCccc--c-c
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVDL--W-R 116 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~-~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~--~-~ 116 (455)
+.++||+||||||||+++|+.|+++|++|+|+||.+.+..+. ++..+....++.+ +|++... .+... . .
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l--~~~~~~~-----~~i~~~~~~~ 75 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAI--IPGFAAS-----APVERKVTRE 75 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHH--ccccccc-----CCccccccce
Confidence 356999999999999999999999999999999998876543 4555544333322 1233210 11100 0 1
Q ss_pred ceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccE
Q 012845 117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE 196 (455)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~ 196 (455)
.+.+. ...+.....+... ... ..+...+.+.|..|+++|.+.+.+.|+ +++.+++
T Consensus 76 ~~~~~-~~~~~~~~~~~~~-~~~----~~~~~~~~v~R~~fd~~L~~~a~~~Gv-------------------~i~~~~~ 130 (429)
T PRK10015 76 KISFL-TEESAVTLDFHRE-QPD----VPQHASYTVLRNRLDPWLMEQAEQAGA-------------------QFIPGVR 130 (429)
T ss_pred eEEEE-eCCCceEeecccC-CCC----CCCcCceEeehhHHHHHHHHHHHHcCC-------------------EEECCcE
Confidence 11111 1111111111000 000 011235678899999999999999887 9999999
Q ss_pred EEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccc----cccc
Q 012845 197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD----YLLN 272 (455)
Q Consensus 197 v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 272 (455)
|+++..+++.+..... ++. ++.+|+||+|||.+|.+++.++........ .....+......... ....
T Consensus 131 V~~i~~~~~~v~~v~~---~~~----~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~-~~~~gvk~~~~~~~~~i~~~~~~ 202 (429)
T PRK10015 131 VDALVREGNKVTGVQA---GDD----ILEANVVILADGVNSMLGRSLGMVPASDPH-HYAVGVKEVIGLTPEQINDRFNI 202 (429)
T ss_pred EEEEEEeCCEEEEEEe---CCe----EEECCEEEEccCcchhhhcccCCCcCCCcC-eEEEEEEEEEeCCHHHhhHhhcC
Confidence 9999876666543333 332 789999999999999999998753322111 111111111111100 0100
Q ss_pred -CCCceEEEEEc-c-Cc---eEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh--CCCCCCeeEEEeece
Q 012845 273 -ERPGMLFFIFN-T-EA---IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV--GWELSDIDVIDIKPW 344 (455)
Q Consensus 273 -~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~ 344 (455)
...+.++.+++ + .+ .+|++.. .+...+.+............+...+.+.+.+.. .......+.......
T Consensus 203 ~~~~g~~w~~~g~~~~g~~g~G~~~~~---~d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~ 279 (429)
T PRK10015 203 TGEEGAAWLFAGSPSDGLMGGGFLYTN---KDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAH 279 (429)
T ss_pred CCCCCeEEEecCccCCCCCCceEEEEc---CCcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeE
Confidence 11222222221 1 11 2233221 233333321110000001112222222222211 000111122222222
Q ss_pred Eecee---eecccccCCCcEEEEcCccccCCC--CcCccchhhHHHHHHHHHHHHHhHcC-CCCchhhhhHHHhhhHH
Q 012845 345 VMHAE---VAEKFLCCYNQIILAGDACHRFPP--AGGFGMNTGVQDAHNLAWKIASVLKD-IAPASILNTYETERKPI 416 (455)
Q Consensus 345 ~~~~~---~~~~~~~~~~~vvliGDAAh~~~P--~~G~G~~~Al~da~~La~~L~~~~~~-~~~~~al~~Y~~~r~~~ 416 (455)
.++.. ..+... .+++++|||||++++| ++|+||++||.++..+|+++.+++.. +.+...|+.|++..+..
T Consensus 280 ~ip~gg~~~~~~~~--~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 280 MVPEGGLAMVPQLV--NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQS 355 (429)
T ss_pred EcccCCcccCCccc--cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHC
Confidence 22211 122333 4899999999999995 69999999999999999999988763 44678899999988866
No 53
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.95 E-value=3.3e-26 Score=230.67 Aligned_cols=339 Identities=16% Similarity=0.183 Sum_probs=184.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-cccccChhHHHHHHhhhchHHHHHhcCCCcc---ccc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVD---LWR 116 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~-~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~---~~~ 116 (455)
..++||+||||||||+++|+.|+++|++|+|+||.+.+..+. ++..+....++.+ +|.+. .. .+.. ...
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l--~~~~~----~~-~~~~~~~~~~ 75 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHI--IPGFA----DS-APVERLITHE 75 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHH--hhhhh----hc-Ccccceeeee
Confidence 356999999999999999999999999999999998876544 3444544333221 11221 11 1111 011
Q ss_pred ceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccE
Q 012845 117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE 196 (455)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~ 196 (455)
...+. ...+.... +....... ......+.+.|..|+++|.+.+++.|+ +++.+++
T Consensus 76 ~~~~~-~~~~~~~~--~~~~~~~~---~~~~~~~~v~R~~fD~~L~~~a~~~Gv-------------------~i~~~~~ 130 (428)
T PRK10157 76 KLAFM-TEKSAMTM--DYCNGDET---SPSQRSYSVLRSKFDAWLMEQAEEAGA-------------------QLITGIR 130 (428)
T ss_pred eEEEE-cCCCceee--cccccccc---CCCCCceeeEHHHHHHHHHHHHHHCCC-------------------EEECCCE
Confidence 11111 11121111 11000000 112234567899999999999999887 9999999
Q ss_pred EEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccc-----ccc
Q 012845 197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD-----YLL 271 (455)
Q Consensus 197 v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 271 (455)
|+++..+++.+.+... ++. ++.+|+||+|||.+|.++++++...... .....+.+......... ...
T Consensus 131 V~~i~~~~g~v~~v~~---~g~----~i~A~~VI~A~G~~s~l~~~lgl~~~~~-~~~~av~~~~~~~~~~~~~~~~~~~ 202 (428)
T PRK10157 131 VDNLVQRDGKVVGVEA---DGD----VIEAKTVILADGVNSILAEKLGMAKRVK-PTDVAVGVKELIELPKSVIEDRFQL 202 (428)
T ss_pred EEEEEEeCCEEEEEEc---CCc----EEECCEEEEEeCCCHHHHHHcCCCCCCC-CcEEEEEEEEEEEcCHHHHHHhhcc
Confidence 9999877666543333 443 7899999999999999999987653221 12222222111111100 000
Q ss_pred cCCCceE-EEEEccCc----eEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCC--CCCeeEEEeece
Q 012845 272 NERPGML-FFIFNTEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVIDIKPW 344 (455)
Q Consensus 272 ~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~ 344 (455)
...++.. ++...+.. .+|++. ......+.+............+...+.+.+.+..... ............
T Consensus 203 ~~~~g~~~~~~g~~~~g~~ggG~~~~---~~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~ 279 (428)
T PRK10157 203 QGNQGAACLFAGSPTDGLMGGGFLYT---NENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAH 279 (428)
T ss_pred CCCCCeEEEEEECCCCCCcCceeEEE---cCCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhh
Confidence 1112222 22211111 223332 1233333322111110011122222223232211000 000011111111
Q ss_pred Eece---eeecccccCCCcEEEEcCccccCCC--CcCccchhhHHHHHHHHHHHHHhHcCC-CCchhhhhHHHhhhHHHH
Q 012845 345 VMHA---EVAEKFLCCYNQIILAGDACHRFPP--AGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAE 418 (455)
Q Consensus 345 ~~~~---~~~~~~~~~~~~vvliGDAAh~~~P--~~G~G~~~Al~da~~La~~L~~~~~~~-~~~~al~~Y~~~r~~~~~ 418 (455)
.++. ...+... .++|++|||||++++| ++|+|+++|+.++..+|+++.++++.. .+...|..|++..+..+-
T Consensus 280 ~ip~~g~~~~~~~~--~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~~~ 357 (428)
T PRK10157 280 VVPEAGINMLPELV--GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPL 357 (428)
T ss_pred HhhcCCcccCCcee--cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhHH
Confidence 1111 1112222 3899999999999998 599999999999999999999887543 356789999998877753
Q ss_pred HhHHhH
Q 012845 419 FNTALS 424 (455)
Q Consensus 419 ~~~~~s 424 (455)
+-+...
T Consensus 358 ~~l~~~ 363 (428)
T PRK10157 358 RDMRMY 363 (428)
T ss_pred HHHHHH
Confidence 444444
No 54
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.95 E-value=4.9e-26 Score=213.98 Aligned_cols=348 Identities=19% Similarity=0.210 Sum_probs=226.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCCC---------CCcccccChhHHHHHHhhhchHHHHHh
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFST---------HPQAHFINNRYALVFRKLDGLAEEIER 107 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~~~---------~~~~~~l~~~~~~~l~~~~gl~~~l~~ 107 (455)
...+||+||||||+|+++|..|... .++|.|+|....+.- ..+-..+++.....++.+ |.|+.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~-~awd~i~~ 112 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSI-GAWDHIFH 112 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhc-CHHHHhhh
Confidence 3489999999999999999999865 578999998844321 234567889999999999 99998855
Q ss_pred -cCCCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHH-HHHhcccccccCCCcccccccc
Q 012845 108 -SQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK-QLEKLNFKICTSEGTEGLHNHL 185 (455)
Q Consensus 108 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~-~~~~~g~~~~~~~~~~~~~~~~ 185 (455)
...+..... .++..-+....++..... .+ ....+....++-.|+. .+...
T Consensus 113 ~R~~~~~~~~----v~Ds~s~a~I~~~~d~~~------~d-~a~iien~nIq~sL~~s~~~s~----------------- 164 (481)
T KOG3855|consen 113 DRYQKFSRML----VWDSCSAALILFDHDNVG------ID-MAFIIENDNIQCSLYNSQLDSE----------------- 164 (481)
T ss_pred hcccccccee----eecccchhhhhhcccccc------cc-ceeeeehhHHHHHHHHHHHhhh-----------------
Confidence 333332211 111111111111110000 01 1344556667777774 22221
Q ss_pred cccceEEeccEEEEeeec------CC--ceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeE
Q 012845 186 LQGREILMGHECVSVSAT------DQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV 257 (455)
Q Consensus 186 ~~~~~i~~~~~v~~i~~~------~~--~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~ 257 (455)
.++++|....++..+... ++ ...++.. +|. .+.+|++|+|||.||.+|+..+++..++.|.+..+
T Consensus 165 ~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~---dg~----~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~hav 237 (481)
T KOG3855|consen 165 SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLT---DGI----NFATDLLIGADGFNSVVRKASNIDVASWNYDQHAV 237 (481)
T ss_pred cCceeeecccceeeeccccccCCCCCcceEEEEec---cCc----eeeeceeeccccccchhhhhcCCCcccccccceee
Confidence 234688888888887642 22 2335555 664 88999999999999999999999998888777765
Q ss_pred EEEEecCCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh--------
Q 012845 258 SVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV-------- 329 (455)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------- 329 (455)
.....-..- ...+...+..|.|.|...+++.+.....++|...- .....+..+++|.+.+++...+
T Consensus 238 VAtl~l~~~-----~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~-~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~ 311 (481)
T KOG3855|consen 238 VATLKLEEE-----AILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSP-ENASILKSLPEERFVDLLNSAFSSQNPRAA 311 (481)
T ss_pred eEEEEeccc-----ccccchhHHhcCCCCceeecccccccccceeecCH-HHHHHHhcCCchhHHHHHHHHHhccCCCch
Confidence 554432221 23566677788898888888888777777776431 1011111222222222211111
Q ss_pred -----------------------CC-----CCCC-eeEE--EeeceEeceeeecccccCCCcEEEEcCccccCCCCcCcc
Q 012845 330 -----------------------GW-----ELSD-IDVI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFG 378 (455)
Q Consensus 330 -----------------------~~-----~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G 378 (455)
+. -+.. .++. ....||+.....+.++. +|+.|+|||||.++|+.|||
T Consensus 312 ~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~--~~~Al~GDAAHr~hPlAgqG 389 (481)
T KOG3855|consen 312 YSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVT--DRVALIGDAAHRVHPLAGQG 389 (481)
T ss_pred hhhchhhhhcchhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcC--CchhhhcchhhccccCcccc
Confidence 00 0000 0111 12246777778888875 99999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhHc---CCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845 379 MNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432 (455)
Q Consensus 379 ~~~Al~da~~La~~L~~~~~---~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 432 (455)
.|+++.|+..|.+.|.+++. +-++..-|+.|++.|.+....+.-......+..+
T Consensus 390 vNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N~~ll~~vdkl~klY~ 446 (481)
T KOG3855|consen 390 VNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHNYVLLGAVDKLHKLYA 446 (481)
T ss_pred cCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhhcchHHHHHHHHHHHHh
Confidence 99999999999999999874 3356788999999998887776666655555444
No 55
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.94 E-value=3.9e-24 Score=213.93 Aligned_cols=307 Identities=17% Similarity=0.228 Sum_probs=176.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeecC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSV 124 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~~ 124 (455)
||+||||||||+++|+.|++.|++|+|+|+.+... ....+.+.... ++++ ++.+.+. ..|.........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~-~~~~~~~~~~~---~~~~-~~~~~~~------~~~~~~~~~~~~ 69 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP-GNHTYGVWDDD---LSDL-GLADCVE------HVWPDVYEYRFP 69 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-CCccccccHhh---hhhh-chhhHHh------hcCCCceEEecC
Confidence 89999999999999999999999999999986542 22233333322 3333 4332221 122221111100
Q ss_pred CCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec-
Q 012845 125 TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT- 203 (455)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~- 203 (455)
..... .+..+..+++..|.+.|.+.+.+.|+ +++ ..+|+.+..+
T Consensus 70 ~~~~~---------------~~~~~~~i~~~~l~~~l~~~~~~~gv-------------------~~~-~~~v~~i~~~~ 114 (388)
T TIGR01790 70 KQPRK---------------LGTAYGSVDSTRLHEELLQKCPEGGV-------------------LWL-ERKAIHAEADG 114 (388)
T ss_pred Ccchh---------------cCCceeEEcHHHHHHHHHHHHHhcCc-------------------EEE-ccEEEEEEecC
Confidence 00000 01224568999999999999988875 664 6688888776
Q ss_pred CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEEc
Q 012845 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (455)
Q Consensus 204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (455)
++.+.+++. +|. ++++|+||+|||.+|.+++....... .++......+....... . .....++.+.
T Consensus 115 ~~~~~v~~~---~g~----~~~a~~VI~A~G~~s~~~~~~~~~~~---~~q~~~G~~~~~~~~~~---~-~~~~~~~d~~ 180 (388)
T TIGR01790 115 VALSTVYCA---GGQ----RIQARLVIDARGFGPLVQYVRFPLNV---GFQVAYGVEARLSRPPH---G-PSSMVIMDAR 180 (388)
T ss_pred CceeEEEeC---CCC----EEEeCEEEECCCCchhcccccCCCCc---eEEEEEEEEEEEcCCCC---C-CCceEEEecc
Confidence 455556554 554 78999999999999966543311111 12222222222211110 0 1111222221
Q ss_pred cC--------ceE--EEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh---CCCCCCeeEEEeeceEeceee
Q 012845 284 TE--------AIG--VLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHAEV 350 (455)
Q Consensus 284 ~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~ 350 (455)
.. +.. +.+.+|...+...+...... .....+.+.+.+.+.+++ ++....+.......+|+....
T Consensus 181 ~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~~~~~iP~~~~~ 257 (388)
T TIGR01790 181 VDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLA---DRPALPRDRLRQRILARLNAQGWQIKTIEEEEWGALPVGLPG 257 (388)
T ss_pred ccccccccccCCCCceEEEeecCCCeEEEEecccc---CCCCCCHHHHHHHHHHHHHHcCCeeeEEEeeeeEEEecccCC
Confidence 11 111 33344544444433211111 112344555666665544 333222222222233443221
Q ss_pred ecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHH
Q 012845 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEF 419 (455)
Q Consensus 351 ~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~ 419 (455)
+.. .+|+++||||||.++|++|+|++.|+.+|..+++.|.++++.. ...+++.|++..+++..+
T Consensus 258 --~~~--~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 258 --PFL--PQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS-SELATAAWDGLWPTERRR 321 (388)
T ss_pred --Ccc--CCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHhchHHHHH
Confidence 222 4899999999999999999999999999999999999887433 468888998776666655
No 56
>PLN02697 lycopene epsilon cyclase
Probab=99.94 E-value=1.1e-23 Score=214.69 Aligned_cols=316 Identities=17% Similarity=0.259 Sum_probs=187.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
...+||+||||||||+++|+.|++.|++|+|+|+.... .+.++++. ..++.+ |+.+.+.. .|.....
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~---~~n~GvW~---~~l~~l-gl~~~i~~------~w~~~~v 172 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF---TNNYGVWE---DEFKDL-GLEDCIEH------VWRDTIV 172 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC---CCccccch---hHHHhc-CcHHHHHh------hcCCcEE
Confidence 44689999999999999999999999999999986332 22233432 345666 77655432 2222222
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
... .+.... ....+..++|..|.+.|++.+.+.|+ ++ .+++|+++
T Consensus 173 ~~~-~~~~~~--------------~~~~Yg~V~R~~L~~~Ll~~a~~~GV-------------------~~-~~~~V~~I 217 (529)
T PLN02697 173 YLD-DDKPIM--------------IGRAYGRVSRTLLHEELLRRCVESGV-------------------SY-LSSKVDRI 217 (529)
T ss_pred Eec-CCceee--------------ccCcccEEcHHHHHHHHHHHHHhcCC-------------------EE-EeeEEEEE
Confidence 221 111110 01123468999999999999988886 66 77899999
Q ss_pred eecCCceEEE-EEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCC-cccceeEEEEEecCCcccccccCCCceE
Q 012845 201 SATDQCINVI-ASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE-KDLQKLVSVHFLSKDLGDYLLNERPGML 278 (455)
Q Consensus 201 ~~~~~~~~v~-~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (455)
..+++.+.+. +. +|. ++.+|+||+|||.+|. +.++....+. ...+..+.........+.. . ....
T Consensus 218 ~~~~~~~~vv~~~---dG~----~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d--~--~~~v 284 (529)
T PLN02697 218 TEASDGLRLVACE---DGR----VIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYD--P--SLMV 284 (529)
T ss_pred EEcCCcEEEEEEc---CCc----EEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCC--c--chhe
Confidence 8876765543 33 453 7899999999999993 2332211111 2233333333332221110 1 1112
Q ss_pred EEEEcc-----------CceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh---CCCCCCeeEEEeece
Q 012845 279 FFIFNT-----------EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPW 344 (455)
Q Consensus 279 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~ 344 (455)
++.+.. +...+++.+|...++..+.-.... .....+.+.+.+.+.+++ ++....+........
T Consensus 285 lMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~---~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~i 361 (529)
T PLN02697 285 FMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLA---SKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYI 361 (529)
T ss_pred eeccccccccccccccCCCceEEEEeecCCCeEEEEEeeec---cCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeee
Confidence 222111 122333444444444433211100 011223455555555544 333233333333445
Q ss_pred EeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC----------CCchhhhhHHHhhh
Q 012845 345 VMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI----------APASILNTYETERK 414 (455)
Q Consensus 345 ~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~----------~~~~al~~Y~~~r~ 414 (455)
|+...... . .+++++|||||+.++|.+|.|+..++.+|..+|++|+++++.. ....+++.|++++.
T Consensus 362 Pm~g~~~~-~---~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~ 437 (529)
T PLN02697 362 PVGGSLPN-T---EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWP 437 (529)
T ss_pred cCCCCCcc-c---CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhCh
Confidence 55432222 2 3899999999999999999999999999999999999998643 23577899999888
Q ss_pred HHHHHhHHhH
Q 012845 415 PIAEFNTALS 424 (455)
Q Consensus 415 ~~~~~~~~~s 424 (455)
.+..+...+.
T Consensus 438 ~e~~r~~~~~ 447 (529)
T PLN02697 438 QERKRQRAFF 447 (529)
T ss_pred HHHHHHHHHH
Confidence 8765544443
No 57
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.94 E-value=9e-25 Score=203.37 Aligned_cols=349 Identities=19% Similarity=0.187 Sum_probs=221.7
Q ss_pred CCCcccccCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCC-
Q 012845 32 SDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP- 110 (455)
Q Consensus 32 ~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~- 110 (455)
++.....+.....||+|||||++|.++|+.|+|.|.+|+|+||+-....+.-|..++|.+...|.++ |+.|.++....
T Consensus 34 ~~~~~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~L-Gl~Dcve~IDAQ 112 (509)
T KOG1298|consen 34 AETSVEARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKL-GLEDCVEGIDAQ 112 (509)
T ss_pred chhhhhhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHh-CHHHHhhcccce
Confidence 3333344446679999999999999999999999999999999988778888999999999999999 99999988533
Q ss_pred CcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccce
Q 012845 111 PVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE 190 (455)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (455)
+...+ .++. +|....-... ..++ .....+..+....+.+-|++.+..+.. ++
T Consensus 113 ~v~Gy---~ifk--~gk~v~~pyP--~~~f---~~d~~GrsFhnGRFvq~lR~ka~slpN------------------V~ 164 (509)
T KOG1298|consen 113 RVTGY---AIFK--DGKEVDLPYP--LKNF---PSDPSGRSFHNGRFVQRLRKKAASLPN------------------VR 164 (509)
T ss_pred Eeeee---EEEe--CCceeeccCC--CcCC---CCCcccceeeccHHHHHHHHHHhcCCC------------------eE
Confidence 23222 1221 3332221111 1111 123335567777899999998877653 45
Q ss_pred EEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccc
Q 012845 191 ILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDY 269 (455)
Q Consensus 191 i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
+..+ .|.++-.+++.++ |+.. +..+.+.+..|.+-|.|||..|.+|+.+-.+.... -...++.....-.
T Consensus 165 ~eeG-tV~sLlee~gvvkGV~yk---~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~-V~S~fVG~vl~N~----- 234 (509)
T KOG1298|consen 165 LEEG-TVKSLLEEEGVVKGVTYK---NKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEE-VPSYFVGLVLKNC----- 234 (509)
T ss_pred Eeee-eHHHHHhccCeEEeEEEe---cCCCceEEEecceEEEecchhHHHHHHhcCCcccc-cchheeeeeecCC-----
Confidence 5444 4555555555444 4554 33344467889999999999999999994322110 1111111111111
Q ss_pred cccCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCH----------------HHHHHHHHHhhCCCC
Q 012845 270 LLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSP----------------EICEKLIFKLVGWEL 333 (455)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~ 333 (455)
....|+..+.++.......++.......++.+.++-. .+..... +.+.+.+.+..
T Consensus 235 -~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~----~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av---- 305 (509)
T KOG1298|consen 235 -RLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQ----KLPSIANGEMATYMKESVAPQIPEKLRESFLEAV---- 305 (509)
T ss_pred -CCCCCCcceEEecCCCcEEEEEecchheEEEEecCcc----cCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHh----
Confidence 1234555666666555555666666666666665421 1111111 11222222211
Q ss_pred CCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc---CCCCchhhhhHH
Q 012845 334 SDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYE 410 (455)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~---~~~~~~al~~Y~ 410 (455)
++..+ .. ++-...+...+...+++++|||..+-||.+|.||.-|+.|..+|-+.|.-..+ .....+.++.|.
T Consensus 306 ~~g~i---rs--mpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy 380 (509)
T KOG1298|consen 306 DEGNI---RS--MPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFY 380 (509)
T ss_pred hccch---hc--CccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 11111 11 11111222222347999999999999999999999999999999988865321 112347789999
Q ss_pred HhhhHHHHHhHHhHHHHHHHHhc
Q 012845 411 TERKPIAEFNTALSVQNFRAAME 433 (455)
Q Consensus 411 ~~r~~~~~~~~~~s~~~~~~~~~ 433 (455)
-.|++....+.-++..+|+-+..
T Consensus 381 ~~RKp~s~tINtLa~Aly~vf~a 403 (509)
T KOG1298|consen 381 WIRKPYSATINTLANALYQVFVA 403 (509)
T ss_pred HhhcchhHHHHHHHHHHHHHhcC
Confidence 99999999999999999987653
No 58
>PLN02463 lycopene beta cyclase
Probab=99.93 E-value=1.6e-23 Score=210.27 Aligned_cols=329 Identities=14% Similarity=0.164 Sum_probs=192.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
...+||+||||||||+++|+.|++.|++|.|||+.+... ..+.+++. .+.++.+ |+.+.+... |.....
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~-~p~~~g~w---~~~l~~l-gl~~~l~~~------w~~~~v 94 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI-WPNNYGVW---VDEFEAL-GLLDCLDTT------WPGAVV 94 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch-hccccchH---HHHHHHC-CcHHHHHhh------CCCcEE
Confidence 456899999999999999999999999999999975431 11222221 2346666 777766432 222222
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
.... +.... ....+..++|..|.+.|++.+.+.|+ +++ ..+|+++
T Consensus 95 ~~~~-~~~~~--------------~~~~y~~V~R~~L~~~Ll~~~~~~GV-------------------~~~-~~~V~~I 139 (447)
T PLN02463 95 YIDD-GKKKD--------------LDRPYGRVNRKKLKSKMLERCIANGV-------------------QFH-QAKVKKV 139 (447)
T ss_pred EEeC-CCCcc--------------ccCcceeEEHHHHHHHHHHHHhhcCC-------------------EEE-eeEEEEE
Confidence 1111 10000 01224568999999999999988876 665 5799999
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (455)
+..++.+.|++. +|. ++++|+||+|||.+|.+.+.-. .....++..+........... ......++
T Consensus 140 ~~~~~~~~V~~~---dG~----~i~A~lVI~AdG~~s~l~~~~~---~~~~g~Q~a~Gi~~ev~~~p~----d~~~~vlM 205 (447)
T PLN02463 140 VHEESKSLVVCD---DGV----KIQASLVLDATGFSRCLVQYDK---PFNPGYQVAYGILAEVDSHPF----DLDKMLFM 205 (447)
T ss_pred EEcCCeEEEEEC---CCC----EEEcCEEEECcCCCcCccCCCC---CCCccceeeeeEEeecCCCCc----ccccchhh
Confidence 988887777776 664 7899999999999998764321 111223333322222111110 00011111
Q ss_pred EEccCc--------------eEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh---CCCCCCeeEEEeec
Q 012845 281 IFNTEA--------------IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKP 343 (455)
Q Consensus 281 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~ 343 (455)
.+.... ..+++..|.+.++..+..... ......+.+.+.+.+.+++ +.....+.......
T Consensus 206 D~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l---~s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~ 282 (447)
T PLN02463 206 DWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSL---VARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCV 282 (447)
T ss_pred hcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeee---ecCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeE
Confidence 111000 123334444444433221100 0111223445555555443 32222222222233
Q ss_pred eEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCC---------c---hhhhhHHH
Q 012845 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP---------A---SILNTYET 411 (455)
Q Consensus 344 ~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~---------~---~al~~Y~~ 411 (455)
.|+.... + .. .+++++|||||+.++|.+|.|+..++..|..+++++.++++.... . +.|..|++
T Consensus 283 IPmg~~~-~-~~--~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~ 358 (447)
T PLN02463 283 IPMGGPL-P-VI--PQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIER 358 (447)
T ss_pred eeCCCCC-C-CC--CCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhH
Confidence 4443221 1 22 379999999999999999999999999999999999999864433 1 56777777
Q ss_pred hhhHHH-----HHhHH----hHHHHHHHHhcccc
Q 012845 412 ERKPIA-----EFNTA----LSVQNFRAAMEVPS 436 (455)
Q Consensus 412 ~r~~~~-----~~~~~----~s~~~~~~~~~~~~ 436 (455)
.|+.+. +.+++ .-+.+|..++++|.
T Consensus 359 ~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~ 392 (447)
T PLN02463 359 RRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEP 392 (447)
T ss_pred hHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCH
Confidence 776554 23333 34666777777763
No 59
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.91 E-value=2.5e-22 Score=198.25 Aligned_cols=305 Identities=12% Similarity=0.156 Sum_probs=175.0
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCC--CcccccceEE
Q 012845 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP--PVDLWRKFIY 120 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~--~~~~~~~~~~ 120 (455)
||+|||||+||+++|+.|++. |++|+|+|+.+..... ..+.+. .. ++.+.....-. ....|..+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~tw~~~--------~~-~~~~~~~~~~~~~v~~~W~~~~v 70 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-HTWSFF--------DS-DLSDAQHAWLADLVQTDWPGYEV 70 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-ccceec--------cc-ccchhhhhhhhhhheEeCCCCEE
Confidence 899999999999999999987 9999999998644311 111111 11 22111111000 0123443333
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
........+ +..+..|.+.+|.+.|++.+.. .++.+.+|+++
T Consensus 71 ~~~~~~~~l----------------~~~Y~~I~r~~f~~~l~~~l~~----------------------~i~~~~~V~~v 112 (370)
T TIGR01789 71 RFPKYRRKL----------------KTAYRSMTSTRFHEGLLQAFPE----------------------GVILGRKAVGL 112 (370)
T ss_pred ECcchhhhc----------------CCCceEEEHHHHHHHHHHhhcc----------------------cEEecCEEEEE
Confidence 321111110 1234678899999999776533 36678999988
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (455)
+ ++++ ++. +|. ++++|+||+|+|.+|.-... ..++..+......... .....+..+-+
T Consensus 113 ~--~~~v--~l~---dg~----~~~A~~VI~A~G~~s~~~~~--------~~~Q~f~G~~~r~~~p---~~~~~~~lMD~ 170 (370)
T TIGR01789 113 D--ADGV--DLA---PGT----RINARSVIDCRGFKPSAHLK--------GGFQVFLGREMRLQEP---HGLENPIIMDA 170 (370)
T ss_pred e--CCEE--EEC---CCC----EEEeeEEEECCCCCCCcccc--------ceeeEEEEEEEEEcCC---CCCCccEEEee
Confidence 3 3443 334 665 78999999999999752111 2344444444333211 11222222222
Q ss_pred EEc-cCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh---CCCCCCeeEEEeeceEecee--eeccc
Q 012845 281 IFN-TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHAE--VAEKF 354 (455)
Q Consensus 281 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~ 354 (455)
... .++..+.+..|...++..+.-+...+ ....+.+.+.+.+..+. ++....+.......+|+... ....+
T Consensus 171 ~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~---~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~ 247 (370)
T TIGR01789 171 TVDQLAGYRFVYVLPLGSHDLLIEDTYYAD---DPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLGGDFSAYQ 247 (370)
T ss_pred eccCCCCceEEEECcCCCCeEEEEEEeccC---CCCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeecCCCccccc
Confidence 222 34455556677777776665332222 22334555555555543 44434433333344454321 11112
Q ss_pred ccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHH
Q 012845 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV 425 (455)
Q Consensus 355 ~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~ 425 (455)
.. .++++++|||||.++|.+|+|++.+++||..|++++.- ++.....++..|.+.|+.+.......-+
T Consensus 248 ~~-~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (370)
T TIGR01789 248 DE-VRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDL--SSEQLAAFIDSRARRHWSKTGYYRLLNR 315 (370)
T ss_pred cc-CCceeeeecccccccccccccHHHHHHHHHHHHhccCc--CccchhhhhhHHHHHHHHHhHHHHHHHH
Confidence 21 36799999999999999999999999999999988841 1223345678888887777665544333
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.90 E-value=3.7e-22 Score=201.70 Aligned_cols=335 Identities=16% Similarity=0.215 Sum_probs=185.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHH--HHhcCCCc------c
Q 012845 45 PVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IERSQPPV------D 113 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g---~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~--l~~~~~~~------~ 113 (455)
||+|||||+||.++|..|++.+ ++|+|||+...+. .+-|....|....+++.+ |+.+. +.+..... .
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~-~~vGe~~~p~~~~~~~~l-gi~e~~~~~~~~~~~k~g~~f~ 78 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR-IGVGESTLPSLRPFLRRL-GIDEADFMRACDATFKLGIRFV 78 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHH-T--HHHHCHHCT-EEESEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC-CCccccchHHHHHHHHHc-CCChHHHHHHhCCeEeccEEee
Confidence 7999999999999999999998 8999999887654 344566777788889999 99876 44432211 1
Q ss_pred ccc----ceEEeecCCCCcccccc----C------CCcc---------------cc-----ccccCCccccccchhhHHH
Q 012845 114 LWR----KFIYCTSVTGPILGSVD----H------MQPQ---------------DF-----EKVVSPVSVAHFSQYKLNK 159 (455)
Q Consensus 114 ~~~----~~~~~~~~~~~~~~~~~----~------~~~~---------------~~-----~~~~~~~~~~~i~r~~l~~ 159 (455)
.|. .+..-+...|......+ + .... .+ .........++++|..+.+
T Consensus 79 ~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~ 158 (454)
T PF04820_consen 79 NWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQ 158 (454)
T ss_dssp SSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHH
T ss_pred ecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHH
Confidence 122 11111111111111100 0 0000 00 0011123468899999999
Q ss_pred HHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE--EEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 160 LLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN--VIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 160 ~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~--v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
.|++.+.+.|+ +++.+ +|+.+..++++.. |++. +|. ++++|++|+|+|..|
T Consensus 159 ~L~~~A~~~Gv-------------------~~~~g-~V~~v~~~~~g~i~~v~~~---~g~----~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 159 FLRRHAEERGV-------------------EVIEG-TVVDVELDEDGRITAVRLD---DGR----TIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHTT--------------------EEEET--EEEEEE-TTSEEEEEEET---TSE----EEEESEEEE-SGGG-
T ss_pred HHHHHHhcCCC-------------------EEEeC-EEEEEEEcCCCCEEEEEEC---CCC----EEEEeEEEECCCccc
Confidence 99999999997 77776 5788877666543 4433 554 899999999999999
Q ss_pred hhhhh-cCCCccCCcccc---eeEEEEEecCCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCC
Q 012845 238 TVRKL-VGIDLVGEKDLQ---KLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNL 313 (455)
Q Consensus 238 ~vr~~-l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (455)
.+.++ ++..+....... ..+........ ...+.+.... .+.+ |++..|..+.... ...+..
T Consensus 212 ~L~~~~L~~~~~~~~~~L~~d~av~~~~~~~~------~~~~~T~~~a-~~~G--W~W~IPL~~~~~~-G~V~s~----- 276 (454)
T PF04820_consen 212 LLARKALKVGFRDWSDWLPNDRAVAVQVPNED------PPEPYTRSTA-FEAG--WIWYIPLQNRRGS-GYVYSS----- 276 (454)
T ss_dssp CCCCCCT-EEEEEETTTCEEEEEEEEEEE-SS------CTTSSEEEEE-ESSE--EEEEEEESSEEEE-EEEEET-----
T ss_pred hhhHhhhcCCCccccccccccEEEEEecCcCC------CCCCceeEEe-cCCc--eEEEccCCCcceE-EEEecc-----
Confidence 98776 332222221111 11122211111 1233333332 2333 4444444443333 221111
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHH
Q 012845 314 EDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393 (455)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L 393 (455)
...+++...+.+.+.++....... ...++......... .+|+++|||||++++|+.++|+.+++..+..|++.|
T Consensus 277 ~~~s~~~A~~~l~~~l~~~~~~~~----~~i~~~~g~~~~~~--~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l 350 (454)
T PF04820_consen 277 DFISDDEAEAELLAYLGGSPEAEP----RHIRFRSGRRKQFW--GKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEAL 350 (454)
T ss_dssp TTSHHHHHHHHHHHHHTCHCTTSC----EEEE-S-EEESSSE--ETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTH
T ss_pred ccCCHHHHHHHHHHhcchhhhcch----hhhcccccchhhcc--cCCEEEEcchhhccCccccccHHHHHHHHHHHHHhc
Confidence 111444444445554443322211 11122222233333 389999999999999999999999999888888777
Q ss_pred HHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845 394 ASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432 (455)
Q Consensus 394 ~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 432 (455)
.. ......+++.|++..+...+.+.++-..+|..-.
T Consensus 351 ~~---~~~~~~~~~~Yn~~~~~~~~~~~~fi~~hY~~~~ 386 (454)
T PF04820_consen 351 PD---DDFSPAALDRYNRRMRREYERIRDFISLHYQLSR 386 (454)
T ss_dssp HC---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 63 3345789999999999999999999999988533
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.88 E-value=4e-20 Score=183.35 Aligned_cols=282 Identities=16% Similarity=0.212 Sum_probs=170.4
Q ss_pred CEEEECCCHHHHHHHHHH--HhCCCCEEEEcCCCCCC-CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845 45 PVLIVGAGPVGLVLSILL--TKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~L--a~~g~~V~l~Er~~~~~-~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~ 121 (455)
||+||||||||+++|+.| ++.|.+|+|+|+.+... ...+.+....... +..+.+.. ..|....+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~-------~~~~~~v~-----~~w~~~~v~ 68 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDL-------GPLDSLVS-----HRWSGWRVY 68 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccc-------cchHHHHh-----eecCceEEE
Confidence 899999999999999999 77899999999987651 2222222221111 11222222 234433333
Q ss_pred ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (455)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~ 201 (455)
......... ...+..+++..|.+.|.+.+.. +. .++.+.+|++++
T Consensus 69 ~~~~~~~~~---------------~~~Y~~i~~~~f~~~l~~~~~~-~~-------------------~~~~~~~V~~i~ 113 (374)
T PF05834_consen 69 FPDGSRILI---------------DYPYCMIDRADFYEFLLERAAA-GG-------------------VIRLNARVTSIE 113 (374)
T ss_pred eCCCceEEc---------------ccceEEEEHHHHHHHHHHHhhh-CC-------------------eEEEccEEEEEE
Confidence 322111110 1235678999999999999984 43 678999999999
Q ss_pred ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEE
Q 012845 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281 (455)
Q Consensus 202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (455)
..++...+++. +|. ++++++||+|+|..+...+.. .++..+........... ....+...-+.
T Consensus 114 ~~~~~~~v~~~---~g~----~i~a~~VvDa~g~~~~~~~~~--------~~Q~f~G~~v~~~~~~f--~~~~~~lMD~r 176 (374)
T PF05834_consen 114 ETGDGVLVVLA---DGR----TIRARVVVDARGPSSPKARPL--------GLQHFYGWEVETDEPVF--DPDTATLMDFR 176 (374)
T ss_pred ecCceEEEEEC---CCC----EEEeeEEEECCCccccccccc--------ccceeEEEEEeccCCCC--CCCceEEEEec
Confidence 98887777776 776 889999999999776522222 23444444433332211 11122212222
Q ss_pred Ecc--CceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHh---hCCCCCCeeEEEeeceEeceeeeccccc
Q 012845 282 FNT--EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKL---VGWELSDIDVIDIKPWVMHAEVAEKFLC 356 (455)
Q Consensus 282 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (455)
... ++..+++..|...++..+..+...+. ...+.+.+.+.+.++ .++....+.......+|+......+..
T Consensus 177 ~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~---~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IPm~~~~~~~~~- 252 (374)
T PF05834_consen 177 VPQSADGPSFLYVLPFSEDRALVEETSFSPR---PALPEEELKARLRRYLERLGIDDYEILEEERGVIPMTTGGFPPRF- 252 (374)
T ss_pred ccCCCCCceEEEEEEcCCCeEEEEEEEEcCC---CCCCHHHHHHHHHHHHHHcCCCceeEEEeecceeecccCCCcccc-
Confidence 221 24455566666666655543332221 123444455554444 344444333334445666322222222
Q ss_pred CCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHH
Q 012845 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395 (455)
Q Consensus 357 ~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~ 395 (455)
.++++.+|+|++.++|.+|.++..++..+..+++.|.+
T Consensus 253 -~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 253 -GQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred -CCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 27899999999999999999999999999999988875
No 62
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.61 E-value=6.7e-15 Score=135.25 Aligned_cols=190 Identities=18% Similarity=0.144 Sum_probs=120.8
Q ss_pred eCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEEee
Q 012845 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP 305 (455)
Q Consensus 226 ~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (455)
|.++|+|||..|.+|+.+.. ........++........ .+.++..+.+....+...++.......+..+.++
T Consensus 2 A~LtivaDG~~S~fRk~l~~--~~~~v~S~fvGl~l~~~~------lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp 73 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSD--NKPQVRSYFVGLILKDAP------LPKPNHGHVILGKPGPILLYQISSNETRVLVDVP 73 (276)
T ss_pred CCEEEEecCCchHHHHhhcC--CCCceeeeEEEEEEcCCC------CCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeC
Confidence 68999999999999999962 222233333433333322 2345566667777666677766666677777766
Q ss_pred cC-CCCCCCCCCCHHHHHHH------------HHHhhCCCCCCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCC
Q 012845 306 FY-PPQQNLEDFSPEICEKL------------IFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFP 372 (455)
Q Consensus 306 ~~-~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~ 372 (455)
.. .|. .+...+.+. ++..+....+.. .....|.. ..+.......+++++|||++..|
T Consensus 74 ~~k~P~-----~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~---rirsMPn~--~lp~~~~~~~G~vllGDA~nmrH 143 (276)
T PF08491_consen 74 GPKLPS-----VSNGELKEYLREVVAPQLPEELRPSFEKALEDG---RIRSMPNS--FLPASPNWKPGVVLLGDAANMRH 143 (276)
T ss_pred CCccCC-----ccchHHHHHHHHHHHhhchHHHHHHHHHHhccC---Ccceeccc--ccCCCCCCCCCEEEEehhhcCcC
Confidence 43 121 111112221 111111111111 11112211 11111112478999999999999
Q ss_pred CCcCccchhhHHHHHHHHHHHHHhH--cC-CCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845 373 PAGGFGMNTGVQDAHNLAWKIASVL--KD-IAPASILNTYETERKPIAEFNTALSVQNFRAAME 433 (455)
Q Consensus 373 P~~G~G~~~Al~da~~La~~L~~~~--~~-~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 433 (455)
|++|+||+.|+.|+.+|++.|.... .+ ....++++.|..+|++....+.-+|..+|..+..
T Consensus 144 PLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a 207 (276)
T PF08491_consen 144 PLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAA 207 (276)
T ss_pred CccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998761 11 1245799999999999999999999999987764
No 63
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.54 E-value=2.2e-14 Score=136.73 Aligned_cols=151 Identities=22% Similarity=0.279 Sum_probs=99.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-----cccccCh--hHHHHHHhhhchHHHH---HhcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-----QAHFINN--RYALVFRKLDGLAEEI---ERSQPP 111 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~-----~~~~l~~--~~~~~l~~~~gl~~~l---~~~~~~ 111 (455)
+.+||+||||||||++||+.++++|.+|+|||+.+.+..+. ....++. ..-+++.+.|+=...+ .....+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 57899999999999999999999999999999999875422 1122221 1334444444111111 111111
Q ss_pred cccccc-----eEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCccccccccc
Q 012845 112 VDLWRK-----FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLL 186 (455)
Q Consensus 112 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~ 186 (455)
.+.... ..++....|.++. ....-..+.++|+.++++.|+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp-------------------~sdkA~~Iv~~ll~~~~~~gV---------------- 126 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFP-------------------DSDKASPIVDALLKELEALGV---------------- 126 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecC-------------------CccchHHHHHHHHHHHHHcCc----------------
Confidence 111000 1111111222211 112346799999999999997
Q ss_pred ccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 187 QGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 187 ~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
+++.+++|.+++.++....+.+. +|. ++.||-+|.|+|..|
T Consensus 127 ---~i~~~~~v~~v~~~~~~f~l~t~---~g~----~i~~d~lilAtGG~S 167 (408)
T COG2081 127 ---TIRTRSRVSSVEKDDSGFRLDTS---SGE----TVKCDSLILATGGKS 167 (408)
T ss_pred ---EEEecceEEeEEecCceEEEEcC---CCC----EEEccEEEEecCCcC
Confidence 99999999999998877778776 775 789999999999666
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.51 E-value=3e-13 Score=126.63 Aligned_cols=144 Identities=18% Similarity=0.242 Sum_probs=95.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCccc--c-----cChhHHHHHHhhhchHHHHHhcCCCcc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAH--F-----INNRYALVFRKLDGLAEEIERSQPPVD 113 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~--~-----l~~~~~~~l~~~~gl~~~l~~~~~~~~ 113 (455)
...+||+||||||||+++|+.|++.|++|+|+||...+.....+. . +......+|+++ +.+..
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~----------gv~~~ 92 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEF----------GIRYK 92 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHC----------CCCce
Confidence 346899999999999999999999999999999998764221111 1 111112222222 21110
Q ss_pred cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEe
Q 012845 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (455)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~ 193 (455)
. . ....+.+++..+...|.+.+.+.|+ ++++
T Consensus 93 ~--------~----------------------~~g~~~vd~~~l~~~L~~~A~~~Gv-------------------~I~~ 123 (257)
T PRK04176 93 E--------V----------------------EDGLYVADSVEAAAKLAAAAIDAGA-------------------KIFN 123 (257)
T ss_pred e--------e----------------------cCcceeccHHHHHHHHHHHHHHcCC-------------------EEEc
Confidence 0 0 0012346788999999999999887 9999
Q ss_pred ccEEEEeeecCC-ceE-EEEEec---cCC-cceeEEEEeCEEEeecCCCchhhhhc
Q 012845 194 GHECVSVSATDQ-CIN-VIASFL---KEG-KCTERNIQCNILIGTDGAGSTVRKLV 243 (455)
Q Consensus 194 ~~~v~~i~~~~~-~~~-v~~~~~---~~g-~~~~~~~~~d~vV~AdG~~S~vr~~l 243 (455)
+++|+++..+++ .+. +.+.+. .++ .....++++++||+|+|.+|.+.+.+
T Consensus 124 ~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 124 GVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 999999987555 332 222210 011 11234789999999999999998887
No 65
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.49 E-value=1.2e-11 Score=123.31 Aligned_cols=177 Identities=20% Similarity=0.267 Sum_probs=99.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC----CCcccccC----hh-H-HHHHHhhhchHHHHHhc-CCCc
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST----HPQAHFIN----NR-Y-ALVFRKLDGLAEEIERS-QPPV 112 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~----~~~~~~l~----~~-~-~~~l~~~~gl~~~l~~~-~~~~ 112 (455)
+||+|||||++|+++|+.|+++|.+|+|+||...+.. ...+..+. .. . ......+ .++.++.+. +...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~-~~~~~l~~~~~~~~ 79 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECY-QLWAQLEKEAGTKL 79 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHH-HHHHHHHHHhCCee
Confidence 5999999999999999999999999999999765321 11111111 01 1 1112222 445555332 1111
Q ss_pred ccccceEEeecCCCCcccc-------c----cCCCcccccccc------------CCccccccchhhHHHHHHHHHHhcc
Q 012845 113 DLWRKFIYCTSVTGPILGS-------V----DHMQPQDFEKVV------------SPVSVAHFSQYKLNKLLLKQLEKLN 169 (455)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~------------~~~~~~~i~r~~l~~~L~~~~~~~g 169 (455)
................+.. . ......+..... .......++...+.+.|.+.+.+.|
T Consensus 80 ~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g 159 (380)
T TIGR01377 80 HRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHG 159 (380)
T ss_pred EeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcC
Confidence 0001111111100000000 0 000000000000 0112345667788889999888888
Q ss_pred cccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCC-chhhhhcCCCcc
Q 012845 170 FKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG-STVRKLVGIDLV 248 (455)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~-S~vr~~l~~~~~ 248 (455)
+ +++.+++|++++.+++.+.|.+. ++ ++.+|.||.|+|.+ +.+++.++....
T Consensus 160 ~-------------------~~~~~~~V~~i~~~~~~~~v~~~---~~-----~i~a~~vV~aaG~~~~~l~~~~g~~~~ 212 (380)
T TIGR01377 160 A-------------------TVRDGTKVVEIEPTELLVTVKTT---KG-----SYQANKLVVTAGAWTSKLLSPLGIEIP 212 (380)
T ss_pred C-------------------EEECCCeEEEEEecCCeEEEEeC---CC-----EEEeCEEEEecCcchHHHhhhcccCCC
Confidence 6 89999999999887777666544 44 67899999999876 557777764433
No 66
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.49 E-value=7.3e-13 Score=123.60 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=94.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccc-------cChhHHHHHHhhhchHHHHHhcCCCccc
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHF-------INNRYALVFRKLDGLAEEIERSQPPVDL 114 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~-------l~~~~~~~l~~~~gl~~~l~~~~~~~~~ 114 (455)
..+||+||||||+||++|+.|+++|++|+|+||+..+.....+.+ +.....++++++ +.+...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~----------gi~~~~ 89 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEF----------GIRYED 89 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHC----------CCCeee
Confidence 468999999999999999999999999999999987632211111 011111111111 111100
Q ss_pred ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (455)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~ 194 (455)
. .......++..+.+.|.+.+.+.|+ +++++
T Consensus 90 ----------~--------------------~~g~~~~~~~el~~~L~~~a~e~GV-------------------~I~~~ 120 (254)
T TIGR00292 90 ----------E--------------------GDGYVVADSAEFISTLASKALQAGA-------------------KIFNG 120 (254)
T ss_pred ----------c--------------------cCceEEeeHHHHHHHHHHHHHHcCC-------------------EEECC
Confidence 0 0112234678899999999999887 99999
Q ss_pred cEEEEeeecCCc--eE-EEEEec---cCCc-ceeEEEEeCEEEeecCCCchhhhhc
Q 012845 195 HECVSVSATDQC--IN-VIASFL---KEGK-CTERNIQCNILIGTDGAGSTVRKLV 243 (455)
Q Consensus 195 ~~v~~i~~~~~~--~~-v~~~~~---~~g~-~~~~~~~~d~vV~AdG~~S~vr~~l 243 (455)
++|.++..+++. +. +.+.+. ..+. ....++.+++||+|+|..|.+.+.+
T Consensus 121 t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 121 TSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred cEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 999999876663 32 222210 0110 1134789999999999999888777
No 67
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.46 E-value=7.2e-12 Score=118.83 Aligned_cols=345 Identities=20% Similarity=0.191 Sum_probs=169.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCCC-cccccChhHHHHHHhhhchHHHHHhcCCCcc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVD 113 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~------g~~V~l~Er~~~~~~~~-~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~ 113 (455)
...+||+|||||||||++|+.|.|. .++|.|+||...+..+. .|-.|.|.+++-| .+...+.+.|..
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL------~P~wke~~apl~ 147 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL------LPDWKEDGAPLN 147 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhh------CcchhhcCCccc
Confidence 3468999999999999999999765 57899999998875433 3445555443221 222223233221
Q ss_pred cc---cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccce
Q 012845 114 LW---RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE 190 (455)
Q Consensus 114 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (455)
.- ..+.+. .+......+...+.+ ...-+.++-..|.++|-+.+++.|+++-++.++ +++-
T Consensus 148 t~vT~d~~~fL---t~~~~i~vPv~~pm~------NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aa--------Sevl 210 (621)
T KOG2415|consen 148 TPVTSDKFKFL---TGKGRISVPVPSPMD------NHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAA--------SEVL 210 (621)
T ss_pred ccccccceeee---ccCceeecCCCcccc------cCCcEEEEHHHHHHHHHHHHHhhCceeccccch--------hhee
Confidence 10 111111 111111111111111 112345677899999999999999965555544 1112
Q ss_pred EEeccEEEEeeecCCceEEEEEeccCCcce-----eEEEEeCEEEeecCCCchhhhhc----CCC--ccCCcccceeEEE
Q 012845 191 ILMGHECVSVSATDQCINVIASFLKEGKCT-----ERNIQCNILIGTDGAGSTVRKLV----GID--LVGEKDLQKLVSV 259 (455)
Q Consensus 191 i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~-----~~~~~~d~vV~AdG~~S~vr~~l----~~~--~~~~~~~~~~~~~ 259 (455)
+..+..|+.|...+-++. ++|... ...+.+++-|-|.|.+..+.+++ ++. .....|.-++-.+
T Consensus 211 y~edgsVkGiaT~D~GI~------k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEv 284 (621)
T KOG2415|consen 211 YDEDGSVKGIATNDVGIS------KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEV 284 (621)
T ss_pred EcCCCcEeeEeecccccc------CCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceecccccee
Confidence 333445555544332210 122110 12678999999999999888776 221 1111122111111
Q ss_pred EEecCCcccccccCCCceEEEEEc----cC--ceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHH-----HHHh
Q 012845 260 HFLSKDLGDYLLNERPGMLFFIFN----TE--AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKL-----IFKL 328 (455)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~ 328 (455)
..+.+ ...+|+......+ .+ +..+++.+..+....-+.+.++-.+..+..+ +++.++ +.+.
T Consensus 285 Wei~~------~~~~pG~v~HT~GwPl~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~--~EFQk~K~hP~i~~v 356 (621)
T KOG2415|consen 285 WEIDP------ENHNPGEVAHTLGWPLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPY--KEFQKMKHHPSISKV 356 (621)
T ss_pred EecCh------hhcCCcceeeeccCcccCCccCceeEEEcCCCeEEEEEEEEecCCCCCCCHH--HHHHHhhcCcchhhh
Confidence 11111 1122222221110 01 1122222221111111222232223332211 112211 1111
Q ss_pred hCCCCCCeeEEEeeceEece----eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCc-
Q 012845 329 VGWELSDIDVIDIKPWVMHA----EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPA- 403 (455)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~- 403 (455)
+. ..+.+......++. ..+ ... -.+=+|||=+|++|+----.|...||.++.++|+.+-+.+++.+..
T Consensus 357 le----Ggk~i~YgARaLNEGGfQsiP-kl~--FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k 429 (621)
T KOG2415|consen 357 LE----GGKRIAYGARALNEGGFQSIP-KLV--FPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSK 429 (621)
T ss_pred hc----CcceeeehhhhhccCCcccCc-ccc--cCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCcccc
Confidence 11 11111111111110 111 111 1445899999999998889999999999999999999888654322
Q ss_pred -hh--hhhHHHhhhHHHHHhHHhHHHHHH
Q 012845 404 -SI--LNTYETERKPIAEFNTALSVQNFR 429 (455)
Q Consensus 404 -~a--l~~Y~~~r~~~~~~~~~~s~~~~~ 429 (455)
.. +..|++.-+...-.--..|.++++
T Consensus 430 ~~~~~~~~Ye~nlkds~V~KeLysvRNir 458 (621)
T KOG2415|consen 430 MAGLDPTTYEENLKDSYVWKELYSVRNIR 458 (621)
T ss_pred ccccChhhHHHhhhhhHHHHHHHHhhccC
Confidence 12 448888766655444444444443
No 68
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.40 E-value=2.9e-10 Score=113.32 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=48.7
Q ss_pred ccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEE
Q 012845 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (455)
Q Consensus 151 ~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV 230 (455)
.++...+...+.+.+.+.|+ +++.+++|++++.+++.+.+.+. +| .+.+|.||
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv-------------------~i~~~~~v~~i~~~~~~~~v~~~---~g-----~~~a~~vV 197 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGA-------------------ELLFNEPVTAIEADGDGVTVTTA---DG-----TYEAKKLV 197 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCC-------------------EEECCCEEEEEEeeCCeEEEEeC---CC-----EEEeeEEE
Confidence 45666777778888888776 99999999999987777666554 44 67899999
Q ss_pred eecCCCch
Q 012845 231 GTDGAGST 238 (455)
Q Consensus 231 ~AdG~~S~ 238 (455)
.|+|.++.
T Consensus 198 ~A~G~~~~ 205 (376)
T PRK11259 198 VSAGAWVK 205 (376)
T ss_pred EecCcchh
Confidence 99999864
No 69
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.38 E-value=7.8e-12 Score=110.15 Aligned_cols=144 Identities=18% Similarity=0.268 Sum_probs=89.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcc-------cccChhHHHHHHhhhchHHHHHhcCCCcc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA-------HFINNRYALVFRKLDGLAEEIERSQPPVD 113 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~-------~~l~~~~~~~l~~~~gl~~~l~~~~~~~~ 113 (455)
..++||+||||||+||++|+.|++.|++|.||||+..+.....+ ..+...+..+|+++ |+. ..
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el-gi~---------y~ 84 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL-GIP---------YE 84 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH-T------------E
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC-Cce---------eE
Confidence 34799999999999999999999999999999999887533222 22334556666655 442 11
Q ss_pred cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEe
Q 012845 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (455)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~ 193 (455)
.. ....+..+...+...|...+.+.|+ +|+.
T Consensus 85 ~~------------------------------~~g~~v~d~~~~~s~L~s~a~~aGa-------------------kifn 115 (230)
T PF01946_consen 85 EY------------------------------GDGYYVADSVEFTSTLASKAIDAGA-------------------KIFN 115 (230)
T ss_dssp E-------------------------------SSEEEES-HHHHHHHHHHHHHTTTE-------------------EEEE
T ss_pred Ee------------------------------CCeEEEEcHHHHHHHHHHHHhcCCC-------------------EEEe
Confidence 00 1123445777888888888888887 8999
Q ss_pred ccEEEEeeecC-CceE-EEEEecc---CC-cceeEEEEeCEEEeecCCCchhhhhc
Q 012845 194 GHECVSVSATD-QCIN-VIASFLK---EG-KCTERNIQCNILIGTDGAGSTVRKLV 243 (455)
Q Consensus 194 ~~~v~~i~~~~-~~~~-v~~~~~~---~g-~~~~~~~~~d~vV~AdG~~S~vr~~l 243 (455)
.+.|+++...+ +.+. +.+.+.- .+ -=...++++++||+|+|..+.+-+.+
T Consensus 116 ~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~~ 171 (230)
T PF01946_consen 116 LTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRVL 171 (230)
T ss_dssp TEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred eeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHHH
Confidence 99999998776 4444 3332210 11 00124789999999999887654443
No 70
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.37 E-value=1.9e-13 Score=135.72 Aligned_cols=140 Identities=21% Similarity=0.341 Sum_probs=77.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----cc-cccC-----------------hhHHHHHHhhhch
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QA-HFIN-----------------NRYALVFRKLDGL 101 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~~-~~l~-----------------~~~~~~l~~~~gl 101 (455)
|||+||||||||++||+.|++.|.+|+||||++.+..+. .| ..++ ......|+++ +.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f-~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF-SP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS--H
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC-CH
Confidence 799999999999999999999999999999998764210 00 0000 1122334443 22
Q ss_pred H---HHHHhcCCCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCc
Q 012845 102 A---EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT 178 (455)
Q Consensus 102 ~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~ 178 (455)
. .-+.+.+.+... ..++... | ..-.-..+.+.|++.+++.|+
T Consensus 80 ~d~~~ff~~~Gv~~~~--------~~~gr~f----------------P---~s~~a~~Vv~~L~~~l~~~gv-------- 124 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKI--------EEDGRVF----------------P---KSDKASSVVDALLEELKRLGV-------- 124 (409)
T ss_dssp HHHHHHHHHTT--EEE---------STTEEE----------------E---TT--HHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHhcCCeEEE--------cCCCEEC----------------C---CCCcHHHHHHHHHHHHHHcCC--------
Confidence 1 122222222100 0011110 1 112356899999999999997
Q ss_pred ccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 179 EGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 179 ~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
+|+++++|.+++.++++ +.|.+. ++. .+.+|.||.|+|..|
T Consensus 125 -----------~i~~~~~V~~i~~~~~~~f~v~~~---~~~----~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 125 -----------EIHFNTRVKSIEKKEDGVFGVKTK---NGG----EYEADAVILATGGKS 166 (409)
T ss_dssp -----------EEE-S--EEEEEEETTEEEEEEET---TTE----EEEESEEEE----SS
T ss_pred -----------EEEeCCEeeeeeecCCceeEeecc---Ccc----cccCCEEEEecCCCC
Confidence 99999999999987777 556652 333 889999999999776
No 71
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.37 E-value=8.1e-10 Score=114.05 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=101.3
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-CCcccccChhHHHHHHhhh-chH-H------HHHhcCC
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-HPQAHFINNRYALVFRKLD-GLA-E------EIERSQP 110 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~-~~~~~~l~~~~~~~l~~~~-gl~-~------~l~~~~~ 110 (455)
|+.++||+|||||++|+++|+.|+++|++|+|+||.+.... .++...+-..+.+.+.... .+. + .+.....
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap 82 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAP 82 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCC
Confidence 35669999999999999999999999999999999965421 1222222222233333210 111 1 1111111
Q ss_pred CcccccceEEeecCCCC--c-----------------cc---cccCC-----Cc--cccccccCCccccccchhhHHHHH
Q 012845 111 PVDLWRKFIYCTSVTGP--I-----------------LG---SVDHM-----QP--QDFEKVVSPVSVAHFSQYKLNKLL 161 (455)
Q Consensus 111 ~~~~~~~~~~~~~~~~~--~-----------------~~---~~~~~-----~~--~~~~~~~~~~~~~~i~r~~l~~~L 161 (455)
.......+.+....... . +. ..+.. .. ....... .+....++...|...+
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~-~~~dg~vd~~rl~~~l 161 (502)
T PRK13369 83 HIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGF-EYSDCWVDDARLVVLN 161 (502)
T ss_pred ccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEE-EEcCeeecHHHHHHHH
Confidence 11000001111000000 0 00 00000 00 0000000 1112346677888888
Q ss_pred HHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch-hh
Q 012845 162 LKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VR 240 (455)
Q Consensus 162 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~-vr 240 (455)
...+.+.|+ .++.+++|+++..+++.+.+.+. ++.+.+.++.+++||.|+|.++. +.
T Consensus 162 ~~~a~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~---~~~g~~~~i~a~~VVnAaG~wa~~l~ 219 (502)
T PRK13369 162 ALDAAERGA-------------------TILTRTRCVSARREGGLWRVETR---DADGETRTVRARALVNAAGPWVTDVI 219 (502)
T ss_pred HHHHHHCCC-------------------EEecCcEEEEEEEcCCEEEEEEE---eCCCCEEEEEecEEEECCCccHHHHH
Confidence 888888887 99999999999887776667665 33333457899999999999986 54
Q ss_pred hhc
Q 012845 241 KLV 243 (455)
Q Consensus 241 ~~l 243 (455)
+.+
T Consensus 220 ~~~ 222 (502)
T PRK13369 220 HRV 222 (502)
T ss_pred hhc
Confidence 433
No 72
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.36 E-value=7.7e-11 Score=116.09 Aligned_cols=173 Identities=20% Similarity=0.270 Sum_probs=98.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC---CCcccccCh-------hHHHHH-HhhhchHHHHHh-cCCCc
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST---HPQAHFINN-------RYALVF-RKLDGLAEEIER-SQPPV 112 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~---~~~~~~l~~-------~~~~~l-~~~~gl~~~l~~-~~~~~ 112 (455)
||+|||||++|+++|+.|++.|++|+|+|+...... ...+..... ...++. ..+ ..+..+.. .+.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 79 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESV-EFWRELAEEYGIPV 79 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHH-HHHHHHHHHTTSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhc-cchhhhhhhcCccc
Confidence 799999999999999999999999999999944321 112222111 111111 111 33444422 22222
Q ss_pred cc--ccceEEeecCCCCc-c-------ccccC----CCcccccc----cc-------CCccccccchhhHHHHHHHHHHh
Q 012845 113 DL--WRKFIYCTSVTGPI-L-------GSVDH----MQPQDFEK----VV-------SPVSVAHFSQYKLNKLLLKQLEK 167 (455)
Q Consensus 113 ~~--~~~~~~~~~~~~~~-~-------~~~~~----~~~~~~~~----~~-------~~~~~~~i~r~~l~~~L~~~~~~ 167 (455)
.. ...+.+..+..... + ..... ........ .. .......++-..+.+.|.+.+++
T Consensus 80 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~ 159 (358)
T PF01266_consen 80 GFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQR 159 (358)
T ss_dssp EEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHH
Confidence 11 01111110100000 0 00000 00000000 00 01224456778999999999999
Q ss_pred cccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchh-hhhcCC
Q 012845 168 LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTV-RKLVGI 245 (455)
Q Consensus 168 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v-r~~l~~ 245 (455)
.|+ +|+.+++|++++.+++.+. |.+. +| .+.+|.||.|.|.++.. .+.++.
T Consensus 160 ~Gv-------------------~i~~~~~V~~i~~~~~~v~gv~~~---~g-----~i~ad~vV~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 160 AGV-------------------EIRTGTEVTSIDVDGGRVTGVRTS---DG-----EIRADRVVLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp TT--------------------EEEESEEEEEEEEETTEEEEEEET---TE-----EEEECEEEE--GGGHHHHHHTTTT
T ss_pred hhh-------------------hccccccccchhhccccccccccc---cc-----ccccceeEecccccceeeeecccc
Confidence 987 9999999999999999887 7765 65 58999999999998863 445544
No 73
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.34 E-value=2.8e-10 Score=114.68 Aligned_cols=37 Identities=41% Similarity=0.547 Sum_probs=33.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNKA 77 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~-g~-~V~l~Er~~~ 77 (455)
...+||+|||||++|+++|+.|+++ |. +|+|+||...
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 4578999999999999999999995 96 8999999853
No 74
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.30 E-value=7.4e-10 Score=111.71 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=51.8
Q ss_pred cchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcc-eeEEEEeCEEE
Q 012845 152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKC-TERNIQCNILI 230 (455)
Q Consensus 152 i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~-~~~~~~~d~vV 230 (455)
++-..+...|.+.+.+.|+ +++.+++|++++..++.+.+.+. ++.+ ....+++|.||
T Consensus 194 ~~~~~~~~~l~~~a~~~G~-------------------~i~~~~~V~~i~~~~~~~~v~~~---~~~~~~~~~i~a~~vV 251 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGV-------------------QFRYGQEVTSIKTDGGGVVLTVQ---PSAEHPSRTLEFDGVV 251 (410)
T ss_pred cCHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEEeCCEEEEEEE---cCCCCccceEecCEEE
Confidence 4445777888888888887 99999999999887776666554 2210 01267999999
Q ss_pred eecCCCch-hhhhcC
Q 012845 231 GTDGAGST-VRKLVG 244 (455)
Q Consensus 231 ~AdG~~S~-vr~~l~ 244 (455)
.|+|.+|. +.+.++
T Consensus 252 ~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 252 VCAGVGSRALAAMLG 266 (410)
T ss_pred ECCCcChHHHHHHhC
Confidence 99999985 445454
No 75
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.29 E-value=7.8e-11 Score=119.55 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=92.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhc-----------hHHHHHhcC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDG-----------LAEEIERSQ 109 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~g-----------l~~~l~~~~ 109 (455)
....+|+|||||+|||++|..|.+.|++|+||||++..+ +.+..++..-. +.+ + +++.+....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG---G~W~~~~~~~~--d~~-~~~~~~~~~~s~~Y~~L~tn~ 81 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG---GLWVYTPKSES--DPL-SLDPTRSIVHSSVYESLRTNL 81 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc---ceeecCCCcCC--Ccc-ccCCCCcccchhhhhhhhccC
Confidence 456899999999999999999999999999999998762 22222221100 000 1 111111110
Q ss_pred CCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccc
Q 012845 110 PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR 189 (455)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (455)
. .......+........... .......+..++.++|.+.++..|+. .
T Consensus 82 p---------------~~~m~f~dfp~~~~~~~~~-~~~~~fp~~~ev~~YL~~~a~~fgl~-----------------~ 128 (461)
T PLN02172 82 P---------------RECMGYRDFPFVPRFDDES-RDSRRYPSHREVLAYLQDFAREFKIE-----------------E 128 (461)
T ss_pred C---------------HhhccCCCCCCCccccccc-CcCCCCCCHHHHHHHHHHHHHHcCCc-----------------c
Confidence 0 0000000000000000000 00011235678999999999998862 2
Q ss_pred eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 190 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
.|+++++|++++..++.+.|++. ++.+...+..+|.||.|+|..+
T Consensus 129 ~I~~~t~V~~V~~~~~~w~V~~~---~~~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 129 MVRFETEVVRVEPVDGKWRVQSK---NSGGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred eEEecCEEEEEeecCCeEEEEEE---cCCCceEEEEcCEEEEeccCCC
Confidence 48999999999988788888776 3322223567999999999865
No 76
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.29 E-value=5e-10 Score=113.19 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=50.7
Q ss_pred ccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEE
Q 012845 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL 229 (455)
Q Consensus 151 ~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~v 229 (455)
.++-..+...|.+.+.+.|+ +|+.+++|++++.+++.+. +.+. ++ ++.+|.|
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~-------------------~i~~~~~V~~i~~~~~~~~~v~t~---~~-----~~~a~~V 249 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGV-------------------KFRFNTPVDGLLVEGGRITGVQTG---GG-----VITADAY 249 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEEEecCCEEEEEEeC---Cc-----EEeCCEE
Confidence 45556788888888888886 9999999999988777654 3332 33 6789999
Q ss_pred EeecCCCch-hhhhcCC
Q 012845 230 IGTDGAGST-VRKLVGI 245 (455)
Q Consensus 230 V~AdG~~S~-vr~~l~~ 245 (455)
|.|+|.++. +.+.++.
T Consensus 250 V~a~G~~~~~l~~~~g~ 266 (416)
T PRK00711 250 VVALGSYSTALLKPLGV 266 (416)
T ss_pred EECCCcchHHHHHHhCC
Confidence 999999985 3344443
No 77
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.29 E-value=6.8e-09 Score=107.23 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=52.9
Q ss_pred ccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEE
Q 012845 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (455)
Q Consensus 151 ~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV 230 (455)
.++...|...+.+.+.+.|+ +++.+++|+++..+++.+.+++....+|+ ..++.+|.||
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~~~~g~--~~~i~a~~VV 209 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGA-------------------EILTRTRVVSARRENGLWHVTLEDTATGK--RYTVRARALV 209 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEeCCEEEEEEEEcCCCC--EEEEEcCEEE
Confidence 45667777788888888887 99999999999887776666665222232 3478999999
Q ss_pred eecCCCch-hhhh
Q 012845 231 GTDGAGST-VRKL 242 (455)
Q Consensus 231 ~AdG~~S~-vr~~ 242 (455)
.|+|.++. +.+.
T Consensus 210 nAaG~wa~~l~~~ 222 (508)
T PRK12266 210 NAAGPWVKQFLDD 222 (508)
T ss_pred ECCCccHHHHHhh
Confidence 99999985 4443
No 78
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.28 E-value=3.5e-11 Score=105.33 Aligned_cols=143 Identities=18% Similarity=0.281 Sum_probs=95.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--ccc-----ccChhHHHHHHhhhchHHHHHhcCCCccc
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QAH-----FINNRYALVFRKLDGLAEEIERSQPPVDL 114 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~--~~~-----~l~~~~~~~l~~~~gl~~~l~~~~~~~~~ 114 (455)
...||+||||||+||++|+.|+++|.+|+||||+-.+.... .|. .+...+.++|+++ |+. ...
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~-gI~---------ye~ 98 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEF-GIR---------YEE 98 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHh-CCc---------cee
Confidence 35799999999999999999999999999999998773221 111 1223444444444 331 110
Q ss_pred ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (455)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~ 194 (455)
. ..+.+..+-..+...|..++.+.|+ +|+.+
T Consensus 99 ~------------------------------e~g~~v~ds~e~~skl~~~a~~aGa-------------------ki~n~ 129 (262)
T COG1635 99 E------------------------------EDGYYVADSAEFASKLAARALDAGA-------------------KIFNG 129 (262)
T ss_pred c------------------------------CCceEEecHHHHHHHHHHHHHhcCc-------------------eeeec
Confidence 0 1113344666788888888888887 88899
Q ss_pred cEEEEeeecCC-ceE-EEEEecc---CCcc-eeEEEEeCEEEeecCCCchhhhhc
Q 012845 195 HECVSVSATDQ-CIN-VIASFLK---EGKC-TERNIQCNILIGTDGAGSTVRKLV 243 (455)
Q Consensus 195 ~~v~~i~~~~~-~~~-v~~~~~~---~g~~-~~~~~~~d~vV~AdG~~S~vr~~l 243 (455)
+.|+++...++ ++. +.+++.- .+.. ...++++++||+|+|....+-+.+
T Consensus 130 ~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 130 VSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred ceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence 99999887766 343 2222110 1100 123789999999999887776655
No 79
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.25 E-value=7.7e-10 Score=118.11 Aligned_cols=62 Identities=16% Similarity=0.264 Sum_probs=50.1
Q ss_pred cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845 150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL 229 (455)
Q Consensus 150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v 229 (455)
..++...+.+.|.+.+.+ |+ +++++++|++++..++.+.|.+. ++. .+.+|.|
T Consensus 403 G~v~p~~l~~aL~~~a~~-Gv-------------------~i~~~~~V~~i~~~~~~~~v~t~---~g~----~~~ad~V 455 (662)
T PRK01747 403 GWLCPAELCRALLALAGQ-QL-------------------TIHFGHEVARLEREDDGWQLDFA---GGT----LASAPVV 455 (662)
T ss_pred CeeCHHHHHHHHHHhccc-Cc-------------------EEEeCCEeeEEEEeCCEEEEEEC---CCc----EEECCEE
Confidence 446677888889888888 76 99999999999887777776554 553 5689999
Q ss_pred EeecCCCch
Q 012845 230 IGTDGAGST 238 (455)
Q Consensus 230 V~AdG~~S~ 238 (455)
|.|+|.++.
T Consensus 456 V~A~G~~s~ 464 (662)
T PRK01747 456 VLANGHDAA 464 (662)
T ss_pred EECCCCCcc
Confidence 999999985
No 80
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.25 E-value=5.7e-11 Score=107.63 Aligned_cols=135 Identities=23% Similarity=0.281 Sum_probs=78.3
Q ss_pred EEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhc---CCCcccccceEEee
Q 012845 47 LIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERS---QPPVDLWRKFIYCT 122 (455)
Q Consensus 47 vIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~---~~~~~~~~~~~~~~ 122 (455)
+||||||+||++|..|.++|++ |+||||++.+. |.|...... ..+......
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~G--------------------g~w~~~~~~~~~~~~~~~~~~----- 55 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPG--------------------GVWRRYYSYTRLHSPSFFSSD----- 55 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSST--------------------THHHCH-TTTT-BSSSCCTGG-----
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCC--------------------CeeEEeCCCCccccCcccccc-----
Confidence 6999999999999999999999 99999997762 111100000 000000000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
.+ +..+........... .......++.++.++|.+.+++.+. .++++++|+++..
T Consensus 56 --~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~yl~~~~~~~~l-------------------~i~~~~~V~~v~~ 110 (203)
T PF13738_consen 56 --FG--LPDFESFSFDDSPEW--RWPHDFPSGEEVLDYLQEYAERFGL-------------------EIRFNTRVESVRR 110 (203)
T ss_dssp --SS----CCCHSCHHHHHHH--HHSBSSEBHHHHHHHHHHHHHHTTG-------------------GEETS--EEEEEE
T ss_pred --cc--CCcccccccccCCCC--CCCcccCCHHHHHHHHHHHHhhcCc-------------------ccccCCEEEEEEE
Confidence 00 000000000000000 0012236788899999999999887 7999999999999
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
+++++.|++. ++. ++.+|.||.|+|..|.
T Consensus 111 ~~~~w~v~~~---~~~----~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 111 DGDGWTVTTR---DGR----TIRADRVVLATGHYSH 139 (203)
T ss_dssp ETTTEEEEET---TS-----EEEEEEEEE---SSCS
T ss_pred eccEEEEEEE---ecc----eeeeeeEEEeeeccCC
Confidence 9988988887 663 7889999999998664
No 81
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.23 E-value=2e-10 Score=117.84 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=89.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC-CCCCCCcccccC---h-hHHHHHHhhhchHHHHHh-cCCCccc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFSTHPQAHFIN---N-RYALVFRKLDGLAEEIER-SQPPVDL 114 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~-~~~~~~~~~~l~---~-~~~~~l~~~~gl~~~l~~-~~~~~~~ 114 (455)
+.++||+|||||+||+.+|+.+++.|.+|.|+|++. .+..-.|.-.+. . ...+-++.+.|+...+.+ .+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq--- 78 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ--- 78 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc---
Confidence 456999999999999999999999999999999874 222112211111 1 112222333222222211 1110
Q ss_pred ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (455)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~ 194 (455)
+.......|..+ ..+ ...+++..+.+.|.+.+.+.+. ..+ +.
T Consensus 79 ---~r~ln~skGpAV--------------~s~--RaQiDr~ly~kaL~e~L~~~~n------------------V~I-~q 120 (618)
T PRK05192 79 ---FRMLNTSKGPAV--------------RAL--RAQADRKLYRAAMREILENQPN------------------LDL-FQ 120 (618)
T ss_pred ---eeecccCCCCce--------------eCc--HHhcCHHHHHHHHHHHHHcCCC------------------cEE-EE
Confidence 000000011000 001 2367888899999998887632 265 56
Q ss_pred cEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 195 HECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 195 ~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
..|+++..+++.+. |.+. +|. .+.|+.||+|+|.++.
T Consensus 121 ~~V~~Li~e~grV~GV~t~---dG~----~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 121 GEVEDLIVENGRVVGVVTQ---DGL----EFRAKAVVLTTGTFLR 158 (618)
T ss_pred eEEEEEEecCCEEEEEEEC---CCC----EEECCEEEEeeCcchh
Confidence 77888877666655 4444 554 7899999999998763
No 82
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.23 E-value=2.4e-10 Score=114.50 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=56.2
Q ss_pred cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845 150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL 229 (455)
Q Consensus 150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v 229 (455)
..++...+.+.|.+.+.+.|+ +++++++|++++..++.+.|.+. ++ ++.+|.|
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~~~---~g-----~i~ad~v 196 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGG-------------------EIRLGAEVTALDEHANGVVVRTT---QG-----EYEARTL 196 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEecCCeEEEEEC---CC-----EEEeCEE
Confidence 456778899999999999886 89999999999887776655543 44 6899999
Q ss_pred EeecCCCch-hhhhcCCC
Q 012845 230 IGTDGAGST-VRKLVGID 246 (455)
Q Consensus 230 V~AdG~~S~-vr~~l~~~ 246 (455)
|.|+|.+|. +.+.++..
T Consensus 197 V~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 197 INCAGLMSDRLAKMAGLE 214 (393)
T ss_pred EECCCcchHHHHHHhCCC
Confidence 999999985 66666643
No 83
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.20 E-value=4.2e-10 Score=111.03 Aligned_cols=179 Identities=15% Similarity=0.212 Sum_probs=101.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCC---------cccccChhHHHH-HHhhhch--HHHH-H
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTHP---------QAHFINNRYALV-FRKLDGL--AEEI-E 106 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~~~~~---------~~~~l~~~~~~~-l~~~~gl--~~~l-~ 106 (455)
+.+||+|||||+.|+++|+.|++++ ++|+|+||.+.+.... .|.-.++....+ +... |- +.++ .
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~-g~~~~~~~~k 80 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVA-GNINEFAICK 80 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHH-HHHHHHHHHH
Confidence 5789999999999999999999998 9999999998763211 111112221100 0000 00 0111 1
Q ss_pred hcCCCcccccceEEeec------------------------CCCCcccccc-CCCccccccccCCccccccchhhHHHHH
Q 012845 107 RSQPPVDLWRKFIYCTS------------------------VTGPILGSVD-HMQPQDFEKVVSPVSVAHFSQYKLNKLL 161 (455)
Q Consensus 107 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L 161 (455)
+...+........+.++ .+...+..+. ............+ ....++-..+...|
T Consensus 81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p-~~giV~~~~~t~~l 159 (429)
T COG0579 81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVP-SGGIVDPGELTRAL 159 (429)
T ss_pred HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcC-CCceEcHHHHHHHH
Confidence 11111111111111111 0111111111 1110011111111 23446667788889
Q ss_pred HHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCch-h
Q 012845 162 LKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST-V 239 (455)
Q Consensus 162 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~-v 239 (455)
.+.+.+.|+ +++++++|++++..+++ ..+.+. +|+. +++|++||.|.|..|. +
T Consensus 160 ~e~a~~~g~-------------------~i~ln~eV~~i~~~~dg~~~~~~~---~g~~---~~~ak~Vin~AGl~Ad~l 214 (429)
T COG0579 160 AEEAQANGV-------------------ELRLNTEVTGIEKQSDGVFVLNTS---NGEE---TLEAKFVINAAGLYADPL 214 (429)
T ss_pred HHHHHHcCC-------------------EEEecCeeeEEEEeCCceEEEEec---CCcE---EEEeeEEEECCchhHHHH
Confidence 999999887 99999999999998885 334444 5541 2899999999999886 6
Q ss_pred hhhcCCCc
Q 012845 240 RKLVGIDL 247 (455)
Q Consensus 240 r~~l~~~~ 247 (455)
.+..|.+.
T Consensus 215 a~~~g~~~ 222 (429)
T COG0579 215 AQMAGIPE 222 (429)
T ss_pred HHHhCCCc
Confidence 66666554
No 84
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.19 E-value=2.9e-10 Score=115.98 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=54.7
Q ss_pred cccchhhHHHHHHHHHHh----cccccccCCCcccccccccccceEEeccEEEEeeec-CCceEEEEEeccCCcceeEEE
Q 012845 150 AHFSQYKLNKLLLKQLEK----LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCINVIASFLKEGKCTERNI 224 (455)
Q Consensus 150 ~~i~r~~l~~~L~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~~~~ 224 (455)
..++...|.+.|.+.+.+ .|.. ++|+++++|++++.. ++.+.|.+. +| ++
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~-----------------v~i~~~t~V~~I~~~~~~~~~V~T~---~G-----~i 260 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKK-----------------ISINLNTEVLNIERSNDSLYKIHTN---RG-----EI 260 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCC-----------------EEEEeCCEEEEEEecCCCeEEEEEC---CC-----EE
Confidence 456778899999999988 7731 289999999999987 444556554 55 68
Q ss_pred EeCEEEeecCCCch-hhhhcCC
Q 012845 225 QCNILIGTDGAGST-VRKLVGI 245 (455)
Q Consensus 225 ~~d~vV~AdG~~S~-vr~~l~~ 245 (455)
.+|.||.|.|.+|. +.+.+|.
T Consensus 261 ~A~~VVvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 261 RARFVVVSACGYSLLFAQKMGY 282 (497)
T ss_pred EeCEEEECcChhHHHHHHHhCC
Confidence 99999999999996 6666664
No 85
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.19 E-value=3.1e-09 Score=108.68 Aligned_cols=61 Identities=16% Similarity=0.075 Sum_probs=48.9
Q ss_pred cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845 150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL 229 (455)
Q Consensus 150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v 229 (455)
.+++-.++.+.|.+.+.+.|+ +|+.++.|++++. ++.+.|.+. +| ++.+|.|
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv-------------------~i~~~t~V~~i~~-~~~~~v~t~---~g-----~v~A~~V 229 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGV-------------------EIHENTPMTGLEE-GQPAVVRTP---DG-----QVTADKV 229 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCC-------------------EEECCCeEEEEee-CCceEEEeC---Cc-----EEECCEE
Confidence 456778899999999999887 9999999999975 444555543 45 6799999
Q ss_pred EeecCCCch
Q 012845 230 IGTDGAGST 238 (455)
Q Consensus 230 V~AdG~~S~ 238 (455)
|.|+|.++.
T Consensus 230 V~Atga~s~ 238 (460)
T TIGR03329 230 VLALNAWMA 238 (460)
T ss_pred EEccccccc
Confidence 999999864
No 86
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.17 E-value=2e-10 Score=114.67 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=95.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
++..+|+|||||||||++|..|.++|++|+++||.+.+. .-+...+..-.... .+.+.+.....+.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG---GlW~y~~~~~~~~s---s~Y~~l~tn~pKe-------- 69 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG---GLWKYTENVEVVHS---SVYKSLRTNLPKE-------- 69 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc---ceEeecCccccccc---chhhhhhccCChh--------
Confidence 457899999999999999999999999999999998763 11111111100000 1122222211110
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
.-...+...... ......++.++.++|.+.+.+.+.. ..|.++++|+.+
T Consensus 70 -------~~~~~dfpf~~~-------~~~~~p~~~e~~~YL~~yA~~F~l~-----------------~~i~f~~~v~~v 118 (448)
T KOG1399|consen 70 -------MMGYSDFPFPER-------DPRYFPSHREVLEYLRDYAKHFDLL-----------------KMINFNTEVVRV 118 (448)
T ss_pred -------hhcCCCCCCccc-------CcccCCCHHHHHHHHHHHHHhcChh-----------------hheEecccEEEE
Confidence 000000000000 0123346779999999999998863 389999999999
Q ss_pred eecC-CceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 201 SATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 201 ~~~~-~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
+..+ +.|.|... ++.+......+|.||.|+|-+.
T Consensus 119 ~~~~~gkW~V~~~---~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 119 DSIDKGKWRVTTK---DNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred eeccCCceeEEEe---cCCcceeEEEeeEEEEcccCcC
Confidence 9887 68988887 4432234678999999999884
No 87
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.15 E-value=3.1e-11 Score=121.97 Aligned_cols=152 Identities=21% Similarity=0.331 Sum_probs=38.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCccccc---Ch-hHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFI---NN-RYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l---~~-~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
|||||||||+|+++|+.+++.|.+|+|+||.+.+........+ .. .... ....|+..++.+........
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~--~~~~gi~~e~~~~~~~~~~~----- 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED--QVIGGIFREFLNRLRARGGY----- 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH--HHHHHHHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh--ccCCCHHHHHHHHHhhhccc-----
Confidence 8999999999999999999999999999999877432222111 11 1111 11136666665532211000
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
.. + ... .......+++..+...|.+.+.+.|+ +|++++.|+++
T Consensus 74 -------~~---~----~~~----~~~~~~~~~~~~~~~~l~~~l~e~gv-------------------~v~~~t~v~~v 116 (428)
T PF12831_consen 74 -------PQ---E----DRY----GWVSNVPFDPEVFKAVLDEMLAEAGV-------------------EVLLGTRVVDV 116 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------cc---c----ccc----cccccccccccccccccccccccccc-------------------ccccccccccc
Confidence 00 0 000 00001345666777777777777776 99999999999
Q ss_pred eecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCC
Q 012845 201 SATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI 245 (455)
Q Consensus 201 ~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~ 245 (455)
..+++.+. |.+... +| ..++.+|++|+|+|. ..+....|.
T Consensus 117 ~~~~~~i~~V~~~~~-~g---~~~i~A~~~IDaTG~-g~l~~~aG~ 157 (428)
T PF12831_consen 117 IRDGGRITGVIVETK-SG---RKEIRAKVFIDATGD-GDLAALAGA 157 (428)
T ss_dssp ----------------------------------------------
T ss_pred ccccccccccccccc-cc---ccccccccccccccc-ccccccccc
Confidence 98876654 544421 23 348999999999994 455555543
No 88
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.14 E-value=8.8e-09 Score=95.91 Aligned_cols=167 Identities=19% Similarity=0.145 Sum_probs=99.3
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChh-------------HHHHHHhhhchHHHHH
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNR-------------YALVFRKLDGLAEEIE 106 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~-------------~~~~l~~~~gl~~~l~ 106 (455)
|.+..||+|||||+-|+++|+.|+++|.+++++|+-+.+..++...+.+.- ..++++.| -.+.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W----~~~~ 79 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKW----RNLP 79 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHH----HhCh
Confidence 356799999999999999999999999999999999988766655544411 11111111 1111
Q ss_pred h-cCCCcccccceEEeecCC-----------------------CCccccccC--CCccccccccCCccccccchhhHHHH
Q 012845 107 R-SQPPVDLWRKFIYCTSVT-----------------------GPILGSVDH--MQPQDFEKVVSPVSVAHFSQYKLNKL 160 (455)
Q Consensus 107 ~-~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~i~r~~l~~~ 160 (455)
. .+.....-..+....... .+.-..++. .-+.+... ........+.-.+-.+.
T Consensus 80 ~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G-~~n~~gGvi~a~kslk~ 158 (399)
T KOG2820|consen 80 EESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQG-VVNESGGVINAAKSLKA 158 (399)
T ss_pred hhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhh-cccccccEeeHHHHHHH
Confidence 1 011000000000000000 000000110 00000000 01223455677788889
Q ss_pred HHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee---cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA---TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 161 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~---~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
|...+++.|+ .++.+.+|+.+.. .+..+.|+++ +|+ .+.++-+|.+.|++-
T Consensus 159 ~~~~~~~~G~-------------------i~~dg~~v~~~~~~~e~~~~v~V~Tt---~gs----~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 159 LQDKARELGV-------------------IFRDGEKVKFIKFVDEEGNHVSVQTT---DGS----IYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHcCe-------------------EEecCcceeeEeeccCCCceeEEEec---cCC----eeecceEEEEecHHH
Confidence 9999999997 9999999999873 3445667777 775 689999999999874
No 89
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.11 E-value=1.8e-10 Score=115.38 Aligned_cols=159 Identities=23% Similarity=0.306 Sum_probs=88.3
Q ss_pred EEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----cc-cccCh-h-HHHHHHhhhc---h-HHHHHhcCCCcccc
Q 012845 47 LIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QA-HFINN-R-YALVFRKLDG---L-AEEIERSQPPVDLW 115 (455)
Q Consensus 47 vIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~~-~~l~~-~-~~~~l~~~~g---l-~~~l~~~~~~~~~~ 115 (455)
+|||||+||+++|+.|+++|.+|+|+||++.+..+. .+ ..++. . .......++. + ...+...... ...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~-d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNK-DLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHH-HHH
Confidence 699999999999999999999999999998764321 01 01111 0 0111111100 0 0011110000 000
Q ss_pred cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (455)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~ 195 (455)
..+ ...|..+... ...... + ..-....+.+.|.+.+++.|+ ++++++
T Consensus 80 ~~~----~~~Gv~~~~~------~~g~~~-p---~~~~a~~v~~~L~~~l~~~gv-------------------~i~~~~ 126 (400)
T TIGR00275 80 DFF----ESLGLELKVE------EDGRVF-P---CSDSAADVLDALLNELKELGV-------------------EILTNS 126 (400)
T ss_pred HHH----HHcCCeeEEe------cCCEeE-C---CCCCHHHHHHHHHHHHHHCCC-------------------EEEeCC
Confidence 000 0001100000 000000 0 111346788889999988886 999999
Q ss_pred EEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc-----------hhhhhcCCCc
Q 012845 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS-----------TVRKLVGIDL 247 (455)
Q Consensus 196 ~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S-----------~vr~~l~~~~ 247 (455)
+|+++..+++.+.+.+ ++. ++.+|.||.|+|.+| .+.+++|...
T Consensus 127 ~V~~i~~~~~~~~v~~----~~~----~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i 181 (400)
T TIGR00275 127 KVKSIKKDDNGFGVET----SGG----EYEADKVILATGGLSYPQLGSTGDGYEIAESLGHTI 181 (400)
T ss_pred EEEEEEecCCeEEEEE----CCc----EEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCE
Confidence 9999987666555543 232 678999999999987 4556666543
No 90
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.11 E-value=2.3e-08 Score=105.55 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=54.4
Q ss_pred cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecC--CceE-EEEEeccCCcceeEEEEe
Q 012845 150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD--QCIN-VIASFLKEGKCTERNIQC 226 (455)
Q Consensus 150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~--~~~~-v~~~~~~~g~~~~~~~~~ 226 (455)
.+++-..|...|.+.+.+.|+ +++.+++|+++..++ +.+. |.+....++. ..++.+
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga-------------------~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~--~~~i~a 285 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGA-------------------AVLNYAEVVSLIKDESTGRIVGARVRDNLTGK--EFDVYA 285 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCc-------------------EEEeccEEEEEEEecCCCcEEEEEEEECCCCc--EEEEEe
Confidence 456778899999999999987 999999999998753 4433 4443111222 236899
Q ss_pred CEEEeecCCCch-hhhhcC
Q 012845 227 NILIGTDGAGST-VRKLVG 244 (455)
Q Consensus 227 d~vV~AdG~~S~-vr~~l~ 244 (455)
|.||.|+|.+|. +++.++
T Consensus 286 ~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 286 KVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred CEEEECCCHhHHHHHHhcc
Confidence 999999999986 666664
No 91
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.09 E-value=3.1e-09 Score=110.64 Aligned_cols=75 Identities=12% Similarity=0.216 Sum_probs=55.3
Q ss_pred cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCE
Q 012845 150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNI 228 (455)
Q Consensus 150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~ 228 (455)
..++...|...+...+.+.|+ +++.+++|+++..+++.+. |.+....+++ ..++.+|.
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~--~~~i~A~~ 202 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGA-------------------QILTYHEVTGLIREGDTVCGVRVRDHLTGE--TQEIHAPV 202 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCC-------------------EEEeccEEEEEEEcCCeEEEEEEEEcCCCc--EEEEECCE
Confidence 457778888888888889887 9999999999988766544 4444111222 23789999
Q ss_pred EEeecCCCch-hhhhcCC
Q 012845 229 LIGTDGAGST-VRKLVGI 245 (455)
Q Consensus 229 vV~AdG~~S~-vr~~l~~ 245 (455)
||.|.|.++. +.+..+.
T Consensus 203 VVnAaG~wa~~l~~~~g~ 220 (546)
T PRK11101 203 VVNAAGIWGQHIAEYADL 220 (546)
T ss_pred EEECCChhHHHHHHhcCC
Confidence 9999999986 5555553
No 92
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.09 E-value=2.5e-08 Score=99.76 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=49.4
Q ss_pred ccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCE
Q 012845 149 VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNI 228 (455)
Q Consensus 149 ~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~ 228 (455)
..+++-..+.+.|.+.+.+.|+ ..+..++.+..++.....+.|.+. +| ++.+|.
T Consensus 150 ~~~~~p~~~~~~l~~~~~~~G~------------------~~~~~~~~~~~~~~~~~~~~v~t~---~g-----~i~a~~ 203 (387)
T COG0665 150 GGHLDPRLLTRALAAAAEELGV------------------VIIEGGTPVTSLERDGRVVGVETD---GG-----TIEADK 203 (387)
T ss_pred CCcCCHHHHHHHHHHHHHhcCC------------------eEEEccceEEEEEecCcEEEEEeC---Cc-----cEEeCE
Confidence 3456667899999999999985 367779999998875233445544 55 589999
Q ss_pred EEeecCCCchh
Q 012845 229 LIGTDGAGSTV 239 (455)
Q Consensus 229 vV~AdG~~S~v 239 (455)
||.|.|.++..
T Consensus 204 vv~a~G~~~~~ 214 (387)
T COG0665 204 VVLAAGAWAGE 214 (387)
T ss_pred EEEcCchHHHH
Confidence 99999999863
No 93
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.08 E-value=8.9e-10 Score=113.41 Aligned_cols=144 Identities=22% Similarity=0.301 Sum_probs=85.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCC-cccccceEEee
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP-VDLWRKFIYCT 122 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~-~~~~~~~~~~~ 122 (455)
.+|+|||||++||++|..|.+.|++|++|||++..+ |+|..-...... ...|.....
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG--------------------G~W~~~~~~~~g~~~~y~sl~~-- 59 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG--------------------GLWRYTENPEDGRSSVYDSLHT-- 59 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS--------------------GGGCHSTTCCCSEGGGSTT-B---
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC--------------------ccCeeCCcCCCCccccccceEE--
Confidence 579999999999999999999999999999998762 222100000000 001111100
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
+.+.......+...+.+ .....++.++.++|.+.++..+.. ..|+++++|++++.
T Consensus 60 n~sk~~~~fsdfp~p~~--------~p~f~~~~~v~~Yl~~Ya~~f~L~-----------------~~I~fnt~V~~v~~ 114 (531)
T PF00743_consen 60 NTSKEMMAFSDFPFPED--------YPDFPSHSEVLEYLESYAEHFGLR-----------------KHIRFNTEVVSVER 114 (531)
T ss_dssp SS-GGGSCCTTS-HCCC--------CSSSEBHHHHHHHHHHHHHHTTGG-----------------GGEETSEEEEEEEE
T ss_pred eeCchHhcCCCcCCCCC--------CCCCCCHHHHHHHHHHHHhhhCCc-----------------ceEEEccEEeEeee
Confidence 00011111111110111 112457899999999999998762 37999999999987
Q ss_pred cC-----CceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 203 TD-----QCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 203 ~~-----~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
.+ +.|.|++. .+|+ .++..+|.||.|+|.++.
T Consensus 115 ~~d~~~~~~W~V~~~--~~g~--~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 115 DPDFSATGKWEVTTE--NDGK--EETEEFDAVVVATGHFSK 151 (531)
T ss_dssp ETTTT-ETEEEEEET--TTTE--EEEEEECEEEEEE-SSSC
T ss_pred ccccCCCceEEEEee--cCCe--EEEEEeCeEEEcCCCcCC
Confidence 54 35767654 2332 345578999999999873
No 94
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.07 E-value=2.4e-09 Score=104.42 Aligned_cols=144 Identities=17% Similarity=0.272 Sum_probs=84.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCCcccccChhH----HHHHHhhhchHHHHHhcCCCcccccceE
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVL-EKNKAFSTHPQAHFINNRY----ALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~-Er~~~~~~~~~~~~l~~~~----~~~l~~~~gl~~~l~~~~~~~~~~~~~~ 119 (455)
||+|||||.||+.||+++|+.|.+|+|| ++.+....-.|.-.+...+ .+-++.+.|+.-.+.+... ..+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~-----i~~~ 75 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETG-----IHFR 75 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHE-----EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhh-----hhhh
Confidence 7999999999999999999999999999 5555544444443333221 1222333233222211100 0111
Q ss_pred EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (455)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 199 (455)
......|... ......++|..+.+.+.+.+++.+. .+| ...+|++
T Consensus 76 ~lN~skGpav----------------~a~r~qvDr~~y~~~~~~~l~~~~n------------------l~i-~~~~V~~ 120 (392)
T PF01134_consen 76 MLNRSKGPAV----------------HALRAQVDRDKYSRAMREKLESHPN------------------LTI-IQGEVTD 120 (392)
T ss_dssp EESTTS-GGC----------------TEEEEEE-HHHHHHHHHHHHHTSTT------------------EEE-EES-EEE
T ss_pred cccccCCCCc----------------cchHhhccHHHHHHHHHHHHhcCCC------------------eEE-EEcccce
Confidence 1111111111 1112468999999999999988653 466 4679999
Q ss_pred eeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCC
Q 012845 200 VSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGA 235 (455)
Q Consensus 200 i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~ 235 (455)
+..+++.+. |.+. +|. .+.+|.||.|+|.
T Consensus 121 l~~e~~~v~GV~~~---~g~----~~~a~~vVlaTGt 150 (392)
T PF01134_consen 121 LIVENGKVKGVVTK---DGE----EIEADAVVLATGT 150 (392)
T ss_dssp EEECTTEEEEEEET---TSE----EEEECEEEE-TTT
T ss_pred EEecCCeEEEEEeC---CCC----EEecCEEEEeccc
Confidence 998887766 4443 664 8899999999998
No 95
>PRK07233 hypothetical protein; Provisional
Probab=99.07 E-value=3.9e-08 Score=99.88 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=33.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~ 80 (455)
+|+|||||++||++|+.|+++|++|+|+|+++.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 699999999999999999999999999999987753
No 96
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.07 E-value=3.1e-09 Score=108.63 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=57.2
Q ss_pred ccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecC-CceEEEEEeccCCcceeEEEEeC
Q 012845 149 VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCN 227 (455)
Q Consensus 149 ~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~~~d 227 (455)
...++...+...|.+.+.+.|+ +|+++++|++++.++ +.+.+++...++|. ..++++|
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~--~~~i~A~ 230 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQNGT-------------------TIRFGHEVRNLKRQSDGSWTVTVKNTRTGG--KRTLNTR 230 (483)
T ss_pred CEEECHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEcCCCeEEEEEeeccCCc--eEEEECC
Confidence 3567888999999999998887 999999999998754 35666543112232 2268999
Q ss_pred EEEeecCCCch-hhhhcCCC
Q 012845 228 ILIGTDGAGST-VRKLVGID 246 (455)
Q Consensus 228 ~vV~AdG~~S~-vr~~l~~~ 246 (455)
.||.|.|.+|. +++.+|..
T Consensus 231 ~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 231 FVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred EEEECCCcchHHHHHHcCCC
Confidence 99888888875 77777755
No 97
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.06 E-value=6.8e-08 Score=97.53 Aligned_cols=183 Identities=13% Similarity=0.088 Sum_probs=109.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCcccccChhHHHHHHhhh-c-hHHHHHhc-----CCCc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLD-G-LAEEIERS-----QPPV 112 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~-~~~~~~~l~~~~~~~l~~~~-g-l~~~l~~~-----~~~~ 112 (455)
+..+||+|||||+.|+-+|.-++.+|++|.|+|+++... ..++...|--.+++.|.+.. . +.+.+.+. ..|.
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 478999999999999999999999999999999998763 33444555556667776652 2 22333221 1111
Q ss_pred ccccceEEeecCC---CCccc-----------c-------ccCCC-------cccccccc----CCccccccchhhHHHH
Q 012845 113 DLWRKFIYCTSVT---GPILG-----------S-------VDHMQ-------PQDFEKVV----SPVSVAHFSQYKLNKL 160 (455)
Q Consensus 113 ~~~~~~~~~~~~~---~~~~~-----------~-------~~~~~-------~~~~~~~~----~~~~~~~i~r~~l~~~ 160 (455)
-.+.........+ +.... . ..... .+.+.... .-+.-..++-..|.-.
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~ 169 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA 169 (532)
T ss_pred ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence 1111100100001 00000 0 00000 00000000 0011233555677777
Q ss_pred HHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch-h
Q 012845 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-V 239 (455)
Q Consensus 161 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~-v 239 (455)
....+.+.|. ++...++|+++..+++-+-|.+... .++.+..+.++.||-|+|+++- +
T Consensus 170 ~a~~A~~~Ga-------------------~il~~~~v~~~~re~~v~gV~~~D~--~tg~~~~ira~~VVNAaGpW~d~i 228 (532)
T COG0578 170 NARDAAEHGA-------------------EILTYTRVESLRREGGVWGVEVEDR--ETGETYEIRARAVVNAAGPWVDEI 228 (532)
T ss_pred HHHHHHhccc-------------------chhhcceeeeeeecCCEEEEEEEec--CCCcEEEEEcCEEEECCCccHHHH
Confidence 8888888887 8999999999999887444666633 3344668999999999999997 5
Q ss_pred hhhcC
Q 012845 240 RKLVG 244 (455)
Q Consensus 240 r~~l~ 244 (455)
++..+
T Consensus 229 ~~~~~ 233 (532)
T COG0578 229 LEMAG 233 (532)
T ss_pred HHhhc
Confidence 66554
No 98
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.05 E-value=6.6e-09 Score=106.36 Aligned_cols=76 Identities=25% Similarity=0.400 Sum_probs=55.3
Q ss_pred cccchhhHHHHHHHHHHhcc-cccccCCCcccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeC
Q 012845 150 AHFSQYKLNKLLLKQLEKLN-FKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCN 227 (455)
Q Consensus 150 ~~i~r~~l~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d 227 (455)
..++...+.+.|.+.+++.| + +|+++++|++++..+++ +.+++....+|. ..++.+|
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv-------------------~i~~~teV~~I~~~~dg~~~v~~~~~~~G~--~~~i~A~ 236 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNF-------------------ELQLGHEVRDIKRNDDGSWTVTVKDLKTGE--KRTVRAK 236 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCe-------------------EEEeCCEEEEEEECCCCCEEEEEEEcCCCc--eEEEEcC
Confidence 45777889999999998876 5 89999999999875554 666554111232 1268999
Q ss_pred EEEeecCCCch-hhhhcCCC
Q 012845 228 ILIGTDGAGST-VRKLVGID 246 (455)
Q Consensus 228 ~vV~AdG~~S~-vr~~l~~~ 246 (455)
+||.|.|.+|. +++.+|..
T Consensus 237 ~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 237 FVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred EEEECCCcchHHHHHHcCCC
Confidence 99888887765 77777654
No 99
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.04 E-value=4.6e-09 Score=94.94 Aligned_cols=35 Identities=34% Similarity=0.537 Sum_probs=32.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.+|+|||+||+|+++|+.|+..|++|+||||..-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCc
Confidence 36999999999999999999999999999998654
No 100
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.04 E-value=1.8e-09 Score=103.84 Aligned_cols=112 Identities=24% Similarity=0.386 Sum_probs=78.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
+||+|||||++|+++|..|++.|++|+|||+.+. . +..... ..+..+|++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-g----g~~~~~---~~~~~~~~~---------------------- 50 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-G----GQLTTT---TEVENYPGF---------------------- 50 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-C----cceeec---ccccccCCC----------------------
Confidence 6899999999999999999999999999998752 1 100000 000000000
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~ 203 (455)
...+....+...+.+.+.+.|+ +++. .+|++++..
T Consensus 51 -------------------------~~~~~~~~~~~~l~~~~~~~gv-------------------~~~~-~~v~~v~~~ 85 (300)
T TIGR01292 51 -------------------------PEGISGPELMEKMKEQAVKFGA-------------------EIIY-EEVIKVDLS 85 (300)
T ss_pred -------------------------CCCCChHHHHHHHHHHHHHcCC-------------------eEEE-EEEEEEEec
Confidence 0012234677788888888886 7777 899999887
Q ss_pred CCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
++.+.+... ++. ++.+|.||.|+|...
T Consensus 86 ~~~~~v~~~---~~~----~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 86 DRPFKVKTG---DGK----EYTAKAVIIATGASA 112 (300)
T ss_pred CCeeEEEeC---CCC----EEEeCEEEECCCCCc
Confidence 776766654 554 789999999999754
No 101
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.02 E-value=8.9e-09 Score=106.34 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=35.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
..++||||||+|++|+++|+.+++.|.+|+|+||.+...
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~G 97 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG 97 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 357899999999999999999999999999999987653
No 102
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.02 E-value=4.7e-09 Score=106.16 Aligned_cols=138 Identities=19% Similarity=0.257 Sum_probs=83.4
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccce
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~ 118 (455)
.+.++||+|||||++|+++|++|.++|.. ++||||+.... ..+..+ .+|++.-. .+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G---g~W~~~--------ry~~l~~~-----~p------- 61 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG---GTWRYN--------RYPGLRLD-----SP------- 61 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC---Ccchhc--------cCCceEEC-----Cc-------
Confidence 36789999999999999999999999999 99999998762 111111 11222100 00
Q ss_pred EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (455)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~ 198 (455)
.....++..+-. . . ...-....+..++.+.+++.+.. -.+.++++|.
T Consensus 62 --------~~~~~~~~~p~~-~-----~--~~~~~~~~~~~y~~~~~~~y~~~-----------------~~i~~~~~v~ 108 (443)
T COG2072 62 --------KWLLGFPFLPFR-W-----D--EAFAPFAEIKDYIKDYLEKYGLR-----------------FQIRFNTRVE 108 (443)
T ss_pred --------hheeccCCCccC-C-----c--ccCCCcccHHHHHHHHHHHcCce-----------------eEEEcccceE
Confidence 000000000000 0 0 00112334677777888877752 2666777766
Q ss_pred Eeeec--CCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 199 SVSAT--DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 199 ~i~~~--~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
.+..+ +..+.|++. ++... ++++|.||.|+|..|.
T Consensus 109 ~~~~~~~~~~w~V~~~---~~~~~--~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 109 VADWDEDTKRWTVTTS---DGGTG--ELTADFVVVATGHLSE 145 (443)
T ss_pred EEEecCCCCeEEEEEc---CCCee--eEecCEEEEeecCCCC
Confidence 66554 446777777 55422 1679999999998763
No 103
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.01 E-value=1e-08 Score=104.34 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=56.0
Q ss_pred ccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEEEEeeec-CCceEEEEEeccCCcceeEEEEe
Q 012845 149 VAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCINVIASFLKEGKCTERNIQC 226 (455)
Q Consensus 149 ~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~~~~~~ 226 (455)
...++...|.+.|.+.+.+. |+ +++++++|++++.. ++.|.+.+....++. ..++++
T Consensus 178 ~~~VD~~~L~~aL~~~l~~~~Gv-------------------~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~--~~~i~A 236 (497)
T PRK13339 178 GTDVNFGALTRKLAKHLESHPNA-------------------QVKYNHEVVDLERLSDGGWEVTVKDRNTGE--KREQVA 236 (497)
T ss_pred ceecCHHHHHHHHHHHHHhCCCc-------------------EEEeCCEEEEEEECCCCCEEEEEEecCCCc--eEEEEc
Confidence 35678888999998888654 55 99999999999877 666766542111231 125799
Q ss_pred CEEEeecCCCch-hhhhcCCC
Q 012845 227 NILIGTDGAGST-VRKLVGID 246 (455)
Q Consensus 227 d~vV~AdG~~S~-vr~~l~~~ 246 (455)
|+||.|.|.+|. +.+.+|..
T Consensus 237 d~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 237 DYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred CEEEECCCcchHHHHHHcCCC
Confidence 999999999985 67777654
No 104
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.00 E-value=7.2e-08 Score=98.46 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=32.5
Q ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS 79 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~~ 79 (455)
+|+|||||+|||++|+.|+++| ++|+|||+++.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 6999999999999999999988 8999999988764
No 105
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.99 E-value=2.7e-09 Score=109.38 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=34.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+.++||||||+|++|+++|+.|++.|.+|+|+||.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5678999999999999999999999999999999864
No 106
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.97 E-value=5.1e-09 Score=103.90 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=32.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+||+|||||++|+++|+.|+++|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999864
No 107
>PLN02661 Putative thiazole synthesis
Probab=98.96 E-value=1.6e-08 Score=97.29 Aligned_cols=37 Identities=35% Similarity=0.489 Sum_probs=33.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~ 78 (455)
.++||+|||||++|+++|+.|++. |++|+|+||+..+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 368999999999999999999986 8999999998765
No 108
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.96 E-value=7.4e-08 Score=98.76 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=31.7
Q ss_pred CEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFS 79 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~------g~~V~l~Er~~~~~ 79 (455)
+|+|||||++||++|+.|++. |++|+|+|+++...
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 699999999999999999986 48999999998764
No 109
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.8e-09 Score=100.19 Aligned_cols=114 Identities=25% Similarity=0.377 Sum_probs=76.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
+.+||+|||||||||++|+.++++|++ ++|+|+... . + .+ ..... +..|
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-g--g---~~------------~~~~~-------veny----- 51 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-G--G---QL------------TKTTD-------VENY----- 51 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-C--C---cc------------cccee-------ecCC-----
Confidence 579999999999999999999999999 667776532 1 0 00 00000 0000
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
|-....+.-..|.+-+.+.+...++ ++.. ..|..+
T Consensus 52 -------------------------pg~~~~~~g~~L~~~~~~~a~~~~~-------------------~~~~-~~v~~v 86 (305)
T COG0492 52 -------------------------PGFPGGILGPELMEQMKEQAEKFGV-------------------EIVE-DEVEKV 86 (305)
T ss_pred -------------------------CCCccCCchHHHHHHHHHHHhhcCe-------------------EEEE-EEEEEE
Confidence 0001123456788888888888886 5555 778888
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
+..++...|.+. ++ +++++.||.|+|....
T Consensus 87 ~~~~~~F~v~t~---~~-----~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 87 ELEGGPFKVKTD---KG-----TYEAKAVIIATGAGAR 116 (305)
T ss_pred eecCceEEEEEC---CC-----eEEEeEEEECcCCccc
Confidence 776655566655 55 5899999999998663
No 110
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.95 E-value=6.4e-09 Score=107.82 Aligned_cols=114 Identities=21% Similarity=0.355 Sum_probs=82.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
...+||+||||||||+++|..|+++|++|+|+|+. . .| .+. ... ++. .+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~----GG-~~~-------~~~-~~~--------------~~-- 257 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--F----GG-QVL-------DTM-GIE--------------NF-- 257 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C----CC-eee-------ccC-ccc--------------cc--
Confidence 34699999999999999999999999999999753 1 11 110 000 000 00
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
. . .......++.+.|.+.+.+.|+ .++.+++|+++
T Consensus 258 ---------~---------------~--~~~~~~~~l~~~l~~~~~~~gv-------------------~i~~~~~V~~I 292 (517)
T PRK15317 258 ---------I---------------S--VPETEGPKLAAALEEHVKEYDV-------------------DIMNLQRASKL 292 (517)
T ss_pred ---------C---------------C--CCCCCHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEE
Confidence 0 0 0012345788889999999887 88999999999
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
...++.+.+.+. ++. .+.+|.||.|+|...
T Consensus 293 ~~~~~~~~V~~~---~g~----~i~a~~vViAtG~~~ 322 (517)
T PRK15317 293 EPAAGLIEVELA---NGA----VLKAKTVILATGARW 322 (517)
T ss_pred EecCCeEEEEEC---CCC----EEEcCEEEECCCCCc
Confidence 887666667655 554 689999999999865
No 111
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.95 E-value=1.9e-08 Score=101.19 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=52.5
Q ss_pred ccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeC
Q 012845 149 VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCN 227 (455)
Q Consensus 149 ~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d 227 (455)
..+++...+.+.|...+.++|+ .|..++.|+++....+. +-|.+. -| .+++.
T Consensus 181 DG~~DP~~lC~ala~~A~~~GA-------------------~viE~cpV~~i~~~~~~~~gVeT~---~G-----~iet~ 233 (856)
T KOG2844|consen 181 DGVMDPAGLCQALARAASALGA-------------------LVIENCPVTGLHVETDKFGGVETP---HG-----SIETE 233 (856)
T ss_pred CcccCHHHHHHHHHHHHHhcCc-------------------EEEecCCcceEEeecCCccceecc---Cc-----ceecc
Confidence 4668889999999999999998 99999999999765443 346655 56 68999
Q ss_pred EEEeecCCCch
Q 012845 228 ILIGTDGAGST 238 (455)
Q Consensus 228 ~vV~AdG~~S~ 238 (455)
.+|.|.|.+..
T Consensus 234 ~~VNaaGvWAr 244 (856)
T KOG2844|consen 234 CVVNAAGVWAR 244 (856)
T ss_pred eEEechhHHHH
Confidence 99999999975
No 112
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.94 E-value=4.4e-07 Score=93.07 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=33.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFS 79 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~~ 79 (455)
.||+|||||++||++|+.|+++ |++|+|+|+++.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 6899999999999999999999 99999999998664
No 113
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.94 E-value=4.1e-08 Score=103.29 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=35.5
Q ss_pred cCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
+...++||||||||+|||++|+.+++.|.+|+|+||....
T Consensus 8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~ 47 (598)
T PRK09078 8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT 47 (598)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 3345789999999999999999999999999999998643
No 114
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.93 E-value=4.3e-08 Score=102.01 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=35.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..++||+|||+|+|||++|+.+++.|.+|+|+||....
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 45789999999999999999999999999999998764
No 115
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=3.5e-08 Score=104.35 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=34.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.++||+|||||.|||++|+.+++.|.+|+|+||...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4689999999999999999999999999999987654
No 116
>PRK07121 hypothetical protein; Validated
Probab=98.92 E-value=1.2e-08 Score=105.35 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=35.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+||||||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 35789999999999999999999999999999998764
No 117
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.91 E-value=3.7e-08 Score=103.38 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeec
Q 012845 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD 233 (455)
Q Consensus 155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~Ad 233 (455)
..+...|.+.+.+.|+ ++++++.++++..+++.+. +......+|. ...+.++.||.|+
T Consensus 129 ~~i~~~L~~~~~~~gv-------------------~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~--~~~i~Ak~VVlAt 187 (566)
T TIGR01812 129 HALLHTLYEQCLKLGV-------------------SFFNEYFALDLIHDDGRVRGVVAYDLKTGE--IVFFRAKAVVLAT 187 (566)
T ss_pred HHHHHHHHHHHHHcCC-------------------EEEeccEEEEEEEeCCEEEEEEEEECCCCc--EEEEECCeEEECC
Confidence 3577888888888776 9999999999987665543 3332112332 3468999999999
Q ss_pred CCCchhhh
Q 012845 234 GAGSTVRK 241 (455)
Q Consensus 234 G~~S~vr~ 241 (455)
|..+.+..
T Consensus 188 GG~~~~~~ 195 (566)
T TIGR01812 188 GGYGRIYK 195 (566)
T ss_pred CcccCCCC
Confidence 99886543
No 118
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.91 E-value=1.9e-08 Score=101.65 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEe
Q 012845 153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIG 231 (455)
Q Consensus 153 ~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~ 231 (455)
.-..+...|.+.+++.|+ +|+++++++++..+++.+. +......+| ....+.++.||.
T Consensus 139 ~g~~~~~~l~~~~~~~gv-------------------~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g--~~~~i~A~aVIl 197 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGV-------------------DIRFNTRVTDLITEDGRVTGVVAENPADG--EFVRIKAKAVIL 197 (417)
T ss_dssp HHHHHHHHHHHHHHHTTE-------------------EEEESEEEEEEEEETTEEEEEEEEETTTC--EEEEEEESEEEE
T ss_pred cHHHHHHHHHHHHhhcCe-------------------eeeccceeeeEEEeCCceeEEEEEECCCC--eEEEEeeeEEEe
Confidence 456788999999999987 9999999999999877655 444322344 345789999999
Q ss_pred ecCCCch
Q 012845 232 TDGAGST 238 (455)
Q Consensus 232 AdG~~S~ 238 (455)
|+|..+.
T Consensus 198 AtGG~~~ 204 (417)
T PF00890_consen 198 ATGGFGG 204 (417)
T ss_dssp ----BGG
T ss_pred ccCcccc
Confidence 9999985
No 119
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.91 E-value=3.6e-08 Score=101.47 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHh-cccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEee
Q 012845 155 YKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT 232 (455)
Q Consensus 155 ~~l~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~A 232 (455)
..+.+.|.+.+.+ .++ +++.++.|+++..+++.+. +.+. +. +....+.++.||.|
T Consensus 128 ~~l~~~L~~~~~~~~gi-------------------~i~~~~~v~~l~~~~g~v~Gv~~~---~~-~~~~~i~A~~VVlA 184 (488)
T TIGR00551 128 REVITTLVKKALNHPNI-------------------RIIEGENALDLLIETGRVVGVWVW---NR-ETVETCHADAVVLA 184 (488)
T ss_pred HHHHHHHHHHHHhcCCc-------------------EEEECeEeeeeeccCCEEEEEEEE---EC-CcEEEEEcCEEEEC
Confidence 5688888888887 465 9999999999987655544 4443 21 11236899999999
Q ss_pred cCCCchhhh
Q 012845 233 DGAGSTVRK 241 (455)
Q Consensus 233 dG~~S~vr~ 241 (455)
+|.+|.+..
T Consensus 185 tGG~~~~~~ 193 (488)
T TIGR00551 185 TGGAGKLYQ 193 (488)
T ss_pred CCcccCCCC
Confidence 999997543
No 120
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.90 E-value=7.9e-08 Score=101.43 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=34.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..+||||||+|+|||++|+.+++.|.+|+|+||....
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~ 85 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 85 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 4689999999999999999999999999999998654
No 121
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.90 E-value=3.2e-08 Score=100.73 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=32.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF 78 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~ 78 (455)
||||||||++|+++|+.++++| .+|+|+||.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 8999999999999999999999 999999998765
No 122
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.89 E-value=1.8e-08 Score=105.23 Aligned_cols=113 Identities=18% Similarity=0.326 Sum_probs=75.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
...+||+||||||||+++|+.|+++|++|+|||+.. . + | .+.. .. .+ ..+
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~---G-G-~~~~-------~~-~i-----------~~~----- 51 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-F---G-G-QITI-------TS-EV-----------VNY----- 51 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-C---C-c-eEEe-------cc-cc-----------ccC-----
Confidence 346999999999999999999999999999999853 2 1 1 1100 00 00 000
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
.+ ...+....+.+.+.+.+.+.|+ .+ .+++|+.+
T Consensus 52 ----pg----------------------~~~~~~~~l~~~l~~~~~~~gv-------------------~~-~~~~V~~i 85 (555)
T TIGR03143 52 ----PG----------------------ILNTTGPELMQEMRQQAQDFGV-------------------KF-LQAEVLDV 85 (555)
T ss_pred ----CC----------------------CcCCCHHHHHHHHHHHHHHcCC-------------------EE-eccEEEEE
Confidence 00 0112345677778888888776 65 47788888
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
+.+++...+... ++ .+.++.||.|+|...
T Consensus 86 ~~~~~~~~V~~~---~g-----~~~a~~lVlATGa~p 114 (555)
T TIGR03143 86 DFDGDIKTIKTA---RG-----DYKTLAVLIATGASP 114 (555)
T ss_pred EecCCEEEEEec---CC-----EEEEeEEEECCCCcc
Confidence 876554555543 44 578999999999865
No 123
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.89 E-value=4.5e-08 Score=103.09 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=34.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~ 78 (455)
..++||+|||||+|||++|+.+++. |.+|+|+||....
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 3468999999999999999999998 9999999998754
No 124
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.89 E-value=1.4e-08 Score=105.14 Aligned_cols=114 Identities=18% Similarity=0.357 Sum_probs=80.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
...+||+||||||||+++|+.|++.|++|+|+|.. . .|. +. ... ++ ..+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~----GG~-~~-------~~~-~~--------------~~~-- 258 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--I----GGQ-VK-------DTV-GI--------------ENL-- 258 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C----CCc-cc-------cCc-Cc--------------ccc--
Confidence 45699999999999999999999999999999742 1 110 00 000 00 000
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
. . .......++.+.+.+.+.+.|+ .++.+++|+++
T Consensus 259 --------~----------------~--~~~~~~~~l~~~l~~~l~~~gv-------------------~i~~~~~V~~I 293 (515)
T TIGR03140 259 --------I----------------S--VPYTTGSQLAANLEEHIKQYPI-------------------DLMENQRAKKI 293 (515)
T ss_pred --------c----------------c--cCCCCHHHHHHHHHHHHHHhCC-------------------eEEcCCEEEEE
Confidence 0 0 0012345677888888888886 89999999999
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
+.+++.+.+.+. +|. .+.+|.||.|+|...
T Consensus 294 ~~~~~~~~v~~~---~g~----~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 294 ETEDGLIVVTLE---SGE----VLKAKSVIVATGARW 323 (515)
T ss_pred EecCCeEEEEEC---CCC----EEEeCEEEECCCCCc
Confidence 877666666655 554 789999999999864
No 125
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=9.6e-08 Score=100.37 Aligned_cols=37 Identities=35% Similarity=0.496 Sum_probs=34.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
...+||||||+|+|||++|+.+++.|.+|+|+||...
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 4568999999999999999999999999999999754
No 126
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.88 E-value=8.2e-08 Score=101.25 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=34.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..++||+|||||.|||++|+.+++.|.+|+|+||....
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~ 64 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT 64 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence 34689999999999999999999999999999998754
No 127
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=5.6e-08 Score=102.02 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=33.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~ 78 (455)
..+||+|||||+||+++|+.+++. |.+|+|+||....
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~ 40 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI 40 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence 468999999999999999999987 4899999998654
No 128
>PLN02815 L-aspartate oxidase
Probab=98.86 E-value=9.2e-08 Score=100.05 Aligned_cols=57 Identities=18% Similarity=0.340 Sum_probs=43.0
Q ss_pred cCCCCCcccccccCCCcccccCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 19 FPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.-+|....+.++.+...... ..++||||||+|.|||++|+.+++.| +|+|+||.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~--~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 7 TRKPIGAERASSASRLDDES--TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred cccCcccccCCcccccccCc--ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 34455544444444444433 45689999999999999999999999 99999998764
No 129
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=9.8e-08 Score=99.86 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=34.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+||||||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~ 40 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPT 40 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 45789999999999999999999999999999998643
No 130
>PLN02612 phytoene desaturase
Probab=98.86 E-value=2.3e-06 Score=89.54 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=48.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCc------c----------cccChhHHHHHHhhhchHHH
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ------A----------HFINNRYALVFRKLDGLAEE 104 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~------~----------~~l~~~~~~~l~~~~gl~~~ 104 (455)
....+|+|||||++||++|+.|+++|++|+|+|+++....+.. + ....++..++++++ |+.+.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~el-G~~~~ 169 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGEL-GINDR 169 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHh-CCccc
Confidence 3467999999999999999999999999999999875432211 1 01235677888888 88654
Q ss_pred H
Q 012845 105 I 105 (455)
Q Consensus 105 l 105 (455)
+
T Consensus 170 ~ 170 (567)
T PLN02612 170 L 170 (567)
T ss_pred c
Confidence 3
No 131
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.85 E-value=8.8e-08 Score=96.95 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=32.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..+||||||+|.|||++|+.++ .|.+|+|+||.+..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence 5689999999999999999985 69999999998764
No 132
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.84 E-value=1.1e-07 Score=99.78 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=33.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~ 78 (455)
+..+||+|||||+|||++|+.+++. |.+|+|+||....
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 3568999999999999999999987 4899999998654
No 133
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=9.8e-08 Score=100.91 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=34.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+||||||+|+||+++|+.+++.|.+|+|+||.+..
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 45789999999999999999999999999999998654
No 134
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=1.6e-07 Score=98.49 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=34.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.++||||||+|.|||++|+.+++.|.+|+|+||....
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~ 42 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT 42 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4689999999999999999999999999999998654
No 135
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.83 E-value=5.8e-08 Score=99.82 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=85.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCccccc---Chh-HHHHHHhhhchHHHHHhcCCCcccccce
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFI---NNR-YALVFRKLDGLAEEIERSQPPVDLWRKF 118 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~-~~~~~~~l---~~~-~~~~l~~~~gl~~~l~~~~~~~~~~~~~ 118 (455)
+||+|||||+||+.+|..+++.|.+|+|+|++.... .-.|...+ ... ..+-++.+.|....+.+.... .+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i-----~~ 75 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGL-----QF 75 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhce-----eh
Confidence 699999999999999999999999999999974321 11111111 110 112222222222222111100 00
Q ss_pred EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (455)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~ 198 (455)
.......+..+ ......+++..+...|.+.+++.+. ..++ ...|+
T Consensus 76 r~ln~skgpAV----------------~~~RaQVDr~~y~~~L~e~Le~~pg------------------V~Il-e~~Vv 120 (617)
T TIGR00136 76 RVLNSSKGPAV----------------RATRAQIDKVLYRKAMRNALENQPN------------------LSLF-QGEVE 120 (617)
T ss_pred eecccCCCCcc----------------cccHHhCCHHHHHHHHHHHHHcCCC------------------cEEE-EeEEE
Confidence 00000000000 0012468899999999999988743 3554 45777
Q ss_pred Eeeec-CCceE-EEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 199 SVSAT-DQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 199 ~i~~~-~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
++..+ ++.+. |.+. +|. .+.||.||.|+|.+..
T Consensus 121 ~li~e~~g~V~GV~t~---~G~----~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 121 DLILEDNDEIKGVVTQ---DGL----KFRAKAVIITTGTFLR 155 (617)
T ss_pred EEEEecCCcEEEEEEC---CCC----EEECCEEEEccCcccC
Confidence 77654 44433 5544 554 7899999999999963
No 136
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=9.6e-08 Score=100.33 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=35.8
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCCC
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAFS 79 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g---~~V~l~Er~~~~~ 79 (455)
+..++||+|||||+|||++|+.+++.| .+|+|+||.....
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~ 44 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR 44 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence 456789999999999999999999998 8999999987643
No 137
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=1.8e-07 Score=98.34 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=33.6
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
|..++||+|||||+||+++|+.+++. .+|+|+||....
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~ 39 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPT 39 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 34578999999999999999999986 999999998643
No 138
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.82 E-value=1.4e-07 Score=100.13 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=35.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+||||||||.|||++|+.+++.|.+|+|+||.+..
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 46789999999999999999999999999999998764
No 139
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.81 E-value=1.3e-07 Score=96.79 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=32.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+||+|||||+||+++|+.+++.|.+|+|+||.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999854
No 140
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=2.1e-07 Score=97.75 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=33.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.+.||||||+|+|||++|+.+++.|.+|+|+||.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4569999999999999999999999999999998754
No 141
>PRK08275 putative oxidoreductase; Provisional
Probab=98.79 E-value=3e-08 Score=103.66 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=34.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~ 78 (455)
...+||+|||||+||+++|+.+++. |.+|+|+||.+..
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 4578999999999999999999987 7899999998763
No 142
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=1.5e-07 Score=98.19 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=32.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
....||||||+|.||+++|+.+ +.|.+|+|+||.+.
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 3568999999999999999999 89999999999764
No 143
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.79 E-value=2.3e-07 Score=97.17 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=33.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS 79 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~ 79 (455)
..+||+|||||+|||++|+.+++. |.+|+|+||.....
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~ 41 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMR 41 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 357999999999999999999987 58999999987643
No 144
>PRK06370 mercuric reductase; Validated
Probab=98.77 E-value=1.2e-07 Score=97.11 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=34.8
Q ss_pred cCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
||+.++||+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 35677999999999999999999999999999999863
No 145
>PRK09897 hypothetical protein; Provisional
Probab=98.74 E-value=1.1e-07 Score=97.80 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=31.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF 78 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~ 78 (455)
++|+|||||++|+++|..|.+.+ ++|+|||++..+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 47999999999999999998874 589999998765
No 146
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.73 E-value=2.8e-07 Score=95.31 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=32.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..||||||+|.|||++|+.+++ |.+|+|+||.+..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~ 37 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR 37 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence 5799999999999999999987 9999999998764
No 147
>PLN02676 polyamine oxidase
Probab=98.73 E-value=1.4e-06 Score=89.53 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=34.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFS 79 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~~ 79 (455)
...+||+|||||++||++|+.|+++|+ +|+|+|++....
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG 63 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 346799999999999999999999998 699999998654
No 148
>PRK10262 thioredoxin reductase; Provisional
Probab=98.72 E-value=2.1e-07 Score=90.67 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=32.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
...+||+||||||||+++|..|+++|++|++||+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 46789999999999999999999999999999954
No 149
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.72 E-value=1.8e-07 Score=96.06 Aligned_cols=35 Identities=34% Similarity=0.605 Sum_probs=33.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
...|||+||||||+|+++|+.|++.|.+|+|+|+.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 46799999999999999999999999999999985
No 150
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.71 E-value=1.1e-07 Score=99.40 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=35.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 45789999999999999999999999999999998765
No 151
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.70 E-value=1.3e-07 Score=96.36 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=31.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
+|||+||||||+|+++|+.++++|.+|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 152
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.67 E-value=7.8e-07 Score=92.60 Aligned_cols=37 Identities=35% Similarity=0.514 Sum_probs=33.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+||||||+|+||+++|+.+++. .+|+|+||....
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 4568999999999999999999986 899999998754
No 153
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.67 E-value=3.9e-07 Score=69.20 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=63.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeecC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSV 124 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~~ 124 (455)
+|+|||||+.|+-+|..|++.|.+|+|+++.+.+. . .+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~------------------~~----------------------- 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-P------------------GF----------------------- 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-T------------------TS-----------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-h------------------hc-----------------------
Confidence 48999999999999999999999999999987652 0 00
Q ss_pred CCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecC
Q 012845 125 TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD 204 (455)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~ 204 (455)
...+.+.+.+.+++.|+ ++++++.+.+++.++
T Consensus 39 -----------------------------~~~~~~~~~~~l~~~gV-------------------~v~~~~~v~~i~~~~ 70 (80)
T PF00070_consen 39 -----------------------------DPDAAKILEEYLRKRGV-------------------EVHTNTKVKEIEKDG 70 (80)
T ss_dssp -----------------------------SHHHHHHHHHHHHHTTE-------------------EEEESEEEEEEEEET
T ss_pred -----------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEEeC
Confidence 12455566777778786 999999999999988
Q ss_pred CceEEEEE
Q 012845 205 QCINVIAS 212 (455)
Q Consensus 205 ~~~~v~~~ 212 (455)
+++.|+++
T Consensus 71 ~~~~V~~~ 78 (80)
T PF00070_consen 71 DGVEVTLE 78 (80)
T ss_dssp TSEEEEEE
T ss_pred CEEEEEEe
Confidence 87666666
No 154
>PLN02568 polyamine oxidase
Probab=98.66 E-value=4e-07 Score=94.29 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=36.6
Q ss_pred cCCcccCEEEECCCHHHHHHHHHHHhCC-----CCEEEEcCCCCCC
Q 012845 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAFS 79 (455)
Q Consensus 39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g-----~~V~l~Er~~~~~ 79 (455)
||+++.||+|||||++||++|+.|++.| ++|+|||++..+.
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 4566789999999999999999999987 8999999988764
No 155
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.66 E-value=4.4e-07 Score=92.49 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=32.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
++|||+||||||+|+.+|+.|++.|.+|+|+||.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 3589999999999999999999999999999985
No 156
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.65 E-value=1.8e-07 Score=98.27 Aligned_cols=38 Identities=32% Similarity=0.562 Sum_probs=35.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 56799999999999999999999999999999998654
No 157
>PLN02487 zeta-carotene desaturase
Probab=98.65 E-value=1.9e-05 Score=82.18 Aligned_cols=63 Identities=21% Similarity=0.302 Sum_probs=49.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC------ccc----------ccChhHHHHHHhhhchHHHHH
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP------QAH----------FINNRYALVFRKLDGLAEEIE 106 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~------~~~----------~l~~~~~~~l~~~~gl~~~l~ 106 (455)
+.+|+|||||++||++|+.|++.|++|+|||+.+.+.... .+. +..++...+++++ |+.+.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~L-Gl~~~~~ 153 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKV-GADENLL 153 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhc-CCccccc
Confidence 4599999999999999999999999999999988764211 111 1236688889998 8876653
No 158
>PRK06116 glutathione reductase; Validated
Probab=98.65 E-value=3.7e-07 Score=93.23 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=32.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
+.+|||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 35799999999999999999999999999999985
No 159
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.65 E-value=5.5e-07 Score=92.33 Aligned_cols=35 Identities=40% Similarity=0.690 Sum_probs=33.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
.+|||+||||||+|+++|..|+++|.+|+|+||..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 57999999999999999999999999999999865
No 160
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.64 E-value=5.9e-07 Score=88.19 Aligned_cols=75 Identities=23% Similarity=0.381 Sum_probs=56.8
Q ss_pred cccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeC
Q 012845 150 AHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCN 227 (455)
Q Consensus 150 ~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d 227 (455)
.-++-..|.+.|.+.+.+. |+ .++++++|+++...+++ |.|.+....++. ..++.++
T Consensus 176 TDVnFG~LTr~l~~~l~~~~~~-------------------~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~--~~~v~a~ 234 (488)
T PF06039_consen 176 TDVNFGALTRQLVEYLQKQKGF-------------------ELHLNHEVTDIKRNGDGRWEVKVKDLKTGE--KREVRAK 234 (488)
T ss_pred ccccHHHHHHHHHHHHHhCCCc-------------------EEEecCEeCeeEECCCCCEEEEEEecCCCC--eEEEECC
Confidence 3456677888888888876 54 99999999999988776 888876443443 4588999
Q ss_pred EEEeecCCCch-hhhhcCC
Q 012845 228 ILIGTDGAGST-VRKLVGI 245 (455)
Q Consensus 228 ~vV~AdG~~S~-vr~~l~~ 245 (455)
+|+...|.+|. +..+.|+
T Consensus 235 FVfvGAGG~aL~LLqksgi 253 (488)
T PF06039_consen 235 FVFVGAGGGALPLLQKSGI 253 (488)
T ss_pred EEEECCchHhHHHHHHcCC
Confidence 99888887775 5566554
No 161
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.63 E-value=6.4e-07 Score=91.80 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=35.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
+.+|||+||||||+|+++|+.|+++|.+|+|+||....
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 56799999999999999999999999999999997554
No 162
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.63 E-value=2.4e-07 Score=91.51 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=65.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--------CcccccChhHHHHHHhhhchHH-HHHhcCCCccc
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------PQAHFINNRYALVFRKLDGLAE-EIERSQPPVDL 114 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~--------~~~~~l~~~~~~~l~~~~gl~~-~l~~~~~~~~~ 114 (455)
.||+|||||++|+.+|+.|++.|++|+|||+++..... ......+..+...+... |++. ++...+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~-Gll~~em~~lgsl~-- 79 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAV-GLLKEEMRRLGSLI-- 79 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcC-CchHHHHHHhcchh--
Confidence 58999999999999999999999999999987765321 12233444455566666 7765 343322110
Q ss_pred ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcc
Q 012845 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLN 169 (455)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g 169 (455)
+... +... .+......++|..+.+.|.+.+++.+
T Consensus 80 -----~~aa-d~~~---------------vPA~gaLvvdR~~~~~~L~~~L~~~p 113 (436)
T PRK05335 80 -----MEAA-DAHR---------------VPAGGALAVDREGFSEYVTEALENHP 113 (436)
T ss_pred -----eecc-cccC---------------CCCccceecCHHHHHHHHHHHHHcCC
Confidence 0000 0000 01222346789989999999998764
No 163
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.63 E-value=6.4e-07 Score=91.89 Aligned_cols=38 Identities=26% Similarity=0.536 Sum_probs=34.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
+.+|||+||||||+|+.+|..|++.|.+|+|+|+.+..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~ 39 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL 39 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 45799999999999999999999999999999987543
No 164
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.63 E-value=9.7e-07 Score=92.93 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=30.4
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 46 VvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
|+|||+|+|||++|+.+++.|.+|+|+||.+.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~ 32 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA 32 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 79999999999999999999999999999873
No 165
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.62 E-value=1e-06 Score=87.85 Aligned_cols=63 Identities=21% Similarity=0.427 Sum_probs=49.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCC--------------CcccccC-hhHHHHHHhhhchHHHHHh
Q 012845 45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTH--------------PQAHFIN-NRYALVFRKLDGLAEEIER 107 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~~~~--------------~~~~~l~-~~~~~~l~~~~gl~~~l~~ 107 (455)
.|+|||||++||++|+.|+|++ ++|+|||+.+..... ....... +..+++++++ |+.+.+..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eL-Gled~l~~ 80 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKEL-GLEDKLLW 80 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHh-CcHHhhcc
Confidence 5999999999999999999999 999999998665421 1112222 5677888999 99998874
Q ss_pred c
Q 012845 108 S 108 (455)
Q Consensus 108 ~ 108 (455)
.
T Consensus 81 ~ 81 (444)
T COG1232 81 N 81 (444)
T ss_pred C
Confidence 3
No 166
>PRK14694 putative mercuric reductase; Provisional
Probab=98.62 E-value=8.7e-07 Score=90.90 Aligned_cols=36 Identities=14% Similarity=0.431 Sum_probs=33.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..++||+||||||+|+++|..|++.|.+|+|||+..
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 467999999999999999999999999999999863
No 167
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.62 E-value=2.7e-07 Score=83.25 Aligned_cols=33 Identities=36% Similarity=0.686 Sum_probs=30.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
||+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987654
No 168
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.61 E-value=3.2e-07 Score=95.86 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=34.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.++||+|||+|++|+++|+.|++.|.+|+||||.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4789999999999999999999999999999998654
No 169
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.60 E-value=3.1e-07 Score=96.49 Aligned_cols=38 Identities=42% Similarity=0.659 Sum_probs=35.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..++||||||+|++|+++|+.++++|.+|+|+||....
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~ 44 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 45789999999999999999999999999999998765
No 170
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.59 E-value=4e-07 Score=95.58 Aligned_cols=38 Identities=24% Similarity=0.529 Sum_probs=34.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..++||+|||+|++|+++|+.++++|.+|+|+||....
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34789999999999999999999999999999998754
No 171
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.58 E-value=9.4e-07 Score=92.05 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=33.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+||||||+|.||+++|+.+++ |.+|+|+||.+..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~ 43 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLK 43 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCC
Confidence 457899999999999999999975 9999999998754
No 172
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.58 E-value=3.2e-07 Score=95.90 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=34.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..++||||||+|.|||++|+.+++.|.+|+|+||.+
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467899999999999999999999999999999998
No 173
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.57 E-value=2.8e-07 Score=95.40 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=33.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..+||||||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~ 41 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF 41 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 47899999999 9999999999999999999998764
No 174
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.57 E-value=6.5e-08 Score=70.77 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=29.5
Q ss_pred EECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 48 IVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 48 IVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
|||||++||++|+.|++.|++|+||||++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999998774
No 175
>PRK12839 hypothetical protein; Provisional
Probab=98.56 E-value=4.9e-07 Score=94.58 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=35.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..++||+|||+|++|+++|+.|++.|.+|+|+||....
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 45799999999999999999999999999999998664
No 176
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.55 E-value=1.4e-06 Score=89.62 Aligned_cols=34 Identities=35% Similarity=0.641 Sum_probs=32.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er 74 (455)
...|||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3579999999999999999999999999999998
No 177
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.55 E-value=3.6e-06 Score=86.11 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=34.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFST 80 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~~~ 80 (455)
.+.+|+|||||+|||++|..|++. |.+|+|||+.+.+..
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG 63 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGG 63 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCC
Confidence 357899999999999999999995 689999999987654
No 178
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.55 E-value=2e-05 Score=84.36 Aligned_cols=38 Identities=37% Similarity=0.471 Sum_probs=35.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
...+|+|||||++|+++|+.|++.|++|+|+|++..+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 46899999999999999999999999999999997664
No 179
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.55 E-value=4.4e-08 Score=95.60 Aligned_cols=150 Identities=19% Similarity=0.294 Sum_probs=80.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCcccccChhHH--HHHHhhhchHHHHHhcCCCcccccceE
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYA--LVFRKLDGLAEEIERSQPPVDLWRKFI 119 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~~~~~~~~~l~~~~~--~~l~~~~gl~~~l~~~~~~~~~~~~~~ 119 (455)
.+|+++||.||++|++|++|...+ .++..|||.+....+.+ ..+....+ ..|+. +.....|...+...-
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~g-mll~~~~~q~~fl~D-------lvt~~~P~s~~sfln 73 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPG-MLLPGARMQVSFLKD-------LVTLRDPTSPFSFLN 73 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGG-G--SS-B-SS-TTSS-------SSTTT-TTSTTSHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCc-cCCCCCccccccccc-------cCcCcCCCCcccHHH
Confidence 489999999999999999999886 99999999887654432 11111100 11111 111111111111110
Q ss_pred EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (455)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 199 (455)
|. ...|...... ......++|.++.++|.-.+++.+. .++++.+|++
T Consensus 74 YL-~~~~rl~~f~-------------~~~~~~p~R~ef~dYl~Wva~~~~~-------------------~v~~~~~V~~ 120 (341)
T PF13434_consen 74 YL-HEHGRLYEFY-------------NRGYFFPSRREFNDYLRWVAEQLDN-------------------QVRYGSEVTS 120 (341)
T ss_dssp HH-HHTT-HHHHH-------------HH--SS-BHHHHHHHHHHHHCCGTT-------------------TEEESEEEEE
T ss_pred HH-HHcCChhhhh-------------hcCCCCCCHHHHHHHHHHHHHhCCC-------------------ceEECCEEEE
Confidence 00 0111111100 0112446899999999999888764 6999999999
Q ss_pred eeecCC----ceEEEEEeccCCcceeEEEEeCEEEeecCCC
Q 012845 200 VSATDQ----CINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (455)
Q Consensus 200 i~~~~~----~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~ 236 (455)
|+..++ .+.|.+. +.++...++.|+-||.|.|..
T Consensus 121 I~~~~~~~~~~~~V~~~---~~~g~~~~~~ar~vVla~G~~ 158 (341)
T PF13434_consen 121 IEPDDDGDEDLFRVTTR---DSDGDGETYRARNVVLATGGQ 158 (341)
T ss_dssp EEEEEETTEEEEEEEEE---ETTS-EEEEEESEEEE----E
T ss_pred EEEecCCCccEEEEEEe---ecCCCeeEEEeCeEEECcCCC
Confidence 987654 3677775 233334589999999999943
No 180
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.54 E-value=7.5e-07 Score=77.02 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=44.1
Q ss_pred ccchhhHHHHHHHHHHhcccccccCCCcccccccccccc-eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR-EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL 229 (455)
Q Consensus 151 ~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v 229 (455)
..+|..+-++|.+.+.+.-- .+..++ ..+...+|+++...+++..+.+. +|. .+.+|.|
T Consensus 90 f~pR~~~G~YL~~~~~~~~~-------------~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~---~g~----~~~~d~V 149 (156)
T PF13454_consen 90 FPPRALFGEYLRDRFDRLLA-------------RLPAGITVRHVRAEVVDIRRDDDGYRVVTA---DGQ----SIRADAV 149 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHH-------------hhcCCcEEEEEeeEEEEEEEcCCcEEEEEC---CCC----EEEeCEE
Confidence 45677777777766554210 011111 23357799999999888877776 775 7899999
Q ss_pred EeecCC
Q 012845 230 IGTDGA 235 (455)
Q Consensus 230 V~AdG~ 235 (455)
|.|+|.
T Consensus 150 vLa~Gh 155 (156)
T PF13454_consen 150 VLATGH 155 (156)
T ss_pred EECCCC
Confidence 999995
No 181
>PLN02268 probable polyamine oxidase
Probab=98.53 E-value=1.5e-06 Score=88.42 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=33.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
.+|+|||||+|||++|+.|.+.|++|+|+|+++...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 479999999999999999999999999999988664
No 182
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.53 E-value=6.9e-07 Score=90.92 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=33.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
++|||+||||||||+++|..|++.|.+|+||||.+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 469999999999999999999999999999998763
No 183
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.53 E-value=1.5e-06 Score=89.98 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=31.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..+.||+|||+|.|||++|+.++ |.+|+|+||.+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 45689999999999999999997 569999999876
No 184
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.50 E-value=1.4e-06 Score=86.22 Aligned_cols=183 Identities=16% Similarity=0.164 Sum_probs=98.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-cccccChhHHHHHHhh----h-----chHHHHHh---
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKL----D-----GLAEEIER--- 107 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~-~~~~l~~~~~~~l~~~----~-----gl~~~l~~--- 107 (455)
..++||+|||||-.|.-+|+-.+-+|++|.++|+++..+... ...-|--.+++.|++. + =+.+.|.+
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~ 144 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERAN 144 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 446999999999999999999999999999999998764322 2222223334444321 0 01122211
Q ss_pred ---cCC----------Ccccccc-------eEEeecCCCCccc-------------cccCCCccccccccCCccccccch
Q 012845 108 ---SQP----------PVDLWRK-------FIYCTSVTGPILG-------------SVDHMQPQDFEKVVSPVSVAHFSQ 154 (455)
Q Consensus 108 ---~~~----------~~~~~~~-------~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~i~r 154 (455)
..+ |+-.|.+ ..++....|.... .++......+.... -+.-...+-
T Consensus 145 lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~-VYyDGQ~nD 223 (680)
T KOG0042|consen 145 LLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAM-VYYDGQHND 223 (680)
T ss_pred HhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEE-EEecCCCch
Confidence 111 1111211 1111111221111 11111111111000 001122233
Q ss_pred hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecC
Q 012845 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDG 234 (455)
Q Consensus 155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG 234 (455)
..+.-.+.--+.+.|+ .+....+|+++..++++-.+.....|.-++.+..+.++.||-|+|
T Consensus 224 aRmnl~vAlTA~r~GA-------------------~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATG 284 (680)
T KOG0042|consen 224 ARMNLAVALTAARNGA-------------------TVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATG 284 (680)
T ss_pred HHHHHHHHHHHHhcch-------------------hhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCC
Confidence 4455555555666776 677778888887766653233333345566677899999999999
Q ss_pred CCchhhhhc
Q 012845 235 AGSTVRKLV 243 (455)
Q Consensus 235 ~~S~vr~~l 243 (455)
..|---+++
T Consensus 285 pfsDsIr~M 293 (680)
T KOG0042|consen 285 PFSDSIRKM 293 (680)
T ss_pred CccHHHHhh
Confidence 999744444
No 185
>PLN02529 lysine-specific histone demethylase 1
Probab=98.49 E-value=2.1e-05 Score=83.65 Aligned_cols=38 Identities=37% Similarity=0.448 Sum_probs=34.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
...||+|||||++|+++|..|+++|++|+|+|+++...
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G 196 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPG 196 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCc
Confidence 46799999999999999999999999999999987643
No 186
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.48 E-value=7e-07 Score=92.12 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=32.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
..|||+||||||+|+.+|+.|+++|.+|+|+|+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 4689999999999999999999999999999974
No 187
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.48 E-value=1.3e-06 Score=89.57 Aligned_cols=37 Identities=32% Similarity=0.543 Sum_probs=33.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
++|||+||||||+|+.+|+.+++.|.+|+|+|++...
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~ 38 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL 38 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCce
Confidence 3599999999999999999999999999999975443
No 188
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.47 E-value=1.4e-06 Score=88.65 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=33.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
++|||+||||||+|+.+|+.|+++|.+|+|+|+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 46999999999999999999999999999999875
No 189
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.47 E-value=2.9e-05 Score=72.83 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=33.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~ 78 (455)
..+.||+|||||..|++.|+.|+++ |++|+|+||++..
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 3468999999999999999999765 7999999999765
No 190
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.46 E-value=2.6e-06 Score=83.44 Aligned_cols=40 Identities=33% Similarity=0.460 Sum_probs=36.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~ 80 (455)
.+..||+|||+|.+||++|+.|.+.|++|+|+|-++....
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 4578999999999999999999999999999999877643
No 191
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.45 E-value=1.2e-06 Score=88.86 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecC-CceEEEEEeccCCcceeEEEEeCEEEeec
Q 012845 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCNILIGTD 233 (455)
Q Consensus 155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~~~d~vV~Ad 233 (455)
..+.+.|.+.+++.|+ +|+++++|+++..++ ++..+.+... ++. ..+.++.||.|+
T Consensus 123 ~~l~~~L~~~a~~~Gv-------------------~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~---~~i~ak~VIlAt 179 (432)
T TIGR02485 123 KALTNALYSSAERLGV-------------------EIRYGIAVDRIPPEAFDGAHDGPLTT-VGT---HRITTQALVLAA 179 (432)
T ss_pred HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEecCCCCeEEEEEEc-CCc---EEEEcCEEEEcC
Confidence 4588889999999887 999999999998752 3322222111 221 378899999999
Q ss_pred CCCchhh
Q 012845 234 GAGSTVR 240 (455)
Q Consensus 234 G~~S~vr 240 (455)
|..+..+
T Consensus 180 GG~~~n~ 186 (432)
T TIGR02485 180 GGLGANR 186 (432)
T ss_pred CCcccCH
Confidence 9876533
No 192
>PTZ00058 glutathione reductase; Provisional
Probab=98.43 E-value=2.4e-06 Score=88.84 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=33.7
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
...+|||+||||||+|.++|+.+++.|.+|+|+||.
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 346899999999999999999999999999999986
No 193
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.43 E-value=5.7e-06 Score=86.91 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=35.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
..++||||||+|++|+++|+.++++|.+|+|+||.+...
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 457899999999999999999999999999999987653
No 194
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.43 E-value=4.2e-06 Score=87.39 Aligned_cols=37 Identities=27% Similarity=0.589 Sum_probs=34.1
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..++||||||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~ 50 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV 50 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 457999999999 8999999999999999999998765
No 195
>PRK13748 putative mercuric reductase; Provisional
Probab=98.43 E-value=5.4e-06 Score=87.17 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=32.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
.+|||+||||||+|+++|+.|++.|.+|.|+|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999986
No 196
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=3.8e-06 Score=86.17 Aligned_cols=34 Identities=41% Similarity=0.681 Sum_probs=32.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
.++||+||||||+|+++|+.|++.|.+|+|+|+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999985
No 197
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.41 E-value=1.6e-06 Score=90.85 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=31.4
Q ss_pred CEEEECCCHHHHHHHHHHH----hCCCCEEEEcCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLT----KLGIKCSVLEKNKAF 78 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La----~~g~~V~l~Er~~~~ 78 (455)
||||||||+|||++|+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 679999999998653
No 198
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.41 E-value=1.1e-05 Score=91.26 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=35.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
+.+.||||||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 46799999999999999999999999999999998765
No 199
>PLN02507 glutathione reductase
Probab=98.40 E-value=4.9e-06 Score=85.87 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
..+|||+||||||+|+.+|..+++.|.+|.|+|+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 34699999999999999999999999999999973
No 200
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.39 E-value=5.6e-06 Score=81.73 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=90.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----c----------------------cccc-ChhHHHHHHh
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----Q----------------------AHFI-NNRYALVFRK 97 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~----------------------~~~l-~~~~~~~l~~ 97 (455)
||+|||+|+|||++|+.|++. ++|+|+-|.+...... . |.++ ...+++.+-.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999998 9999999987652100 0 1111 1112222211
Q ss_pred h-hchHHHHHhcCCCcccccceEEeecCCCCccccccCCCccccccccCCccccc---cchhhHHHHHHHHHHhcccccc
Q 012845 98 L-DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH---FSQYKLNKLLLKQLEKLNFKIC 173 (455)
Q Consensus 98 ~-~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~r~~l~~~L~~~~~~~g~~~~ 173 (455)
- +...+.|.+.+.+.+.-..-.++....|- .+.....+ -+-..+...|.+.+++..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~Egg----------------HS~rRIlH~~~~TG~~I~~~L~~~v~~~p---- 147 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGG----------------HSRRRILHAADATGKEIMTALLKKVRNRP---- 147 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecc----------------cCCceEEEecCCccHHHHHHHHHHHhcCC----
Confidence 1 12233444445444221110011111110 00111111 233568888888888743
Q ss_pred cCCCcccccccccccceEEeccEEEEeeecCC-ceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhh
Q 012845 174 TSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRK 241 (455)
Q Consensus 174 ~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~-~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~ 241 (455)
++++..++.+.++..+++ .+. +.+. +.+. ...++.++.||.|+|..+.+-.
T Consensus 148 --------------~I~v~e~~~a~~li~~~~~~~~Gv~~~--~~~~-~~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 148 --------------NITVLEGAEALDLIIEDGIGVAGVLVL--NRNG-ELGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred --------------CcEEEecchhhhhhhcCCceEeEEEEe--cCCC-eEEEEecCeEEEecCCCccccc
Confidence 369999999999988777 332 3333 1222 3458899999999998876543
No 201
>PLN02976 amine oxidase
Probab=98.39 E-value=2.5e-05 Score=86.64 Aligned_cols=38 Identities=32% Similarity=0.557 Sum_probs=34.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
...+|+|||||++|+++|+.|++.|++|+|||+++.+.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG 729 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence 35899999999999999999999999999999986653
No 202
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.38 E-value=3.2e-06 Score=86.65 Aligned_cols=35 Identities=34% Similarity=0.661 Sum_probs=32.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.|||+||||||+|+++|+.|++.|.+|+|+|+ +..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~ 35 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYL 35 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCC
Confidence 38999999999999999999999999999998 443
No 203
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.38 E-value=8.9e-07 Score=97.22 Aligned_cols=37 Identities=32% Similarity=0.586 Sum_probs=34.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+|+|||||||||++|+.|++.|++|+|||+.+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~ 341 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL 341 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence 4679999999999999999999999999999988654
No 204
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.37 E-value=3.1e-06 Score=84.20 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=32.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.||+|||||++|+.+|+.|+++|++|+|||+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 37999999999999999999999999999987653
No 205
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.36 E-value=6.7e-06 Score=85.13 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=36.6
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
+..++||||||||.|||.+|+.+++.|.+|.|+||....+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 3568999999999999999999999999999999997654
No 206
>PLN02546 glutathione reductase
Probab=98.36 E-value=6e-06 Score=85.90 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=31.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er 74 (455)
.+|||+||||||+|..+|..++++|.+|.|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 468999999999999999999999999999996
No 207
>PLN03000 amine oxidase
Probab=98.34 E-value=3.2e-05 Score=82.89 Aligned_cols=38 Identities=39% Similarity=0.528 Sum_probs=35.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
...+|+|||||++||.+|..|++.|++|+|||+++.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 45899999999999999999999999999999988764
No 208
>PRK14727 putative mercuric reductase; Provisional
Probab=98.34 E-value=1.1e-05 Score=82.91 Aligned_cols=39 Identities=18% Similarity=0.403 Sum_probs=35.1
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.+.++||+||||||+|+++|+.|+++|.+|+|+||....
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~ 51 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI 51 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence 356799999999999999999999999999999987544
No 209
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.34 E-value=3.3e-05 Score=75.51 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEee
Q 012845 154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT 232 (455)
Q Consensus 154 r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~A 232 (455)
-.++.+-+++.+++.|+ +|+++++|.+++..++.+. +.++ +|. ++.+|.||.|
T Consensus 172 l~~vvkni~~~l~~~G~-------------------ei~f~t~VeDi~~~~~~~~~v~~~---~g~----~i~~~~vvlA 225 (486)
T COG2509 172 LPKVVKNIREYLESLGG-------------------EIRFNTEVEDIEIEDNEVLGVKLT---KGE----EIEADYVVLA 225 (486)
T ss_pred hHHHHHHHHHHHHhcCc-------------------EEEeeeEEEEEEecCCceEEEEcc---CCc----EEecCEEEEc
Confidence 35678889999999986 9999999999998877543 5555 665 8999999999
Q ss_pred cCCCc
Q 012845 233 DGAGS 237 (455)
Q Consensus 233 dG~~S 237 (455)
-|..+
T Consensus 226 ~Grsg 230 (486)
T COG2509 226 PGRSG 230 (486)
T ss_pred cCcch
Confidence 99776
No 210
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.33 E-value=1.1e-05 Score=82.77 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
|||+||||||+|+++|+.|++.|.+|+|+||..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999864
No 211
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.33 E-value=8e-06 Score=81.42 Aligned_cols=108 Identities=19% Similarity=0.394 Sum_probs=79.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||++|+-+|..|++.|.+|+++|+.+.+.. ..
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------~~--------------------- 180 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------SL--------------------- 180 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------hh---------------------
Confidence 35799999999999999999999999999998754310 00
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
+ ...+.+.+.+.+++.|+ +++.+++|+++..
T Consensus 181 -----------------------------~-~~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~ 211 (377)
T PRK04965 181 -----------------------------M-PPEVSSRLQHRLTEMGV-------------------HLLLKSQLQGLEK 211 (377)
T ss_pred -----------------------------C-CHHHHHHHHHHHHhCCC-------------------EEEECCeEEEEEc
Confidence 0 01233445666777776 8999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc--hhhhhcCCC
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS--TVRKLVGID 246 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S--~vr~~l~~~ 246 (455)
+++.+.+.+. +|. ++.+|+||.|.|... .+.+..|..
T Consensus 212 ~~~~~~v~~~---~g~----~i~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 212 TDSGIRATLD---SGR----SIEVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred cCCEEEEEEc---CCc----EEECCEEEECcCCCcchHHHHHCCCC
Confidence 7666666655 664 789999999999855 344555543
No 212
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.32 E-value=4.8e-07 Score=92.97 Aligned_cols=38 Identities=39% Similarity=0.658 Sum_probs=35.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
+.+||||||||+.||++|..|+|+|++|+|+||+..+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G 39 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence 46899999999999999999999999999999998764
No 213
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.32 E-value=8.6e-06 Score=83.47 Aligned_cols=34 Identities=38% Similarity=0.635 Sum_probs=32.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
.+|||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4699999999999999999999999999999983
No 214
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.31 E-value=8.9e-07 Score=90.09 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=45.3
Q ss_pred ccccccCCCCCcccccccCCCcccccCCcccCEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCCC
Q 012845 14 SRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTK--LGIKCSVLEKNKAFS 79 (455)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~--~g~~V~l~Er~~~~~ 79 (455)
++++|..+|+...+... ++.. .....+|+||||||||+++|..|++ .|++|+|||+.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~---~~~~--~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 2 SRLRARTWLSRALSFSN---SSSS--TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred ceeehhhcccccccccc---CCCC--CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 35666667666544432 2211 1456789999999999999999987 699999999998763
No 215
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.31 E-value=1.6e-05 Score=87.73 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=34.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..++||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3568999999999999999999999999999999875
No 216
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.31 E-value=3.9e-06 Score=77.76 Aligned_cols=193 Identities=17% Similarity=0.180 Sum_probs=106.3
Q ss_pred CCCCcccccccCCCcccccCCcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCC---------cccccCh
Q 012845 21 YPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHP---------QAHFINN 89 (455)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~---------~~~~l~~ 89 (455)
.+...+..++++.-..+.+ ..++|+||||||+.|++.|..|.-+ +.+|.|+|+......+. .|+-..|
T Consensus 27 ~~~~~t~~R~i~gg~~s~s-~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P 105 (453)
T KOG2665|consen 27 TWNLITIKRGISGGAESIS-KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKP 105 (453)
T ss_pred CccccceeccccCCccccc-cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCC
Confidence 3444444455544333332 5689999999999999999999877 99999999987653211 2334445
Q ss_pred hHHHHH---HhhhchHHHHHhcCCCcccccceEEeecCC------------------CCc-cccccCCCcc----ccccc
Q 012845 90 RYALVF---RKLDGLAEEIERSQPPVDLWRKFIYCTSVT------------------GPI-LGSVDHMQPQ----DFEKV 143 (455)
Q Consensus 90 ~~~~~l---~~~~gl~~~l~~~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~~~~~~----~~~~~ 143 (455)
+++.+- +-..=+++...+...|.+............ |.. +...+.+... .....
T Consensus 106 ~SLKAklCV~G~~LlY~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl 185 (453)
T KOG2665|consen 106 GSLKAKLCVEGRELLYEYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKAL 185 (453)
T ss_pred cccchhhhhccHHHHHHHhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhh
Confidence 444331 101001222223333332222221111100 000 0000000000 01111
Q ss_pred cCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCc---eEEEEEeccCCcce
Q 012845 144 VSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC---INVIASFLKEGKCT 220 (455)
Q Consensus 144 ~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~---~~v~~~~~~~g~~~ 220 (455)
.+| .+..++...+...+-+..+..|. .++.+-++..+.+.++. .-+++. ++..
T Consensus 186 ~sP-htGIvD~~~v~ls~~edF~~~gg-------------------~i~~n~~l~g~~~n~~~~~~Ypivv~---ngk~- 241 (453)
T KOG2665|consen 186 LSP-HTGIVDWGSVTLSFGEDFDFMGG-------------------RIYTNFRLQGIAQNKEATFSYPIVVL---NGKG- 241 (453)
T ss_pred cCC-CcceeehHHHHHHHHHHHHHhcc-------------------cccccceeccchhccCCCCCCceEEe---cCcc-
Confidence 222 24446666777777777888776 89999999999876542 334555 5653
Q ss_pred eEEEEeCEEEeecCCCchh
Q 012845 221 ERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 221 ~~~~~~d~vV~AdG~~S~v 239 (455)
+++++..+|.|.|-.|..
T Consensus 242 -ee~r~~~~vtc~gl~sdr 259 (453)
T KOG2665|consen 242 -EEKRTKNVVTCAGLQSDR 259 (453)
T ss_pred -ceeEEeEEEEeccccHhH
Confidence 378999999999988763
No 217
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.30 E-value=3.1e-06 Score=77.49 Aligned_cols=175 Identities=18% Similarity=0.265 Sum_probs=92.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCCCCCC-CC-cccccC----hhHHHHHHhhh-chHHHHHhc
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNKAFST-HP-QAHFIN----NRYALVFRKLD-GLAEEIERS 108 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g------~~V~l~Er~~~~~~-~~-~~~~l~----~~~~~~l~~~~-gl~~~l~~~ 108 (455)
...+|+|||||+.|.++|++|++++ +.|+|||...-... .+ .+..|. +.-..-|..+- .|.++|.+.
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde 88 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE 88 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence 3478999999999999999999997 78999998864421 11 111121 11111111110 233444333
Q ss_pred CCCcccccc-----eEEeecC----CCCccccccCCCcc---ccccccCCccccccchhhHHHHHHHHHHhcccccccCC
Q 012845 109 QPPVDLWRK-----FIYCTSV----TGPILGSVDHMQPQ---DFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSE 176 (455)
Q Consensus 109 ~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~ 176 (455)
......|.. +....+. .+..-...+|.... ............+++...+.+.++..+++.|.
T Consensus 89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~------ 162 (380)
T KOG2852|consen 89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGG------ 162 (380)
T ss_pred hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcC------
Confidence 333333322 1111111 11111112222221 11112223345678888999999999998774
Q ss_pred CcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 177 GTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 177 ~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
+++.+|+ |+++..+..++. +... .....-+..+.+.+|.+.|.|+.
T Consensus 163 ------------V~lv~Gk-v~ev~dEk~r~n~v~~a---e~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 163 ------------VKLVFGK-VKEVSDEKHRINSVPKA---EAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred ------------eEEEEee-eEEeecccccccccchh---hhcCceEEeeeeEEEEecCCCch
Confidence 4777764 555543333222 1111 11111235678999999999985
No 218
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.28 E-value=3.7e-06 Score=85.79 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=30.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF 78 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~ 78 (455)
+|+|||||++|+++|..|++.+ .+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 6999999999999999999985 589999998754
No 219
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.27 E-value=1.9e-05 Score=80.91 Aligned_cols=32 Identities=22% Similarity=0.590 Sum_probs=30.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+|+||||||+|+++|..|++.|.+|+|+||.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999875
No 220
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.26 E-value=6.6e-06 Score=83.66 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=31.1
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~ 78 (455)
+|||||||++|+.+|..|++. +.+|+|||+.+..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 799999999999999999987 6889999998764
No 221
>PRK12831 putative oxidoreductase; Provisional
Probab=98.26 E-value=1.6e-06 Score=88.52 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=34.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
....||+||||||||+++|+.|++.|++|+|||+.+.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 35679999999999999999999999999999987654
No 222
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.23 E-value=4.9e-06 Score=90.60 Aligned_cols=37 Identities=30% Similarity=0.568 Sum_probs=34.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+|+||||||||+++|+.|++.|++|+|||+.+.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 4579999999999999999999999999999988764
No 223
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.22 E-value=7.6e-06 Score=82.13 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=32.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~~ 78 (455)
...+|+|||||+||+.+|..|++.|. +|+|+++.+..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 34589999999999999999999987 69999987654
No 224
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.9e-06 Score=72.90 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=77.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
..+-+|+|||+|||+-.+|++++++.++.+|||-...-. ...|..|+.- .-.+.+||+++
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~-i~pGGQLtTT--T~veNfPGFPd----------------- 65 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG-IAPGGQLTTT--TDVENFPGFPD----------------- 65 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC-cCCCceeeee--eccccCCCCCc-----------------
Confidence 445689999999999999999999999999999553321 1112222110 00111122211
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
.+.-.+|.+-|++..++.|. +| +...|.++
T Consensus 66 ------------------------------gi~G~~l~d~mrkqs~r~Gt-------------------~i-~tEtVskv 95 (322)
T KOG0404|consen 66 ------------------------------GITGPELMDKMRKQSERFGT-------------------EI-ITETVSKV 95 (322)
T ss_pred ------------------------------ccccHHHHHHHHHHHHhhcc-------------------ee-eeeehhhc
Confidence 23445788889999999885 33 55567777
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
+.......+.+. .+ .+.+|.||.|+|+..
T Consensus 96 ~~sskpF~l~td---~~-----~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 96 DLSSKPFKLWTD---AR-----PVTADAVILATGASA 124 (322)
T ss_pred cccCCCeEEEec---CC-----ceeeeeEEEecccce
Confidence 776666655432 22 789999999999643
No 225
>PRK07208 hypothetical protein; Provisional
Probab=98.20 E-value=1.6e-06 Score=89.28 Aligned_cols=40 Identities=35% Similarity=0.503 Sum_probs=36.5
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
|+...||+|||||++||++|+.|+++|++|+|+|+++...
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 3567899999999999999999999999999999988764
No 226
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.20 E-value=5.5e-05 Score=77.96 Aligned_cols=36 Identities=33% Similarity=0.528 Sum_probs=34.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
+||+|||+||+|+.+|..|+++|++|+|||+.....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999998875
No 227
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.20 E-value=2.6e-05 Score=78.63 Aligned_cols=104 Identities=27% Similarity=0.407 Sum_probs=81.0
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~ 120 (455)
..+..++|||||+.|+=+|..+++.|.+|+|+|+.+.+- |+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------p~~------------------- 212 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------PGE------------------- 212 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------CcC-------------------
Confidence 346689999999999999999999999999999987651 111
Q ss_pred eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (455)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i 200 (455)
-.++.+.+.+.+++.|+ .++.+++++.+
T Consensus 213 ---------------------------------D~ei~~~~~~~l~~~gv-------------------~i~~~~~v~~~ 240 (454)
T COG1249 213 ---------------------------------DPEISKELTKQLEKGGV-------------------KILLNTKVTAV 240 (454)
T ss_pred ---------------------------------CHHHHHHHHHHHHhCCe-------------------EEEccceEEEE
Confidence 12455567777777555 89999999999
Q ss_pred eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+..++++.+.+. +|... ++++|.|+.|.|+.-.+
T Consensus 241 ~~~~~~v~v~~~---~g~~~--~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 241 EKKDDGVLVTLE---DGEGG--TIEADAVLVAIGRKPNT 274 (454)
T ss_pred EecCCeEEEEEe---cCCCC--EEEeeEEEEccCCccCC
Confidence 987777777776 55422 67899999999975543
No 228
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.20 E-value=7.2e-06 Score=78.01 Aligned_cols=66 Identities=27% Similarity=0.452 Sum_probs=47.1
Q ss_pred cccccccccccccCCCCCc---ccccccCCCcccccCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 7 TRGLNCFSRIKTFPYPYGY---TQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.|-++||++-...+..... .+.+.++.+ ...+||+|||+||+|-.+|+..++.|++...+|++...
T Consensus 6 rr~~~~~~~~~~~~~~~~~~~~~~~r~fa~~------~~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335|consen 6 RREASLFSTSNQLPMGANRFIFSSKRSFASS------ANDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred hheeeeeeccCcCccchhhhhhhhhhhhhcc------CccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence 4667777775444432221 122222222 25799999999999999999999999999999998765
No 229
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.19 E-value=7.5e-06 Score=80.88 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=34.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhC--C-CCEEEEcCCCCCCCCCcccccCh
Q 012845 44 VPVLIVGAGPVGLVLSILLTKL--G-IKCSVLEKNKAFSTHPQAHFINN 89 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~--g-~~V~l~Er~~~~~~~~~~~~l~~ 89 (455)
++|+|||||++|+.+|.+|.+. . ..|.|||+.+.. ++|...++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~---G~GiaYs~ 47 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF---GQGIAYST 47 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc---CCCccCCC
Confidence 6899999999999999999887 1 239999998776 45544443
No 230
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.18 E-value=2.3e-05 Score=87.33 Aligned_cols=37 Identities=30% Similarity=0.559 Sum_probs=34.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..+||+||||||||+++|+.|++.|++|+|+|+.+.+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999998765
No 231
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.18 E-value=3.5e-05 Score=79.14 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=32.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKN 75 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~ 75 (455)
++|||+||||||+|..+|+.+++. |.+|.|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 569999999999999999999997 9999999985
No 232
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.18 E-value=2.2e-05 Score=80.47 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=30.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
||+|||||++|+.+|..|+++|.+|+|+||..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999999999999864
No 233
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.18 E-value=1.8e-05 Score=79.46 Aligned_cols=99 Identities=22% Similarity=0.339 Sum_probs=74.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+. ...
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l----------------~~~------------------------ 183 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM----------------GRN------------------------ 183 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch----------------hhh------------------------
Confidence 3579999999999999999999999999999876431 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
....+.+.+.+.+++.|+ +++.+++|++++.
T Consensus 184 ------------------------------~~~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~ 214 (396)
T PRK09754 184 ------------------------------APPPVQRYLLQRHQQAGV-------------------RILLNNAIEHVVD 214 (396)
T ss_pred ------------------------------cCHHHHHHHHHHHHHCCC-------------------EEEeCCeeEEEEc
Confidence 011334456666677786 9999999999976
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
++.+.+.+. +|+ ++.+|+||.|.|....
T Consensus 215 -~~~~~v~l~---~g~----~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 215 -GEKVELTLQ---SGE----TLQADVVIYGIGISAN 242 (396)
T ss_pred -CCEEEEEEC---CCC----EEECCEEEECCCCChh
Confidence 444555554 665 7899999999998654
No 234
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.17 E-value=3.1e-05 Score=81.90 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=32.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
.+|||+|||+||+|..+|+.+++.|.+|+|+|+.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3789999999999999999999999999999974
No 235
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.16 E-value=2.4e-05 Score=80.22 Aligned_cols=103 Identities=19% Similarity=0.334 Sum_probs=77.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+... |.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------~~~--------------------- 209 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------PGE--------------------- 209 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------CCC---------------------
Confidence 4689999999999999999999999999999875421 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
...+.+.+.+.+++.|+ +++.+++|.+++.
T Consensus 210 -------------------------------~~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~ 239 (461)
T TIGR01350 210 -------------------------------DAEVSKVVAKALKKKGV-------------------KILTNTKVTAVEK 239 (461)
T ss_pred -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEE
Confidence 01233445666777776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR 240 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr 240 (455)
+++.+.+... +|. ..++.+|.||.|.|......
T Consensus 240 ~~~~v~v~~~---~g~--~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 240 NDDQVVYENK---GGE--TETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred eCCEEEEEEe---CCc--EEEEEeCEEEEecCCcccCC
Confidence 7666665544 442 23689999999999877544
No 236
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.16 E-value=2.2e-05 Score=79.50 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=33.2
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
+.+.+|||||||.||+.+|..|.+.+.+|+|||+++..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 34679999999999999999998778999999987643
No 237
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.14 E-value=2.9e-05 Score=79.86 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=31.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
+|||+||||||+|+.+|+.+++.|.+|.|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999975
No 238
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.12 E-value=3e-05 Score=79.47 Aligned_cols=100 Identities=21% Similarity=0.327 Sum_probs=76.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+. +.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~--------------------- 214 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------SFL--------------------- 214 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------CcC---------------------
Confidence 4689999999999999999999999999999875431 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
-.++.+.|.+.+++.|+ +++.+++|++++.
T Consensus 215 -------------------------------d~~~~~~l~~~l~~~gI-------------------~v~~~~~v~~i~~ 244 (461)
T PRK05249 215 -------------------------------DDEISDALSYHLRDSGV-------------------TIRHNEEVEKVEG 244 (461)
T ss_pred -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEECCEEEEEEE
Confidence 01233446666667776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+++++.+++. +|. ++.+|.||.|.|.....
T Consensus 245 ~~~~~~v~~~---~g~----~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 245 GDDGVIVHLK---SGK----KIKADCLLYANGRTGNT 274 (461)
T ss_pred eCCeEEEEEC---CCC----EEEeCEEEEeecCCccc
Confidence 6666666544 554 68999999999987654
No 239
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=3.1e-06 Score=86.40 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=36.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~ 80 (455)
.++.+|+|||||+|||+||..|.+.|++|+|+|.++..+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 5678999999999999999999999999999999987653
No 240
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.10 E-value=3.5e-05 Score=79.00 Aligned_cols=103 Identities=19% Similarity=0.356 Sum_probs=76.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. |.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~--------------------- 211 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------PGE--------------------- 211 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------CcC---------------------
Confidence 4689999999999999999999999999999876431 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
...+.+.+.+.+++.|+ .++.+++|++++.
T Consensus 212 -------------------------------~~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~ 241 (462)
T PRK06416 212 -------------------------------DKEISKLAERALKKRGI-------------------KIKTGAKAKKVEQ 241 (462)
T ss_pred -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEE
Confidence 01233445566667776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+++.+.+.+. ++ +..+.+.+|.||.|.|.....
T Consensus 242 ~~~~v~v~~~---~g-g~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 242 TDDGVTVTLE---DG-GKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred eCCEEEEEEE---eC-CeeEEEEeCEEEEeeCCccCC
Confidence 7666666554 33 122378999999999976543
No 241
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=3.2e-06 Score=84.29 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=35.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP 82 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~ 82 (455)
.+|+|+|||+|||++|+.|+++|++|+|||+++.+..+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence 369999999999999999999999999999999876533
No 242
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.08 E-value=1.6e-05 Score=78.88 Aligned_cols=34 Identities=9% Similarity=0.295 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF 78 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~ 78 (455)
+|||||||+||+.+|..|.++ +.+|+|||+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 499999999999999999754 6899999987653
No 243
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.08 E-value=3.3e-05 Score=77.02 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=30.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~ 78 (455)
.+|||||||+||+.+|..|.+. ..+|+||++.+..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~ 39 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD 39 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence 4899999999999999999886 4679999987643
No 244
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.07 E-value=4.8e-05 Score=78.22 Aligned_cols=104 Identities=20% Similarity=0.323 Sum_probs=76.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.+ ..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~--------------------- 222 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------AA--------------------- 222 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------cC---------------------
Confidence 46899999999999999999999999999998754310 00
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
+ ..+.+.+.+.+++.|+ +++.+++|++++.
T Consensus 223 ------------------------------d-~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~ 252 (475)
T PRK06327 223 ------------------------------D-EQVAKEAAKAFTKQGL-------------------DIHLGVKIGEIKT 252 (475)
T ss_pred ------------------------------C-HHHHHHHHHHHHHcCc-------------------EEEeCcEEEEEEE
Confidence 0 1233445555666776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+++.+.+.+. ++++.+..+.+|.||.|.|.....
T Consensus 253 ~~~~v~v~~~---~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 253 GGKGVSVAYT---DADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred cCCEEEEEEE---eCCCceeEEEcCEEEEccCCccCC
Confidence 7666666655 332333478999999999977654
No 245
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.07 E-value=5.6e-05 Score=76.27 Aligned_cols=36 Identities=36% Similarity=0.657 Sum_probs=34.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+..||++|||+||+|..+|+.+++.|.+|.|+|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 568999999999999999999999999999999986
No 246
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.06 E-value=2e-05 Score=73.42 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=31.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
.|+|||+|+|||+++..+-..|-.|+|+|+.....
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~G 45 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIG 45 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcC
Confidence 59999999999999999998877799999998764
No 247
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.04 E-value=6.2e-05 Score=77.20 Aligned_cols=106 Identities=20% Similarity=0.312 Sum_probs=76.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~ 121 (455)
...+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+. +++
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------~~~-------------------- 213 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------PGT-------------------- 213 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------CCC--------------------
Confidence 34689999999999999999999999999999865431 010
Q ss_pred ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (455)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~ 201 (455)
+ ..+.+.+.+.+++.|+ +++.+++|.+++
T Consensus 214 -------------------------------d-~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~ 242 (466)
T PRK06115 214 -------------------------------D-TETAKTLQKALTKQGM-------------------KFKLGSKVTGAT 242 (466)
T ss_pred -------------------------------C-HHHHHHHHHHHHhcCC-------------------EEEECcEEEEEE
Confidence 0 1233445666677776 999999999998
Q ss_pred ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
.+++++.+.+...++|+ ...+.+|.||.|.|.....
T Consensus 243 ~~~~~v~v~~~~~~~g~--~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 243 AGADGVSLTLEPAAGGA--AETLQADYVLVAIGRRPYT 278 (466)
T ss_pred EcCCeEEEEEEEcCCCc--eeEEEeCEEEEccCCcccc
Confidence 76666655554222232 2378999999999976543
No 248
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.04 E-value=6e-05 Score=77.33 Aligned_cols=103 Identities=14% Similarity=0.282 Sum_probs=74.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+. |..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~--------------------- 205 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------PRE--------------------- 205 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------Ccc---------------------
Confidence 4689999999999999999999999999999875431 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
...+...+.+.+++.|+ +++.+++|++++.
T Consensus 206 -------------------------------d~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~ 235 (463)
T TIGR02053 206 -------------------------------EPEISAAVEEALAEEGI-------------------EVVTSAQVKAVSV 235 (463)
T ss_pred -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEE
Confidence 01233345556667776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+++...+.+.. ++. ..++.+|.||.|.|.....
T Consensus 236 ~~~~~~v~~~~--~~~--~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 236 RGGGKIITVEK--PGG--QGEVEADELLVATGRRPNT 268 (463)
T ss_pred cCCEEEEEEEe--CCC--ceEEEeCEEEEeECCCcCC
Confidence 65555555441 121 1378999999999976543
No 249
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.04 E-value=6.6e-05 Score=76.42 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=72.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. +..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------~~~--------------------- 196 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------PRE--------------------- 196 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------CCC---------------------
Confidence 4589999999999999999999999999999876431 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
...+.+.+.+.+++.|+ +++.+++|++++.
T Consensus 197 -------------------------------~~~~~~~~~~~l~~~GI-------------------~i~~~~~V~~i~~ 226 (438)
T PRK07251 197 -------------------------------EPSVAALAKQYMEEDGI-------------------TFLLNAHTTEVKN 226 (438)
T ss_pred -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEEe
Confidence 01233345566677776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
+++.+.+. . ++. ++.+|.||.|.|....
T Consensus 227 ~~~~v~v~-~---~g~----~i~~D~viva~G~~p~ 254 (438)
T PRK07251 227 DGDQVLVV-T---EDE----TYRFDALLYATGRKPN 254 (438)
T ss_pred cCCEEEEE-E---CCe----EEEcCEEEEeeCCCCC
Confidence 65554443 2 343 7899999999997654
No 250
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.02 E-value=7.1e-05 Score=76.84 Aligned_cols=104 Identities=23% Similarity=0.393 Sum_probs=75.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+- |..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------~~~--------------------- 211 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------PNE--------------------- 211 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------Ccc---------------------
Confidence 3589999999999999999999999999999765431 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
-..+.+.+.+.+++.|+ +++.+++|++++.
T Consensus 212 -------------------------------d~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~ 241 (466)
T PRK07818 212 -------------------------------DAEVSKEIAKQYKKLGV-------------------KILTGTKVESIDD 241 (466)
T ss_pred -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEE
Confidence 01233446666777776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+++.+.+.+.. .+|+ ..++.+|.||.|.|.....
T Consensus 242 ~~~~~~v~~~~-~~g~--~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 242 NGSKVTVTVSK-KDGK--AQELEADKVLQAIGFAPRV 275 (466)
T ss_pred eCCeEEEEEEe-cCCC--eEEEEeCEEEECcCcccCC
Confidence 65555554431 1332 2378999999999976654
No 251
>PRK06370 mercuric reductase; Validated
Probab=98.02 E-value=6.8e-05 Score=76.91 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=74.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+. +..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~--------------------- 210 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------PRE--------------------- 210 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------ccc---------------------
Confidence 4689999999999999999999999999999876431 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
-..+.+.+.+.+++.|+ +++.+++|++++.
T Consensus 211 -------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~ 240 (463)
T PRK06370 211 -------------------------------DEDVAAAVREILEREGI-------------------DVRLNAECIRVER 240 (463)
T ss_pred -------------------------------CHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEE
Confidence 01233445566677776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+++...+.+...+++ .++.+|.||.|.|.....
T Consensus 241 ~~~~~~v~~~~~~~~----~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 241 DGDGIAVGLDCNGGA----PEITGSHILVAVGRVPNT 273 (463)
T ss_pred cCCEEEEEEEeCCCc----eEEEeCEEEECcCCCcCC
Confidence 666555544321122 368999999999976543
No 252
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.02 E-value=5.4e-06 Score=85.68 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=34.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
+||+|||||++||++|..|+++|++|+|+||+..+.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 36 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG 36 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence 699999999999999999999999999999998764
No 253
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=1.7e-05 Score=79.12 Aligned_cols=150 Identities=16% Similarity=0.240 Sum_probs=82.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCcccccCh----hHHHHHHhhhchHHHHHhcCCCcccc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINN----RYALVFRKLDGLAEEIERSQPPVDLW 115 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~-~~~~~~~~l~~----~~~~~l~~~~gl~~~l~~~~~~~~~~ 115 (455)
+..|||+|||||-||+-+|++.+|.|.++.|+--+..- ..-.|.-.|.. ..++-++.+.|+--...+...
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~----- 76 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAG----- 76 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcC-----
Confidence 34699999999999999999999999999988876432 11111111110 011222233344333322111
Q ss_pred cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (455)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~ 195 (455)
-++.......|..+.. .-..++|....+.+.+.++.... ..+ +..
T Consensus 77 IQ~r~LN~sKGPAVra----------------~RaQaDk~~Y~~~mk~~le~~~N------------------L~l-~q~ 121 (621)
T COG0445 77 IQFRMLNSSKGPAVRA----------------PRAQADKWLYRRAMKNELENQPN------------------LHL-LQG 121 (621)
T ss_pred CchhhccCCCcchhcc----------------hhhhhhHHHHHHHHHHHHhcCCC------------------cee-hHh
Confidence 0111111112221111 11345566666666666665442 233 455
Q ss_pred EEEEeeecCCc-eE-EEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 196 ECVSVSATDQC-IN-VIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 196 ~v~~i~~~~~~-~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
.|+++..+++. +. |.+. +|. .+.|+.||.++|.+-
T Consensus 122 ~v~dli~e~~~~v~GV~t~---~G~----~~~a~aVVlTTGTFL 158 (621)
T COG0445 122 EVEDLIVEEGQRVVGVVTA---DGP----EFHAKAVVLTTGTFL 158 (621)
T ss_pred hhHHHhhcCCCeEEEEEeC---CCC----eeecCEEEEeecccc
Confidence 66777665543 44 5555 776 889999999999764
No 254
>PRK07846 mycothione reductase; Reviewed
Probab=98.00 E-value=6.6e-05 Score=76.60 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=27.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+|||+||||||+|..+|.. +.|.+|.|+|+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 4899999999999988866 4699999999853
No 255
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.00 E-value=9e-06 Score=83.17 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=44.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC------------cc----cccChhHHHHHHhhhchHHH
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP------------QA----HFINNRYALVFRKLDGLAEE 104 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~------------~~----~~l~~~~~~~l~~~~gl~~~ 104 (455)
+|+|||||++||++|+.|+++|++|+|||+.+.+..+. .| ....++.+++++++ |+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-g~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKEL-NIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHc-CCccc
Confidence 59999999999999999999999999999997654211 11 11136677888888 77543
No 256
>PRK06116 glutathione reductase; Validated
Probab=97.99 E-value=7.2e-05 Score=76.44 Aligned_cols=100 Identities=19% Similarity=0.301 Sum_probs=75.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||++|+-+|..|++.|.+|+++++.+.+. . .+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------~---~~--------------------- 206 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL----------------R---GF--------------------- 206 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc----------------c---cc---------------------
Confidence 4689999999999999999999999999999875431 0 00
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
-..+.+.+.+.+++.|+ +++.+++|.+++.
T Consensus 207 -------------------------------~~~~~~~l~~~L~~~GV-------------------~i~~~~~V~~i~~ 236 (450)
T PRK06116 207 -------------------------------DPDIRETLVEEMEKKGI-------------------RLHTNAVPKAVEK 236 (450)
T ss_pred -------------------------------CHHHHHHHHHHHHHCCc-------------------EEECCCEEEEEEE
Confidence 01233445566677776 9999999999987
Q ss_pred cCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
++++ +.+.+. +|. ++.+|.||.|.|.....
T Consensus 237 ~~~g~~~v~~~---~g~----~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 237 NADGSLTLTLE---DGE----TLTVDCLIWAIGREPNT 267 (450)
T ss_pred cCCceEEEEEc---CCc----EEEeCEEEEeeCCCcCC
Confidence 6554 555554 554 78999999999976544
No 257
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.98 E-value=7e-06 Score=82.84 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=38.9
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCc
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ 83 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~ 83 (455)
|+.++||+|||+|++|+.+|..|++.|.+|+++||++..+...+
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 35689999999999999999999999999999999987754333
No 258
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.98 E-value=8.8e-05 Score=75.94 Aligned_cols=101 Identities=20% Similarity=0.339 Sum_probs=73.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. ++.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------~~~--------------------- 209 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------PGE--------------------- 209 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------ccc---------------------
Confidence 4689999999999999999999999999999875431 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
-.++.+.+.+.+++.|+ +++.+++|++++.
T Consensus 210 -------------------------------d~e~~~~l~~~L~~~GI-------------------~i~~~~~V~~i~~ 239 (458)
T PRK06912 210 -------------------------------DEDIAHILREKLENDGV-------------------KIFTGAALKGLNS 239 (458)
T ss_pred -------------------------------cHHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEE
Confidence 01234445666777776 9999999999986
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
++..+.+. . ++. ..++.+|+||.|.|....+
T Consensus 240 ~~~~v~~~-~---~g~--~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 240 YKKQALFE-Y---EGS--IQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred cCCEEEEE-E---CCc--eEEEEeCEEEEecCCccCC
Confidence 55543332 1 332 2368999999999977654
No 259
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.97 E-value=6.9e-05 Score=76.96 Aligned_cols=104 Identities=19% Similarity=0.315 Sum_probs=74.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+. |.+.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------~~~d-------------------- 214 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------PAAD-------------------- 214 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------CcCC--------------------
Confidence 3689999999999999999999999999999876531 0000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
..+.+.+.+.+++. + .++.+++|+.++.
T Consensus 215 --------------------------------~~~~~~~~~~l~~~-v-------------------~i~~~~~v~~i~~ 242 (471)
T PRK06467 215 --------------------------------KDIVKVFTKRIKKQ-F-------------------NIMLETKVTAVEA 242 (471)
T ss_pred --------------------------------HHHHHHHHHHHhhc-e-------------------EEEcCCEEEEEEE
Confidence 12233344444444 4 8889999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR 240 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr 240 (455)
.++.+.+.+. ++++...++.+|.||.|.|......
T Consensus 243 ~~~~~~v~~~---~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 243 KEDGIYVTME---GKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred cCCEEEEEEE---eCCCcceEEEeCEEEEeecccccCC
Confidence 6666666554 3322224689999999999876543
No 260
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.97 E-value=7.8e-06 Score=84.53 Aligned_cols=36 Identities=33% Similarity=0.578 Sum_probs=33.9
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
.||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999998764
No 261
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.4e-05 Score=75.18 Aligned_cols=112 Identities=21% Similarity=0.362 Sum_probs=75.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVL-EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~-Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~ 119 (455)
...|||+||||||||.++|++.+|.|++.-|+ ||- .| +.|+.+ ++...+ +
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerf-------GG--------QvldT~-~IENfI---s---------- 259 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERF-------GG--------QVLDTM-GIENFI---S---------- 259 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhh-------CC--------eecccc-chhhee---c----------
Confidence 34699999999999999999999999986433 321 11 223333 332100 0
Q ss_pred EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (455)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 199 (455)
.-...-.+|...|.++++++.+ .+..-.+.++
T Consensus 260 -----------------------------v~~teGpkl~~ale~Hv~~Y~v-------------------Dimn~qra~~ 291 (520)
T COG3634 260 -----------------------------VPETEGPKLAAALEAHVKQYDV-------------------DVMNLQRASK 291 (520)
T ss_pred -----------------------------cccccchHHHHHHHHHHhhcCc-------------------hhhhhhhhhc
Confidence 0011235788889999988876 5555566666
Q ss_pred eeec---CCceEEEEEeccCCcceeEEEEeCEEEeecCCC
Q 012845 200 VSAT---DQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (455)
Q Consensus 200 i~~~---~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~ 236 (455)
++.. ++-+.|++. +|. ..+++-||.++|+.
T Consensus 292 l~~a~~~~~l~ev~l~---nGa----vLkaktvIlstGAr 324 (520)
T COG3634 292 LEPAAVEGGLIEVELA---NGA----VLKARTVILATGAR 324 (520)
T ss_pred ceecCCCCccEEEEec---CCc----eeccceEEEecCcc
Confidence 6553 555778887 776 78999999999964
No 262
>PLN02576 protoporphyrinogen oxidase
Probab=97.96 E-value=9.1e-06 Score=84.15 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=35.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFST 80 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~~~ 80 (455)
..+||+|||||++||++|+.|++. |++|+|+|+++....
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 457999999999999999999999 999999999987643
No 263
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.94 E-value=0.00012 Score=75.26 Aligned_cols=103 Identities=20% Similarity=0.416 Sum_probs=73.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. |..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------~~~--------------------- 219 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------PTE--------------------- 219 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------CcC---------------------
Confidence 4689999999999999999999999999999876431 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
...+.+.+.+.+++.|+ +++.+++|++++.
T Consensus 220 -------------------------------~~~~~~~l~~~l~~~gI-------------------~i~~~~~v~~i~~ 249 (472)
T PRK05976 220 -------------------------------DAELSKEVARLLKKLGV-------------------RVVTGAKVLGLTL 249 (472)
T ss_pred -------------------------------CHHHHHHHHHHHHhcCC-------------------EEEeCcEEEEEEE
Confidence 01233445566667776 9999999999975
Q ss_pred -cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 -TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 -~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
.++++.+... .+|+ .+.+.+|.||.|.|.....
T Consensus 250 ~~~~~~~~~~~--~~g~--~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 250 KKDGGVLIVAE--HNGE--EKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred ecCCCEEEEEE--eCCc--eEEEEeCEEEEeeCCccCC
Confidence 2334433221 1443 2368999999999976543
No 264
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.93 E-value=1.1e-05 Score=75.30 Aligned_cols=36 Identities=25% Similarity=0.593 Sum_probs=33.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+++||+|||||+||++||+.|+++|.++.|+-+...
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 479999999999999999999999999999998754
No 265
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.93 E-value=0.00017 Score=73.64 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+|||+|||+||+|..+|. ++.|.+|.|+|+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence 589999999999998864 45799999999853
No 266
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.93 E-value=1.3e-05 Score=82.34 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=45.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCc------cc----------ccChhHHHHHHhhhchHHHH
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ------AH----------FINNRYALVFRKLDGLAEEI 105 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~------~~----------~l~~~~~~~l~~~~gl~~~l 105 (455)
+|+|||||++||++|+.|+++|++|+|+|+++.+..+.+ +. ...++..++++++ |+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~l-g~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKV-GAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHc-CCcccc
Confidence 589999999999999999999999999999987642111 11 1225567777777 776554
No 267
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.92 E-value=0.00011 Score=75.05 Aligned_cols=100 Identities=19% Similarity=0.365 Sum_probs=74.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. +++.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~d-------------------- 206 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------RGFD-------------------- 206 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------cccC--------------------
Confidence 4579999999999999999999999999999865430 0110
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
.++.+.+.+.+++.|+ +++.+++|.+++.
T Consensus 207 --------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~ 235 (446)
T TIGR01424 207 --------------------------------DDMRALLARNMEGRGI-------------------RIHPQTSLTSITK 235 (446)
T ss_pred --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence 1233345566677776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
.+++..+.+. +++ ++.+|.||.|.|.....
T Consensus 236 ~~~~~~v~~~---~g~----~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 236 TDDGLKVTLS---HGE----EIVADVVLFATGRSPNT 265 (446)
T ss_pred cCCeEEEEEc---CCc----EeecCEEEEeeCCCcCC
Confidence 6666656554 554 78999999999976543
No 268
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.92 E-value=9.5e-05 Score=75.46 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=74.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+. +++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------~~~--------------------- 205 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------RSF--------------------- 205 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------ccc---------------------
Confidence 4689999999999999999999999999999876431 011
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
+ ..+.+.+.+.+++.|+ +++.+++|++++.
T Consensus 206 ------------------------------d-~~~~~~~~~~l~~~gI-------------------~i~~~~~v~~i~~ 235 (450)
T TIGR01421 206 ------------------------------D-SMISETITEEYEKEGI-------------------NVHKLSKPVKVEK 235 (450)
T ss_pred ------------------------------C-HHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEEE
Confidence 0 1234445666677776 9999999999986
Q ss_pred cCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
++++ ..+.+. ++. ..+.+|.||.|.|.....
T Consensus 236 ~~~~~~~v~~~---~g~---~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 236 TVEGKLVIHFE---DGK---SIDDVDELIWAIGRKPNT 267 (450)
T ss_pred eCCceEEEEEC---CCc---EEEEcCEEEEeeCCCcCc
Confidence 5443 445544 442 268999999999977654
No 269
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.90 E-value=1.2e-05 Score=79.16 Aligned_cols=36 Identities=36% Similarity=0.569 Sum_probs=33.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
+||+|||||++|+++|..|++.|.+|+|+|+++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 699999999999999999999999999999986553
No 270
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.89 E-value=1e-05 Score=83.87 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=32.4
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 46 VvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
|+|||||++||++|..|++.|++|+|+|++..+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence 6999999999999999999999999999998875
No 271
>PLN02507 glutathione reductase
Probab=97.89 E-value=0.00014 Score=75.22 Aligned_cols=100 Identities=12% Similarity=0.284 Sum_probs=75.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||+.|+-+|..|++.|.+|+|+++.+.+- +++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~--------------------- 242 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------RGF--------------------- 242 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------ccc---------------------
Confidence 4689999999999999999999999999999875431 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
+ ..+.+.+.+.+++.|+ +++.+++|++++.
T Consensus 243 ------------------------------d-~~~~~~l~~~l~~~GI-------------------~i~~~~~V~~i~~ 272 (499)
T PLN02507 243 ------------------------------D-DEMRAVVARNLEGRGI-------------------NLHPRTNLTQLTK 272 (499)
T ss_pred ------------------------------C-HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEE
Confidence 0 1233445556667776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
.++++.+... +|. ++.+|.||.|.|.....
T Consensus 273 ~~~~~~v~~~---~g~----~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 273 TEGGIKVITD---HGE----EFVADVVLFATGRAPNT 302 (499)
T ss_pred eCCeEEEEEC---CCc----EEEcCEEEEeecCCCCC
Confidence 6666655543 554 68999999999977654
No 272
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.88 E-value=1.3e-05 Score=87.73 Aligned_cols=37 Identities=32% Similarity=0.557 Sum_probs=34.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..++|+||||||||+++|+.|++.|++|+|||+.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 4579999999999999999999999999999998765
No 273
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.87 E-value=0.00016 Score=74.23 Aligned_cols=100 Identities=17% Similarity=0.286 Sum_probs=75.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.+ ..
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~--------------------- 216 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------GE--------------------- 216 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------CC---------------------
Confidence 35899999999999999999999999999998654310 00
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
+ ..+...+.+.+++.|+ +++.+++|.+++.
T Consensus 217 ------------------------------d-~~~~~~l~~~L~~~gV-------------------~i~~~~~v~~v~~ 246 (466)
T PRK07845 217 ------------------------------D-ADAAEVLEEVFARRGM-------------------TVLKRSRAESVER 246 (466)
T ss_pred ------------------------------C-HHHHHHHHHHHHHCCc-------------------EEEcCCEEEEEEE
Confidence 0 1233445666677776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+++++.+.+. +|+ .+.+|.||.|.|.....
T Consensus 247 ~~~~~~v~~~---~g~----~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 247 TGDGVVVTLT---DGR----TVEGSHALMAVGSVPNT 276 (466)
T ss_pred eCCEEEEEEC---CCc----EEEecEEEEeecCCcCC
Confidence 6666666554 554 68999999999987654
No 274
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.86 E-value=5.4e-05 Score=76.30 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=37.1
Q ss_pred ccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhh
Q 012845 187 QGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR 240 (455)
Q Consensus 187 ~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr 240 (455)
.+.+|+++++|++|+.+++++.+++. +|+ ++.+|.||.|.......+
T Consensus 222 ~g~~i~l~~~V~~I~~~~~~v~v~~~---~g~----~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 222 LGGEIRLNTPVTRIEREDGGVTVTTE---DGE----TIEADAVISAVPPSVLKN 268 (450)
T ss_dssp HGGGEESSEEEEEEEEESSEEEEEET---TSS----EEEESEEEE-S-HHHHHT
T ss_pred cCceeecCCcceeccccccccccccc---cce----EEecceeeecCchhhhhh
Confidence 34589999999999999999888887 776 889999999988555443
No 275
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.86 E-value=0.0021 Score=59.71 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=31.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKAFST 80 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g-------~~V~l~Er~~~~~~ 80 (455)
+..+|+|||+|+.||+.|+.+.+.. .+|+|++-+..+..
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T 47 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDT 47 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcccc
Confidence 3468999999999999998887743 67999987766543
No 276
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.86 E-value=7.2e-05 Score=81.62 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=31.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF 78 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~ 78 (455)
+.+|||||+|+||+.+|..|.+. +++|+||++.+.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 34899999999999999999764 5899999988765
No 277
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.85 E-value=0.00021 Score=72.89 Aligned_cols=99 Identities=15% Similarity=0.288 Sum_probs=73.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+... |..
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~--------------------- 197 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------PRE--------------------- 197 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------CCc---------------------
Confidence 4589999999999999999999999999999865321 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
+ ..+.+.+.+.+++.|+ +++.+++|.+++.
T Consensus 198 ------------------------------~-~~~~~~l~~~l~~~gV-------------------~v~~~~~v~~i~~ 227 (441)
T PRK08010 198 ------------------------------D-RDIADNIATILRDQGV-------------------DIILNAHVERISH 227 (441)
T ss_pred ------------------------------C-HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEE
Confidence 0 1233446667777786 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+++.+.+... ++ .+.+|.||.|.|.....
T Consensus 228 ~~~~v~v~~~---~g-----~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 228 HENQVQVHSE---HA-----QLAVDALLIASGRQPAT 256 (441)
T ss_pred cCCEEEEEEc---CC-----eEEeCEEEEeecCCcCC
Confidence 6655544432 33 57899999999987653
No 278
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.83 E-value=0.00019 Score=72.78 Aligned_cols=98 Identities=18% Similarity=0.389 Sum_probs=71.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||++|+-+|..|++.|.+|+++++.+.+. . . .+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~--------~-------~---~~--------------------- 177 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL--------N-------K---LF--------------------- 177 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC--------c-------c---cc---------------------
Confidence 3589999999999999999999999999999875430 0 0 00
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
+ ..+.+.+.+.+++.|+ +++.+++|.+++.
T Consensus 178 ------------------------------~-~~~~~~~~~~l~~~gV-------------------~v~~~~~v~~i~~ 207 (427)
T TIGR03385 178 ------------------------------D-EEMNQIVEEELKKHEI-------------------NLRLNEEVDSIEG 207 (427)
T ss_pred ------------------------------C-HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEec
Confidence 0 1234446666677776 8999999999976
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
++. + +.+. +|. ++.+|.||.|.|....
T Consensus 208 ~~~-~-v~~~---~g~----~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 208 EER-V-KVFT---SGG----VYQADMVILATGIKPN 234 (427)
T ss_pred CCC-E-EEEc---CCC----EEEeCEEEECCCccCC
Confidence 432 2 3333 554 7899999999997643
No 279
>PRK07846 mycothione reductase; Reviewed
Probab=97.82 E-value=0.00017 Score=73.55 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=32.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 46899999999999999999999999999998754
No 280
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.78 E-value=7.8e-05 Score=81.18 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 012845 46 VLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF 78 (455)
Q Consensus 46 VvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~ 78 (455)
|||||||+||+.+|..|.+. +++|+|||+.+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 69999999999999998775 5789999988765
No 281
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.77 E-value=0.00025 Score=72.38 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=31.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 35899999999999999999999999999987643
No 282
>PLN02785 Protein HOTHEAD
Probab=97.77 E-value=4.1e-05 Score=80.27 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=45.1
Q ss_pred ccccccccCCCCCc-cccccc-CCCcccccCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 12 CFSRIKTFPYPYGY-TQCRAL-SDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 12 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
|=....+..||.+. .+..+. +++.+.+-....||++|||||.||+.+|..|++ +.+|+|||+...+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~~ 89 (587)
T PLN02785 22 GKSHFTPYRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGVP 89 (587)
T ss_pred ccccCCccCCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCCC
Confidence 33445566676662 222222 222222223457999999999999999999999 6999999998743
No 283
>PRK14694 putative mercuric reductase; Provisional
Probab=97.77 E-value=0.00026 Score=72.73 Aligned_cols=98 Identities=17% Similarity=0.301 Sum_probs=71.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||+|+.|+-+|..|++.|.+|+|+++..... ..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~--------------------~~--------------------- 216 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS--------------------QE--------------------- 216 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC--------------------CC---------------------
Confidence 4689999999999999999999999999998632110 00
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
...+.+.+.+.+++.|+ +++.+++|.+++.
T Consensus 217 -------------------------------~~~~~~~l~~~l~~~GI-------------------~v~~~~~v~~i~~ 246 (468)
T PRK14694 217 -------------------------------DPAVGEAIEAAFRREGI-------------------EVLKQTQASEVDY 246 (468)
T ss_pred -------------------------------CHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEE
Confidence 01233446666677776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+++.+.+... ++ ++.+|.||.|.|.....
T Consensus 247 ~~~~~~v~~~---~~-----~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 247 NGREFILETN---AG-----TLRAEQLLVATGRTPNT 275 (468)
T ss_pred cCCEEEEEEC---CC-----EEEeCEEEEccCCCCCc
Confidence 6554444322 33 68999999999987654
No 284
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.77 E-value=7.6e-05 Score=72.06 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=94.9
Q ss_pred cCCcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccc
Q 012845 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK 117 (455)
Q Consensus 39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~ 117 (455)
||+..+|++.||-||+-|++|+.|..++ .++..+||.+..+.+... .+....++. -+..+|.....|...+..
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGm-llegstlQv-----~FlkDLVTl~~PTs~ySF 74 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGM-LLEGSTLQV-----PFLKDLVTLVDPTSPYSF 74 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCc-ccCCccccc-----cchhhhccccCCCCchHH
Confidence 3567899999999999999999999985 789999999988766542 222111111 122333333333322221
Q ss_pred eEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEE
Q 012845 118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (455)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v 197 (455)
.-+. ...++..... .....++.|.+..+++.-.+.... .++++.+|
T Consensus 75 LNYL-~~h~RLy~Fl-------------~~e~f~i~R~Ey~dY~~Waa~~l~--------------------~~rfg~~V 120 (436)
T COG3486 75 LNYL-HEHGRLYEFL-------------NYETFHIPRREYNDYCQWAASQLP--------------------SLRFGEEV 120 (436)
T ss_pred HHHH-HHcchHhhhh-------------hhhcccccHHHHHHHHHHHHhhCC--------------------ccccCCee
Confidence 1110 1122221111 223467889999999999988875 79999999
Q ss_pred EEeeecC-CceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 198 VSVSATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 198 ~~i~~~~-~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+.|..-+ +.....+.-..+++ .++|+-||...|..-.+
T Consensus 121 ~~i~~~~~d~~~~~~~~t~~~~----~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 121 TDISSLDGDAVVRLFVVTANGT----VYRARNLVLGVGTQPYI 159 (436)
T ss_pred ccccccCCcceeEEEEEcCCCc----EEEeeeEEEccCCCcCC
Confidence 9774322 22222111111443 78999999999965433
No 285
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.77 E-value=2.9e-05 Score=72.46 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=34.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
+|++|||+|++|+.+|..|+++|.+|+|+||+++++
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 799999999999999999999999999999999875
No 286
>PRK14727 putative mercuric reductase; Provisional
Probab=97.76 E-value=0.0003 Score=72.49 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=72.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||..|+-+|..|++.|.+|+|+++.... +.+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l--------------------~~~d-------------------- 227 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL--------------------FRED-------------------- 227 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------Ccch--------------------
Confidence 368999999999999999999999999999864211 0000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
..+.+.+.+.+++.|+ +++.+++|++++.
T Consensus 228 --------------------------------~~~~~~l~~~L~~~GV-------------------~i~~~~~V~~i~~ 256 (479)
T PRK14727 228 --------------------------------PLLGETLTACFEKEGI-------------------EVLNNTQASLVEH 256 (479)
T ss_pred --------------------------------HHHHHHHHHHHHhCCC-------------------EEEcCcEEEEEEE
Confidence 1233445666677776 8999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+++.+.+... ++ ++.+|.||.|.|.....
T Consensus 257 ~~~~~~v~~~---~g-----~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 257 DDNGFVLTTG---HG-----ELRAEKLLISTGRHANT 285 (479)
T ss_pred eCCEEEEEEc---CC-----eEEeCEEEEccCCCCCc
Confidence 6665555432 33 57899999999988754
No 287
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.76 E-value=0.00021 Score=77.90 Aligned_cols=98 Identities=19% Similarity=0.418 Sum_probs=72.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+ +.. .+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l----------------l~~--~l---------------------- 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL----------------MAK--QL---------------------- 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch----------------hhh--hc----------------------
Confidence 57999999999999999999999999999976432 000 00
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~ 203 (455)
+ ..+.+.+.+.+++.|+ +++.++.++++..+
T Consensus 181 -----------------------------d-~~~~~~l~~~l~~~GV-------------------~v~~~~~v~~i~~~ 211 (785)
T TIGR02374 181 -----------------------------D-QTAGRLLQRELEQKGL-------------------TFLLEKDTVEIVGA 211 (785)
T ss_pred -----------------------------C-HHHHHHHHHHHHHcCC-------------------EEEeCCceEEEEcC
Confidence 0 1233445566677786 99999999998765
Q ss_pred CCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
+....+++. +|+ .+.+|+||.|.|...
T Consensus 212 ~~~~~v~~~---dG~----~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 212 TKADRIRFK---DGS----SLEADLIVMAAGIRP 238 (785)
T ss_pred CceEEEEEC---CCC----EEEcCEEEECCCCCc
Confidence 443445555 665 789999999999764
No 288
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.76 E-value=3e-05 Score=76.02 Aligned_cols=38 Identities=26% Similarity=0.551 Sum_probs=35.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
...+|+|||||+||+++|+.|++.|++|.|+||.+...
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 45689999999999999999999999999999999875
No 289
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.75 E-value=0.00016 Score=71.36 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~ 78 (455)
.+.+|||||||-+|+.+|..|.++- .+|+++||+...
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 3568999999999999999999984 899999998764
No 290
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.74 E-value=2.9e-05 Score=83.83 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=32.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
...+|+||||||||+++|+.|++.|++|+|||+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 46789999999999999999999999999999863
No 291
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.73 E-value=2.8e-05 Score=74.73 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=30.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF 78 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~ 78 (455)
||+||||+|++|+.+|..|++.| .+|+|+|+.+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 79999999999999999999997 799999999754
No 292
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.72 E-value=4e-05 Score=78.17 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=34.7
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...++|+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 35689999999999999999999999999999998654
No 293
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.72 E-value=0.00041 Score=71.39 Aligned_cols=102 Identities=14% Similarity=0.183 Sum_probs=73.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||+.|+-+|..|++.|.+|+|+++. .+. +.+.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------~~~d-------------------- 219 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-------------------RGFD-------------------- 219 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-------------------cccC--------------------
Confidence 357999999999999999999999999999863 210 0110
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
..+.+.+.+.+++.|+ .++.++.+..++.
T Consensus 220 --------------------------------~~~~~~l~~~L~~~gV-------------------~i~~~~~v~~v~~ 248 (484)
T TIGR01438 220 --------------------------------QDCANKVGEHMEEHGV-------------------KFKRQFVPIKVEQ 248 (484)
T ss_pred --------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCceEEEEEE
Confidence 1233445666677776 9999999999887
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
.++.+.+.+. +++. ..++.+|.||.|.|.....
T Consensus 249 ~~~~~~v~~~---~~~~-~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 249 IEAKVKVTFT---DSTN-GIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred cCCeEEEEEe---cCCc-ceEEEeCEEEEEecCCcCC
Confidence 6555555554 4321 1368999999999976543
No 294
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.71 E-value=0.00035 Score=72.26 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=72.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
.+|+|||||+.|+-+|..|++.|.+|+|+++. .+. . .+.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l----------------~---~~d--------------------- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL----------------R---GFD--------------------- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc----------------c---cCC---------------------
Confidence 48999999999999999999999999999863 210 0 010
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~ 203 (455)
..+.+.+.+.+++.|+ +++.++++..++..
T Consensus 222 -------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~v~~~ 251 (499)
T PTZ00052 222 -------------------------------RQCSEKVVEYMKEQGT-------------------LFLEGVVPINIEKM 251 (499)
T ss_pred -------------------------------HHHHHHHHHHHHHcCC-------------------EEEcCCeEEEEEEc
Confidence 1233445566677776 89999999988765
Q ss_pred CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
++...+.+. +|. ++.+|.||.|.|.....
T Consensus 252 ~~~~~v~~~---~g~----~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 252 DDKIKVLFS---DGT----TELFDTVLYATGRKPDI 280 (499)
T ss_pred CCeEEEEEC---CCC----EEEcCEEEEeeCCCCCc
Confidence 555555554 554 67899999999987654
No 295
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.71 E-value=0.00034 Score=71.94 Aligned_cols=100 Identities=21% Similarity=0.280 Sum_probs=73.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~ 119 (455)
..+|+|||||+.|+-+|..|+.. |.+|+|+|+.+.+. +.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------~~~------------------ 229 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------RGF------------------ 229 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------ccc------------------
Confidence 46899999999999999877554 99999999876531 000
Q ss_pred EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (455)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 199 (455)
+ ..+.+.+.+.+++.|+ +++.++.|++
T Consensus 230 ---------------------------------d-~~~~~~l~~~L~~~GI-------------------~i~~~~~v~~ 256 (486)
T TIGR01423 230 ---------------------------------D-STLRKELTKQLRANGI-------------------NIMTNENPAK 256 (486)
T ss_pred ---------------------------------C-HHHHHHHHHHHHHcCC-------------------EEEcCCEEEE
Confidence 0 1344556666777776 9999999999
Q ss_pred eeecCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 200 VSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 200 i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
++.++++ ..+.+. ++. .+.+|.||.|.|.....
T Consensus 257 i~~~~~~~~~v~~~---~g~----~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 257 VTLNADGSKHVTFE---SGK----TLDVDVVMMAIGRVPRT 290 (486)
T ss_pred EEEcCCceEEEEEc---CCC----EEEcCEEEEeeCCCcCc
Confidence 9865444 345444 454 78999999999977654
No 296
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.70 E-value=0.00035 Score=71.13 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 5899999999999999999999999999998754
No 297
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.70 E-value=0.00034 Score=70.31 Aligned_cols=98 Identities=27% Similarity=0.446 Sum_probs=75.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
.+|+|||+|++|+.+|..|+++|++|+++|+.+.+.....
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~---------------------------------------- 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL---------------------------------------- 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh----------------------------------------
Confidence 6999999999999999999999999999999876520000
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~ 203 (455)
. ..+.+.+.+.+++.|+ .++.+..++.++..
T Consensus 177 -----------------------------~-~~~~~~~~~~l~~~gi-------------------~~~~~~~~~~i~~~ 207 (415)
T COG0446 177 -----------------------------D-PEVAEELAELLEKYGV-------------------ELLLGTKVVGVEGK 207 (415)
T ss_pred -----------------------------h-HHHHHHHHHHHHHCCc-------------------EEEeCCceEEEEcc
Confidence 0 2445556677777776 89999999999987
Q ss_pred CCceE---EEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 204 DQCIN---VIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 204 ~~~~~---v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
++... +... ++. .+.+|+++.+.|..-
T Consensus 208 ~~~~~~~~~~~~---~~~----~~~~d~~~~~~g~~p 237 (415)
T COG0446 208 GNTLVVERVVGI---DGE----EIKADLVIIGPGERP 237 (415)
T ss_pred cCcceeeEEEEe---CCc----EEEeeEEEEeecccc
Confidence 66543 2333 443 789999999998654
No 298
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.69 E-value=4.2e-05 Score=81.80 Aligned_cols=37 Identities=30% Similarity=0.559 Sum_probs=34.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4579999999999999999999999999999998765
No 299
>PRK02106 choline dehydrogenase; Validated
Probab=97.69 E-value=4.2e-05 Score=80.29 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=34.8
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCC
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKA 77 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~-~g~~V~l~Er~~~ 77 (455)
+...+|++|||||++|+.+|..|++ .|++|+|||+.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4567999999999999999999999 7999999999964
No 300
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00016 Score=70.91 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=32.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..+|||||||||=||+-+|.+.+|.|-+.+++-.+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 468999999999999999999999999988887664
No 301
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.67 E-value=0.00047 Score=70.43 Aligned_cols=35 Identities=17% Similarity=0.457 Sum_probs=32.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 46899999999999999999999999999998653
No 302
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.66 E-value=0.00058 Score=70.02 Aligned_cols=37 Identities=30% Similarity=0.605 Sum_probs=33.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+|+|||||+.|+-+|..|++.|.+|+|+|+.+..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 3468999999999999999999999999999987543
No 303
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.66 E-value=5.1e-05 Score=76.41 Aligned_cols=38 Identities=29% Similarity=0.296 Sum_probs=33.2
Q ss_pred cccCEEEECCCHHHHHHHHHH-HhCCCCEEEEcCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILL-TKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~L-a~~g~~V~l~Er~~~~~ 79 (455)
...+|+||||||||+.+|..| ++.|++|+||||.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 346799999999999999976 56799999999998874
No 304
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.65 E-value=4.9e-05 Score=84.48 Aligned_cols=38 Identities=32% Similarity=0.485 Sum_probs=34.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
...+|+|||||||||++|..|++.|++|+|||+.+.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 35799999999999999999999999999999987653
No 305
>PRK13748 putative mercuric reductase; Provisional
Probab=97.65 E-value=0.00044 Score=72.80 Aligned_cols=98 Identities=16% Similarity=0.288 Sum_probs=71.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||+.|+-+|..|++.|.+|+|+++.... + ..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----------~----------~~--------------------- 308 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----------F----------RE--------------------- 308 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc----------c----------cc---------------------
Confidence 468999999999999999999999999999974211 0 00
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
-..+.+.+.+.+++.|+ +++.+++|++++.
T Consensus 309 -------------------------------d~~~~~~l~~~l~~~gI-------------------~i~~~~~v~~i~~ 338 (561)
T PRK13748 309 -------------------------------DPAIGEAVTAAFRAEGI-------------------EVLEHTQASQVAH 338 (561)
T ss_pred -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEEEe
Confidence 01233345566677776 9999999999987
Q ss_pred cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (455)
Q Consensus 203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v 239 (455)
+++.+.+... ++ .+.+|.||.|.|.....
T Consensus 339 ~~~~~~v~~~---~~-----~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 339 VDGEFVLTTG---HG-----ELRADKLLVATGRAPNT 367 (561)
T ss_pred cCCEEEEEec---CC-----eEEeCEEEEccCCCcCC
Confidence 6655444432 33 57999999999976544
No 306
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.64 E-value=5.6e-05 Score=75.81 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=32.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
++||+|||+|++|+++|+.|++.|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999874
No 307
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.63 E-value=0.0011 Score=64.83 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=79.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCCCC----CCcccccChhHHHHHHhhh-chHHHHHhcCCCcc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAFST----HPQAHFINNRYALVFRKLD-GLAEEIERSQPPVD 113 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~~~~----~~~~~~l~~~~~~~l~~~~-gl~~~l~~~~~~~~ 113 (455)
.....|+|||||.++.-++..|.+.+. +|+++=|+....+ .......+|..++.+..+| ....++.....
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~--- 264 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQR--- 264 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG---
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhH---
Confidence 456899999999999999999999875 7999999876532 2223456777776666552 11111111100
Q ss_pred cccceEEeecCCCCccccccCCCccccccccCCccccccchhh---HHHHHHHH-HHhcccccccCCCcccccccccccc
Q 012845 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK---LNKLLLKQ-LEKLNFKICTSEGTEGLHNHLLQGR 189 (455)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~---l~~~L~~~-~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (455)
..++..|+... |.+.|.+. +...+ ..
T Consensus 265 --------------------------------~~ny~~i~~~~l~~iy~~lY~~~v~g~~------------------~~ 294 (341)
T PF13434_consen 265 --------------------------------HTNYGGIDPDLLEAIYDRLYEQRVSGRG------------------RL 294 (341)
T ss_dssp --------------------------------GGTSSEB-HHHHHHHHHHHHHHHHHT---------------------S
T ss_pred --------------------------------hhcCCCCCHHHHHHHHHHHHHHHhcCCC------------------Ce
Confidence 01122343332 23333322 11111 24
Q ss_pred eEEeccEEEEeeecC-CceEEEEEeccCCcceeEEEEeCEEEeecCC
Q 012845 190 EILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCNILIGTDGA 235 (455)
Q Consensus 190 ~i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~ 235 (455)
+++-+++|++++..+ +++.+++..... +...++.+|.||.|+|.
T Consensus 295 ~l~~~~~v~~~~~~~~~~~~l~~~~~~~--~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 295 RLLPNTEVTSAEQDGDGGVRLTLRHRQT--GEEETLEVDAVILATGY 339 (341)
T ss_dssp EEETTEEEEEEEEES-SSEEEEEEETTT----EEEEEESEEEE---E
T ss_pred EEeCCCEEEEEEECCCCEEEEEEEECCC--CCeEEEecCEEEEcCCc
Confidence 889999999999888 488888874333 34568899999999994
No 308
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.63 E-value=6.4e-05 Score=77.18 Aligned_cols=37 Identities=32% Similarity=0.527 Sum_probs=34.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..++|+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999998765
No 309
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.62 E-value=0.00042 Score=75.75 Aligned_cols=99 Identities=15% Similarity=0.271 Sum_probs=72.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~ 123 (455)
..++|||||+.|+-+|..|++.|.+|+|+|+.+.. +.. .+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l----------------l~~--~l---------------------- 185 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML----------------MAE--QL---------------------- 185 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc----------------hhh--hc----------------------
Confidence 47999999999999999999999999999986532 000 00
Q ss_pred CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (455)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~ 203 (455)
+ ....+.|.+.+++.|+ +++.++.++++..+
T Consensus 186 -----------------------------d-~~~~~~l~~~L~~~GV-------------------~v~~~~~v~~I~~~ 216 (847)
T PRK14989 186 -----------------------------D-QMGGEQLRRKIESMGV-------------------RVHTSKNTLEIVQE 216 (847)
T ss_pred -----------------------------C-HHHHHHHHHHHHHCCC-------------------EEEcCCeEEEEEec
Confidence 0 1233456666777787 99999999999754
Q ss_pred CC--ceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 204 DQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 204 ~~--~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
+. ...+.+. +|+ .+.+|+||.|.|....
T Consensus 217 ~~~~~~~v~~~---dG~----~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 217 GVEARKTMRFA---DGS----ELEVDFIVFSTGIRPQ 246 (847)
T ss_pred CCCceEEEEEC---CCC----EEEcCEEEECCCcccC
Confidence 32 2334444 665 7899999999997654
No 310
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.62 E-value=5.9e-05 Score=81.97 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=33.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+|+||||||||+++|..|++.|++|+|||+.+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4679999999999999999999999999999987654
No 311
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.61 E-value=6.7e-05 Score=72.71 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=45.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCE--EEEcCCCCCCCCC-----ccc--------cc------ChhHHHHHHhhhc
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKC--SVLEKNKAFSTHP-----QAH--------FI------NNRYALVFRKLDG 100 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V--~l~Er~~~~~~~~-----~~~--------~l------~~~~~~~l~~~~g 100 (455)
...+|+|||||++||++|++|++++.+| +|||..+...... ... .+ ..+.+.++..+ |
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL-G 88 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL-G 88 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc-C
Confidence 4578999999999999999999998764 6699887543210 000 11 12466777788 8
Q ss_pred hHHHHHh
Q 012845 101 LAEEIER 107 (455)
Q Consensus 101 l~~~l~~ 107 (455)
+.+++..
T Consensus 89 l~~e~~~ 95 (491)
T KOG1276|consen 89 LEDELQP 95 (491)
T ss_pred ccceeee
Confidence 8766644
No 312
>PTZ00058 glutathione reductase; Provisional
Probab=97.58 E-value=0.00062 Score=71.03 Aligned_cols=100 Identities=14% Similarity=0.266 Sum_probs=72.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+. +.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------~~~--------------------- 276 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------RKF--------------------- 276 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------ccC---------------------
Confidence 5689999999999999999999999999999875421 000
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
+ ..+.+.+.+.+++.|+ +++.++.|.+++.
T Consensus 277 ------------------------------d-~~i~~~l~~~L~~~GV-------------------~i~~~~~V~~I~~ 306 (561)
T PTZ00058 277 ------------------------------D-ETIINELENDMKKNNI-------------------NIITHANVEEIEK 306 (561)
T ss_pred ------------------------------C-HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEe
Confidence 0 1233445566677776 9999999999986
Q ss_pred cCC-ceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 203 TDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 203 ~~~-~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
+++ ++.+... ++. .++.+|.||.|.|....
T Consensus 307 ~~~~~v~v~~~---~~~---~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 307 VKEKNLTIYLS---DGR---KYEHFDYVIYCVGRSPN 337 (561)
T ss_pred cCCCcEEEEEC---CCC---EEEECCEEEECcCCCCC
Confidence 543 3444332 322 26899999999997654
No 313
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.58 E-value=7.8e-05 Score=76.31 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=34.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
....+|+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 34579999999999999999999999999999998754
No 314
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.50 E-value=0.00011 Score=78.35 Aligned_cols=37 Identities=30% Similarity=0.519 Sum_probs=34.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+|+||||||+|+++|+.|++.|++|+|||+.+.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999998765
No 315
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.49 E-value=0.00012 Score=74.99 Aligned_cols=37 Identities=27% Similarity=0.581 Sum_probs=34.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
+..+|+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4579999999999999999999999999999998765
No 316
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.44 E-value=0.00015 Score=77.24 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=34.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 4678999999999999999999999999999998865
No 317
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00066 Score=63.71 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=32.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
...|-|||||+||.-+|+.++++|++|.|+|.++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 45699999999999999999999999999999864
No 318
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.43 E-value=0.0002 Score=71.16 Aligned_cols=34 Identities=29% Similarity=0.661 Sum_probs=31.9
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+||+|||||++|+++|+.|+++|++|.|+|+...
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 5999999999999999999999999999998753
No 319
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.42 E-value=0.00099 Score=66.51 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=50.3
Q ss_pred cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845 150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL 229 (455)
Q Consensus 150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v 229 (455)
.+++...+...|.+.+.+ |+ +++.+++|.+++.+++.+.+.+. +|. .+.+|.|
T Consensus 130 g~idp~~~~~~l~~~~~~-G~-------------------~i~~~~~V~~i~~~~~~~~v~t~---~g~----~~~a~~v 182 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RL-------------------TLHFNTEITSLERDGEGWQLLDA---NGE----VIAASVV 182 (381)
T ss_pred cccChHHHHHHHHhccCC-Cc-------------------EEEeCCEEEEEEEcCCeEEEEeC---CCC----EEEcCEE
Confidence 456777788888888877 76 99999999999987777766655 664 5799999
Q ss_pred EeecCCCch
Q 012845 230 IGTDGAGST 238 (455)
Q Consensus 230 V~AdG~~S~ 238 (455)
|.|+|.++.
T Consensus 183 V~a~G~~~~ 191 (381)
T TIGR03197 183 VLANGAQAG 191 (381)
T ss_pred EEcCCcccc
Confidence 999999985
No 320
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.40 E-value=0.0013 Score=66.75 Aligned_cols=93 Identities=23% Similarity=0.380 Sum_probs=67.5
Q ss_pred cCEEEECCCHHHHHHHHHHHh--------------CCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcC
Q 012845 44 VPVLIVGAGPVGLVLSILLTK--------------LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQ 109 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~--------------~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~ 109 (455)
..|+|||||++|+-+|..|+. .+.+|+|+|+.+.+- +.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-------------------~~~-------- 226 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-------------------GSF-------- 226 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-------------------ccC--------
Confidence 379999999999999999975 367899998765431 000
Q ss_pred CCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccc
Q 012845 110 PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR 189 (455)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (455)
+ ..+.+.+.+.+++.|+
T Consensus 227 -------------------------------------------~-~~~~~~~~~~L~~~gV------------------- 243 (424)
T PTZ00318 227 -------------------------------------------D-QALRKYGQRRLRRLGV------------------- 243 (424)
T ss_pred -------------------------------------------C-HHHHHHHHHHHHHCCC-------------------
Confidence 0 1344556666777786
Q ss_pred eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 190 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
+++.+++|+++.. +. +.+. +|+ ++.+|++|.|.|...
T Consensus 244 ~v~~~~~v~~v~~--~~--v~~~---~g~----~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 244 DIRTKTAVKEVLD--KE--VVLK---DGE----VIPTGLVVWSTGVGP 280 (424)
T ss_pred EEEeCCeEEEEeC--CE--EEEC---CCC----EEEccEEEEccCCCC
Confidence 9999999999864 22 4444 665 789999999999543
No 321
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.39 E-value=0.0021 Score=68.19 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=32.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 358999999999999999999999999999987653
No 322
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.39 E-value=0.00023 Score=70.21 Aligned_cols=38 Identities=34% Similarity=0.420 Sum_probs=34.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
....+|+|||||++|+.+|..|++.|++|+|||+.+.+
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 34569999999999999999999999999999998765
No 323
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.39 E-value=0.00025 Score=66.55 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=36.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~ 80 (455)
+...||+|||+|+|||.+|..|+.+|.+|+|+|+..+.+-
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnl 42 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNL 42 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccc
Confidence 4578999999999999999999999999999999876544
No 324
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.34 E-value=0.0018 Score=67.24 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=31.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 3589999999999999999999999999998654
No 325
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.34 E-value=0.00048 Score=67.86 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=51.8
Q ss_pred chhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEee
Q 012845 153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGT 232 (455)
Q Consensus 153 ~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~A 232 (455)
.-..+.+.|...+++.|+ +|+++++|+++ +++++.+.+. ++. ..+++|.||.|
T Consensus 84 ~A~sVv~~L~~~l~~~gV-------------------~i~~~~~V~~i--~~~~~~v~~~---~~~---~~~~a~~vIlA 136 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGV-------------------QFHTRHRWIGW--QGGTLRFETP---DGQ---STIEADAVVLA 136 (376)
T ss_pred CHHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEE--eCCcEEEEEC---CCc---eEEecCEEEEc
Confidence 456799999999999997 99999999999 3334555543 222 26899999999
Q ss_pred cCCCc-----------hhhhhcCCCcc
Q 012845 233 DGAGS-----------TVRKLVGIDLV 248 (455)
Q Consensus 233 dG~~S-----------~vr~~l~~~~~ 248 (455)
+|..| .+.+++|....
T Consensus 137 tGG~s~p~~Gs~g~gy~la~~lGh~i~ 163 (376)
T TIGR03862 137 LGGASWSQLGSDGAWQQVLDQRGVSVA 163 (376)
T ss_pred CCCccccccCCCcHHHHHHHHCCCccc
Confidence 99876 46666775544
No 326
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.33 E-value=0.00016 Score=71.13 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=34.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFST 80 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~~~ 80 (455)
....+|+|||||+|||++|..|.+.|+ +|+|+|-.+.+..
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 345689999999999999999997765 6999999887754
No 327
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.33 E-value=0.0021 Score=61.60 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=31.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..+|+|||+|++|+-+|..|++.+.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 4589999999999999999999999999999854
No 328
>PLN02546 glutathione reductase
Probab=97.33 E-value=0.0017 Score=67.71 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 46899999999999999999999999999998654
No 329
>PRK10262 thioredoxin reductase; Provisional
Probab=97.32 E-value=0.0027 Score=61.78 Aligned_cols=34 Identities=12% Similarity=0.351 Sum_probs=31.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 4689999999999999999999999999999865
No 330
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.32 E-value=0.0002 Score=72.40 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=34.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
-.+|+||||||+||++|..|++.|++|+|+|+.+.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G 159 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG 159 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence 3789999999999999999999999999999998764
No 331
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.31 E-value=0.0066 Score=60.88 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=31.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFS 79 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~~ 79 (455)
+.++=|||+|+|+|++|.+|-|- |-+|+|||+.+.+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G 42 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPG 42 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence 35678999999999999999886 57899999987653
No 332
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.31 E-value=0.00075 Score=59.37 Aligned_cols=44 Identities=27% Similarity=0.442 Sum_probs=36.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCcccccCh
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINN 89 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~~~~~l~~ 89 (455)
..||+|||+|-+||++|+..+++ +.+|.|||..-.| +.|.+|..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP---GGGaWLGG 121 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP---GGGAWLGG 121 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC---CCcccccc
Confidence 35999999999999999999976 6789999988776 44545543
No 333
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00024 Score=73.97 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=35.0
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+..++|+||||+|.+|+.+|..|+..|++|+|+|+...
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 35689999999999999999999988999999999964
No 334
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.28 E-value=0.0003 Score=72.43 Aligned_cols=37 Identities=30% Similarity=0.493 Sum_probs=33.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+|+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3469999999999999999999999999999998754
No 335
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.27 E-value=0.00032 Score=73.73 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=34.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+|+|||+||+||++|..|++.|++|+|+|+.+.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4568999999999999999999999999999998765
No 336
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.01 Score=56.20 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=37.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCccccc
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFI 87 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l 87 (455)
..+||.+|||||-+||+||...+..|-+|.++|-- .|.+.+..|+|
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV-~PtP~GtsWGl 62 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV-KPTPQGTSWGL 62 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec-ccCCCCCcccc
Confidence 46799999999999999999999999999999954 44444444443
No 337
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.24 E-value=0.00032 Score=66.27 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=33.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~ 80 (455)
...+|+|||+|++||++|+.|++ ..+|+|||.+.....
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~-rhdVTLfEA~~rlGG 44 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR-RHDVTLFEADRRLGG 44 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc-ccceEEEeccccccC
Confidence 46799999999999999999998 579999999876643
No 338
>PRK13984 putative oxidoreductase; Provisional
Probab=97.08 E-value=0.0006 Score=72.36 Aligned_cols=37 Identities=32% Similarity=0.484 Sum_probs=34.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+|+|||+|++|+++|..|++.|++|+|||+.+.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4578999999999999999999999999999998765
No 339
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.04 E-value=0.00051 Score=71.75 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=31.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~ 77 (455)
|+||||||.+|+.+|..|++.| ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999998 79999999964
No 340
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.04 E-value=0.0052 Score=63.96 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=31.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..+|+|||||.+|+-+|..|+..+.+|+|+++.+.
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 35899999999999999999999999999987654
No 341
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.04 E-value=0.0024 Score=63.18 Aligned_cols=59 Identities=29% Similarity=0.417 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCC
Q 012845 156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA 235 (455)
Q Consensus 156 ~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~ 235 (455)
++.+...+.+++.|+ .|+.++.|++++.+ + |++. +|.. .+.++.+|-|.|.
T Consensus 210 ~l~~~a~~~L~~~GV-------------------~v~l~~~Vt~v~~~--~--v~~~---~g~~---~I~~~tvvWaaGv 260 (405)
T COG1252 210 KLSKYAERALEKLGV-------------------EVLLGTPVTEVTPD--G--VTLK---DGEE---EIPADTVVWAAGV 260 (405)
T ss_pred HHHHHHHHHHHHCCC-------------------EEEcCCceEEECCC--c--EEEc---cCCe---eEecCEEEEcCCC
Confidence 455667777888887 99999999999764 3 3433 4431 5899999999997
Q ss_pred C-chhhhhc
Q 012845 236 G-STVRKLV 243 (455)
Q Consensus 236 ~-S~vr~~l 243 (455)
. |++-+.+
T Consensus 261 ~a~~~~~~l 269 (405)
T COG1252 261 RASPLLKDL 269 (405)
T ss_pred cCChhhhhc
Confidence 6 4455553
No 342
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.96 E-value=0.0047 Score=60.92 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=30.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~ 76 (455)
..|+|||+|+.|+-+|..|.+.|.+ |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5799999999999999999999997 99998753
No 343
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.93 E-value=0.032 Score=58.08 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=56.3
Q ss_pred cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCE
Q 012845 150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNI 228 (455)
Q Consensus 150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~ 228 (455)
..++-..+...+.+.+.+.|+ +|+.+++|+++..+++.+. +++....+|. ...+.++.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~--~~~i~a~~ 181 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGA-------------------RIFTYTKVTGLIREGGRVTGVKVEDHKTGE--EERIEAQV 181 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEECCEEEEEEEEEcCCCc--EEEEEcCE
Confidence 457788899999999999997 9999999999998766543 4443111232 23789999
Q ss_pred EEeecCCCch-hhhhcCC
Q 012845 229 LIGTDGAGST-VRKLVGI 245 (455)
Q Consensus 229 vV~AdG~~S~-vr~~l~~ 245 (455)
||.|.|.++. +.+..|.
T Consensus 182 VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 182 VINAAGIWAGRIAEYAGL 199 (516)
T ss_pred EEECCCcchHHHHHhcCC
Confidence 9999999987 5555554
No 344
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.0011 Score=63.58 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=32.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~ 78 (455)
+..|.|||+||||..+|..|.++ ++.|+|+|+.+.|
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 45899999999999999999884 7899999999876
No 345
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.84 E-value=0.052 Score=52.86 Aligned_cols=63 Identities=27% Similarity=0.363 Sum_probs=51.2
Q ss_pred ccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeC
Q 012845 149 VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCN 227 (455)
Q Consensus 149 ~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d 227 (455)
...++-..+...|.+.+.+.|+ +++.+++|++++.+++.+. |.+. +| ++.+|
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~-------------------~~~~~~~v~~i~~~~~~~~~v~~~---~g-----~~~a~ 183 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGV-------------------EIIEHTEVQHIEIRGEKVTAIVTP---SG-----DVQAD 183 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCC-------------------EEEccceEEEEEeeCCEEEEEEcC---CC-----EEECC
Confidence 3456778899999999999887 9999999999998777654 3322 44 67899
Q ss_pred EEEeecCCCch
Q 012845 228 ILIGTDGAGST 238 (455)
Q Consensus 228 ~vV~AdG~~S~ 238 (455)
.||.|+|.++.
T Consensus 184 ~vV~a~G~~~~ 194 (337)
T TIGR02352 184 QVVLAAGAWAG 194 (337)
T ss_pred EEEEcCChhhh
Confidence 99999999986
No 346
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.83 E-value=0.00096 Score=71.61 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=34.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
+-.+|+|||+|||||++|-.|-+.|+.|+||||.+.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 3479999999999999999999999999999999876
No 347
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.77 E-value=0.011 Score=60.50 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=31.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..+|+|||||..|+-+|..|.+.|.+|+|+++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3589999999999999999999999999999874
No 348
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.72 E-value=0.0012 Score=61.88 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=31.4
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC-C-CCEEEEcCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKL-G-IKCSVLEKNKA 77 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~-g-~~V~l~Er~~~ 77 (455)
..+++|+|||||-+|+.+|..+.+. | -+|-|+|-...
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 5689999999999999999999887 4 46999996543
No 349
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.62 E-value=0.0025 Score=65.55 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=35.3
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF 78 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~ 78 (455)
...||.+|||||.||+.+|..|++. .++|+|+|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 5689999999999999999999998 7999999999876
No 350
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.60 E-value=0.018 Score=57.01 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 158 ~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
...+.+.+++.|+ +++.++++.+++. + .+.+. +|. ++.+|.||.|.|...
T Consensus 194 ~~~~~~~l~~~gV-------------------~v~~~~~v~~i~~--~--~v~~~---~g~----~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 194 RRLVLRLLARRGI-------------------EVHEGAPVTRGPD--G--ALILA---DGR----TLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHCCC-------------------EEEeCCeeEEEcC--C--eEEeC---CCC----EEecCEEEEccCCCh
Confidence 3445666677776 8999999998853 2 34444 554 789999999999654
No 351
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.54 E-value=0.018 Score=60.46 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=31.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 4689999999999999999999999999999875
No 352
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.52 E-value=0.0021 Score=62.90 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=33.9
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
...+|++|||+|.-||.+|..|++.|.+|.++||+.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrh 47 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRH 47 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEee
Confidence 457999999999999999999999999999999983
No 353
>PRK12831 putative oxidoreductase; Provisional
Probab=96.43 E-value=0.031 Score=57.27 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..+|+|||||..|+-+|..|.+.|.+|+|+++..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999999764
No 354
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.42 E-value=0.032 Score=55.47 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=75.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~ 122 (455)
.-.|+|||+|..|+-+|..|.-.+.+|+++++.+.+-+ .+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~-------------------~lf-------------------- 253 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP-------------------RLF-------------------- 253 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh-------------------hhh--------------------
Confidence 56799999999999999999999999999998765410 100
Q ss_pred cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (455)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~ 202 (455)
-..+.+...+.+++.|+ +++.++.+.+++.
T Consensus 254 -------------------------------~~~i~~~~~~y~e~kgV-------------------k~~~~t~~s~l~~ 283 (478)
T KOG1336|consen 254 -------------------------------GPSIGQFYEDYYENKGV-------------------KFYLGTVVSSLEG 283 (478)
T ss_pred -------------------------------hHHHHHHHHHHHHhcCe-------------------EEEEecceeeccc
Confidence 11344445566677776 9999999999987
Q ss_pred cCCc--eEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845 203 TDQC--INVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (455)
Q Consensus 203 ~~~~--~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~ 238 (455)
+.++ ..|.+. +|+ ++.+|+||...|+.+.
T Consensus 284 ~~~Gev~~V~l~---dg~----~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 284 NSDGEVSEVKLK---DGK----TLEADLVVVGIGIKPN 314 (478)
T ss_pred CCCCcEEEEEec---cCC----EeccCeEEEeeccccc
Confidence 6643 445555 776 8899999999997654
No 355
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.37 E-value=0.0037 Score=54.00 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=30.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+|.|+|||-.|.++|..|+++|++|+|+.|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999874
No 356
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.29 E-value=0.0048 Score=54.55 Aligned_cols=33 Identities=21% Similarity=0.541 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|||+|..|...|..++++|++|+++|+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999998653
No 357
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.20 E-value=0.031 Score=57.20 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=30.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~ 76 (455)
..+|+|||||..|+-+|..|.+.|. +|+++++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999998 799999764
No 358
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.05 E-value=0.0078 Score=60.42 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=31.2
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~ 79 (455)
|..+|||+|+|.|+.-+.+|.+|++.|.+|+.+||++--+
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG 40 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence 4578999999999999999999999999999999998764
No 359
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.98 E-value=0.23 Score=52.34 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec-CCceE-EEEEeccCCcceeEEEEeCEEEee
Q 012845 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCIN-VIASFLKEGKCTERNIQCNILIGT 232 (455)
Q Consensus 155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~-~~~~~-v~~~~~~~g~~~~~~~~~d~vV~A 232 (455)
..+...|.+.+.+.|+ +++.++.++++..+ ++.+. +......+| ....+.++.||.|
T Consensus 126 ~~i~~~L~~~~~~~gi-------------------~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g--~~~~i~AkaVVLA 184 (570)
T PRK05675 126 HALLHTLYQGNLKNGT-------------------TFLNEWYAVDLVKNQDGAVVGVIAICIETG--ETVYIKSKATVLA 184 (570)
T ss_pred HHHHHHHHHHHhccCC-------------------EEEECcEEEEEEEcCCCeEEEEEEEEcCCC--cEEEEecCeEEEC
Confidence 5688888888888776 99999999999875 34443 333211233 3457899999999
Q ss_pred cCCCchh
Q 012845 233 DGAGSTV 239 (455)
Q Consensus 233 dG~~S~v 239 (455)
+|..+.+
T Consensus 185 TGG~~~~ 191 (570)
T PRK05675 185 TGGAGRI 191 (570)
T ss_pred CCCcccc
Confidence 9988854
No 360
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.91 E-value=0.087 Score=51.70 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=33.0
Q ss_pred cCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
....+.+|||+|.|.+|.++...|-..-++|+|+..+.
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn 88 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN 88 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence 34568899999999999999999998899999998554
No 361
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.87 E-value=0.077 Score=54.58 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=28.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~ 76 (455)
..+|+|||||..|+-+|..+.+.|. +|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 4589999999999999999999886 688766543
No 362
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.81 E-value=0.087 Score=57.54 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=31.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~ 76 (455)
..+|+|||||..|+-+|..|.+.|.+ |+|+++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36899999999999999999999997 99999764
No 363
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.75 E-value=0.032 Score=55.42 Aligned_cols=37 Identities=19% Similarity=0.462 Sum_probs=31.4
Q ss_pred eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCC
Q 012845 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA 235 (455)
Q Consensus 190 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~ 235 (455)
.+++++.|+.++..... +.+. +|. ++.++.+|.|+|.
T Consensus 143 e~~~~t~v~~~D~~~K~--l~~~---~Ge----~~kys~LilATGs 179 (478)
T KOG1336|consen 143 ELILGTSVVKADLASKT--LVLG---NGE----TLKYSKLIIATGS 179 (478)
T ss_pred eEEEcceeEEeeccccE--EEeC---CCc----eeecceEEEeecC
Confidence 89999999999987765 4444 665 8899999999998
No 364
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.74 E-value=0.095 Score=56.17 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=30.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~ 76 (455)
..+|+|||||..|+-+|..|.+.|. +|+|+++..
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999997 599998765
No 365
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.74 E-value=0.011 Score=56.42 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=32.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.+|.|||+|..|...|..|+++|++|+++|+++..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 37999999999999999999999999999988653
No 366
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.72 E-value=0.012 Score=56.50 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=32.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
...+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 345799999999999999999999999999998753
No 367
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.68 E-value=0.042 Score=53.51 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=37.7
Q ss_pred eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCC--CchhhhhcC
Q 012845 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA--GSTVRKLVG 244 (455)
Q Consensus 190 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~--~S~vr~~l~ 244 (455)
.|+-+..|.++......+.+.+. +|. ++..|+||.|.|. ||.+...-|
T Consensus 409 ~V~pna~v~sv~~~~~nl~lkL~---dG~----~l~tD~vVvavG~ePN~ela~~sg 458 (659)
T KOG1346|consen 409 DVRPNAKVESVRKCCKNLVLKLS---DGS----ELRTDLVVVAVGEEPNSELAEASG 458 (659)
T ss_pred eeccchhhhhhhhhccceEEEec---CCC----eeeeeeEEEEecCCCchhhccccc
Confidence 88888888888877777777777 887 8899999999994 565555444
No 368
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.67 E-value=0.11 Score=58.42 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=30.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~ 76 (455)
..+|+|||+|+.|+-+|..|++.|.+ |+|+|+.+
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 36899999999999999999999964 89998753
No 369
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.65 E-value=0.015 Score=56.38 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
.+.+|+|||+|-.|.++|..|++.|++|+++.|+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34579999999999999999999999999999863
No 370
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.62 E-value=0.015 Score=56.19 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..|.|||+|..|...|..|+.+|++|+++|+.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 371
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.60 E-value=0.04 Score=57.60 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=30.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+...+|||||+=||=+|..|.+.|.+|+|++-.+
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~ 178 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP 178 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecc
Confidence 3457999999999999999999999999998654
No 372
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.58 E-value=0.013 Score=56.62 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=31.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 599999999999999999999999999998854
No 373
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.48 E-value=0.016 Score=59.47 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
+|+|||.|++|+++|..|++.|++|+++|++..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999988664
No 374
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.46 E-value=0.017 Score=59.55 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=31.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..+|+|||+|.+|+.+|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4579999999999999999999999999999765
No 375
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.37 E-value=0.1 Score=51.19 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=31.9
Q ss_pred eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc-hhhhhc
Q 012845 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS-TVRKLV 243 (455)
Q Consensus 190 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S-~vr~~l 243 (455)
.+..++.|..+..+ .+.+.+. +|+ .+++.+-++|.|+|... ++-+.+
T Consensus 289 ~~~~~t~Vk~V~~~--~I~~~~~---~g~--~~~iPYG~lVWatG~~~rp~~k~l 336 (491)
T KOG2495|consen 289 DLDTGTMVKKVTEK--TIHAKTK---DGE--IEEIPYGLLVWATGNGPRPVIKDL 336 (491)
T ss_pred eeecccEEEeecCc--EEEEEcC---CCc--eeeecceEEEecCCCCCchhhhhH
Confidence 89999999998643 3333333 444 35788999999999764 344444
No 376
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=95.36 E-value=3.2 Score=42.96 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeCEEEeec
Q 012845 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTD 233 (455)
Q Consensus 155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~Ad 233 (455)
..+.+.|.+.+++.|+ +|++++.|++|..+++. +.|.+. +|. ++.+|.||.|.
T Consensus 219 ~~l~~al~~~~~~~G~-------------------~i~~~~~V~~i~~~~~~~~~V~~~---~g~----~~~ad~VI~a~ 272 (502)
T TIGR02734 219 GALVAAMAKLAEDLGG-------------------ELRLNAEVIRIETEGGRATAVHLA---DGE----RLDADAVVSNA 272 (502)
T ss_pred HHHHHHHHHHHHHCCC-------------------EEEECCeEEEEEeeCCEEEEEEEC---CCC----EEECCEEEECC
Confidence 5677888888888876 99999999999877665 335544 554 67999999998
Q ss_pred CCCchhhhhc
Q 012845 234 GAGSTVRKLV 243 (455)
Q Consensus 234 G~~S~vr~~l 243 (455)
+....+...+
T Consensus 273 ~~~~~~~~l~ 282 (502)
T TIGR02734 273 DLHHTYRRLL 282 (502)
T ss_pred cHHHHHHHhc
Confidence 8776665555
No 377
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.34 E-value=0.022 Score=48.60 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=29.4
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 46 VvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
|+|+|+|-.|+..|..|++.|++|+++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999875
No 378
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.32 E-value=0.16 Score=48.49 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=32.8
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
...||.+|||||-.|++.|...+.+|.+|.|+|-.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 45899999999999999999999999999999954
No 379
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.28 E-value=0.021 Score=52.43 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=32.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
+++|||+|..|..+|..|.+.|++|+++|+++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence 6999999999999999999999999999998754
No 380
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.08 E-value=0.83 Score=45.82 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=33.0
Q ss_pred cceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 188 ~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
+++|+++++|++|+.+++++.+.+. .+|. ++.+|.||.|.-...
T Consensus 211 g~~i~~~~~V~~i~~~~~~~~~~~~--~~g~----~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 211 GGEVRLGTRVRSIEANAGGIRALVL--SGGE----TLPADAVVLAVPPRH 254 (419)
T ss_pred CCEEEcCCeeeEEEEcCCcceEEEe--cCCc----cccCCEEEEcCCHHH
Confidence 5699999999999988887665443 1343 678999999866443
No 381
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.05 E-value=0.028 Score=57.40 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=32.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
...+|+|||+|.+|+.+|..|++.|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45789999999999999999999999999999875
No 382
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.02 E-value=0.028 Score=53.74 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=31.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
.+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3699999999999999999999999999997643
No 383
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.98 E-value=0.026 Score=53.95 Aligned_cols=33 Identities=18% Similarity=0.470 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 599999999999999999999999999998754
No 384
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.89 E-value=0.025 Score=50.18 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=27.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|||.|-.||.+|..|++.|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 699999999999999999999999999998753
No 385
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.85 E-value=0.54 Score=46.16 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=38.0
Q ss_pred cceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845 188 GREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (455)
Q Consensus 188 ~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S 237 (455)
++.+.-+++|.+++..+++ +.+.+.. ..++..++++.|.||.|+|..-
T Consensus 292 ~v~l~~~~ev~~~~~~G~g~~~l~~~~--~~~~~~~t~~~D~vIlATGY~~ 340 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGDGRYRLTLRH--HETGELETVETDAVILATGYRR 340 (436)
T ss_pred CeeeccccceeeeecCCCceEEEEEee--ccCCCceEEEeeEEEEeccccc
Confidence 3588899999999998877 6677664 3344456889999999999873
No 386
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.68 E-value=0.036 Score=53.09 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=31.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 387
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.57 E-value=0.042 Score=52.76 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=31.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
.+|.|||+|..|...|..|+++|++|.++|+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998754
No 388
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.56 E-value=0.045 Score=52.77 Aligned_cols=33 Identities=21% Similarity=0.489 Sum_probs=30.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
.+|+|||+|-.|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999999864
No 389
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.55 E-value=0.044 Score=53.00 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=31.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
.+|.|||+|..|..+|..|++.|++|+++|++..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 4699999999999999999999999999997653
No 390
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.53 E-value=0.24 Score=53.23 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=30.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~ 77 (455)
..+|+|||||..|+-+|..+.+.|. +|+++.+++.
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 3589999999999999999999997 6999887643
No 391
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.52 E-value=0.3 Score=50.18 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=31.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~ 77 (455)
..+|+|||+|..|+-+|..+.+.|. +|+|+++.+.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 4689999999999999999999996 6999998653
No 392
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.30 E-value=0.42 Score=53.32 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=31.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..+|+|||||..|+-+|..+.+.|.+|+++.+++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4689999999999999999999999999998764
No 393
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.26 E-value=0.049 Score=52.38 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+|+|||+|-.|.++|..|++.|++|++++|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999999853
No 394
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.26 E-value=0.053 Score=56.08 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=32.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
-..|.|||+|..|...|..|+++|++|+++|+++..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~ 42 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA 42 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 356999999999999999999999999999988653
No 395
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.22 E-value=0.056 Score=52.03 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=29.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er 74 (455)
+|+|||+|..|.++|..|++.|++|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999998
No 396
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.22 E-value=0.074 Score=48.00 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=30.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
...|+|||||.+|...+..|.+.|.+|+|++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 458999999999999999999999999999864
No 397
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.18 E-value=0.056 Score=51.49 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 599999999999999999999999999998754
No 398
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.18 E-value=0.073 Score=45.84 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=29.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEc
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLE 73 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~E 73 (455)
....|+|||||..|..-|..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45789999999999999999999999999995
No 399
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.08 E-value=0.038 Score=43.86 Aligned_cols=35 Identities=34% Similarity=0.458 Sum_probs=31.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+...|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 46789999999999999999999999999998763
No 400
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.06 E-value=0.059 Score=55.68 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 699999999999999999999999999998654
No 401
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.04 E-value=0.065 Score=52.54 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
+|.|||+|..|...|..|+++|++|++++|.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999999999974
No 402
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.99 E-value=0.081 Score=47.56 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=31.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKN 75 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~ 75 (455)
.+.+|+|||+|-.|...|..|++.|+ +++|+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999999999 59999977
No 403
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.98 E-value=0.07 Score=46.54 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=30.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
.+..|+|+|+|.+|..+|..|...|.+|+++|..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35789999999999999999999999999999764
No 404
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.97 E-value=0.074 Score=51.86 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=30.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+|.|||+|..|.+.|..|++.|++|++++|++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 69999999999999999999999999999864
No 405
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.93 E-value=0.059 Score=54.33 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=31.6
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
.+|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998754
No 406
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.64 Score=44.68 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=33.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...+|+|||||-+.+--|+.|++.+-+|+|+=|++..
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ 178 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF 178 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc
Confidence 4459999999999999999999999999999998765
No 407
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.84 E-value=0.092 Score=47.29 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=30.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4568999999999999999999999999999853
No 408
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.79 E-value=0.074 Score=47.58 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=34.2
Q ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
|.....|.|||+|..|.-.|...+..|++|.|+|++..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 34567899999999999999999999999999998864
No 409
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.68 E-value=0.072 Score=47.71 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=29.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
...+|+|||+|.++.-+|..|++.|-+|+++=|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 45789999999999999999999999999998875
No 410
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=93.66 E-value=0.49 Score=47.72 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=31.1
Q ss_pred CcEEEEcCccccCCCC-cCccchhhHHHHHHHHHHHHH
Q 012845 359 NQIILAGDACHRFPPA-GGFGMNTGVQDAHNLAWKIAS 395 (455)
Q Consensus 359 ~~vvliGDAAh~~~P~-~G~G~~~Al~da~~La~~L~~ 395 (455)
.|+..+|+...-.+|. -|.|-..|+..|...++.+.+
T Consensus 381 ~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 381 ENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAE 418 (422)
T ss_pred cceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence 7999999998888876 667777889999999988765
No 411
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.52 E-value=0.095 Score=50.63 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..+|.|||+|-.|.++|..|++.|++|++++|+..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34699999999999999999999999999999754
No 412
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.43 E-value=0.08 Score=54.64 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=32.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
.+|.|||+|..|...|..|+++|++|+++|+++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 45999999999999999999999999999988653
No 413
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.33 E-value=0.097 Score=51.00 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=30.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+|.|||+|-.|.++|..|++.|++|+++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 49999999999999999999999999999864
No 414
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.33 E-value=0.096 Score=51.91 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=31.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..+|+|||+|.+|+.+|..|.+.|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999999999999864
No 415
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.30 E-value=0.14 Score=42.77 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=32.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~ 76 (455)
....|+|||+|-+|-+++..|+..|.+ |+|+-|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457899999999999999999999998 99999874
No 416
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.29 E-value=0.1 Score=50.39 Aligned_cols=33 Identities=39% Similarity=0.477 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~ 77 (455)
+|.|||+|..|.++|+.|++.|. +|.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 59999999999999999999994 7999998754
No 417
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.28 E-value=0.083 Score=44.23 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 46 VvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
++|+|+|+.+.++|..++..|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998865
No 418
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.26 E-value=0.85 Score=50.86 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=30.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~-g~-~V~l~Er~~ 76 (455)
...+|+|||||..|+-+|..+.+. |. +|+|++|+.
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 356899999999999999999886 86 799999875
No 419
>PRK04148 hypothetical protein; Provisional
Probab=93.25 E-value=0.07 Score=44.27 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=30.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
.+|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999998754
No 420
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=93.25 E-value=9.3 Score=39.32 Aligned_cols=32 Identities=19% Similarity=0.099 Sum_probs=26.8
Q ss_pred CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHH
Q 012845 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393 (455)
Q Consensus 359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L 393 (455)
.+++|.||--..--| .+|+-|+..+..+|+.|
T Consensus 442 ~~l~lAGD~t~~~~p---as~egAv~sG~~aA~~i 473 (474)
T TIGR02732 442 SNFFLAGSYTQQDYI---DSMEGATLSGRQAAAAI 473 (474)
T ss_pred CCeEEeccccccCch---HHHhHHHHHHHHHHHHh
Confidence 799999998876666 48999999999888765
No 421
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.24 E-value=0.12 Score=44.96 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=31.4
Q ss_pred CcccCEEEECCCH-HHHHHHHHHHhCCCCEEEEcCC
Q 012845 41 EAVVPVLIVGAGP-VGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 41 ~~~~dVvIVGgG~-aGl~~A~~La~~g~~V~l~Er~ 75 (455)
-...+|+|||+|- +|..+|..|.+.|.+|+++.|+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3568999999995 7999999999999999999986
No 422
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.13 E-value=0.072 Score=48.87 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=26.9
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~ 77 (455)
+.+|||||+||.+||-.|+++ .-+|+|+-..+.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 368999999999999999988 456888775543
No 423
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.09 E-value=0.13 Score=49.53 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=30.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~ 77 (455)
.+|.|||+|..|+..|..|+..|+ +|.++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 369999999999999999999887 8999998533
No 424
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.09 E-value=0.14 Score=41.37 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 46 VvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
|+|||.|..|..++..|.+.+++|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999998853
No 425
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.06 E-value=1.2 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKL 65 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~ 65 (455)
..+|+|||+|..|+-+|..|.+.
T Consensus 166 gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 166 SDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC
Confidence 35899999999999999999876
No 426
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.00 E-value=0.096 Score=53.78 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..+|+|+|+|++|+.++..++..|.+|.++|+++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 56899999999999999999999999999998754
No 427
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.93 E-value=0.15 Score=49.43 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=32.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~ 78 (455)
...+|+|||+|-.|..+|+.|+..|+ +|.|+|.++..
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 44689999999999999999999996 89999987654
No 428
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.92 E-value=0.11 Score=49.41 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=29.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+|.|||.|..|.++|..|+++|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999999864
No 429
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.92 E-value=0.13 Score=44.52 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=29.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
.+|.|||-|-.|..+|..|.++|++|.+|||++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 3699999999999999999999999999998853
No 430
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=92.91 E-value=0.61 Score=46.60 Aligned_cols=34 Identities=26% Similarity=0.584 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 012845 46 VLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS 79 (455)
Q Consensus 46 VvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~ 79 (455)
++|||+|++|+.+|..|.+. +.+|+++.+.....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~ 36 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS 36 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCC
Confidence 58999999999999999886 46788888776543
No 431
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.90 E-value=0.13 Score=42.99 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=30.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~ 76 (455)
+.+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4679999999999999999999999 599999764
No 432
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.84 E-value=0.16 Score=47.78 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=31.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~ 77 (455)
.+..|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 45789999999999999999999996 6999997643
No 433
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.80 E-value=0.13 Score=49.93 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=30.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+|.|||+|..|..+|..|++.|++|++++|++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 59999999999999999999999999999864
No 434
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.74 E-value=0.11 Score=52.42 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=31.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998764
No 435
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.61 E-value=0.18 Score=48.80 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=32.5
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~ 77 (455)
....+|+|||+|-.|.++|+.|+..|+ ++.|||.+..
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 345799999999999999999999998 7999998644
No 436
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.2 Score=48.29 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=36.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~ 80 (455)
..+||+|+|.|+.-+.++.+|+..|.+|+.|||++.-+.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence 479999999999999999999999999999999987654
No 437
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=92.51 E-value=15 Score=38.02 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCC-cceeEEEEeCEEEee
Q 012845 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEG-KCTERNIQCNILIGT 232 (455)
Q Consensus 155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g-~~~~~~~~~d~vV~A 232 (455)
..|.+.|.+.+++.|+ +|+++++|++|..+++... +.+. ++ ++..+.+.+|.||.+
T Consensus 232 ~~l~~aL~~~~~~~G~-------------------~i~~~~~V~~I~~~~~~~~gv~~~---~~~~~~~~~~~ad~VI~~ 289 (492)
T TIGR02733 232 QTLSDRLVEALKRDGG-------------------NLLTGQRVTAIHTKGGRAGWVVVV---DSRKQEDLNVKADDVVAN 289 (492)
T ss_pred HHHHHHHHHHHHhcCC-------------------EEeCCceEEEEEEeCCeEEEEEEe---cCCCCceEEEECCEEEEC
Confidence 4578888888888775 9999999999998776432 3333 32 121236789999988
Q ss_pred cCCCc
Q 012845 233 DGAGS 237 (455)
Q Consensus 233 dG~~S 237 (455)
.-...
T Consensus 290 ~~~~~ 294 (492)
T TIGR02733 290 LPPQS 294 (492)
T ss_pred CCHHH
Confidence 77643
No 438
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=92.32 E-value=1.3 Score=49.35 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=29.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC-C-CCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKL-G-IKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~-g-~~V~l~Er~~ 76 (455)
..+|+|||||..|+-+|..+.+. | .+|+|+.|++
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 46899999999999999999887 5 3799999875
No 439
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.29 E-value=0.19 Score=49.13 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=32.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~ 76 (455)
.+..|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35689999999999999999999998 799999875
No 440
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=92.28 E-value=1.1 Score=50.36 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=29.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN 75 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~ 75 (455)
...+|+|||||..|+-+|..+.+.|.+ |+++.|+
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 346899999999999999999999985 7777654
No 441
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.25 E-value=0.13 Score=55.52 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=32.0
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..|.|||+|..|...|..++++|++|+++|.++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA 348 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 46999999999999999999999999999987543
No 442
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.23 E-value=0.21 Score=42.17 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=29.5
Q ss_pred CEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845 45 PVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGg-G~aGl~~A~~La~~g~--~V~l~Er~~~ 77 (455)
+|.|||+ |-.|.++|+.|...++ ++.|+|++..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 6999999 9999999999999975 6999998743
No 443
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.14 E-value=0.17 Score=50.66 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=31.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
...|+|+|+|+.|+.+|..|+..|.+|+++|+++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 45899999999999999999999999999998653
No 444
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.13 E-value=0.21 Score=50.98 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=32.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
...|+|+|.|.+|.++|..|+++|++|+++|..+.+
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 457999999999999999999999999999977653
No 445
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.11 E-value=0.75 Score=46.10 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=51.8
Q ss_pred cchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEe
Q 012845 152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG 231 (455)
Q Consensus 152 i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~ 231 (455)
+.-..|.+.|.+.+++.|+ ++..+++|.++..+++.+....+ +++. +..+++|.+|.
T Consensus 260 v~G~RL~~aL~~~~~~~Gg-------------------~il~g~~V~~i~~~~~~v~~V~t--~~g~--~~~l~AD~vVL 316 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGG-------------------VMLPGDRVLRAEFEGNRVTRIHT--RNHR--DIPLRADHFVL 316 (419)
T ss_pred CcHHHHHHHHHHHHHHCCC-------------------EEEECcEEEEEEeeCCeEEEEEe--cCCc--cceEECCEEEE
Confidence 3456788889999999987 89999999999988877664332 1331 12789999999
Q ss_pred ecCCC-ch-hhhhc
Q 012845 232 TDGAG-ST-VRKLV 243 (455)
Q Consensus 232 AdG~~-S~-vr~~l 243 (455)
|+|.+ |. +.+.+
T Consensus 317 AaGaw~S~gL~a~l 330 (419)
T TIGR03378 317 ASGSFFSNGLVAEF 330 (419)
T ss_pred ccCCCcCHHHHhhc
Confidence 99999 75 44444
No 446
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.08 E-value=0.24 Score=44.62 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=31.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~ 76 (455)
.+.+|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 46789999999999999999999998 799999764
No 447
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.96 E-value=0.17 Score=54.57 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=32.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
-..|.|||+|..|...|..++++|++|+++|.+...
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS 348 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 346999999999999999999999999999988653
No 448
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=91.94 E-value=0.42 Score=49.76 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=30.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
...+|+|||+|.+|.=.|..|++..-+|.+.=|+..
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 357899999999999999999999999999888753
No 449
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.88 E-value=0.22 Score=50.86 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=31.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
...|+|+|+|.+|.++|..|++.|.+|.+.|++..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 35699999999999999999999999999997653
No 450
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.81 E-value=0.18 Score=48.20 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.5
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|||.|..|..+|..|++.|++|++++|++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 489999999999999999999999999998753
No 451
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.78 E-value=0.22 Score=48.02 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=30.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~ 77 (455)
.+|+|||+|..|..+|..|+..|+ +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 9999998654
No 452
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.66 E-value=0.22 Score=45.50 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=29.2
Q ss_pred CEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 45 PVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 45 dVvIVG-gG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+|.||| +|..|.++|..|++.|++|.+++|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 599997 79999999999999999999998764
No 453
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.65 E-value=0.18 Score=54.63 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=32.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..|.|||+|..|...|..++.+|++|+++|.++..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~ 370 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAG 370 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHH
Confidence 46999999999999999999999999999988653
No 454
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.65 E-value=0.23 Score=49.34 Aligned_cols=34 Identities=35% Similarity=0.667 Sum_probs=31.1
Q ss_pred cccCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 42 AVVPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 42 ~~~dVvIVG-gG~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
....|+||| .|..|.++|..|+++|++|++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 346799999 8999999999999999999999985
No 455
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.47 E-value=0.26 Score=48.12 Aligned_cols=35 Identities=29% Similarity=0.580 Sum_probs=32.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~ 76 (455)
.+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 35789999999999999999999999 799999864
No 456
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.41 E-value=0.24 Score=47.38 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=31.1
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..|.|||||..|.-.|..++..|++|+++|.+..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~ 37 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE 37 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence 5799999999999999999998899999998843
No 457
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.26 E-value=0.26 Score=47.58 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~ 77 (455)
+|+|||+|-+|.++|..|+..|. ++.|+|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 69999999999999999999994 7999999754
No 458
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.23 E-value=0.34 Score=42.46 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~ 76 (455)
+|+|||+|-.|...|..|++.|+. ++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999995 99999764
No 459
>PRK13984 putative oxidoreductase; Provisional
Probab=91.22 E-value=1.6 Score=46.36 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=28.4
Q ss_pred CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc
Q 012845 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398 (455)
Q Consensus 359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~ 398 (455)
.+|+.+||+++. ..+..|+.++..+|..|.+++.
T Consensus 569 ~gVfAaGD~~~~------~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 569 PWLFAGGDIVHG------PDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCEEEecCcCCc------hHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999863 2467899999999999988764
No 460
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.19 E-value=0.28 Score=45.61 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=33.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
.+..++|+|+|+.+..+|..++..|++|+|+|-++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457999999999999999999999999999997755
No 461
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.15 E-value=0.25 Score=47.35 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=32.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..+|+|||.|.+|..+|..|++.|.+|++++|++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 57899999999999999999999999999998843
No 462
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.05 E-value=0.32 Score=45.07 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=31.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~ 77 (455)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 45789999999999999999999998 5999997643
No 463
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.04 E-value=0.24 Score=49.88 Aligned_cols=36 Identities=33% Similarity=0.450 Sum_probs=33.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
..+|+|+|-|.+|+++|..|.+.|.+|+++|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 578999999999999999999999999999987766
No 464
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=90.97 E-value=0.13 Score=42.53 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=27.6
Q ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (455)
Q Consensus 41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er 74 (455)
..+.+|.|||+|-.|..+|..|.+.|+.|.-+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYS 41 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESS
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 4578999999999999999999999999876654
No 465
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=90.93 E-value=0.27 Score=47.23 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~ 35 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ 35 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 699999999999999999999999999998754
No 466
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.90 E-value=0.33 Score=44.56 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=31.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIK---CSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~---V~l~Er~~ 76 (455)
..+|+|+|+|-+|...|..|.+.|.+ |.|++|+.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 45799999999999999999999985 99999984
No 467
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.88 E-value=0.28 Score=48.88 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
+|.|||.|-.|+.+|..|+. |++|+++|++...
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 59999999999999988886 9999999998643
No 468
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.86 E-value=0.28 Score=50.25 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=31.5
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
.+|+|+|.|.+|.++|..|.+.|++|++.|+++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4799999999999999999999999999998754
No 469
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.84 E-value=0.32 Score=46.37 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=30.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~ 76 (455)
..+|+|+|+|-+|.++|..|++.|. +|+|++|+.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3579999999999999999999998 699999874
No 470
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.81 E-value=0.4 Score=43.51 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=31.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~ 76 (455)
.+..|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 457899999999999999999999985 99999764
No 471
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.75 E-value=0.41 Score=40.38 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=29.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~ 77 (455)
+|+|||.|-.|..+|..|++.|+ +++|+|.+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 5999997643
No 472
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.75 E-value=0.27 Score=50.73 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=30.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
...|+|+|.|.+|++++..|.+.|.+|++.|+.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3479999999999999999999999999999653
No 473
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.75 E-value=2.2 Score=45.74 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=30.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~ 77 (455)
..+|+|||+|..|+-+|..+.+.|- +|+++++++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4689999999999999999888885 7999987643
No 474
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.72 E-value=0.3 Score=47.11 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=29.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK 76 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~ 76 (455)
.+|+|||+|..|.++|..|.+.|+ +|.++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 469999999999999999999995 799999864
No 475
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.68 E-value=0.33 Score=47.95 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=31.4
Q ss_pred cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~ 77 (455)
.+|+|||+|-.|..+|..|+++| .+|+|-+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 47999999999999999999999 89999999843
No 476
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.63 E-value=0.36 Score=46.86 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=32.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF 78 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~ 78 (455)
.+.+|+|||+|-.|.++|+.|+..| .++.|+|.+...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~ 41 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGV 41 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCcc
Confidence 4568999999999999999999999 589999987543
No 477
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.55 E-value=0.26 Score=53.24 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=30.7
Q ss_pred cCEEEECCCHHHHHHHHHHH-hCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLT-KLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La-~~g~~V~l~Er~~~ 77 (455)
..|.|||+|..|...|..++ ++|++|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 46999999999999999998 58999999998754
No 478
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.52 E-value=0.24 Score=53.57 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=31.0
Q ss_pred cCEEEECCCHHHHHHHHHHH-hCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLT-KLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La-~~g~~V~l~Er~~~ 77 (455)
..|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 57999999999999999999 88999999998654
No 479
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=90.47 E-value=0.32 Score=46.58 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=30.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|||.|..|..+|..|++.|++|.++++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~ 36 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE 36 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 699999999999999999999999999998753
No 480
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.47 E-value=0.38 Score=44.72 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=31.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~ 76 (455)
.+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35789999999999999999999998 699999764
No 481
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=90.38 E-value=0.52 Score=35.86 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=29.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEK 74 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er 74 (455)
..+++|+|.|-+|..+|..|.+. +.+|.+++|
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45799999999999999999998 678999998
No 482
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.36 E-value=0.32 Score=46.79 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845 46 VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (455)
Q Consensus 46 VvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~ 77 (455)
|.|||+|-.|..+|..|+..|+ +|.++|.+..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 6899999999999999999887 9999998743
No 483
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.35 E-value=0.33 Score=47.53 Aligned_cols=34 Identities=26% Similarity=0.542 Sum_probs=31.3
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
++|.|||.|-.||..|..|++.|++|+.+|....
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3699999999999999999999999999998753
No 484
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.28 E-value=0.25 Score=46.55 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=32.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
.+-+|+|+|||.+|.-+|..+.-.|-+|+|+|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 35799999999999999999999999999999874
No 485
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.27 E-value=0.34 Score=49.71 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=31.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..+|+|+|+|++|++++..+...|.+|.++|++..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998753
No 486
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.24 E-value=0.34 Score=49.75 Aligned_cols=35 Identities=17% Similarity=-0.098 Sum_probs=31.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
..+|+|+|.|.+|.++|..|.+.|.+|++.|.+..
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 35799999999999999999999999999997644
No 487
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=90.16 E-value=0.99 Score=46.72 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeec
Q 012845 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD 233 (455)
Q Consensus 155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~Ad 233 (455)
..+.+.|.+.+++.|+ +|+.+++|++|..+++.+. |.+. +|. ++++|.||.|.
T Consensus 229 ~~l~~~L~~~~~~~G~-------------------~i~~~~~V~~I~~~~~~~~gv~~~---~g~----~~~ad~vV~a~ 282 (493)
T TIGR02730 229 GQIAESLVKGLEKHGG-------------------QIRYRARVTKIILENGKAVGVKLA---DGE----KIYAKRIVSNA 282 (493)
T ss_pred HHHHHHHHHHHHHCCC-------------------EEEeCCeeeEEEecCCcEEEEEeC---CCC----EEEcCEEEECC
Confidence 5688889999999887 9999999999987665443 4444 554 68899999999
Q ss_pred CCCchhhhhcC
Q 012845 234 GAGSTVRKLVG 244 (455)
Q Consensus 234 G~~S~vr~~l~ 244 (455)
|.+..+++.++
T Consensus 283 ~~~~~~~~Ll~ 293 (493)
T TIGR02730 283 TRWDTFGKLLK 293 (493)
T ss_pred ChHHHHHHhCC
Confidence 99888877664
No 488
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.12 E-value=0.32 Score=49.14 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=31.2
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
.+|+|||-|.+|.++|..|.+.|++|+++|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4699999999999999999999999999997654
No 489
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.11 E-value=0.45 Score=47.23 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=33.1
Q ss_pred CCcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 40 NEAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 40 ~~~~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
+..+.+|+|.|| |..|..++..|.++|++|+.++|..
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 345678999999 9999999999999999999999864
No 490
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.11 E-value=0.37 Score=49.92 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=30.7
Q ss_pred cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (455)
Q Consensus 44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~ 76 (455)
..|.|+|.|-+|.++|..|.+.|++|.+.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 469999999999999999999999999999765
No 491
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.08 E-value=0.32 Score=46.77 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=30.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|||.|..|..+|..|+++|++|.+++|++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 599999999999999999999999999998753
No 492
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=90.05 E-value=0.26 Score=50.31 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~ 78 (455)
+|.|||.|..|..+|..|+++|++|.+++|++..
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~ 36 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEK 36 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 6999999999999999999999999999998653
No 493
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.00 E-value=0.36 Score=48.13 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=32.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
....|+|||.|+.|..+|..|+..|.+|+++|+++.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 356899999999999999999999999999998764
No 494
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.94 E-value=0.45 Score=45.93 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=30.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~ 77 (455)
+.+|+|||+|-.|.++|+.|+..|+ ++.|||.+..
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 4589999999999999999999876 5999998753
No 495
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.87 E-value=0.46 Score=42.42 Aligned_cols=33 Identities=24% Similarity=0.569 Sum_probs=30.1
Q ss_pred ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCC
Q 012845 43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKN 75 (455)
Q Consensus 43 ~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~ 75 (455)
..+|+|+|| |..|..+|..|++.|.+|+++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 457999997 999999999999999999999876
No 496
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.80 E-value=0.49 Score=43.52 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=31.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~ 76 (455)
.+.+|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35789999999999999999999998 699999764
No 497
>PRK08328 hypothetical protein; Provisional
Probab=89.78 E-value=0.49 Score=43.59 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=31.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (455)
Q Consensus 42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~ 76 (455)
.+.+|+|||+|=.|..+|..|++.|+ +++|+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35789999999999999999999998 599998664
No 498
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.72 E-value=0.37 Score=46.43 Aligned_cols=33 Identities=33% Similarity=0.623 Sum_probs=29.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
+|.|+|+|-.|+..|+.|++.|.+|+++=|.+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 699999999999999999999988888887653
No 499
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.64 E-value=0.39 Score=45.76 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=32.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (455)
Q Consensus 43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~ 77 (455)
...|+|+|.|-.|.++|..|+..|.+|++++|+..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998753
No 500
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.56 E-value=0.43 Score=46.96 Aligned_cols=33 Identities=36% Similarity=0.654 Sum_probs=27.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845 45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (455)
Q Consensus 45 dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~ 77 (455)
.|+|+|+||.||+++..++..|. +|.++|+.+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 59999999999999888888886 5777787643
Done!