BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012846
(455 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 115/189 (60%), Gaps = 14/189 (7%)
Query: 201 WITFNHPAT---FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTG 257
W F HP + ++ +E+ +KKMI +D+ F++ +Y G ++RGYLLYGPPG+G
Sbjct: 195 WKPFGHPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSG 254
Query: 258 KSSLIAAMSNYLNFDIYDLELSAVH-SNSELRRVLLSTGNRSILVVEDIDCSLELEDRQA 316
K+S + A++ L++DI L L+ ++ L +L + ++++++ED+D + + +R
Sbjct: 255 KTSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSG 314
Query: 317 QPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDV 376
+ VT SGLLN LDG+ SS DERII TTNH ++LDPA++RPGR+DV
Sbjct: 315 EVGFH--------ANVTFSGLLNALDGVTSS--DERIIFMTTNHPEKLDPALVRPGRVDV 364
Query: 377 HIYMSYCTP 385
Y+ TP
Sbjct: 365 KAYLGNATP 373
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 138/270 (51%), Gaps = 37/270 (13%)
Query: 175 QEENKTLKLYSLNQDHARRFGLDSWHWITFNHPA---TFDTLAMEAELKKMIIEDLERFV 231
+EE KTL S+ D W F HP ++ ++ ++II+D+++F+
Sbjct: 179 KEEGKTLIYTSMGTD-----------WRRFGHPRRKRPISSVILDKGKSELIIQDVKKFL 227
Query: 232 KRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-SNSELRRV 290
D+Y G ++RGYLLYGPPGTGKSS I A++ L I L L+ S++ L ++
Sbjct: 228 NNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICILNLAGKSVSDTSLNQL 287
Query: 291 LLSTGNRSILVVEDIDCSLEL--EDRQAQPTTVNVLK-----------------PLRPMQ 331
L + RSI+++EDID +++ D A+ + N
Sbjct: 288 LATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGLQYQGYYGNPSVSSGGSA 347
Query: 332 VTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTL 391
+T SGLLN LDG+ +S G RI+ TTNH ++LD ++RPGR+D+ I + C+ + +
Sbjct: 348 LTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRVDLQIEIGLCSSYQMEQM 405
Query: 392 AANYLGITDHPLIYEIKEIMQNVRVTPADV 421
+ TD L + E ++N + +PA +
Sbjct: 406 FLKFYP-TDFDLAKQFVEKLENYKFSPAQL 434
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 139/255 (54%), Gaps = 20/255 (7%)
Query: 201 WITFNHPAT---FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTG 257
W F P ++ +++ +K+ I++D+ F+K +Y G ++RGYLLYGPPG+G
Sbjct: 213 WRKFGQPKAKRMLPSVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSG 272
Query: 258 KSSLIAAMSNYLNFDIYDLELSAVH-SNSELRRVLLSTGNRSILVVEDIDCSLELEDRQA 316
K+S I A++ L+++I L LS + ++ L ++ + RSIL++EDID + +
Sbjct: 273 KTSFIQALAGELDYNICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAFNKRSQTG 332
Query: 317 QPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDV 376
+ + VT SGLLN LDG+ SS +E I TTNH ++LD A++RPGR+D
Sbjct: 333 EQGFHS--------SVTFSGLLNALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDY 382
Query: 377 HIYMSYCTPCGFDTLAAN-YLGITD--HPLIYEIKEIMQNVRVTPADVGEQLLKNED-PE 432
+++ TP + + Y G TD + +KE+ ++ V+ A + + N+D P
Sbjct: 383 KVFVGNATPYQVEKMFMKFYPGETDICKKFVNSVKEL--DITVSTAQLQGLFVMNKDAPH 440
Query: 433 IALKGLLEFLNAKLI 447
ALK + NA I
Sbjct: 441 DALKMVSSLRNANHI 455
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 147/283 (51%), Gaps = 35/283 (12%)
Query: 109 DHFDGVKLKWKQVTRQVESTQYVSYTGQSTKMQSEIRYFNLTFHKQHKDKVLNSYFPYIL 168
+HF + KW +V R + Q +Q+ + ++TF D+ + F IL
Sbjct: 103 NHFIWYQGKWIRVERNRDM--------QMVDLQTGTPWESVTFTALGTDRKV---FFNIL 151
Query: 169 RKSKS---AQEENKTLKLYSLNQDHARRFGLDSWHWITFNHPA---TFDTLAMEAELKKM 222
++++ QEE KT+ ++ + W TF +P D++ ++ L
Sbjct: 152 EEARALALQQEEGKTVMYTAVGSE-----------WRTFGYPRRRRPLDSVVLQQGLADR 200
Query: 223 IIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282
I++D+ F+ +Y G ++RGYLLYGPPG GKSS I A++ L I L L+
Sbjct: 201 IVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSS 260
Query: 283 SNSELRRVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341
+ + LLS +S++++ED+D + D + N +K ++T SGLLN L
Sbjct: 261 LSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVE----NPIKYQGLGRLTFSGLLNAL 316
Query: 342 DGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCT 384
DG+ S+ + RI+ TTN+ DRLDPA++RPGR+D+ Y+ YC+
Sbjct: 317 DGVAST--EARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCS 357
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 168/348 (48%), Gaps = 58/348 (16%)
Query: 109 DHFDGVKLKWKQVTRQVESTQYVSYTGQSTKMQSEIRYFNLTFHKQHKDKVLNSYFPYIL 168
+HF + KW +V R E Q +Q+ + ++TF D+ + F IL
Sbjct: 103 NHFIWYQGKWIRVERSREM--------QMIDLQTGTPWESVTFTALGTDRKV---FFNIL 151
Query: 169 RKSKS---AQEENKTLKLYSLNQDHARRFGLDSWHWITFNHPA---TFDTLAMEAELKKM 222
+++ QEE KT+ ++ + W F +P +++ +E + +
Sbjct: 152 EEARELALQQEEGKTVMYTAVGSE-----------WRPFGYPRRRRPLNSVVLEQGVTER 200
Query: 223 IIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282
I+ D+ F+ +Y G ++RGYLLYGPPG GKSS I A++ L I L L+
Sbjct: 201 IVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSICLLSLTDSS 260
Query: 283 SNSELRRVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341
+ + LLS +S++++ED+D + D A+ N +K ++T SGLLN L
Sbjct: 261 LSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAE----NPIKYQGLGRLTFSGLLNAL 316
Query: 342 DGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCT------------PCGFD 389
DG+ S+ + RI+ TTNH DRLDPA++RPGR+D+ Y+ +C+ P
Sbjct: 317 DGVAST--EARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCSRWQLTQMFQRFYPGQAT 374
Query: 390 TLAANYLGITDHPLIYEIKEIMQNVRVTPADV-GEQLLKNEDPEIALK 436
+LA N+ + + +++PA V G +L DP A++
Sbjct: 375 SLAENFAD----------RVLQATTQISPAQVQGYFMLYKNDPAGAIQ 412
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 145/283 (51%), Gaps = 35/283 (12%)
Query: 109 DHFDGVKLKWKQVTRQVESTQYVSYTGQSTKMQSEIRYFNLTFHKQHKDKVLNSYFPYIL 168
+HF + KW +V R E Q +Q+ + ++TF D+ + F IL
Sbjct: 103 NHFIWYRGKWIRVERSREM--------QMIDLQTGTPWESVTFTALGTDRKV---FFNIL 151
Query: 169 RKSKS---AQEENKTLKLYSLNQDHARRFGLDSWHWITFNHPA---TFDTLAMEAELKKM 222
+++ QEE KT+ ++ + W F +P +++ ++ L
Sbjct: 152 EEARELALQQEEGKTVMYTAVGSE-----------WRPFGYPRRRRPLNSVVLQQGLADR 200
Query: 223 IIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282
I+ D++ F+ +Y G ++RGYLLYGPPG GKSS I A++ L I L L+
Sbjct: 201 IVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSS 260
Query: 283 SNSELRRVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341
+ + LLS +S++++ED+D + D + N +K ++T SGLLN L
Sbjct: 261 LSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVE----NPVKYQGLGRLTFSGLLNAL 316
Query: 342 DGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCT 384
DG+ S+ + RI+ TTNH DRLDPA++RPGR+D+ Y+ YC+
Sbjct: 317 DGVAST--EARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCS 357
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 148/281 (52%), Gaps = 31/281 (11%)
Query: 109 DHFDGVKLKWKQVTRQVESTQYVSYTGQSTKMQSEIRYFNLTFHKQHKDKVLNSYFPYIL 168
+HF + KW ++ R E Q + + + ++TF ++ N +F IL
Sbjct: 103 NHFIWYRSKWIRIERNREK--------QMIDLHTGTPWESVTFTALGTNR--NIFFN-IL 151
Query: 169 RKSKS---AQEENKTLKLYSLNQDHARRFGLDSWHWITFNHPATFDTLAMEAELKKMIIE 225
++++ Q+ KT+ +Y+ R+FG ++ +E + + I++
Sbjct: 152 QEARELALKQQVGKTV-MYNAVGAEWRQFGFP-------RRRRPLSSVVLEQGISEKIVQ 203
Query: 226 DLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNS 285
D++ F++ +Y G ++RGYLLYGPPG GKSS I A++ L + I + LS +
Sbjct: 204 DVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLMSLSDSSLSD 263
Query: 286 ELRRVLLSTG-NRSILVVEDIDCSLELEDRQAQ-PTTVNVLKPLRPMQVTLSGLLNFLDG 343
+ LLS +SI+++ED+D + D Q PT + ++T SGLLN LDG
Sbjct: 264 DRLNHLLSVAPQQSIILLEDVDAAFVSRDLNKQNPTAYQGMG-----RLTFSGLLNALDG 318
Query: 344 LWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCT 384
+ S+ + RI+ TTNH DRLDPA++RPGR+DV Y+ +CT
Sbjct: 319 VAST--EARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCT 357
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 15/236 (6%)
Query: 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF 271
++ +E+ + + I++D++ F+ +Y G ++RGYLLYGPPG GKSS I A++ L +
Sbjct: 190 SVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGY 249
Query: 272 DIYDLELSAVH-SNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPM 330
I + LS S+ L +L +SI+++ED+D + R+ PT N L
Sbjct: 250 SICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDAA--FVSRELLPTE-NPLAYQGMG 306
Query: 331 QVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDT 390
++T SGLLN LDG+ SS + RI+ TTN +RLDPA++RPGR+D+ Y+ +C+
Sbjct: 307 RLTFSGLLNALDGVASS--EARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCSHWQLTQ 364
Query: 391 LAANYL-----GITDHPLIYEIKEIMQNVRVTPADV-GEQLLKNEDPEIALKGLLE 440
+ + DH + + + + ++ A V G +L DP A+K + E
Sbjct: 365 MFRRFYPQESAAEADH---FSEQALAAHTDLSAAQVQGHFMLYKTDPAGAIKNIAE 417
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 132/243 (54%), Gaps = 11/243 (4%)
Query: 200 HWITFNHPATFDTLA---MEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGT 256
+W F +P + +L+ + +LK +IED++ F+ + +YR G ++RGYLLYG PG
Sbjct: 173 NWERFGNPRSIRSLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGN 232
Query: 257 GKSSLIAAMSNYLNFDIYDLELSAVH-SNSELRRVLLSTGNRSILVVEDIDCSLELEDRQ 315
GKSSLI A++ LN DI + LS+ + ++ +L + +SIL++EDID + +
Sbjct: 233 GKSSLINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDIDAAFK---SH 289
Query: 316 AQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMD 375
N +T SGLLN LDG+ S G RI+ TTN + LD A++R GR+D
Sbjct: 290 RDNVDSNNNNSNNNNSLTYSGLLNALDGVASQEG--RILFMTTNKIELLDSALIREGRID 347
Query: 376 VHIYMSYCTPCGFDTLAANYLGI-TDHPLIYEIKEIMQNVRVTPADVGEQLLKN-EDPEI 433
+ I +S T L ++ + TD+ L E + + +++ + + LLK PE
Sbjct: 348 LKIKVSNATKSQAAQLFTHFYNLPTDNQLAIRFSENLHDHQLSMSQIQGFLLKYINSPEK 407
Query: 434 ALK 436
A++
Sbjct: 408 AIE 410
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 22/157 (14%)
Query: 261 LIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNR-SILVVEDIDCSLE-LEDRQAQP 318
+I A+S + I+ L L+ + ++EL +L + + +ILV+EDIDC+ E ++ R +
Sbjct: 1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEE 60
Query: 319 TTV-----------------NVLKPLRPM-QVTLSGLLNFLDGLWSSCGDERIIVFTTNH 360
TV + LK + + ++TLSG+LN LDG+++S G RI++ TTNH
Sbjct: 61 ETVVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNH 118
Query: 361 KDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397
+ LDPA++R GR+D+ I S C + N+ G
Sbjct: 119 SEVLDPALIRRGRIDMQIEFSNCDRYQIAKMYENFYG 155
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 89/188 (47%), Gaps = 23/188 (12%)
Query: 204 FNHPA----TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKS 259
FNH F +A E K+ I+E +F+K +Y R+G RG +L GPPGTGK+
Sbjct: 285 FNHETDIKIKFADVAGVDEAKEEIME-FVKFLKNPKFYERLGAKIPRGAILSGPPGTGKT 343
Query: 260 SLIAAMSNYLNFDIYDLELSA-----VHSNSELRRVLLSTGNRS---ILVVEDIDCSLEL 311
L A + N + S V R L +T ++ I+ +++ID +
Sbjct: 344 LLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKA 403
Query: 312 EDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT-TNHKDRLDPAVLR 370
R Q + + + TL+ LL +DG SS E I+VF TN D LDPA+LR
Sbjct: 404 RGRGGQFGSND------ERESTLNQLLVEMDGFTSS---EHIVVFAGTNRPDVLDPALLR 454
Query: 371 PGRMDVHI 378
PGR D I
Sbjct: 455 PGRFDRQI 462
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 17/187 (9%)
Query: 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN- 267
++D + E + I E +E+ +K + + +VG +G LLYGPPGTGK+ L A++N
Sbjct: 177 SYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANH 236
Query: 268 ----YLNFDIYDLELSAVHSNSELRRVLLSTGNR---SILVVEDIDCSLELEDRQAQPTT 320
++ +L + + L R L SI+ +++ID + R+ + T
Sbjct: 237 ADATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDA---IGARRMRDAT 293
Query: 321 VNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYM 380
R +Q TL+ LL +DG + D ++I TN KD LDPA+LRPGR D HI +
Sbjct: 294 SGD----REVQRTLTQLLAEMDG-FDPLDDIKVIA-ATNRKDILDPALLRPGRFDRHIKI 347
Query: 381 SYCTPCG 387
G
Sbjct: 348 PLPDEEG 354
>sp|Q5UPR4|YR776_MIMIV Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R776 PE=4 SV=1
Length = 314
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 14/148 (9%)
Query: 197 DSWHWITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGT 256
++W + P F + E++ +++D++ F++ +D YR +G ++RG LLYG G
Sbjct: 154 NNWSYPIIRRPCKFLDSNLTTEMRS-VLKDVDVFMRNEDTYRELGANYRRGMLLYGESGC 212
Query: 257 GKSSLIAAMSNYLNFDIYDLELSAVH-SNSELRRVLLSTGNRSILVVEDIDCSLELEDRQ 315
GK+ LI+ +SN D Y L L++ S+S L + + RSILV+E+I D+Q
Sbjct: 213 GKTGLISIISNKYGMDSYILNLNSKDMSDSVLISLASNVKARSILVIEEI-------DKQ 265
Query: 316 AQPTTVNVLKPLRPMQVTLSGLLNFLDG 343
+ N K V++ GLL+ LDG
Sbjct: 266 IETLNANGNK-----NVSIGGLLSALDG 288
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 18/198 (9%)
Query: 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMS 266
P TF+ +A E + E ++ F+K + Y+ +G +G LL GPPGTGK+ L A++
Sbjct: 247 PTTFEDVAGIEEAVDEVREVVD-FLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKAIA 305
Query: 267 NYLNFDIYDL------ELSAVHSNSELRRVLLSTGNRS--ILVVEDIDCSLELEDRQAQP 318
+ L E+ + +R + NR+ I+ ++++D +
Sbjct: 306 GEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDA-------LGKS 358
Query: 319 TTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
+ +V+ + TL+ LL +DG S+ G I+V TN + LDPA+LRPGR D H+
Sbjct: 359 RSGSVVGGHDEREQTLNALLVEMDGFDSNSG--VIVVAATNRPETLDPALLRPGRFDRHV 416
Query: 379 YMSYCTPCGFDTLAANYL 396
+ G + + A ++
Sbjct: 417 LVDRPDVAGREEILAVHV 434
>sp|D1CDT8|FTSH_THET1 ATP-dependent zinc metalloprotease FtsH OS=Thermobaculum terrenum
(strain ATCC BAA-798 / YNP1) GN=ftsH PE=3 SV=1
Length = 646
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 39/247 (15%)
Query: 159 VLNSYFPYI---------LRKSKSAQEENKTLKLYSLNQDHARRFGLDSWHWITFNHPAT 209
+L S+ P I + K++S+Q+ L+ L + A+R+ T + T
Sbjct: 147 ILISFGPTILFFLLFLWLISKAQSSQQ-----GLFGLGKSRAKRYN------ATESTRVT 195
Query: 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269
FD +A E K+ + E ++ F+K Y+R+G +G LL GPPGTGK+ L A++
Sbjct: 196 FDDVAGIEEAKQELAEIVD-FLKNPQKYQRLGGTIPKGVLLIGPPGTGKTLLARAVAGEA 254
Query: 270 NFDIYDLELSAVHSNSELRRVLLSTGNRSILVV-----EDIDCSLELEDRQA----QPTT 320
+ + S SE +++ G + + ++ C + +++ A + ++
Sbjct: 255 GVPFFSM------SGSEFVEMIVGVGAARVRELFQQAKKEAPCIIFVDELDAIGRRRGSS 308
Query: 321 VNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYM 380
+NV Q TL+ LL +DG S G I++ TN D LDPA+LRPGR D + +
Sbjct: 309 INVGGHDEREQ-TLNQLLVEMDGFDSRQG--VIVLAATNRPDVLDPALLRPGRFDRRVVV 365
Query: 381 SYCTPCG 387
G
Sbjct: 366 QRPDKVG 372
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 223 IIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282
I E +E +K + + +VG +G LLYGPPGTGK+ L A++ Y+ S V
Sbjct: 160 IKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVA-------YETNASFVR 212
Query: 283 -SNSELRRVLLSTGNRSI-----LVVEDIDCSLELE--DRQAQPTTVNVLKPLRPMQVTL 334
SEL + + G + + L E C + ++ D A T ++ R +Q TL
Sbjct: 213 VVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTL 272
Query: 335 SGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMS 381
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 273 MQLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 223 IIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282
I E +E +K + + +VG +G LLYGPPGTGK+ L A++ Y+ S V
Sbjct: 160 IKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVA-------YETNASFVR 212
Query: 283 -SNSELRRVLLSTGNRSI-----LVVEDIDCSLELE--DRQAQPTTVNVLKPLRPMQVTL 334
SEL + + G + + L E C + ++ D A T ++ R +Q TL
Sbjct: 213 VVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTL 272
Query: 335 SGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMS 381
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 273 MQLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 223 IIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282
I E +E +K + + +VG +G LLYGPPGTGK+ L A++ Y+ S V
Sbjct: 160 IKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVA-------YETNASFVR 212
Query: 283 -SNSELRRVLLSTGNRSI-----LVVEDIDCSLELE--DRQAQPTTVNVLKPLRPMQVTL 334
SEL + + G + + L E C + ++ D A T ++ R +Q TL
Sbjct: 213 VVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTL 272
Query: 335 SGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMS 381
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 273 MQLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 223 IIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282
I E +E +K + + +VG +G LLYGPPGTGK+ L A++ Y+ S V
Sbjct: 160 IKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVA-------YETNASFVR 212
Query: 283 -SNSELRRVLLSTGNRSI-----LVVEDIDCSLELE--DRQAQPTTVNVLKPLRPMQVTL 334
SEL + + G + + L E C + ++ D A T ++ R +Q TL
Sbjct: 213 VVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTL 272
Query: 335 SGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMS 381
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 273 MQLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 30/186 (16%)
Query: 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY 268
TFD +A + K+ + E +E +++ D + RVG RG LL GPPGTGK+ L A++
Sbjct: 174 TFDEVAGQTNAKREVQELVE-YLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGE 232
Query: 269 LNFDIYDLELSAVHSNSELRRVLLSTG--------------NRSILVVEDIDCSLELEDR 314
+ Y + S SE V + G + SI+ ++++D
Sbjct: 233 AGVNFYPM------SASEFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDSV------ 280
Query: 315 QAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRM 374
+ + TL+ +L +DG + D I++ TN D LDPA++RPGR
Sbjct: 281 -GRTRGAGYGGGHDEREQTLNQILAEMDGF--AGHDAVIVLAATNRPDVLDPALMRPGRF 337
Query: 375 DVHIYM 380
D H+ +
Sbjct: 338 DRHVTL 343
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 23/206 (11%)
Query: 183 LYSLNQDHARRFGLDSWHWITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGK 242
++S+ + A+ F D+ + TF +A AE K+ + E++ F+K + Y +G
Sbjct: 174 VFSVGKAKAQLFDKDN------DRKVTFKDVAGLAEAKQEV-EEIVSFLKNPEKYTELGG 226
Query: 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL------ELSAVHSNSELRRVLLSTGN 296
+G LL GPPGTGK+ L A++ N + L E+ S +R +
Sbjct: 227 KIPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKE 286
Query: 297 RS--ILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERII 354
+S I+ +++ID + A + + + TL+ LL +DG S+ G II
Sbjct: 287 KSPCIVFIDEIDAVGRARGKNANMNSND------ERENTLNQLLTEMDGFGSNSG--VII 338
Query: 355 VFTTNHKDRLDPAVLRPGRMDVHIYM 380
+ TN D LD A+LR GR D I++
Sbjct: 339 LAATNRADILDKALLRAGRFDRQIHV 364
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 15/166 (9%)
Query: 223 IIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282
I E +E +K + + +VG +G LLYGPPGTGK+ L A++ N +
Sbjct: 160 IKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRV------ 213
Query: 283 SNSELRRVLLSTGNRSI-----LVVEDIDCSLELE--DRQAQPTTVNVLKPLRPMQVTLS 335
SEL + + G + + L E C + ++ D A T ++ R +Q TL
Sbjct: 214 VGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLM 273
Query: 336 GLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMS 381
LL +DG + S GD +II TN D LDPA+LRPGR D I ++
Sbjct: 274 QLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIA 317
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 33/187 (17%)
Query: 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN 267
+T+D + + K I E +E VK + + +G A +G +LYGPPGTGK+ L A+++
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 268 YLNFDIYDLELSAVHSNSELRRVLLSTGNR--------------SILVVEDIDC--SLEL 311
+ + + S +EL + + G+R SI+ +++ID S +
Sbjct: 205 HTDCKFIRV------SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRV 258
Query: 312 EDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRP 371
E + V Q T+ LLN LDG +S + I+ TN D LDPA+LRP
Sbjct: 259 EGSGGGDSEV---------QRTMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRP 307
Query: 372 GRMDVHI 378
GR+D I
Sbjct: 308 GRIDRKI 314
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 29/173 (16%)
Query: 220 KKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279
K+ I E +E + + D Y+++G RG LLYGPPGTGK+ L+ A++N +
Sbjct: 175 KQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRV--- 231
Query: 280 AVHSNSELRRVLLSTGNR--------------SILVVEDIDCSLELEDRQAQPTTVNVLK 325
+ SE + L G R +I+ +++ID + + AQ T +
Sbjct: 232 ---NGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDA-IATKRFDAQ-TGAD--- 283
Query: 326 PLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
R +Q L LLN +DG S + ++ TN D LDPA+LRPGR+D I
Sbjct: 284 --REVQRILLELLNQMDGFEQSSNVK--VIMATNRADTLDPALLRPGRLDRKI 332
>sp|Q8W585|FTSH8_ARATH ATP-dependent zinc metalloprotease FTSH 8, chloroplastic
OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1
Length = 685
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 116/280 (41%), Gaps = 55/280 (19%)
Query: 131 VSYTGQSTKMQSEIRYFNLTF--HKQHKDK-------VLNSYFPYIL---------RKSK 172
V G S ++ ++R N+ F H +D+ + N FP IL R S
Sbjct: 129 VQLPGLSQELLQKLRAKNIDFAAHNAQEDQGSPILNLIGNLAFPVILIGGLFLLSRRSSG 188
Query: 173 SAQEENKTLKLYSLNQDHARRFGLDSWHWITFNHPATFDTLAMEAELKKMIIEDLERFVK 232
+ Q A+ F ++ +TF+ A D E K+ +E +E F+K
Sbjct: 189 GMGGPGGPGFPLQIGQSKAK-FQMEPNTGVTFDDVAGVD------EAKQDFMEVVE-FLK 240
Query: 233 RKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLL 292
+ + + VG +G LL GPPGTGK+ L A++ + + S SE + +
Sbjct: 241 KPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI------SGSEFVEMFV 294
Query: 293 STGNR--------------SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLL 338
G I+ V++ID RQ + T + R + TL+ LL
Sbjct: 295 GVGASRVRDLFKKAKENAPCIVFVDEIDAV----GRQ-RGTGIGGGNDER--EQTLNQLL 347
Query: 339 NFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
+DG + G I+V TN D LD A+LRPGR D +
Sbjct: 348 TEMDGFEGNTG--VIVVAATNRADILDSALLRPGRFDRQV 385
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 19/156 (12%)
Query: 235 DYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN--SELRRVLL 292
+ ++RVG +G LL+GPPGTGK+ L A+++ L+ + + SA+ E R++
Sbjct: 174 ELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIR 233
Query: 293 STGNRS------ILVVEDIDCSLELEDRQ-AQPTTVNVLKPLRPMQVTLSGLLNFLDGLW 345
N + I+ +++ID + R+ ++ T+ + R +Q TL LLN LDG +
Sbjct: 234 EMFNYARDHQPCIVFMDEIDA---IGGRRFSEGTSAD-----REIQRTLMELLNQLDG-F 284
Query: 346 SSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMS 381
S G ++I+ TN D LDPA+LRPGR+D I +
Sbjct: 285 DSLGKVKVIM-ATNRPDTLDPALLRPGRLDRKIEIG 319
>sp|Q67T82|FTSH2_SYMTH ATP-dependent zinc metalloprotease FtsH 2 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH2 PE=3 SV=1
Length = 587
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMS 266
P TF +A E+K + E++ ++K D YR +G +G LLYGPPGTGK+ L A++
Sbjct: 148 PVTFADVAGMDEVKGEL-EEIVDYLKNPDKYRAIGARIPKGVLLYGPPGTGKTLLARAVA 206
Query: 267 NYLNFDIYDLELSA-----VHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTV 321
+ L S+ V + R L + ++ + ID E++ Q +
Sbjct: 207 GEAGVPFFALSGSSFVELFVGMGASRVRELFAQARKNAPCIVFID---EIDAVGRQRGSA 263
Query: 322 NVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMS 381
V+ + TL+ LL +DG + G I++ TN D LD A+LRPGR D I +
Sbjct: 264 AVVGGHDEREQTLNQLLTEMDGFGAYEG--VIVMAATNRPDVLDKALLRPGRFDRQIPVG 321
Query: 382 YCTPCG 387
G
Sbjct: 322 PPDAAG 327
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 29/173 (16%)
Query: 220 KKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279
K+ I E +E + + D YR++G +G LLYGPPGTGK+ L+ A++N+ +
Sbjct: 143 KQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRV--- 199
Query: 280 AVHSNSELRRVLLSTGNR--------------SILVVEDIDCSLELEDRQAQPTTVNVLK 325
+ SE + L G R SI+ ++++D S+ + A T+ +
Sbjct: 200 ---NGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVD-SIATKRFDAS-TSAD--- 251
Query: 326 PLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
R +Q L LLN +DG + + ++ TN D +DPA+LRPGR+D I
Sbjct: 252 --REVQRVLIELLNQMDGFDPAANVK--VIMATNRADTIDPALLRPGRLDRKI 300
>sp|P36966|PEX6_YARLI Peroxisomal biogenesis factor 6 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PEX6 PE=3 SV=2
Length = 1024
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN 270
D ME +KK I++ +E +K ++ G + G L YGPPGTGK+ L A++ +
Sbjct: 720 DVGGMEG-VKKDILDTIETPLKYPHWFSD-GVKKRSGILFYGPPGTGKTLLAKAIATTFS 777
Query: 271 FDIYD------LELSAVHSNSELRRVLLSTGNRSILVV--EDIDCSLELEDRQAQPTTVN 322
+ + L + S + +RRV + VV +++D Q V
Sbjct: 778 LNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVVFFDELDSVAPQRGNQGDSGGV- 836
Query: 323 VLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMS 381
M +S LL LDG+ ++ G+ +V TN D LD A+LRPGR D +Y+
Sbjct: 837 -------MDRIVSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKMLYLG 888
>sp|Q7UUZ7|FTSH1_RHOBA ATP-dependent zinc metalloprotease FtsH 1 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH1 PE=3 SV=1
Length = 672
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 44/244 (18%)
Query: 183 LYSLNQDHARRFGLDSWHWITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGK 242
L ++ A+RF + ITFN A + ++A+L++++ F+K + ++++G
Sbjct: 176 LSGFSKSPAKRFEA-TDKVITFNDVAGLE--GVKADLQEIV-----DFLKTPEKFQKLGG 227
Query: 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA-----VHSNSELRRVLLSTGNR 297
+G LL GPPGTGK+ L A++ + + + S V + R L T
Sbjct: 228 QVPKGVLLNGPPGTGKTLLARAVAGEADVPFFSVNGSEFIQMFVGVGASRVRDLFKTAKE 287
Query: 298 ---SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERII 354
SI+ +++ID + + + TL+ +L +DG + I+
Sbjct: 288 QSPSIIFIDEIDAV-------GRQRGAGLGGGHDEREQTLNQILGEMDGFGGAQA--VIV 338
Query: 355 VFTTNHKDRLDPAVLRPGRMDVHIYMSYCT---------------PCGFDT----LAANY 395
+ TN D LDPA+LRPGR D H+ + T P G D LAA
Sbjct: 339 IAATNRPDVLDPALLRPGRFDRHVTVGRPTMKGREEIFKVHVRDVPLGDDVDLHRLAAGT 398
Query: 396 LGIT 399
+G+T
Sbjct: 399 VGLT 402
>sp|B1AI94|FTSH_UREP2 ATP-dependent zinc metalloprotease FtsH OS=Ureaplasma parvum
serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=ftsH
PE=3 SV=1
Length = 721
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 21/180 (11%)
Query: 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269
F +A AE+K+ +IE ++ F+K Y G +G +LYGPPGTGK+ + A++
Sbjct: 238 FSDVAGIAEVKEELIEIVD-FLKEPKKYVAAGARIPKGVMLYGPPGTGKTLIAKAVAGEA 296
Query: 270 NFDIYD-----LELSAVHSNSELRRVLLSTGNRS---ILVVEDIDCSLELEDRQAQPTTV 321
N + E + V + R L +S I+ +++ID + R T V
Sbjct: 297 NVPFFQTTGSSFEDTFVGVGARRVRELFEKARKSAPAIIFIDEIDSV--AKKRGNSLTAV 354
Query: 322 NVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMS 381
T++ LL+ LDG +S G I++ TN D LD A+LRPGR D I ++
Sbjct: 355 --------QDQTINQLLSELDGFDTSSG--VIVMAATNRLDTLDDAILRPGRFDRQISVN 404
>sp|Q67LC0|FTSH1_SYMTH ATP-dependent zinc metalloprotease FtsH 1 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH1 PE=3 SV=1
Length = 594
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 119/267 (44%), Gaps = 36/267 (13%)
Query: 183 LYSLNQDHAR--RFGLDSWHWITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRV 240
L ++ Q AR R G S +T A D ++AEL+++I F++ + YR +
Sbjct: 125 LLTMEQSPARLYRVGEAS---VTLQDVAGLDE--VKAELQEVI-----DFLREPERYRAM 174
Query: 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD------LELSAVHSNSELRRVLLST 294
G RG LL GPPGTGK+ L A++ + +EL A + +R L
Sbjct: 175 GARIPRGILLSGPPGTGKTLLARALAGEAGVPFFSASGSDFVELFAGTGAARVR-ALFDR 233
Query: 295 GNRS---ILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDE 351
++ I+ +++ID A T + T++ LL +DG G+
Sbjct: 234 ARKAAPCIVFIDEIDALARRRGVGAGGGTEE-------REQTINQLLVEMDGF--DSGEG 284
Query: 352 RIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIM 411
I+V TN D LDPAVLRPGR D H+ + G + + A + + + +
Sbjct: 285 VIVVAATNRPDVLDPAVLRPGRFDRHLTVDPPDRKGREQILAVH---AREKRLSQAVALA 341
Query: 412 QNVRVTPADVGEQL--LKNEDPEIALK 436
+ R+TP G L L NE +A++
Sbjct: 342 EVARLTPGFTGADLANLLNEAALLAVR 368
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
GN=Pros45 PE=1 SV=2
Length = 405
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 33/174 (18%)
Query: 221 KMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA 280
K I E +E VK + + +G A +G LLYGPPGTGK+ L A++++ +
Sbjct: 158 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV---- 213
Query: 281 VHSNSELRRVLLSTGNR--------------SILVVEDIDC--SLELEDRQAQPTTVNVL 324
S SEL + + G+R SI+ +++ID S +E + V
Sbjct: 214 --SGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV--- 268
Query: 325 KPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
Q T+ LLN LDG ++ + ++ TN D LDPA+LRPGR+D I
Sbjct: 269 ------QRTMLELLNQLDGFEATKNIK--VIMATNRIDILDPALLRPGRIDRKI 314
>sp|Q6FW67|PEX6_CANGA Peroxisomal biogenesis factor 6 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=PEX6 PE=3 SV=1
Length = 1017
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN 267
T+D + + +K I+E ++ +K + + G + G L YGPPGTGK+ L A++
Sbjct: 715 VTWDDVGGLSSVKDAIMETIDLPLKHPELFGS-GLKKRSGILFYGPPGTGKTLLAKAIAT 773
Query: 268 YLNFDIYD------LELSAVHSNSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPT 319
+ + + L + S + +RRV ++ +++D Q
Sbjct: 774 NFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDEVDSVAPKRGNQGDSG 833
Query: 320 TVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIY 379
V M +S LL LDG+ SS GD I+ TN D LD A+LRPGR D IY
Sbjct: 834 GV--------MDRIVSQLLAELDGM-SSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIY 884
Query: 380 M 380
+
Sbjct: 885 L 885
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1
Length = 402
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 33/174 (18%)
Query: 221 KMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA 280
K I E +E VK + + +G A +G LLYGPPGTGK+ L A++++ +
Sbjct: 155 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV---- 210
Query: 281 VHSNSELRRVLLSTGNR--------------SILVVEDIDC--SLELEDRQAQPTTVNVL 324
S SEL + + G+R SI+ +++ID S +E + V
Sbjct: 211 --SGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV--- 265
Query: 325 KPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
Q T+ LLN LDG ++ + ++ TN D LDPA+LRPGR+D I
Sbjct: 266 ------QRTMLELLNQLDGFEATKNIK--VIMATNRIDILDPALLRPGRIDRKI 311
>sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1
Length = 695
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAA 264
N TFD +A E K+ +E +E F+K+ + + VG +G LL GPPGTGK+ L A
Sbjct: 221 NTGVTFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKA 279
Query: 265 MSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSIL-----VVEDIDCSLELE--DRQAQ 317
++ + + S SE + + G + E+ C + ++ D +
Sbjct: 280 IAGEAGVPFFSI------SGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGR 333
Query: 318 PTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVH 377
+ + TL+ LL +DG + G I+V TN D LD A+LRPGR D
Sbjct: 334 QRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG--VIVVAATNRADILDSALLRPGRFDRQ 391
Query: 378 I 378
+
Sbjct: 392 V 392
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 29/173 (16%)
Query: 220 KKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279
K+ I E +E + + D Y ++G RG LLYGPPGTGK+ L+ A++N +
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV--- 237
Query: 280 AVHSNSELRRVLLSTGNR--------------SILVVEDIDCSLELEDRQAQPTTVNVLK 325
+ SE L G R SI+ ++++D S+ + AQ +
Sbjct: 238 ---NGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD-SIATKRFDAQTGSD---- 289
Query: 326 PLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
R +Q L LL +DG S + ++ TN D LDPA+LRPGR+D I
Sbjct: 290 --REVQRILIELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKI 338
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes assembly protein AFG3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=AFG3 PE=1 SV=1
Length = 761
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 34/212 (16%)
Query: 183 LYSLNQDHARRFGLDSWHWITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGK 242
++++ + A+ F ++ I+F + A D E K+ I+E F+K Y ++G
Sbjct: 266 MFNVGKSRAKLFNKETDIKISFKNVAGCD------EAKQEIME-FVHFLKNPGKYTKLGA 318
Query: 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNR----- 297
RG +L GPPGTGK+ L A + N + S SE + + G
Sbjct: 319 KIPRGAILSGPPGTGKTLLAKATAGEANVPFLSV------SGSEFVEMFVGVGASRVRDL 372
Query: 298 ---------SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSC 348
SI+ +++ID + + N + + TL+ LL +DG +S
Sbjct: 373 FTQARSMAPSIIFIDEIDAIGKERGKGGALGGANDER-----EATLNQLLVEMDGFTTS- 426
Query: 349 GDERIIVFTTNHKDRLDPAVLRPGRMDVHIYM 380
D+ +++ TN D LD A++RPGR D HI +
Sbjct: 427 -DQVVVLAGTNRPDVLDNALMRPGRFDRHIQI 457
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2
SV=1
Length = 414
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 32/187 (17%)
Query: 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN 267
AT++ + E K I E +E +K + + +G A +G ++YGPPGTGK+ L A+++
Sbjct: 153 ATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAH 212
Query: 268 YLNFDIYDLELSAVHSNSELRRVLLSTGNR--------------SILVVEDIDC--SLEL 311
+ + + S SEL + + G++ SI+ +++ID S
Sbjct: 213 HTDCTFIRV------SGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRT 266
Query: 312 EDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRP 371
E + + +Q T+ LLN LDG S+ + I+ TN D LDPA+LRP
Sbjct: 267 EGGKGGGDS--------EVQRTMLELLNQLDGFESTQNIK--IIMATNRIDILDPALLRP 316
Query: 372 GRMDVHI 378
GR+D I
Sbjct: 317 GRIDRKI 323
>sp|Q8EUA6|FTSH_MYCPE ATP-dependent zinc metalloprotease FtsH OS=Mycoplasma penetrans
(strain HF-2) GN=ftsH PE=3 SV=1
Length = 822
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 230 FVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA-----VHSN 284
++KR D Y +G +G +LYGPPGTGK+ L A++ + + SA V
Sbjct: 325 YLKRPDRYAAMGARVPKGVILYGPPGTGKTLLAKAVAGEAKVPFFQVSGSAFEDMLVGVG 384
Query: 285 SELRRVLLSTGNRS---ILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341
++ R L + +S I+ +++ID R TT L TL+ LL +
Sbjct: 385 AKRVRDLFNKAVKSAPAIIFIDEIDSV--GSKRGKFETTAGSL-----ADQTLNQLLAEM 437
Query: 342 DGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
DG + G I++ TN D LD A+LRPGR D HI
Sbjct: 438 DGFNTKTG--VIVMAATNRLDVLDDALLRPGRFDRHI 472
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 20/177 (11%)
Query: 235 DYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN--SELRRVLL 292
+ + RVG +G LLYGPPGTGK+ L A+++ L + + SA+ E RV+
Sbjct: 161 ELFIRVGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIR 220
Query: 293 STGNRS------ILVVEDIDCSLELEDRQ-AQPTTVNVLKPLRPMQVTLSGLLNFLDGLW 345
+ ++ +++ID + R+ ++ T+ + R +Q TL LLN +DG +
Sbjct: 221 EMFGYARDHQPCVIFMDEIDA---IGGRRFSEGTSAD-----REIQRTLMELLNQMDG-F 271
Query: 346 SSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCG-FDTLAANYLGITDH 401
+ +II+ TN D LDPA+LRPGR+D I + G D L + IT H
Sbjct: 272 DTLSKVKIIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKH 327
>sp|D1C1U7|FTSH1_SPHTD ATP-dependent zinc metalloprotease FtsH 1 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH1 PE=3
SV=1
Length = 653
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 19/208 (9%)
Query: 189 DHARRFGLDSWHWITFNHPA-TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRG 247
+ A FG T N P TF +A E K+ ++E +E F+K D + +G RG
Sbjct: 140 NQAISFGKSRARMFTGNKPTVTFADVAGVEEAKEELVEVVE-FLKYPDKFASLGARIPRG 198
Query: 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA-----VHSNSELRRVLLSTGNRS---I 299
LL GPPGTGK+ L A++ + + S V + R L R+ I
Sbjct: 199 VLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCI 258
Query: 300 LVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTN 359
+ +++ID + + + TL+ +L +DG S+ I++ TN
Sbjct: 259 VFIDEIDAV-------GRQRGAGLGGSHDEREQTLNQILVEMDGFDSTT--NVIVIAATN 309
Query: 360 HKDRLDPAVLRPGRMDVHIYMSYCTPCG 387
D LDPA+LRPGR D + + G
Sbjct: 310 RPDVLDPALLRPGRFDRQVVLDRPDIAG 337
>sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A OS=Arabidopsis
thaliana GN=RPT4A PE=2 SV=1
Length = 399
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 20/187 (10%)
Query: 225 EDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA---- 280
E +E + + + RVG +G LLYGPPGTGK+ L A+++ ++ + + SA
Sbjct: 153 ESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK 212
Query: 281 -VHSNSELRRVLLSTGNR---SILVVEDIDCSLELEDRQ-AQPTTVNVLKPLRPMQVTLS 335
+ ++ L R + + I+ +++ID + R+ ++ T+ + R +Q TL
Sbjct: 213 YIGESARLIREMFNYAREHQPCIIFMDEIDA---IGGRRFSEGTSAD-----REIQRTLM 264
Query: 336 GLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTP-CGFDTLAAN 394
LLN LDG + + G ++I+ TN D LDPA+LRPGR+D I + D L +
Sbjct: 265 ELLNQLDG-FDNLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIH 322
Query: 395 YLGITDH 401
GI H
Sbjct: 323 AAGIAKH 329
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 225 EDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA---- 280
E +E +K + + RVG +G LLYGPPGTGK+ L A++ L + + SA
Sbjct: 146 EVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDK 205
Query: 281 -VHSNSELRRVLLSTGNR---SILVVEDIDCSLELEDRQ-AQPTTVNVLKPLRPMQVTLS 335
+ ++ + R + ++ +++ID + R+ ++ T+ + R +Q TL
Sbjct: 206 YIGESARIIREMFGYAKEHEPCVIFMDEIDA---IGGRRFSEGTSAD-----REIQRTLM 257
Query: 336 GLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCG 387
LLN +DG + G +II+ TN D LDPA+LRPGR+D I + G
Sbjct: 258 ELLNQMDG-FDYLGQTKIIM-ATNRPDTLDPALLRPGRLDRKIEIPLPNEVG 307
>sp|B8J992|FTSH_ANAD2 ATP-dependent zinc metalloprotease FtsH OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=ftsH PE=3
SV=1
Length = 706
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 24/225 (10%)
Query: 163 YFPYILRKSKSAQEENKTLKLYSLNQDHARRFGLDSWHWITFNHPATFDTLAMEAELKKM 222
++ +++R+ S Q + + + AR ++ +TF A D E
Sbjct: 166 FWAWVMRR-MSGQLGQGPPGVMAFGKSRAR-IHMEPDTGVTFQDAAGIDEAVEE------ 217
Query: 223 IIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282
++++ F+K + YRR+G +G LL GPPGTGK+ L A + + L
Sbjct: 218 -LQEIVEFLKTPEKYRRLGGRIPKGVLLVGPPGTGKTLLARATAGEAGVPFFSL------ 270
Query: 283 SNSELRRVLLSTGNRSIL-----VVEDIDCSLELEDRQAQPTTVN--VLKPLRPMQVTLS 335
S SE + + G + + C + +++ A + N ++ + TL+
Sbjct: 271 SGSEFVEMFVGVGAARVRDLFAQATQKAPCIVFIDELDALGKSRNAGIMGGHDEREQTLN 330
Query: 336 GLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYM 380
LL +DG + G II+ TN + LDPA+LRPGR D + +
Sbjct: 331 QLLAEMDGFDARAG--LIIMGATNRPEILDPALLRPGRFDRQVLV 373
>sp|B9KXV3|FTSH1_THERP ATP-dependent zinc metalloprotease FtsH 1 OS=Thermomicrobium roseum
(strain ATCC 27502 / DSM 5159 / P-2) GN=ftsH1 PE=3 SV=1
Length = 652
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 19/201 (9%)
Query: 189 DHARRFGLDSWHWITFNHPA-TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRG 247
+ A FG T N P TFD +A E K+ + E +E F+K + + +G RG
Sbjct: 140 NQALSFGKSRARVFTSNRPTVTFDDVAGVDEAKEELQEIVE-FLKYPEKFAALGARIPRG 198
Query: 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA-----VHSNSELRRVLLSTGNRS---I 299
LL GPPGTGK+ L A++ + + S V + R L R+ I
Sbjct: 199 VLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCI 258
Query: 300 LVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTN 359
+ +++ID RQ + + TL+ +L +DG SS I++ TN
Sbjct: 259 VFIDEIDAV----GRQ---RGAGLGGSHDEREQTLNQILVEMDGFDSST--NVIVIAATN 309
Query: 360 HKDRLDPAVLRPGRMDVHIYM 380
D LDPA+LRPGR D + +
Sbjct: 310 RPDVLDPALLRPGRFDRQVVL 330
>sp|P34124|PRS8_DICDI 26S protease regulatory subunit 8 OS=Dictyostelium discoideum
GN=psmC5 PE=1 SV=2
Length = 403
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 28/185 (15%)
Query: 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN 267
+T+D + + K I E +E +K + + +G A +G LLYGPPGTGK+ L A+++
Sbjct: 142 STYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 201
Query: 268 YLNFDIYDLELSAVHSNSELRRVLLSTGNR--------------SILVVEDIDCSLELED 313
+ + + S SEL + + G+R SI+ +++ID
Sbjct: 202 HTDCTFIRV------SGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRG 255
Query: 314 RQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGR 373
+ +Q T+ LLN LDG S+ + ++ TN D LDPA+LRPGR
Sbjct: 256 ESGSGGGDS------EVQRTMLELLNQLDGFESTKNIK--VLMCTNRIDILDPALLRPGR 307
Query: 374 MDVHI 378
+D I
Sbjct: 308 IDRKI 312
>sp|Q655S1|FTSH2_ORYSJ ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=FTSH2 PE=3 SV=1
Length = 676
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 30/188 (15%)
Query: 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAA 264
N TFD +A E K+ +E +E F+K+ + + VG +G LL GPPGTGK+ L A
Sbjct: 208 NTGVTFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKA 266
Query: 265 MSNYLNFDIYDLELSAVHSNSELRRVLLSTGNR--------------SILVVEDIDCSLE 310
++ + + S SE + + G I+ V++ID
Sbjct: 267 IAGEAGVPFFSI------SGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-- 318
Query: 311 LEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLR 370
RQ + T + R + TL+ LL +DG + G I++ TN D LD A+LR
Sbjct: 319 --GRQ-RGTGIGGGNDER--EQTLNQLLTEMDGFEGNTG--IIVIAATNRADILDSALLR 371
Query: 371 PGRMDVHI 378
PGR D +
Sbjct: 372 PGRFDRQV 379
>sp|C3NFW6|PAN_SULIN Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1
Length = 393
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 214 AMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSL---IAAMSNYLN 270
+E ++K++ E +E +K+ + +R +G +G LLYGPPGTGK+ L +A SN +
Sbjct: 138 GLEEQIKELR-EVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVF 196
Query: 271 FDIYDLELSA--VHSNSELRRVLLSTGNR---SILVVEDIDCSLELEDRQAQPTTVNVLK 325
+ E + V + + R L R SI+ +++ID + ++ T
Sbjct: 197 IHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDA---IGAKRIDIGTSGE-- 251
Query: 326 PLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMD 375
R +Q TL LL LDG + D I+ TN D LDPA+LRPGR D
Sbjct: 252 --REIQRTLMQLLAELDGF--NPLDNVKIIAATNRIDILDPALLRPGRFD 297
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 17/164 (10%)
Query: 223 IIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN-----YLNFDIYDLE 277
I E +E + +YY +G +G +LYGPPGTGK+ L A++N +L +L
Sbjct: 197 IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI 256
Query: 278 LSAVHSNSELRRVLLSTGNR---SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTL 334
+ +L R L SI+ +++ID + ++ + R +Q T+
Sbjct: 257 QKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDA---IGTKRYDSNSGGE----REIQRTM 309
Query: 335 SGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378
LLN LDG + S GD ++I+ TN + LDPA++RPGR+D I
Sbjct: 310 LELLNQLDG-FDSRGDVKVIM-ATNRIETLDPALIRPGRIDRKI 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,426,679
Number of Sequences: 539616
Number of extensions: 6723406
Number of successful extensions: 26713
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 25102
Number of HSP's gapped (non-prelim): 1411
length of query: 455
length of database: 191,569,459
effective HSP length: 121
effective length of query: 334
effective length of database: 126,275,923
effective search space: 42176158282
effective search space used: 42176158282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)