BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012846
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 33/187 (17%)
Query: 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN 267
+T+D + + K I E +E VK + + +G A +G +LYGPPGTGK+ L A+++
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 268 YLNFDIYDLELSAVHSNSELRRVLLSTGNR--------------SILVVEDIDC--SLEL 311
+ + + S +EL + + G+R SI+ +++ID S +
Sbjct: 205 HTDCKFIRV------SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRV 258
Query: 312 EDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRP 371
E + V Q T+ LLN LDG +S + I+ TN D LDPA+LRP
Sbjct: 259 EGSGGGDSEV---------QRTMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRP 307
Query: 372 GRMDVHI 378
GR+D I
Sbjct: 308 GRIDRKI 314
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 95/188 (50%), Gaps = 19/188 (10%)
Query: 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY 268
TFD + E + + E +E +K + ++RVG +G LLYGPPGTGK+ L A++
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 269 LNFDIYDLELSA-----VHSNSELRRVLLSTGNR---SILVVEDIDCSLELEDRQ-AQPT 319
+ + S + ++ + R + + I+ ++++D + R+ ++ T
Sbjct: 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDA---IGGRRFSEGT 295
Query: 320 TVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIY 379
+ + R +Q TL LL +DG + + G +II+ TN D LDPA+LRPGR+D +
Sbjct: 296 SAD-----REIQRTLMELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVE 348
Query: 380 MSYCTPCG 387
+ G
Sbjct: 349 IPLPNEAG 356
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 29/173 (16%)
Query: 220 KKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279
K+ I E +E + + D Y ++G RG LLYGPPGTGK+ L+ A++N +
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV--- 237
Query: 280 AVHSNSELRRVLLSTGNR--------------SILVVEDIDCSLELEDRQAQPTTVNVLK 325
+ SE L G R SI+ ++++D S+ + AQ +
Sbjct: 238 ---NGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD-SIATKRFDAQTGSD---- 289
Query: 326 PLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
R +Q L LL +DG S + ++ TN D LDPA+LRPGR+D I
Sbjct: 290 --REVQRILIELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKI 338
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 30/179 (16%)
Query: 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN 270
D +E ++++ I E +E +K + + +VG +G LLYGPPGTGK+ L A++ N
Sbjct: 18 DIGGLEKQMQE-IREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76
Query: 271 FDIYDLELSAVHSNSELRRVLLSTGNR--------------SILVVEDIDCSLELEDRQA 316
+ SEL + + G SI+ +++ID A
Sbjct: 77 ATFIRV------VGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAI-------A 123
Query: 317 QPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMD 375
T + R +Q TL LL +DG + + GD +II TN D LDPA+LRPGR D
Sbjct: 124 AKRTDALTGGDREVQRTLMQLLAEMDG-FDARGDVKII-GATNRPDILDPAILRPGRFD 180
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 16/179 (8%)
Query: 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269
F +A E K+ ++E ++ F+K + Y +G +G LL GPPGTGK+ L A++
Sbjct: 10 FKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68
Query: 270 NFDIYDLELSA-----VHSNSELRRVLLSTGNR---SILVVEDIDCSLELEDRQAQPTTV 321
+ + + S+ V + R L T + SI+ +++ID + R A
Sbjct: 69 HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAI--GKSRAAG---- 122
Query: 322 NVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYM 380
V+ + TL+ LL +DG S I++ TN + LDPA++RPGR D + +
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENA-PVIVLAATNRPEILDPALMRPGRFDRQVLV 180
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 85/181 (46%), Gaps = 40/181 (22%)
Query: 219 LKKMIIEDLERFV---KRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275
L K I E +E V KR D ++ +G +G L+YGPPGTGK+ L A + N
Sbjct: 186 LDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF-- 243
Query: 276 LELSA-------VHSNSELRR---VLLSTGNRSILVVEDIDC-------SLELEDRQAQP 318
L+L+A + ++L R L +I+ ++++D S + DR+ Q
Sbjct: 244 LKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQR 303
Query: 319 TTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF-TTNHKDRLDPAVLRPGRMDVH 377
T + LLN LDG S D+R+ V TN D LDPA+LR GR+D
Sbjct: 304 TMLE--------------LLNQLDGFSS---DDRVKVLAATNRVDVLDPALLRSGRLDRK 346
Query: 378 I 378
I
Sbjct: 347 I 347
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 20/163 (12%)
Query: 231 VKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY--LNF-DIYDLELSAVH---SN 284
V+ D ++ +G G LL GPPG GK+ L A++N LNF + EL ++ S
Sbjct: 30 VRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESE 89
Query: 285 SELRRVLLSTGNRSILVV--EDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD 342
+R+V N + V+ +++D + +V V+ + LL +D
Sbjct: 90 RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVV----------NQLLTEMD 139
Query: 343 GLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTP 385
GL + + I+ TN D +DPA+LRPGR+D +++ P
Sbjct: 140 GLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 221 KMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL---- 276
K+ + + ++K + + ++G +G LL GPPG GK+ L A++ +
Sbjct: 15 KLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAE 74
Query: 277 --ELSAVHSNSELRRVLLSTGNRS--ILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQV 332
E+ + +R + R+ I+ +++ID + + TT++ Q
Sbjct: 75 FVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAV-----GKKRSTTMSGFSNTEEEQ- 128
Query: 333 TLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCT 384
TL+ LL +DG+ ++ D I++ +TN D LD A++RPGR+D H+++ T
Sbjct: 129 TLNQLLVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAA 264
N TF + E + + E +E F+K + R+G +G LL GPPGTGK+ L A
Sbjct: 10 NKRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARA 68
Query: 265 MSNYLNFDIYDL------ELSAVHSNSELRRVLLSTGNRS--ILVVEDIDCSLELEDRQA 316
++ N + + EL + +R + + I+ +++ID
Sbjct: 69 VAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV-------G 121
Query: 317 QPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDV 376
+ + + TL+ LL +DG S G I++ TN D LDPA+LRPGR D
Sbjct: 122 RHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI--IVMAATNRPDILDPALLRPGRFDK 179
Query: 377 HIYM 380
I +
Sbjct: 180 KIVV 183
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 30/182 (16%)
Query: 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN 270
D +E+++++ I E +E + + Y +G +G +LYG PGTGK+ L A++N +
Sbjct: 183 DIGGLESQIQE-IKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241
Query: 271 FDIYDLELSAVHSNSELRRVLLSTGNR--------------SILVVEDIDCSLELEDRQA 316
+ SEL + L G R SI+ +++ID + ++
Sbjct: 242 ATFLRI------VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDA---IGTKRY 292
Query: 317 QPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDV 376
+ R +Q T+ LLN LDG + GD ++I TN + LDPA++RPGR+D
Sbjct: 293 DSNSGGE----REIQRTMLELLNQLDG-FDDRGDVKVI-MATNKIETLDPALIRPGRIDR 346
Query: 377 HI 378
I
Sbjct: 347 KI 348
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAA 264
N TF + E + + E +E F+K + R+G +G LL GPPGTG + L A
Sbjct: 10 NKRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGATLLARA 68
Query: 265 MSNYLNFDIYDL------ELSAVHSNSELRRVLLSTGNRS--ILVVEDIDCSLELEDRQA 316
++ N + + EL + +R + + I+ +++ID
Sbjct: 69 VAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV-------G 121
Query: 317 QPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDV 376
+ + + TL+ LL +DG S G I++ TN D LDPA+LRPGR D
Sbjct: 122 RHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDK 179
Query: 377 HIYM 380
I +
Sbjct: 180 KIVV 183
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 242 KAWKRGYLLYGPPGTGKSSL---IAAMSNYLNFDIYDLELSA--VHSNSELRRVLLSTGN 296
+A RG LL+GPPG GK+ L +AA SN F+I L++ V +L R L +
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
Query: 297 R---SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERI 353
SI+ ++ +D SL E R+ + LK + L DG+ S GD+R+
Sbjct: 205 ELQPSIIFIDQVD-SLLCERREGEHDASRRLK---------TEFLIEFDGVQ-SAGDDRV 253
Query: 354 IVF-TTNHKDRLDPAVLRPGRMDVHIYMS 381
+V TN LD AVLR R +Y+S
Sbjct: 254 LVMGATNRPQELDEAVLR--RFIKRVYVS 280
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY 268
TF +A E K+ + E +E +++ ++++G +G L+ GPPGTGK+ L A++
Sbjct: 10 TFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 269 LNFDIYDLELSA-----VHSNSELRRVLLSTGNRS---ILVVEDIDCSLELEDRQAQPTT 320
+ + S V + R + ++ I+ +++ID RQ
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV----GRQ---RG 121
Query: 321 VNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT-TNHKDRLDPAVLRPGRMDVHIY 379
+ + TL+ +L +DG G+E IIV TN D LDPA+LRPGR D +
Sbjct: 122 AGLGGGHDEREQTLNQMLVEMDGFE---GNEGIIVIAATNRPDVLDPALLRPGRFDRQVV 178
Query: 380 MS 381
+
Sbjct: 179 VG 180
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
Query: 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY 268
T++ + ++K+ + E ++ V+ D + + G +G L YGPPG GK+ L A++N
Sbjct: 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72
Query: 269 LNFDIYDLE----LSAVHSNSELR-RVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNV 323
+ ++ L+ SE R + ++ V D EL D A+ N+
Sbjct: 73 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFD---EL-DSIAKARGGNI 128
Query: 324 LKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYM 380
++ +L +DG+ S I+ TN D +DPA+LRPGR+D IY+
Sbjct: 129 GDGGGAADRVINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 183
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY 268
T++ + ++K+ + E ++ V+ D + + G +G L YGPPG GK+ L A++N
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 269 L--NF-DIYDLELSAV---HSNSELRRVL--LSTGNRSILVVEDIDCSLELEDRQAQPTT 320
NF I EL + S + +R + +L +++D A+
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI-------AKARG 587
Query: 321 VNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYM 380
N+ ++ +L +DG+ S I+ TN D +DPA+LRPGR+D IY+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 24/170 (14%)
Query: 217 AELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDI 273
A++K+M+ E ++ ++ +G RG LLYGPPGTGK+ + A++N F I
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 274 YDLELS---AVHSNSELRRVL--LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLR 328
E+ A S S LR+ +I+ ++++D ++ +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRI----- 324
Query: 329 PMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
+S LL +DGL I++ TN + +DPA+ R GR D +
Sbjct: 325 -----VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREV 367
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY 268
T++ + ++K+ + E ++ V+ D + + G +G L YGPPG GK+ L A++N
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 269 L--NF-DIYDLELSAV---HSNSELRRVL--LSTGNRSILVVEDIDCSLELEDRQAQPTT 320
NF I EL + S + +R + +L +++D A+
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI-------AKARG 587
Query: 321 VNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYM 380
N+ ++ +L +DG+ S I+ TN D +DPA+LRPGR+D IY+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 24/170 (14%)
Query: 217 AELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDI 273
A++K+M+ E ++ ++ +G RG LLYGPPGTGK+ + A++N F I
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 274 YDLELS---AVHSNSELRRVL--LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLR 328
E+ A S S LR+ +I+ ++++D ++ +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRI----- 324
Query: 329 PMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
+S LL +DGL I++ TN + +DPA+ R GR D +
Sbjct: 325 -----VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREV 367
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 246 RGYLLYGPPGTGKSSLIAAMSNYLN---FDIYDLELSAVHSNSELRRV-----LLSTGNR 297
+G LLYGPPGTGK+ A++N + + EL + R V + T
Sbjct: 244 KGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKA 303
Query: 298 SILVVEDIDC--SLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIV 355
I+ ++ID +D V Q T+ L+ LDG + G+ +++
Sbjct: 304 CIIFFDEIDAVGGARFDDGAGGDNEV---------QRTMLELITQLDG-FDPRGNIKVM- 352
Query: 356 FTTNHKDRLDPAVLRPGRMDVHIYMS 381
F TN + LDPA+LRPGR+D + S
Sbjct: 353 FATNRPNTLDPALLRPGRIDRKVEFS 378
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 19/160 (11%)
Query: 230 FVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN-----YLNFDIYDLELSAVHSN 284
F+K + +G +G LL GPPG GK+ L A++ ++ D V
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 285 SELRRVLLSTGNR---SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341
+ R L T R I+ +++ID + V + TL+ LL +
Sbjct: 109 AARVRDLFETAKRHAPCIVFIDEIDAV-------GRKRGSGVGGGNDEREQTLNQLLVEM 161
Query: 342 DGLWSSCGDERIIVF-TTNHKDRLDPAVLRPGRMDVHIYM 380
DG D I+V TN D LDPA+LRPGR D I +
Sbjct: 162 DGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAI 198
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 19/160 (11%)
Query: 230 FVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN-----YLNFDIYDLELSAVHSN 284
F+K + +G +G LL GPPG GK+ L A++ ++ D V
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 285 SELRRVLLSTGNR---SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341
+ R L T R I+ +++ID + V + TL+ LL +
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAV-------GRKRGSGVGGGNDEREQTLNQLLVEM 170
Query: 342 DGLWSSCGDERIIVF-TTNHKDRLDPAVLRPGRMDVHIYM 380
DG D I+V TN D LDPA+LRPGR D I +
Sbjct: 171 DGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 19/160 (11%)
Query: 230 FVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN-----YLNFDIYDLELSAVHSN 284
F+K + +G +G LL GPPG GK+ L A++ ++ D V
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 285 SELRRVLLSTGNR---SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341
+ R L T R I+ +++ID + + + V R + TL+ LL +
Sbjct: 94 AARVRDLFETAKRHAPCIVFIDEIDAV-----GRKRGSGVGGGNDER--EQTLNQLLVEM 146
Query: 342 DGLWSSCGDERIIVF-TTNHKDRLDPAVLRPGRMDVHIYM 380
DG D I+V TN D LDPA+LRPGR D I +
Sbjct: 147 DGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAI 183
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 19/160 (11%)
Query: 230 FVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN-----YLNFDIYDLELSAVHSN 284
F+K + +G +G LL GPPG GK+ L A++ ++ D V
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 285 SELRRVLLSTGNR---SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341
+ R L T R I+ +++ID + + + V R + TL+ LL +
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAV-----GRKRGSGVGGGNDER--EQTLNQLLVEM 170
Query: 342 DGLWSSCGDERIIVF-TTNHKDRLDPAVLRPGRMDVHIYM 380
DG D I+V TN D LDPA+LRPGR D I +
Sbjct: 171 DGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 217 AELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDI 273
A++K+M+ E ++ ++ +G RG LLYGPPGTGK+ + A++N F I
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 274 YDLELS---AVHSNSELRRVL--LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLR 328
E+ A S S LR+ +I+ ++++D ++ +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRI----- 324
Query: 329 PMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCG 387
+S LL +DGL I++ TN + +DPA+ R GR D + + G
Sbjct: 325 -----VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 217 AELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDI 273
A++K+M+ E ++ ++ +G RG LLYGPPGTGK+ + A++N F I
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 274 YDLELS---AVHSNSELRRVL--LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLR 328
E+ A S S LR+ +I+ ++++D ++ +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRI----- 324
Query: 329 PMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCG 387
+S LL +DGL I++ TN + +DPA+ R GR D + + G
Sbjct: 325 -----VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 217 AELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDI 273
A++K+M+ E ++ ++ +G RG LLYGPPGTGK+ + A++N F I
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 274 YDLELS---AVHSNSELRRVL--LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLR 328
E+ A S S LR+ +I+ ++++D ++ +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRI----- 324
Query: 329 PMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCG 387
+S LL +DGL I++ TN + +DPA+ R GR D + + G
Sbjct: 325 -----VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 217 AELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDI 273
A++K+M+ E ++ ++ +G RG LLYGPPGTGK+ + A++N F I
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 274 YDLELS---AVHSNSELRRVL--LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLR 328
E+ A S S LR+ +I+ ++++D ++ +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRI----- 324
Query: 329 PMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCG 387
+S LL +DGL I++ TN + +DPA+ R GR D + + G
Sbjct: 325 -----VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 21/149 (14%)
Query: 242 KAWKRGYLLYGPPGTGKSSLIAAM-----SNYLNFDIYDLELSAVHSNSELRRVLLSTGN 296
+A +G LL+GPPG GK+ L A+ + +LN L V +L R L +
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 297 R---SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERI 353
SI+ ++++D L + R ++ L+ F DGL + +RI
Sbjct: 111 HMQPSIIFIDEVDSLLSERSSSEHEAS-------RRLKTEF--LVEF-DGLPGNPDGDRI 160
Query: 354 IVF-TTNHKDRLDPAVLRPGRMDVHIYMS 381
+V TN LD A LR R +Y+S
Sbjct: 161 VVLAATNRPQELDEAALR--RFTKRVYVS 187
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 249 LLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN-SELRRVL------LSTGNRSILV 301
+L+GPPGTGK++L ++ Y N D+ +SAV S E+R + + G R+IL
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADVE--RISAVTSGVKEIREAIERARQNRNAGRRTILF 111
Query: 302 VEDI 305
V+++
Sbjct: 112 VDEV 115
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 18/133 (13%)
Query: 246 RGYLLYGPPGTGKS---SLIAAMSNYLNFDIYDLELSA--VHSNSELRRVLLSTG---NR 297
+G LL+GPPGTGK+ IA+ S F I L++ V ++ R L +
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQP 177
Query: 298 SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357
+++ +++ID SL + + + +K + L LDG +S D ++V
Sbjct: 178 AVIFIDEID-SLLSQRGDGEHESSRRIK---------TEFLVQLDGATTSSEDRILVVGA 227
Query: 358 TNHKDRLDPAVLR 370
TN +D A R
Sbjct: 228 TNRPQEIDEAARR 240
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 42/204 (20%)
Query: 242 KAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDI--YDLELSAVHSNSELRR--VLLSTGNR 297
K R LL GPPGTGK++L A++ L + + S V+S +E+++ VL+ R
Sbjct: 60 KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS-TEIKKTEVLMENFRR 118
Query: 298 SI-LVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERI--- 353
+I L +++ E E + P P+ T+S + + GL ++ G +++
Sbjct: 119 AIGLRIKETKEVYEGEVTELTPCETE--NPMGGYGKTIS---HVIIGLKTAKGTKQLKLD 173
Query: 354 -IVFTTNHKDRLDP-----------AVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH 401
+F + K+R++ AV R GR D +Y T FD A Y+
Sbjct: 174 PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCD-----TYATE--FDLEAEEYV----- 221
Query: 402 PL----IYEIKEIMQNVRVTPADV 421
PL +++ KEI+Q+V + DV
Sbjct: 222 PLPKGDVHKKKEIIQDVTLHDLDV 245
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 227 LERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN-----------YLNFDIYD 275
+E F D+ + A ++G LYG G GKS L+AAM++ L+F +
Sbjct: 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193
Query: 276 LELSAVHSNSELRRVLLSTGNRSILVVEDIDC 307
+++ SN ++ + + N +L+++DI
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGA 225
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 30/171 (17%)
Query: 246 RGYLLYGPPGTGKSSLIAAM------SNYLNFDIYDLELSAVHSNSELRRVL--LSTGNR 297
RG LL+GPPGTGKS L A+ S + + DL + + +L + L L+ N+
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 298 -SILVVEDID--CS--LELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDER 352
SI+ +++ID C E E A+ L ++ + V G+L
Sbjct: 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL-------------- 151
Query: 353 IIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL 403
++ TN LD A+ R R + IY+ P + +LG T + L
Sbjct: 152 -VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL 199
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 233 RKDYYRRVGKAWK---RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRR 289
+K+ ++ GK R +LYGPPG GK++ ++ L +DI + S V S +
Sbjct: 62 KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS-----K 116
Query: 290 VLLSTGNRSIL 300
LL+ G ++ L
Sbjct: 117 TLLNAGVKNAL 127
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 42/198 (21%)
Query: 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-----NSELRRVLLSTGNR---S 298
G LLYGPPGTGKS L A++ N + + S + S + +L + L + S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 299 ILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358
I+ ++++D L + + + + + V ++G+ N G+ +++ T
Sbjct: 122 IIFIDEVDA---LTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV--------LVLGAT 170
Query: 359 NHKDRLDPAVLRPGRMDVHIYMSYC---------------TPC-----GFDTLAANYLGI 398
N +LD A+ R R + IY+ TPC + TL A G
Sbjct: 171 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGY 228
Query: 399 TDHPLIYEIKE-IMQNVR 415
+ + +K+ +MQ +R
Sbjct: 229 SGSDIAVVVKDALMQPIR 246
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270
RG LL+GPPGTGKS L A++ N
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEAN 192
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 235 DYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN 270
+ ++RV + L+ GP G+GKS+ +AAM +YLN
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 42/198 (21%)
Query: 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-----NSELRRVLLSTGNR---S 298
G LLYGPPGTGKS L A++ N + + S + S + +L + L + S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 130
Query: 299 ILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358
I+ ++ +D L + + + + + V ++G+ N G+ +++ T
Sbjct: 131 IIFIDQVDA---LTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV--------LVLGAT 179
Query: 359 NHKDRLDPAVLRPGRMDVHIYMSYC---------------TPC-----GFDTLAANYLGI 398
N +LD A+ R R + IY+ TPC + TL A G
Sbjct: 180 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGY 237
Query: 399 TDHPLIYEIKE-IMQNVR 415
+ + +K+ +MQ +R
Sbjct: 238 SGSDIAVVVKDALMQPIR 255
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 42/198 (21%)
Query: 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-----NSELRRVLLSTGNR---S 298
G LLYGPPGTGKS L A++ N + + S + S + +L + L + S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 112
Query: 299 ILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358
I+ ++ +D L + + + + + V ++G+ N G+ +++ T
Sbjct: 113 IIFIDQVDA---LTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV--------LVLGAT 161
Query: 359 NHKDRLDPAVLRPGRMDVHIYMSYC---------------TPC-----GFDTLAANYLGI 398
N +LD A+ R R + IY+ TPC + TL A G
Sbjct: 162 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGY 219
Query: 399 TDHPLIYEIKE-IMQNVR 415
+ + +K+ +MQ +R
Sbjct: 220 SGSDIAVVVKDALMQPIR 237
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279
G LLYGPPGTGKS L A++ N + + S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 16/83 (19%)
Query: 201 WITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSS 260
W+ P T D + + E +I + +FV GK L YGPPGTGK+S
Sbjct: 15 WVEKYRPETLDEVYGQNE----VITTVRKFVDE-------GKLPH--LLFYGPPGTGKTS 61
Query: 261 LIAAMSNYL---NFDIYDLELSA 280
I A++ + N+ LEL+A
Sbjct: 62 TIVALAREIYGKNYSNMVLELNA 84
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 250 LYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELR 288
L GPPG GK+SL +++ L + L V SE+R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 239 RVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD----------IYDLELSAVHS 283
R GK R L+ G PGTGK+++ M+ L D I+ LE+S +
Sbjct: 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA 118
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275
A KR L GP G GKS++ ++ LN + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 242 KAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDI 273
K R LL GPPGTGK++L A++ L +
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 249 LLYGPPGTGKSSLIAAMSNYL 269
L YGPPGTGK+S I A++ L
Sbjct: 62 LFYGPPGTGKTSTILALTKEL 82
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 325 KPLRPMQVTLSGLLNFL---DGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
K +RPM V LSG LN D + ++ E + + + H D +D + +R G VHI
Sbjct: 45 KRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHI 101
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 228 ERFVKRKDYYRRVGKAWKRGY---LLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN 284
ER ++ Y KA K LL+GPPG GK++L +++ L ++ A+
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 285 SELRRVL---LSTGNRSILVVEDI 305
+L +L L G+ IL +++I
Sbjct: 78 GDLAAILANSLEEGD--ILFIDEI 99
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 201 WITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSS 260
W+ P T D + + E +I+ L+ +V+RK+ L GPPGTGK++
Sbjct: 7 WVEKYRPRTLDEVVGQDE----VIQRLKGYVERKNIPH---------LLFSGPPGTGKTA 53
Query: 261 LIAAMSNYL 269
A++ L
Sbjct: 54 TAIALARDL 62
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 228 ERFVKRKDYYRRVGKAWKRGY---LLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN 284
ER ++ Y KA K LL+GPPG GK++L +++ L ++ A+
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 285 SELRRVL---LSTGNRSILVVEDI 305
+L +L L G+ IL +++I
Sbjct: 78 GDLAAILANSLEEGD--ILFIDEI 99
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 201 WITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSS 260
W+ P T D + + E +I+ L+ +V+RK+ L GPPGTGK++
Sbjct: 7 WVEKYRPRTLDEVVGQDE----VIQRLKGYVERKNIPH---------LLFSGPPGTGKTA 53
Query: 261 LIAAMSNYL 269
A++ L
Sbjct: 54 TAIALARDL 62
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 228 ERFVKRKDYYRRVGKAWKRGY---LLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN 284
ER ++ Y KA K LL+GPPG GK++L +++ L ++ A+
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 285 SELRRVL---LSTGNRSILVVEDI 305
+L +L L G+ IL +++I
Sbjct: 78 GDLAAILANSLEEGD--ILFIDEI 99
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 249 LLYGPPGTGKSSLIAAMSNYLN 270
L+ GP G+GKS+ IA+M +Y+N
Sbjct: 140 LVTGPTGSGKSTTIASMIDYIN 161
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 245 KRGYLLYGPPGTGKSSLIAAMSNYL-NFDIYDL 276
KRG +L GPPG+GK+ + M+N L N +YD+
Sbjct: 1048 KRGIILCGPPGSGKTMI---MNNALRNSSLYDV 1077
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 245 KRGYLLYGPPGTGKSSLIAAMSNYL-NFDIYDL 276
KRG +L GPPG+GK+ + M+N L N +YD+
Sbjct: 1267 KRGIILCGPPGSGKTMI---MNNALRNSSLYDV 1296
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 201 WITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSS 260
+ F P + D + +KK + LE R + V LL GPPG GK++
Sbjct: 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKTT 66
Query: 261 LIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDI 305
L +++ L +I+ + ++ +L S +L +++I
Sbjct: 67 LAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSL 261
+ F P + D + +KK + LE R + V LL GPPG GK++L
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKTTL 67
Query: 262 IAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDI 305
+++ L +I+ + ++ +L S +L +++I
Sbjct: 68 AHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSL 261
+ F P + D + +KK + LE R + V LL GPPG GK++L
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKTTL 67
Query: 262 IAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDI 305
+++ L +I+ + ++ +L S +L +++I
Sbjct: 68 AHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSL 261
+ F P + D + +KK + LE R + V LL GPPG GK++L
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKTTL 67
Query: 262 IAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDI 305
+++ L +I+ + ++ +L S +L +++I
Sbjct: 68 AHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSL 261
+ F P + D + +KK + LE R + V LL GPPG GK++L
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKTTL 67
Query: 262 IAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDI 305
+++ L +I+ + ++ +L S +L +++I
Sbjct: 68 AHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269
KR LL G PGTGKS L AM+ L
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELR 288
Y++ P G GKSSLI A+ +YD ++S H+ + R
Sbjct: 7 YIVSAPSGAGKSSLIQALLK--TQPLYDTQVSVSHTTRQPR 45
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELR 288
Y++ P G GKSSLI A+ +YD ++S H+ + R
Sbjct: 19 YIVSAPSGAGKSSLIQALLK--TQPLYDTQVSVSHTTRQPR 57
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 119 KQVTRQVESTQYVSYTGQSTKMQSEIRYFNLTFHKQHKDKVLNSYFPYILRKSKSAQEEN 178
+++ R Y S T +Y F K ++D VL +I + S E
Sbjct: 354 EEIIRNCSQKVYESMKKNVTAFMKLQQYMPAVFAKAYEDTVL-----FIYNRLISLNEVG 408
Query: 179 KTLKLYSLNQDHARRFGLDSWHWITFNHPATFDT 212
L YS++ D F L ++FN +T DT
Sbjct: 409 SDLHYYSISCDKFHEFNLKRVGTLSFNATSTHDT 442
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSL 261
+ F P + D + +KK + LE R + V LL GPPG G+++L
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGRTTL 67
Query: 262 IAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDI 305
+++ L +I+ + ++ +L S +L +++I
Sbjct: 68 AHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,627,161
Number of Sequences: 62578
Number of extensions: 518095
Number of successful extensions: 1459
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 83
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)