Query 012846
Match_columns 455
No_of_seqs 422 out of 2898
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 9E-101 2E-105 765.6 39.5 435 6-450 2-439 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 2.9E-42 6.4E-47 335.0 18.6 234 205-447 145-394 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 1.6E-37 3.4E-42 321.6 17.1 209 206-426 429-646 (693)
4 KOG0734 AAA+-type ATPase conta 100.0 2.8E-37 6E-42 311.3 15.4 206 207-425 300-514 (752)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 6.8E-36 1.5E-40 305.5 19.3 209 206-426 506-727 (802)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 8.7E-35 1.9E-39 297.4 17.6 220 208-440 187-417 (802)
7 KOG0736 Peroxisome assembly fa 100.0 9.5E-35 2.1E-39 303.6 18.0 229 206-445 667-906 (953)
8 KOG0731 AAA+-type ATPase conta 100.0 3.1E-34 6.8E-39 305.1 20.3 213 205-426 305-527 (774)
9 KOG0726 26S proteasome regulat 100.0 8.6E-35 1.9E-39 275.1 9.4 216 203-427 177-401 (440)
10 KOG0727 26S proteasome regulat 100.0 1.3E-33 2.8E-38 262.6 14.5 211 208-427 152-371 (408)
11 KOG0728 26S proteasome regulat 100.0 1.9E-33 4E-38 261.3 13.6 214 204-426 140-362 (404)
12 PTZ00454 26S protease regulato 100.0 2.1E-32 4.5E-37 280.2 21.0 232 205-445 139-386 (398)
13 KOG0738 AAA+-type ATPase [Post 100.0 8.7E-33 1.9E-37 270.5 15.1 209 206-426 207-426 (491)
14 KOG0652 26S proteasome regulat 100.0 4.3E-32 9.4E-37 253.5 14.3 230 206-444 166-411 (424)
15 COG0465 HflB ATP-dependent Zn 100.0 5.8E-32 1.3E-36 283.5 16.0 232 206-447 145-399 (596)
16 PRK03992 proteasome-activating 100.0 5.2E-31 1.1E-35 270.6 21.0 235 205-448 125-375 (389)
17 TIGR03689 pup_AAA proteasome A 100.0 8E-31 1.7E-35 273.8 19.1 183 205-398 176-380 (512)
18 PTZ00361 26 proteosome regulat 100.0 8.6E-31 1.9E-35 270.1 18.5 233 204-445 176-424 (438)
19 KOG0729 26S proteasome regulat 100.0 3.6E-31 7.9E-36 247.9 14.2 215 202-427 168-393 (435)
20 KOG0735 AAA+-type ATPase [Post 100.0 9.7E-31 2.1E-35 271.4 18.5 218 198-427 652-880 (952)
21 TIGR01241 FtsH_fam ATP-depende 100.0 1.5E-30 3.3E-35 275.5 20.1 231 205-445 49-295 (495)
22 CHL00195 ycf46 Ycf46; Provisio 100.0 1.4E-30 3.1E-35 272.1 19.0 204 207-426 224-438 (489)
23 TIGR01243 CDC48 AAA family ATP 100.0 3.5E-30 7.7E-35 284.5 22.1 209 207-426 449-666 (733)
24 COG1223 Predicted ATPase (AAA+ 100.0 1.6E-30 3.6E-35 242.8 14.6 205 206-427 116-329 (368)
25 COG0464 SpoVK ATPases of the A 100.0 6.1E-29 1.3E-33 263.5 20.5 227 206-444 237-482 (494)
26 CHL00176 ftsH cell division pr 100.0 5.3E-29 1.1E-33 267.9 20.1 212 205-426 177-397 (638)
27 KOG0739 AAA+-type ATPase [Post 100.0 6.9E-30 1.5E-34 242.6 10.5 201 208-422 130-340 (439)
28 KOG0651 26S proteasome regulat 100.0 5.2E-29 1.1E-33 238.0 12.7 209 208-427 129-348 (388)
29 PLN00020 ribulose bisphosphate 100.0 4.2E-28 9.1E-33 239.9 17.9 195 207-414 111-328 (413)
30 TIGR01242 26Sp45 26S proteasom 100.0 5.8E-28 1.2E-32 246.5 19.4 213 205-426 116-337 (364)
31 KOG0737 AAA+-type ATPase [Post 100.0 1.6E-28 3.4E-33 240.5 14.4 221 208-445 89-319 (386)
32 PF14363 AAA_assoc: Domain ass 100.0 2.8E-28 6.1E-33 201.8 11.8 97 28-124 1-98 (98)
33 PRK10733 hflB ATP-dependent me 99.9 3.9E-27 8.5E-32 255.7 19.4 210 207-426 148-366 (644)
34 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.2E-27 4.8E-32 268.4 17.1 177 233-425 1618-1850(2281)
35 TIGR01243 CDC48 AAA family ATP 99.9 1.9E-25 4.2E-30 246.8 20.0 208 206-425 173-389 (733)
36 KOG0732 AAA+-type ATPase conta 99.9 3.2E-25 6.9E-30 242.1 16.2 210 205-426 259-483 (1080)
37 KOG0740 AAA+-type ATPase [Post 99.9 3.4E-25 7.3E-30 224.2 13.1 209 206-427 148-366 (428)
38 KOG0730 AAA+-type ATPase [Post 99.9 7.3E-25 1.6E-29 227.7 15.4 206 206-426 180-395 (693)
39 KOG0741 AAA+-type ATPase [Post 99.9 1.8E-24 3.9E-29 218.8 11.3 184 233-426 244-449 (744)
40 KOG0742 AAA+-type ATPase [Post 99.9 2.2E-22 4.8E-27 198.5 11.3 227 151-398 296-530 (630)
41 PF00004 AAA: ATPase family as 99.8 1.6E-20 3.6E-25 162.6 9.7 123 248-382 1-132 (132)
42 PF05496 RuvB_N: Holliday junc 99.8 7.2E-19 1.6E-23 164.2 18.8 196 204-430 17-227 (233)
43 KOG0744 AAA+-type ATPase [Post 99.8 5.7E-19 1.2E-23 170.2 9.0 178 210-397 141-341 (423)
44 PRK00080 ruvB Holliday junctio 99.8 1.6E-17 3.6E-22 167.3 18.0 191 205-426 19-224 (328)
45 TIGR02881 spore_V_K stage V sp 99.7 3.2E-17 7E-22 159.9 16.1 176 210-406 5-201 (261)
46 CHL00181 cbbX CbbX; Provisiona 99.7 1.8E-17 4E-22 163.5 14.1 174 211-404 23-217 (287)
47 TIGR00635 ruvB Holliday juncti 99.7 4.2E-17 9.1E-22 162.5 16.8 184 209-423 2-200 (305)
48 TIGR02880 cbbX_cfxQ probable R 99.7 3E-17 6.6E-22 161.9 14.2 175 210-404 20-216 (284)
49 COG0466 Lon ATP-dependent Lon 99.7 9.6E-17 2.1E-21 169.0 18.4 158 212-396 324-508 (782)
50 TIGR00763 lon ATP-dependent pr 99.7 1.4E-16 3.1E-21 177.1 19.6 158 212-396 321-505 (775)
51 PF05673 DUF815: Protein of un 99.7 3.2E-16 6.9E-21 148.4 18.5 180 196-404 12-215 (249)
52 KOG2004 Mitochondrial ATP-depe 99.7 2.1E-16 4.6E-21 165.6 18.9 197 212-445 412-641 (906)
53 COG2255 RuvB Holliday junction 99.7 4.2E-16 9E-21 148.6 15.9 192 205-427 20-226 (332)
54 PRK04195 replication factor C 99.7 2.5E-16 5.5E-21 166.5 16.2 167 202-403 5-180 (482)
55 PRK07003 DNA polymerase III su 99.7 9.9E-16 2.2E-20 164.4 17.9 159 204-402 9-197 (830)
56 PRK12323 DNA polymerase III su 99.7 3.9E-16 8.4E-21 165.5 14.5 181 204-424 9-225 (700)
57 PHA02544 44 clamp loader, smal 99.7 5.3E-15 1.2E-19 148.1 20.4 155 201-395 11-172 (316)
58 PRK14956 DNA polymerase III su 99.7 1.9E-15 4.2E-20 156.6 17.0 159 203-401 10-198 (484)
59 PRK14962 DNA polymerase III su 99.7 2.6E-15 5.6E-20 157.4 17.7 156 204-399 7-192 (472)
60 COG2256 MGS1 ATPase related to 99.6 1.9E-15 4.1E-20 150.4 14.5 153 205-398 18-178 (436)
61 PRK14960 DNA polymerase III su 99.6 4E-15 8.6E-20 158.3 16.8 159 204-402 8-196 (702)
62 PRK14961 DNA polymerase III su 99.6 8.4E-15 1.8E-19 149.5 18.2 160 204-403 9-198 (363)
63 PLN03025 replication factor C 99.6 8.9E-15 1.9E-19 146.9 16.6 159 202-401 4-176 (319)
64 PRK14958 DNA polymerase III su 99.6 7.8E-15 1.7E-19 155.3 16.0 159 203-401 8-196 (509)
65 PRK14964 DNA polymerase III su 99.6 1.3E-14 2.9E-19 151.8 16.7 159 204-402 6-194 (491)
66 PRK06645 DNA polymerase III su 99.6 1.8E-14 3.8E-19 151.8 17.7 159 203-401 13-205 (507)
67 TIGR02397 dnaX_nterm DNA polym 99.6 3.2E-14 6.8E-19 144.6 18.7 162 203-404 6-197 (355)
68 PRK07994 DNA polymerase III su 99.6 1.8E-14 4E-19 154.9 17.5 157 204-400 9-195 (647)
69 PRK14949 DNA polymerase III su 99.6 2.2E-14 4.7E-19 156.8 17.8 158 204-401 9-196 (944)
70 TIGR02639 ClpA ATP-dependent C 99.6 9.4E-15 2E-19 161.7 15.2 158 206-397 177-359 (731)
71 PRK08691 DNA polymerase III su 99.6 1.7E-14 3.8E-19 154.6 15.9 160 204-403 9-198 (709)
72 PRK14951 DNA polymerase III su 99.6 2.5E-14 5.4E-19 153.5 16.8 160 204-403 9-203 (618)
73 PRK05563 DNA polymerase III su 99.6 4.2E-14 9.1E-19 151.6 18.2 159 204-402 9-197 (559)
74 PRK07940 DNA polymerase III su 99.6 8E-14 1.7E-18 143.0 19.3 179 208-421 2-210 (394)
75 PRK13342 recombination factor 99.6 3.8E-14 8.2E-19 147.2 17.1 151 204-398 5-166 (413)
76 PRK14963 DNA polymerase III su 99.6 5.9E-14 1.3E-18 148.3 18.7 158 204-401 7-193 (504)
77 PRK14969 DNA polymerase III su 99.6 2.8E-14 6.1E-19 151.9 15.5 157 204-400 9-195 (527)
78 PRK07133 DNA polymerase III su 99.6 5E-14 1.1E-18 152.4 17.4 157 203-399 10-193 (725)
79 PRK07764 DNA polymerase III su 99.6 5E-14 1.1E-18 155.9 17.5 159 203-401 7-197 (824)
80 PRK14957 DNA polymerase III su 99.6 6.9E-14 1.5E-18 148.3 17.6 157 204-400 9-195 (546)
81 PRK10787 DNA-binding ATP-depen 99.6 9.1E-14 2E-18 153.8 18.9 158 212-397 323-507 (784)
82 PRK05896 DNA polymerase III su 99.6 5.8E-14 1.3E-18 149.2 16.4 157 203-399 8-194 (605)
83 PRK14970 DNA polymerase III su 99.6 1.6E-13 3.5E-18 140.4 18.6 159 203-401 9-185 (367)
84 PRK14952 DNA polymerase III su 99.6 9E-14 2E-18 148.7 17.2 160 204-403 6-197 (584)
85 TIGR02902 spore_lonB ATP-depen 99.6 6.7E-14 1.5E-18 149.3 16.0 172 204-412 58-292 (531)
86 KOG0989 Replication factor C, 99.5 1.5E-14 3.3E-19 139.3 9.8 162 202-404 27-209 (346)
87 PRK06893 DNA replication initi 99.5 1E-13 2.2E-18 132.8 15.3 167 203-403 8-181 (229)
88 PRK06305 DNA polymerase III su 99.5 2.6E-13 5.6E-18 142.0 19.7 156 204-399 10-196 (451)
89 PRK12402 replication factor C 99.5 2.4E-13 5.2E-18 137.0 18.7 160 202-402 6-203 (337)
90 PRK14965 DNA polymerase III su 99.5 9.5E-14 2.1E-18 149.4 16.0 157 204-400 9-195 (576)
91 PRK14959 DNA polymerase III su 99.5 1.3E-13 2.7E-18 147.3 16.5 158 203-400 8-195 (624)
92 PRK09111 DNA polymerase III su 99.5 3.6E-13 7.9E-18 144.7 18.9 161 203-403 16-211 (598)
93 COG2607 Predicted ATPase (AAA+ 99.5 9.4E-13 2E-17 123.0 18.9 210 197-444 46-279 (287)
94 PRK05342 clpX ATP-dependent pr 99.5 1.4E-13 3.1E-18 141.9 14.9 220 210-442 69-371 (412)
95 TIGR02640 gas_vesic_GvpN gas v 99.5 1.9E-13 4.1E-18 133.5 15.1 145 219-398 6-200 (262)
96 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.4E-13 3E-18 130.9 13.1 183 204-423 8-200 (226)
97 PRK14953 DNA polymerase III su 99.5 3.8E-13 8.3E-18 141.7 17.4 159 204-402 9-197 (486)
98 PRK11034 clpA ATP-dependent Cl 99.5 1.7E-13 3.7E-18 150.7 15.2 197 212-443 459-709 (758)
99 PRK14948 DNA polymerase III su 99.5 7.2E-13 1.6E-17 143.3 19.5 157 203-399 8-196 (620)
100 PRK14955 DNA polymerase III su 99.5 2.4E-13 5.1E-18 140.5 14.8 156 204-399 9-202 (397)
101 PRK08451 DNA polymerase III su 99.5 6.7E-13 1.5E-17 140.2 18.4 159 204-402 7-195 (535)
102 TIGR00382 clpX endopeptidase C 99.5 5.5E-13 1.2E-17 137.0 17.2 220 212-444 78-379 (413)
103 KOG0736 Peroxisome assembly fa 99.5 4.5E-13 9.8E-18 141.9 16.5 171 242-426 428-607 (953)
104 PRK06647 DNA polymerase III su 99.5 5.5E-13 1.2E-17 142.6 17.4 157 204-400 9-195 (563)
105 KOG0735 AAA+-type ATPase [Post 99.5 2.6E-13 5.6E-18 142.5 14.1 170 211-399 408-589 (952)
106 TIGR03345 VI_ClpV1 type VI sec 99.5 5.3E-13 1.1E-17 149.3 17.3 157 206-397 182-364 (852)
107 PRK10865 protein disaggregatio 99.5 1.5E-13 3.2E-18 154.0 12.5 158 206-398 173-356 (857)
108 PRK14954 DNA polymerase III su 99.5 9.1E-13 2E-17 141.9 18.0 156 204-399 9-202 (620)
109 PRK14950 DNA polymerase III su 99.5 8.8E-13 1.9E-17 142.5 17.5 158 203-400 8-196 (585)
110 PRK11034 clpA ATP-dependent Cl 99.5 1.8E-13 3.8E-18 150.6 11.2 155 209-397 184-363 (758)
111 PRK14971 DNA polymerase III su 99.5 1.4E-12 3.1E-17 140.9 17.9 161 203-403 9-200 (614)
112 TIGR02928 orc1/cdc6 family rep 99.5 2.3E-12 5.1E-17 131.4 18.6 158 210-397 14-213 (365)
113 PRK08903 DnaA regulatory inact 99.5 1.2E-12 2.6E-17 125.0 15.3 163 203-406 10-180 (227)
114 PRK00440 rfc replication facto 99.5 2.5E-12 5.4E-17 128.5 18.0 161 201-402 7-180 (319)
115 TIGR00362 DnaA chromosomal rep 99.5 8E-13 1.7E-17 137.0 14.8 189 204-424 103-310 (405)
116 PRK13341 recombination factor 99.5 5.3E-13 1.1E-17 146.2 13.5 153 204-397 21-182 (725)
117 PRK00149 dnaA chromosomal repl 99.4 9E-13 2E-17 138.4 14.2 192 203-425 114-323 (450)
118 TIGR02639 ClpA ATP-dependent C 99.4 1.6E-12 3.5E-17 144.0 16.1 197 212-444 455-706 (731)
119 PRK08727 hypothetical protein; 99.4 1.5E-12 3.2E-17 125.1 13.4 157 203-397 11-176 (233)
120 TIGR03346 chaperone_ClpB ATP-d 99.4 1E-12 2.3E-17 147.6 13.9 158 206-398 168-351 (852)
121 CHL00095 clpC Clp protease ATP 99.4 3.6E-12 7.7E-17 142.9 16.3 152 208-395 176-353 (821)
122 PRK08084 DNA replication initi 99.4 4.4E-12 9.5E-17 121.9 14.7 158 204-396 15-180 (235)
123 PRK07471 DNA polymerase III su 99.4 3.6E-11 7.7E-16 122.5 21.6 152 205-396 13-213 (365)
124 COG2812 DnaX DNA polymerase II 99.4 3.5E-12 7.7E-17 133.4 13.3 160 205-404 10-199 (515)
125 TIGR01650 PD_CobS cobaltochela 99.4 2.1E-12 4.6E-17 128.1 11.1 132 245-396 64-233 (327)
126 PRK00411 cdc6 cell division co 99.4 2.6E-11 5.6E-16 125.1 19.6 158 209-397 28-221 (394)
127 PRK09112 DNA polymerase III su 99.4 5.9E-11 1.3E-15 120.3 21.5 180 205-425 17-241 (351)
128 TIGR02903 spore_lon_C ATP-depe 99.4 1.4E-11 3E-16 133.7 17.9 172 205-413 148-383 (615)
129 PRK05642 DNA replication initi 99.4 1.4E-11 3E-16 118.4 15.9 160 203-396 11-179 (234)
130 PRK05564 DNA polymerase III su 99.4 5.6E-11 1.2E-15 119.1 20.9 171 209-422 2-188 (313)
131 PTZ00112 origin recognition co 99.4 1.6E-11 3.5E-16 133.0 17.9 193 211-444 755-988 (1164)
132 PRK14088 dnaA chromosomal repl 99.4 4.4E-12 9.6E-17 132.5 13.2 190 204-425 98-306 (440)
133 PRK13407 bchI magnesium chelat 99.4 1.2E-11 2.5E-16 124.3 15.0 156 206-397 3-217 (334)
134 cd00009 AAA The AAA+ (ATPases 99.3 1.4E-11 3.1E-16 107.0 13.1 115 245-382 19-151 (151)
135 PRK12422 chromosomal replicati 99.3 1E-11 2.2E-16 129.7 14.1 140 246-409 142-297 (445)
136 KOG1969 DNA replication checkp 99.3 2E-11 4.4E-16 129.0 16.1 174 201-399 261-484 (877)
137 PF00308 Bac_DnaA: Bacterial d 99.3 1.3E-11 2.9E-16 117.3 13.6 142 246-410 35-193 (219)
138 PRK14086 dnaA chromosomal repl 99.3 1.1E-11 2.5E-16 132.0 14.0 191 203-425 280-489 (617)
139 PHA02244 ATPase-like protein 99.3 1.2E-11 2.6E-16 124.2 13.3 121 245-387 119-265 (383)
140 COG0542 clpA ATP-binding subun 99.3 1.2E-11 2.6E-16 134.1 14.1 200 211-445 491-750 (786)
141 PRK05201 hslU ATP-dependent pr 99.3 2E-11 4.3E-16 124.4 14.7 70 212-281 16-86 (443)
142 PRK10865 protein disaggregatio 99.3 3E-11 6.6E-16 135.6 17.6 203 210-444 567-823 (857)
143 TIGR00390 hslU ATP-dependent p 99.3 2.4E-11 5.2E-16 123.7 14.8 70 212-281 13-83 (441)
144 PF07728 AAA_5: AAA domain (dy 99.3 2.5E-12 5.4E-17 113.1 5.8 105 247-374 1-139 (139)
145 COG0464 SpoVK ATPases of the A 99.3 2.6E-11 5.7E-16 128.9 14.5 180 232-425 5-193 (494)
146 TIGR03345 VI_ClpV1 type VI sec 99.3 3.9E-11 8.5E-16 134.4 15.9 156 211-397 566-781 (852)
147 PRK06620 hypothetical protein; 99.3 2.2E-11 4.7E-16 115.4 11.7 149 204-398 9-162 (214)
148 TIGR03346 chaperone_ClpB ATP-d 99.3 6.7E-11 1.4E-15 133.2 17.1 201 211-444 565-820 (852)
149 COG0714 MoxR-like ATPases [Gen 99.3 4.3E-11 9.2E-16 120.8 13.9 130 245-397 43-204 (329)
150 CHL00081 chlI Mg-protoporyphyr 99.3 3E-11 6.4E-16 121.7 12.2 154 208-397 14-233 (350)
151 KOG2028 ATPase related to the 99.3 1.9E-11 4.2E-16 120.2 10.3 150 205-394 132-292 (554)
152 CHL00095 clpC Clp protease ATP 99.3 6.2E-11 1.3E-15 133.0 15.2 201 211-444 509-776 (821)
153 TIGR00678 holB DNA polymerase 99.2 1.5E-10 3.2E-15 107.3 14.4 124 244-395 13-167 (188)
154 PRK14087 dnaA chromosomal repl 99.2 7.9E-11 1.7E-15 123.3 13.7 187 207-425 111-320 (450)
155 PRK07399 DNA polymerase III su 99.2 4.4E-10 9.5E-15 112.4 17.0 174 209-425 2-222 (314)
156 COG1474 CDC6 Cdc6-related prot 99.2 6.8E-10 1.5E-14 113.1 18.0 153 212-397 18-204 (366)
157 PRK05707 DNA polymerase III su 99.2 7.8E-10 1.7E-14 111.3 18.1 125 244-396 21-178 (328)
158 TIGR02030 BchI-ChlI magnesium 99.2 2.1E-10 4.6E-15 115.4 13.4 153 209-397 2-220 (337)
159 PRK09087 hypothetical protein; 99.2 4.3E-10 9.3E-15 107.4 14.0 131 246-410 45-180 (226)
160 PRK08058 DNA polymerase III su 99.2 1.8E-09 3.9E-14 109.0 18.6 146 209-394 3-180 (329)
161 PRK11331 5-methylcytosine-spec 99.1 5.4E-10 1.2E-14 115.1 13.8 132 210-381 174-356 (459)
162 smart00763 AAA_PrkA PrkA AAA d 99.1 1.8E-09 3.8E-14 108.6 16.8 63 209-278 48-118 (361)
163 TIGR00602 rad24 checkpoint pro 99.1 6.4E-10 1.4E-14 120.0 14.3 203 202-442 75-328 (637)
164 PRK08116 hypothetical protein; 99.1 4E-10 8.8E-15 110.3 11.2 117 245-385 114-251 (268)
165 PF07724 AAA_2: AAA domain (Cd 99.1 1.2E-10 2.7E-15 106.3 6.4 107 246-362 4-131 (171)
166 COG0470 HolB ATPase involved i 99.1 5.8E-09 1.3E-13 104.3 18.2 140 212-390 2-175 (325)
167 PRK06964 DNA polymerase III su 99.1 1.1E-08 2.4E-13 103.2 19.1 125 243-395 19-203 (342)
168 PRK07952 DNA replication prote 99.0 8.4E-10 1.8E-14 106.3 10.1 98 204-308 65-174 (244)
169 PRK13531 regulatory ATPase Rav 99.0 1.5E-09 3.3E-14 112.8 12.1 128 245-395 39-193 (498)
170 PF07726 AAA_3: ATPase family 99.0 1.4E-10 3.1E-15 99.6 3.7 104 248-374 2-129 (131)
171 TIGR02442 Cob-chelat-sub cobal 99.0 6.1E-10 1.3E-14 121.5 9.3 153 209-397 2-215 (633)
172 smart00382 AAA ATPases associa 99.0 1.6E-09 3.6E-14 92.9 10.2 119 245-383 2-147 (148)
173 PF13177 DNA_pol3_delta2: DNA 99.0 6.3E-09 1.4E-13 94.3 14.2 113 243-383 17-161 (162)
174 PRK08181 transposase; Validate 99.0 1E-09 2.2E-14 107.3 9.6 65 245-309 106-180 (269)
175 PRK11608 pspF phage shock prot 99.0 3.1E-09 6.7E-14 107.1 13.4 153 209-396 4-194 (326)
176 KOG0991 Replication factor C, 99.0 1.5E-09 3.2E-14 101.3 9.7 188 201-442 17-219 (333)
177 smart00350 MCM minichromosome 99.0 2.7E-09 5.8E-14 113.8 12.3 127 247-397 238-401 (509)
178 PRK08939 primosomal protein Dn 99.0 2.1E-09 4.5E-14 107.2 10.0 96 208-308 124-229 (306)
179 PF00158 Sigma54_activat: Sigm 99.0 5.6E-09 1.2E-13 95.1 11.8 86 213-310 1-107 (168)
180 PF01078 Mg_chelatase: Magnesi 99.0 1.6E-09 3.5E-14 100.9 8.2 46 209-269 1-46 (206)
181 TIGR01817 nifA Nif-specific re 99.0 6.3E-09 1.4E-13 111.8 13.6 156 207-397 192-385 (534)
182 PRK12377 putative replication 99.0 4.4E-09 9.4E-14 101.6 11.0 94 208-308 71-175 (248)
183 PRK06090 DNA polymerase III su 98.9 7.5E-08 1.6E-12 96.2 19.1 123 244-394 24-178 (319)
184 PRK11388 DNA-binding transcrip 98.9 9.5E-09 2.1E-13 112.7 13.5 154 208-397 322-511 (638)
185 PRK06871 DNA polymerase III su 98.9 6.7E-08 1.4E-12 96.9 17.8 124 244-395 23-178 (325)
186 TIGR02974 phageshock_pspF psp 98.9 7.9E-09 1.7E-13 104.2 11.2 150 213-397 1-188 (329)
187 PRK15424 propionate catabolism 98.9 1.6E-08 3.4E-13 107.8 13.9 156 208-398 216-418 (538)
188 COG0593 DnaA ATPase involved i 98.9 2E-08 4.4E-13 102.6 13.8 177 203-411 79-272 (408)
189 COG1224 TIP49 DNA helicase TIP 98.9 9.3E-08 2E-12 94.5 17.4 65 210-282 38-104 (450)
190 PF06068 TIP49: TIP49 C-termin 98.9 4.1E-08 8.9E-13 98.2 15.2 65 210-282 23-89 (398)
191 KOG0741 AAA+-type ATPase [Post 98.9 1.5E-08 3.3E-13 104.1 12.4 136 245-394 538-684 (744)
192 TIGR02031 BchD-ChlD magnesium 98.9 9.3E-09 2E-13 111.2 11.5 128 246-396 17-174 (589)
193 PRK07993 DNA polymerase III su 98.9 6.8E-08 1.5E-12 97.5 17.0 123 244-394 23-178 (334)
194 COG1219 ClpX ATP-dependent pro 98.9 8.7E-09 1.9E-13 100.2 9.8 94 245-345 97-204 (408)
195 PRK04132 replication factor C 98.9 2.5E-08 5.4E-13 110.5 14.7 124 249-400 568-706 (846)
196 PRK08769 DNA polymerase III su 98.9 1.9E-07 4.2E-12 93.4 19.8 148 244-424 25-208 (319)
197 COG1221 PspF Transcriptional r 98.9 9E-09 1.9E-13 104.9 10.2 207 159-398 23-266 (403)
198 PF03215 Rad17: Rad17 cell cyc 98.9 4.8E-08 1E-12 103.7 15.5 67 202-276 10-76 (519)
199 PRK10820 DNA-binding transcrip 98.8 6.1E-08 1.3E-12 103.7 15.8 157 206-397 199-393 (520)
200 KOG0745 Putative ATP-dependent 98.8 9.4E-09 2E-13 103.5 8.7 131 245-384 226-387 (564)
201 PRK06526 transposase; Provisio 98.8 6.8E-09 1.5E-13 100.8 6.1 65 245-309 98-172 (254)
202 TIGR02329 propionate_PrpR prop 98.8 3.5E-08 7.5E-13 105.2 11.9 157 207-398 208-403 (526)
203 COG0542 clpA ATP-binding subun 98.8 4.2E-08 9.2E-13 106.9 12.6 152 209-394 168-344 (786)
204 PF14532 Sigma54_activ_2: Sigm 98.8 1.3E-08 2.7E-13 89.6 6.6 79 215-310 2-83 (138)
205 PF01695 IstB_IS21: IstB-like 98.8 6.3E-09 1.4E-13 95.8 4.4 94 245-361 47-150 (178)
206 PRK06835 DNA replication prote 98.7 4.2E-08 9.1E-13 98.7 10.1 94 246-361 184-289 (329)
207 PRK15429 formate hydrogenlyase 98.7 9.6E-08 2.1E-12 105.6 13.8 155 208-397 373-565 (686)
208 PRK08699 DNA polymerase III su 98.7 5.8E-08 1.3E-12 97.6 10.9 122 244-393 20-182 (325)
209 PF12775 AAA_7: P-loop contain 98.7 5.6E-08 1.2E-12 95.4 10.0 134 245-397 33-194 (272)
210 COG1484 DnaC DNA replication p 98.7 5.3E-08 1.1E-12 94.6 9.4 91 210-308 78-179 (254)
211 TIGR00368 Mg chelatase-related 98.7 8.8E-08 1.9E-12 101.4 11.1 142 208-387 189-395 (499)
212 PRK05022 anaerobic nitric oxid 98.7 1.1E-07 2.4E-12 101.5 11.8 154 209-397 185-376 (509)
213 PRK06921 hypothetical protein; 98.7 1.1E-07 2.4E-12 93.0 10.4 63 245-307 117-188 (266)
214 TIGR03015 pepcterm_ATPase puta 98.7 2.5E-07 5.4E-12 90.2 12.8 154 247-425 45-239 (269)
215 PF12774 AAA_6: Hydrolytic ATP 98.6 5.2E-07 1.1E-11 86.4 13.6 171 245-443 32-221 (231)
216 COG1220 HslU ATP-dependent pro 98.6 2E-06 4.3E-11 84.6 17.1 70 212-281 16-86 (444)
217 PRK09183 transposase/IS protei 98.6 8.1E-08 1.8E-12 93.7 7.5 64 245-308 102-176 (259)
218 COG3829 RocR Transcriptional r 98.6 1.3E-07 2.8E-12 98.4 9.2 158 204-397 238-435 (560)
219 PF13173 AAA_14: AAA domain 98.6 3.4E-07 7.3E-12 79.5 9.7 63 246-308 3-73 (128)
220 KOG1051 Chaperone HSP104 and r 98.6 2.1E-06 4.5E-11 95.1 17.5 122 212-360 563-710 (898)
221 TIGR02915 PEP_resp_reg putativ 98.6 1.3E-06 2.9E-11 91.6 15.5 153 210-397 138-328 (445)
222 PF01637 Arch_ATPase: Archaeal 98.6 1.4E-06 3E-11 82.2 14.3 157 245-423 20-233 (234)
223 PRK09862 putative ATP-dependen 98.5 1.9E-07 4.1E-12 98.6 8.7 140 209-386 189-391 (506)
224 PRK05818 DNA polymerase III su 98.5 3.2E-06 6.9E-11 81.7 15.9 113 243-383 5-147 (261)
225 KOG2035 Replication factor C, 98.5 9.2E-07 2E-11 84.9 11.9 164 203-407 5-210 (351)
226 PF00910 RNA_helicase: RNA hel 98.5 1.2E-07 2.7E-12 79.7 5.4 62 248-309 1-62 (107)
227 PRK10923 glnG nitrogen regulat 98.5 8.5E-07 1.8E-11 93.7 12.3 153 210-397 137-327 (469)
228 PRK05917 DNA polymerase III su 98.5 9.4E-06 2E-10 79.9 18.5 112 244-383 18-154 (290)
229 PRK07132 DNA polymerase III su 98.5 1.3E-05 2.7E-10 79.7 18.9 123 244-394 17-160 (299)
230 COG1239 ChlI Mg-chelatase subu 98.5 6.6E-07 1.4E-11 90.8 9.7 155 208-398 14-234 (423)
231 KOG1942 DNA helicase, TBP-inte 98.5 5.1E-06 1.1E-10 80.3 15.1 62 211-280 38-101 (456)
232 PHA02624 large T antigen; Prov 98.4 1.1E-06 2.3E-11 93.4 11.2 125 241-382 427-561 (647)
233 PRK07276 DNA polymerase III su 98.4 2E-05 4.3E-10 77.8 19.0 119 244-393 23-172 (290)
234 TIGR00764 lon_rel lon-related 98.4 7E-06 1.5E-10 89.3 17.2 50 208-272 15-64 (608)
235 PF05729 NACHT: NACHT domain 98.4 2.8E-06 6.1E-11 75.8 10.8 134 246-398 1-165 (166)
236 PRK11361 acetoacetate metaboli 98.4 3.7E-06 8E-11 88.5 12.8 89 210-310 142-251 (457)
237 TIGR01818 ntrC nitrogen regula 98.4 3E-06 6.5E-11 89.4 11.9 152 211-397 134-323 (463)
238 PTZ00111 DNA replication licen 98.4 1.6E-06 3.4E-11 96.2 10.0 127 247-396 494-657 (915)
239 KOG1514 Origin recognition com 98.4 1.7E-05 3.6E-10 84.8 17.2 131 246-399 423-592 (767)
240 PF05621 TniB: Bacterial TniB 98.4 6.3E-06 1.4E-10 81.0 13.1 186 214-426 37-263 (302)
241 PF13401 AAA_22: AAA domain; P 98.3 1.4E-06 3E-11 75.2 7.5 64 245-308 4-99 (131)
242 COG0606 Predicted ATPase with 98.3 7.9E-07 1.7E-11 91.5 6.8 48 207-269 175-222 (490)
243 KOG0990 Replication factor C, 98.3 1.5E-06 3.3E-11 85.0 8.1 159 200-399 30-206 (360)
244 KOG1968 Replication factor C, 98.3 2.2E-06 4.8E-11 95.4 10.4 174 203-402 312-508 (871)
245 PRK15115 response regulator Gl 98.3 3.5E-06 7.6E-11 88.4 11.2 128 245-397 157-323 (444)
246 KOG1970 Checkpoint RAD17-RFC c 98.3 1.9E-05 4.2E-10 82.2 15.8 73 197-277 70-142 (634)
247 KOG0478 DNA replication licens 98.3 3.3E-06 7.1E-11 89.6 9.6 159 212-395 430-625 (804)
248 COG2204 AtoC Response regulato 98.2 5.2E-05 1.1E-09 79.0 17.3 153 209-397 139-330 (464)
249 PF03969 AFG1_ATPase: AFG1-lik 98.2 1.5E-06 3.3E-11 88.5 5.9 99 242-364 59-172 (362)
250 KOG2227 Pre-initiation complex 98.2 5E-05 1.1E-09 78.0 16.3 160 210-400 149-342 (529)
251 PLN03210 Resistant to P. syrin 98.2 4.4E-05 9.6E-10 89.3 18.1 58 203-271 176-233 (1153)
252 PRK13406 bchD magnesium chelat 98.2 1.2E-05 2.5E-10 86.9 12.2 120 246-388 26-174 (584)
253 PF00931 NB-ARC: NB-ARC domain 98.2 1.7E-05 3.7E-10 77.9 12.3 146 245-421 19-199 (287)
254 COG5271 MDN1 AAA ATPase contai 98.1 1.6E-05 3.4E-10 90.8 11.5 128 245-399 1543-1706(4600)
255 PRK15455 PrkA family serine pr 98.1 7.4E-06 1.6E-10 86.8 7.5 66 206-278 71-137 (644)
256 PHA00729 NTP-binding motif con 98.1 5.9E-06 1.3E-10 78.4 5.9 62 246-307 18-93 (226)
257 KOG2170 ATPase of the AAA+ sup 98.1 1.7E-05 3.6E-10 77.2 8.7 93 212-310 83-192 (344)
258 PHA02774 E1; Provisional 98.0 3.7E-05 8E-10 81.6 11.9 58 241-305 430-488 (613)
259 PRK10365 transcriptional regul 98.0 2.2E-05 4.9E-10 82.1 10.4 86 213-310 141-247 (441)
260 cd01120 RecA-like_NTPases RecA 98.0 5.7E-05 1.2E-09 66.9 10.5 31 248-278 2-35 (165)
261 PF10443 RNA12: RNA12 protein; 97.9 0.00048 1E-08 70.8 16.7 78 362-441 197-298 (431)
262 COG3604 FhlA Transcriptional r 97.9 6.5E-05 1.4E-09 77.8 10.3 90 208-309 220-330 (550)
263 PF05707 Zot: Zonular occluden 97.9 2.4E-05 5.1E-10 72.9 6.4 114 248-383 3-146 (193)
264 PF13207 AAA_17: AAA domain; P 97.9 1E-05 2.3E-10 68.8 3.6 31 248-278 2-32 (121)
265 TIGR02237 recomb_radB DNA repa 97.9 7.3E-05 1.6E-09 70.2 9.2 40 241-280 8-50 (209)
266 COG5245 DYN1 Dynein, heavy cha 97.8 6.3E-05 1.4E-09 85.6 9.7 140 243-398 1492-1660(3164)
267 KOG2680 DNA helicase TIP49, TB 97.8 0.00014 3E-09 70.9 10.5 58 352-412 318-387 (454)
268 TIGR02688 conserved hypothetic 97.8 0.00016 3.4E-09 74.5 11.4 64 245-309 209-273 (449)
269 PF06309 Torsin: Torsin; Inte 97.8 4.4E-05 9.5E-10 65.7 5.9 53 211-269 25-77 (127)
270 KOG0480 DNA replication licens 97.8 0.00023 5.1E-09 75.4 12.2 163 210-398 344-544 (764)
271 PF00493 MCM: MCM2/3/5 family 97.8 1.3E-05 2.9E-10 81.0 2.9 164 212-399 25-224 (331)
272 TIGR01618 phage_P_loop phage n 97.8 3.2E-05 6.9E-10 73.4 5.3 64 245-310 12-95 (220)
273 PRK07261 topology modulation p 97.8 6E-05 1.3E-09 68.9 6.8 31 248-278 3-33 (171)
274 PRK00131 aroK shikimate kinase 97.8 2.8E-05 6E-10 70.3 4.5 34 244-277 3-36 (175)
275 PF14516 AAA_35: AAA-like doma 97.7 0.0009 1.9E-08 67.7 15.7 133 245-396 31-214 (331)
276 PRK14722 flhF flagellar biosyn 97.7 8.9E-05 1.9E-09 75.7 8.2 103 245-368 137-266 (374)
277 PRK08118 topology modulation p 97.7 7E-05 1.5E-09 68.1 6.1 32 247-278 3-34 (167)
278 COG3283 TyrR Transcriptional r 97.7 0.00024 5.1E-09 70.8 9.8 132 198-361 191-344 (511)
279 cd01394 radB RadB. The archaea 97.7 0.00024 5.2E-09 67.2 9.7 38 241-278 15-55 (218)
280 PRK05800 cobU adenosylcobinami 97.6 0.00021 4.5E-09 65.3 7.9 64 247-310 3-90 (170)
281 PRK09361 radB DNA repair and r 97.6 0.00023 5E-09 67.7 8.6 39 241-279 19-60 (225)
282 PRK12723 flagellar biosynthesi 97.6 0.00088 1.9E-08 69.0 13.2 65 244-308 173-266 (388)
283 COG1373 Predicted ATPase (AAA+ 97.6 0.00088 1.9E-08 69.4 12.7 125 247-399 39-183 (398)
284 PF05272 VirE: Virulence-assoc 97.5 0.00044 9.5E-09 64.7 9.4 113 241-382 48-169 (198)
285 cd01124 KaiC KaiC is a circadi 97.5 0.00059 1.3E-08 62.5 10.0 30 248-277 2-34 (187)
286 TIGR02012 tigrfam_recA protein 97.5 0.00022 4.8E-09 71.4 7.5 70 241-310 51-147 (321)
287 PRK06067 flagellar accessory p 97.5 0.00036 7.8E-09 66.8 8.6 38 241-278 21-61 (234)
288 PRK13947 shikimate kinase; Pro 97.5 9.5E-05 2E-09 67.0 4.3 32 247-278 3-34 (171)
289 cd00464 SK Shikimate kinase (S 97.5 9.7E-05 2.1E-09 65.5 4.1 31 247-277 1-31 (154)
290 COG1241 MCM2 Predicted ATPase 97.5 0.00017 3.8E-09 78.3 6.6 63 247-309 321-396 (682)
291 PRK04841 transcriptional regul 97.5 0.0036 7.7E-08 71.5 17.7 152 245-426 32-227 (903)
292 PRK03839 putative kinase; Prov 97.5 9E-05 2E-09 67.9 3.9 30 248-277 3-32 (180)
293 cd01393 recA_like RecA is a b 97.5 0.00045 9.8E-09 65.5 8.6 40 241-280 15-63 (226)
294 KOG2228 Origin recognition com 97.5 0.00095 2.1E-08 66.2 10.9 156 212-399 25-222 (408)
295 PRK00625 shikimate kinase; Pro 97.5 0.0001 2.2E-09 67.5 4.0 31 247-277 2-32 (173)
296 COG1485 Predicted ATPase [Gene 97.5 0.00029 6.3E-09 70.3 7.4 98 243-364 63-175 (367)
297 COG1618 Predicted nucleotide k 97.5 0.0007 1.5E-08 60.5 8.8 26 245-270 5-30 (179)
298 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00057 1.2E-08 64.7 9.0 21 246-266 30-50 (213)
299 PF13671 AAA_33: AAA domain; P 97.5 7E-05 1.5E-09 65.5 2.6 27 248-274 2-28 (143)
300 PRK13949 shikimate kinase; Pro 97.4 0.00012 2.7E-09 66.7 4.0 31 247-277 3-33 (169)
301 PRK14737 gmk guanylate kinase; 97.4 0.00034 7.3E-09 64.8 6.9 27 244-270 3-29 (186)
302 PF08298 AAA_PrkA: PrkA AAA do 97.4 0.00058 1.3E-08 68.6 8.8 65 210-281 59-125 (358)
303 cd00983 recA RecA is a bacter 97.4 0.0006 1.3E-08 68.4 8.9 70 241-310 51-147 (325)
304 PF13604 AAA_30: AAA domain; P 97.4 0.0019 4.1E-08 60.3 11.6 64 245-308 18-105 (196)
305 KOG3347 Predicted nucleotide k 97.4 0.00015 3.2E-09 63.8 3.8 32 245-276 7-38 (176)
306 PF13191 AAA_16: AAA ATPase do 97.4 9.4E-05 2E-09 67.4 2.7 59 213-281 2-63 (185)
307 TIGR03499 FlhF flagellar biosy 97.4 0.001 2.2E-08 65.7 10.1 61 245-305 194-281 (282)
308 COG0703 AroK Shikimate kinase 97.4 0.00014 2.9E-09 66.1 3.5 32 246-277 3-34 (172)
309 PRK06581 DNA polymerase III su 97.4 0.0035 7.5E-08 60.0 13.0 126 245-398 15-163 (263)
310 cd00544 CobU Adenosylcobinamid 97.4 0.0013 2.7E-08 60.1 9.7 63 248-310 2-87 (169)
311 PRK09376 rho transcription ter 97.4 0.0013 2.9E-08 67.2 10.7 23 248-270 172-194 (416)
312 PTZ00202 tuzin; Provisional 97.3 0.013 2.8E-07 60.8 17.5 76 206-293 257-332 (550)
313 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00019 4.2E-09 65.7 4.0 28 248-275 2-29 (183)
314 PRK06217 hypothetical protein; 97.3 0.00021 4.5E-09 65.9 4.1 31 247-277 3-33 (183)
315 PRK13948 shikimate kinase; Pro 97.3 0.00026 5.6E-09 65.4 4.7 34 244-277 9-42 (182)
316 PRK13765 ATP-dependent proteas 97.3 0.00048 1.1E-08 75.1 7.5 51 206-271 26-76 (637)
317 PRK11823 DNA repair protein Ra 97.3 0.00061 1.3E-08 71.6 7.9 70 241-310 76-170 (446)
318 cd02021 GntK Gluconate kinase 97.3 0.00021 4.6E-09 63.3 3.8 28 248-275 2-29 (150)
319 PF08740 BCS1_N: BCS1 N termin 97.3 0.015 3.2E-07 53.7 16.1 138 52-213 27-187 (187)
320 PRK14531 adenylate kinase; Pro 97.3 0.00028 6E-09 65.1 4.5 31 246-276 3-33 (183)
321 PRK00771 signal recognition pa 97.3 0.0026 5.6E-08 66.5 12.0 63 218-281 69-134 (437)
322 PRK14532 adenylate kinase; Pro 97.3 0.00024 5.3E-09 65.5 4.0 30 247-276 2-31 (188)
323 cd02020 CMPK Cytidine monophos 97.3 0.00026 5.7E-09 62.0 3.8 30 248-277 2-31 (147)
324 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0009 1.9E-08 65.3 7.7 39 241-279 32-73 (259)
325 TIGR01313 therm_gnt_kin carboh 97.2 0.00026 5.7E-09 63.7 3.6 28 248-275 1-28 (163)
326 PRK13946 shikimate kinase; Pro 97.2 0.00031 6.8E-09 64.8 4.2 34 245-278 10-43 (184)
327 cd01428 ADK Adenylate kinase ( 97.2 0.00029 6.4E-09 65.0 4.0 29 248-276 2-30 (194)
328 PRK08154 anaerobic benzoate ca 97.2 0.00072 1.6E-08 67.7 7.0 58 215-277 108-165 (309)
329 PRK05057 aroK shikimate kinase 97.2 0.00036 7.9E-09 63.7 4.4 34 245-278 4-37 (172)
330 PRK08533 flagellar accessory p 97.2 0.0018 4E-08 62.0 9.5 37 241-277 20-59 (230)
331 PF06745 KaiC: KaiC; InterPro 97.2 0.001 2.2E-08 63.3 7.6 40 241-280 15-58 (226)
332 cd03283 ABC_MutS-like MutS-lik 97.2 0.0016 3.5E-08 61.0 8.7 64 245-308 25-117 (199)
333 PRK13808 adenylate kinase; Pro 97.2 0.0062 1.3E-07 61.3 13.3 29 248-276 3-31 (333)
334 PF06431 Polyoma_lg_T_C: Polyo 97.2 0.0019 4.1E-08 64.8 9.3 137 221-382 139-285 (417)
335 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0012 2.5E-08 63.1 7.5 53 241-293 15-76 (235)
336 PF00437 T2SE: Type II/IV secr 97.1 0.001 2.2E-08 65.1 7.0 90 206-306 99-207 (270)
337 PRK03731 aroL shikimate kinase 97.1 0.00047 1E-08 62.5 4.3 32 247-278 4-35 (171)
338 COG4650 RtcR Sigma54-dependent 97.1 0.001 2.2E-08 64.8 6.7 65 245-309 208-295 (531)
339 PRK14530 adenylate kinase; Pro 97.1 0.00049 1.1E-08 65.1 4.3 30 247-276 5-34 (215)
340 PF13086 AAA_11: AAA domain; P 97.1 0.00047 1E-08 64.9 4.2 22 248-269 20-41 (236)
341 PRK05703 flhF flagellar biosyn 97.1 0.0066 1.4E-07 63.4 13.1 62 245-306 221-309 (424)
342 PRK06762 hypothetical protein; 97.1 0.00059 1.3E-08 61.5 4.6 33 245-277 2-34 (166)
343 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.00081 1.8E-08 60.2 5.3 66 245-310 25-112 (157)
344 cd01121 Sms Sms (bacterial rad 97.1 0.0033 7.2E-08 64.5 10.4 70 241-310 78-172 (372)
345 PRK12608 transcription termina 97.1 0.0051 1.1E-07 62.7 11.5 23 248-270 136-158 (380)
346 PF13245 AAA_19: Part of AAA d 97.1 0.00088 1.9E-08 52.7 4.7 33 247-279 12-51 (76)
347 cd00046 DEXDc DEAD-like helica 97.1 0.002 4.3E-08 54.6 7.4 24 246-269 1-24 (144)
348 PRK05973 replicative DNA helic 97.0 0.0034 7.4E-08 60.3 9.5 37 241-277 60-99 (237)
349 cd00227 CPT Chloramphenicol (C 97.0 0.00051 1.1E-08 62.7 3.7 32 246-277 3-34 (175)
350 PRK06547 hypothetical protein; 97.0 0.0007 1.5E-08 61.9 4.5 33 245-277 15-47 (172)
351 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0041 8.9E-08 59.8 10.0 51 241-293 17-70 (237)
352 KOG0482 DNA replication licens 97.0 0.00063 1.4E-08 70.5 4.5 166 212-398 343-541 (721)
353 PRK09354 recA recombinase A; P 97.0 0.0017 3.7E-08 65.7 7.5 70 241-310 56-152 (349)
354 PF04665 Pox_A32: Poxvirus A32 97.0 0.011 2.4E-07 56.9 12.6 127 245-399 13-173 (241)
355 COG1102 Cmk Cytidylate kinase 97.0 0.0006 1.3E-08 60.9 3.7 28 248-275 3-30 (179)
356 PRK14528 adenylate kinase; Pro 97.0 0.00067 1.4E-08 62.8 4.2 30 247-276 3-32 (186)
357 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00066 1.4E-08 62.2 4.1 30 246-275 4-33 (188)
358 smart00072 GuKc Guanylate kina 97.0 0.0023 5E-08 58.9 7.7 25 245-269 2-26 (184)
359 COG1936 Predicted nucleotide k 97.0 0.00052 1.1E-08 62.0 3.1 30 247-277 2-31 (180)
360 PRK02496 adk adenylate kinase; 97.0 0.00063 1.4E-08 62.5 3.8 29 248-276 4-32 (184)
361 TIGR01613 primase_Cterm phage/ 97.0 0.0037 8.1E-08 62.4 9.5 88 210-307 47-139 (304)
362 PRK11889 flhF flagellar biosyn 97.0 0.011 2.3E-07 60.8 12.7 49 217-269 217-265 (436)
363 PRK04328 hypothetical protein; 97.0 0.0053 1.1E-07 59.5 10.2 51 241-293 19-72 (249)
364 COG1855 ATPase (PilT family) [ 97.0 0.00088 1.9E-08 68.6 4.8 105 143-271 170-289 (604)
365 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0021 4.7E-08 56.8 6.8 63 245-310 26-102 (144)
366 PTZ00088 adenylate kinase 1; P 96.9 0.00077 1.7E-08 64.5 4.0 31 247-277 8-38 (229)
367 KOG1051 Chaperone HSP104 and r 96.9 0.005 1.1E-07 68.9 10.8 149 210-393 185-360 (898)
368 TIGR01351 adk adenylate kinase 96.9 0.00077 1.7E-08 63.5 3.9 29 248-276 2-30 (210)
369 cd02019 NK Nucleoside/nucleoti 96.9 0.0014 3E-08 50.4 4.5 30 248-277 2-32 (69)
370 PF07693 KAP_NTPase: KAP famil 96.9 0.012 2.7E-07 58.8 12.7 30 243-272 18-47 (325)
371 TIGR00767 rho transcription te 96.9 0.004 8.6E-08 64.0 9.0 25 246-270 169-193 (415)
372 PRK06696 uridine kinase; Valid 96.9 0.0026 5.6E-08 60.5 7.3 39 245-283 22-63 (223)
373 PLN02200 adenylate kinase fami 96.9 0.001 2.3E-08 63.9 4.6 35 245-281 43-77 (234)
374 PRK00279 adk adenylate kinase; 96.9 0.00088 1.9E-08 63.3 4.1 29 248-276 3-31 (215)
375 PF13238 AAA_18: AAA domain; P 96.9 0.00069 1.5E-08 57.7 2.8 22 248-269 1-22 (129)
376 PRK14527 adenylate kinase; Pro 96.9 0.00087 1.9E-08 62.1 3.7 31 245-275 6-36 (191)
377 COG2874 FlaH Predicted ATPases 96.9 0.0025 5.5E-08 59.5 6.4 34 234-267 15-50 (235)
378 KOG0477 DNA replication licens 96.9 0.0017 3.6E-08 68.9 5.8 63 248-310 485-560 (854)
379 COG0563 Adk Adenylate kinase a 96.8 0.00082 1.8E-08 61.8 3.1 33 247-281 2-34 (178)
380 cd01128 rho_factor Transcripti 96.8 0.004 8.7E-08 60.4 8.0 27 245-271 16-42 (249)
381 COG5271 MDN1 AAA ATPase contai 96.8 0.02 4.2E-07 67.0 14.0 129 246-396 889-1047(4600)
382 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.0053 1.1E-07 58.5 8.6 63 245-307 31-121 (222)
383 PRK04182 cytidylate kinase; Pr 96.8 0.0011 2.5E-08 60.1 3.9 29 247-275 2-30 (180)
384 TIGR02782 TrbB_P P-type conjug 96.8 0.0037 7.9E-08 62.4 7.7 62 245-306 132-214 (299)
385 PRK04296 thymidine kinase; Pro 96.8 0.0059 1.3E-07 56.7 8.5 30 247-276 4-36 (190)
386 PLN02199 shikimate kinase 96.8 0.0025 5.5E-08 62.8 6.3 33 245-277 102-134 (303)
387 PRK00409 recombination and DNA 96.8 0.0089 1.9E-07 67.1 11.3 64 245-308 327-419 (782)
388 KOG2543 Origin recognition com 96.8 0.01 2.3E-07 59.9 10.5 128 244-395 29-192 (438)
389 cd03243 ABC_MutS_homologs The 96.8 0.0068 1.5E-07 56.7 8.9 64 246-309 30-121 (202)
390 TIGR02173 cyt_kin_arch cytidyl 96.8 0.0013 2.8E-08 59.3 3.9 29 248-276 3-31 (171)
391 TIGR01069 mutS2 MutS2 family p 96.8 0.0093 2E-07 66.9 11.3 23 246-268 323-345 (771)
392 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0062 1.3E-07 59.6 8.8 85 208-306 57-159 (264)
393 smart00534 MUTSac ATPase domai 96.8 0.0062 1.4E-07 56.2 8.4 62 248-309 2-91 (185)
394 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.0053 1.1E-07 57.4 8.0 21 246-266 29-49 (200)
395 PF13521 AAA_28: AAA domain; P 96.7 0.00096 2.1E-08 60.1 2.8 26 248-274 2-27 (163)
396 PF00406 ADK: Adenylate kinase 96.7 0.00096 2.1E-08 59.3 2.7 26 250-275 1-26 (151)
397 PHA00350 putative assembly pro 96.7 0.0023 5E-08 65.9 5.7 121 247-376 3-158 (399)
398 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0032 7E-08 55.0 5.9 28 245-272 22-49 (133)
399 COG3267 ExeA Type II secretory 96.7 0.043 9.3E-07 52.8 13.8 160 245-426 50-247 (269)
400 PRK04040 adenylate kinase; Pro 96.7 0.0016 3.4E-08 60.5 4.1 29 246-274 3-33 (188)
401 PRK01184 hypothetical protein; 96.7 0.0014 3.1E-08 60.1 3.8 29 247-276 3-31 (184)
402 PRK04301 radA DNA repair and r 96.7 0.0049 1.1E-07 61.9 7.9 54 241-294 98-160 (317)
403 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0041 9E-08 57.1 6.7 66 245-310 25-103 (177)
404 PF01745 IPT: Isopentenyl tran 96.7 0.0015 3.3E-08 61.1 3.8 35 247-281 3-37 (233)
405 cd03216 ABC_Carb_Monos_I This 96.7 0.0043 9.4E-08 56.0 6.7 66 245-310 26-114 (163)
406 PF02367 UPF0079: Uncharacteri 96.7 0.0061 1.3E-07 52.5 7.1 64 245-308 15-100 (123)
407 TIGR02858 spore_III_AA stage I 96.7 0.0064 1.4E-07 59.7 8.1 25 246-270 112-136 (270)
408 cd02027 APSK Adenosine 5'-phos 96.6 0.0022 4.7E-08 57.1 4.3 30 248-277 2-34 (149)
409 PF08433 KTI12: Chromatin asso 96.6 0.0029 6.3E-08 62.1 5.4 61 248-308 4-82 (270)
410 COG0467 RAD55 RecA-superfamily 96.6 0.0046 1E-07 60.2 6.8 50 241-292 19-71 (260)
411 PRK08233 hypothetical protein; 96.6 0.0022 4.8E-08 58.4 4.3 32 246-277 4-36 (182)
412 PHA02530 pseT polynucleotide k 96.6 0.0018 4E-08 64.2 4.1 30 246-275 3-33 (300)
413 PRK14526 adenylate kinase; Pro 96.6 0.0022 4.7E-08 60.7 4.0 28 248-275 3-30 (211)
414 TIGR02238 recomb_DMC1 meiotic 96.6 0.0075 1.6E-07 60.5 8.0 54 241-294 92-154 (313)
415 TIGR02236 recomb_radA DNA repa 96.6 0.0054 1.2E-07 61.3 7.1 40 241-280 91-139 (310)
416 COG0194 Gmk Guanylate kinase [ 96.6 0.016 3.4E-07 53.2 9.3 68 376-447 116-185 (191)
417 PRK10646 ADP-binding protein; 96.5 0.018 3.9E-07 51.5 9.5 27 245-271 28-54 (153)
418 cd03282 ABC_MSH4_euk MutS4 hom 96.5 0.007 1.5E-07 56.9 7.2 63 245-307 29-119 (204)
419 PF08423 Rad51: Rad51; InterP 96.5 0.012 2.6E-07 57.4 8.9 99 241-347 34-176 (256)
420 PRK10078 ribose 1,5-bisphospho 96.5 0.0024 5.2E-08 58.9 3.9 30 246-275 3-32 (186)
421 PRK12727 flagellar biosynthesi 96.5 0.01 2.3E-07 63.0 9.0 64 244-307 349-439 (559)
422 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0027 5.8E-08 61.5 4.3 31 248-278 2-35 (249)
423 PLN03187 meiotic recombination 96.5 0.0066 1.4E-07 61.5 7.2 54 241-294 122-184 (344)
424 PRK12724 flagellar biosynthesi 96.5 0.046 1E-06 56.7 13.3 35 245-279 223-261 (432)
425 PRK13833 conjugal transfer pro 96.5 0.007 1.5E-07 60.9 7.2 62 245-306 144-225 (323)
426 PF10236 DAP3: Mitochondrial r 96.5 0.18 3.8E-06 50.6 17.2 99 296-399 156-280 (309)
427 PF00519 PPV_E1_C: Papillomavi 96.5 0.0056 1.2E-07 62.1 6.4 60 241-306 258-317 (432)
428 TIGR00416 sms DNA repair prote 96.5 0.0098 2.1E-07 62.8 8.4 69 241-309 90-183 (454)
429 PRK12339 2-phosphoglycerate ki 96.4 0.0032 7E-08 58.9 4.3 29 245-273 3-31 (197)
430 cd03228 ABCC_MRP_Like The MRP 96.4 0.0096 2.1E-07 54.1 7.2 26 244-269 27-52 (171)
431 PRK09519 recA DNA recombinatio 96.4 0.0081 1.7E-07 66.8 7.9 70 241-310 56-152 (790)
432 TIGR01448 recD_rel helicase, p 96.4 0.02 4.3E-07 64.0 11.0 63 246-308 339-428 (720)
433 PRK13894 conjugal transfer ATP 96.4 0.012 2.6E-07 59.2 8.5 25 245-269 148-172 (319)
434 PF13479 AAA_24: AAA domain 96.4 0.0022 4.7E-08 60.7 3.0 60 246-309 4-81 (213)
435 PLN02459 probable adenylate ki 96.4 0.0037 8.1E-08 60.8 4.5 30 246-275 30-59 (261)
436 PRK14021 bifunctional shikimat 96.4 0.0033 7.2E-08 67.8 4.6 32 247-278 8-39 (542)
437 PF12780 AAA_8: P-loop contain 96.4 0.014 3.1E-07 57.2 8.6 61 246-306 32-99 (268)
438 TIGR02525 plasmid_TraJ plasmid 96.4 0.012 2.6E-07 60.4 8.3 23 247-269 151-173 (372)
439 PLN02674 adenylate kinase 96.4 0.0037 8E-08 60.4 4.3 31 245-275 31-61 (244)
440 PRK00889 adenylylsulfate kinas 96.4 0.0047 1E-07 56.2 4.8 33 245-277 4-39 (175)
441 COG3378 Phage associated DNA p 96.4 0.014 3E-07 62.1 8.8 91 210-307 201-293 (517)
442 KOG2383 Predicted ATPase [Gene 96.3 0.013 2.8E-07 59.5 8.1 24 244-267 113-136 (467)
443 COG2804 PulE Type II secretory 96.3 0.017 3.8E-07 60.5 9.2 83 207-306 234-337 (500)
444 PRK13764 ATPase; Provisional 96.3 0.0043 9.3E-08 67.2 4.9 62 245-307 257-335 (602)
445 PRK05541 adenylylsulfate kinas 96.3 0.005 1.1E-07 56.1 4.7 26 245-270 7-32 (176)
446 PRK14529 adenylate kinase; Pro 96.3 0.0032 6.8E-08 60.0 3.4 27 248-274 3-29 (223)
447 cd02022 DPCK Dephospho-coenzym 96.3 0.0041 8.9E-08 57.1 4.0 29 248-277 2-30 (179)
448 cd03246 ABCC_Protease_Secretio 96.3 0.014 3E-07 53.1 7.5 25 245-269 28-52 (173)
449 PF09848 DUF2075: Uncharacteri 96.3 0.007 1.5E-07 61.7 6.1 24 246-269 2-25 (352)
450 smart00487 DEXDc DEAD-like hel 96.3 0.013 2.8E-07 52.9 7.2 25 246-270 25-50 (201)
451 PF05970 PIF1: PIF1-like helic 96.3 0.019 4.1E-07 58.9 9.0 27 245-271 22-48 (364)
452 PRK12338 hypothetical protein; 96.3 0.0041 9E-08 62.2 4.0 29 245-273 4-32 (319)
453 TIGR02322 phosphon_PhnN phosph 96.2 0.0039 8.5E-08 56.9 3.6 25 247-271 3-27 (179)
454 PTZ00035 Rad51 protein; Provis 96.2 0.014 3.1E-07 59.1 7.8 54 241-294 114-176 (337)
455 KOG3354 Gluconate kinase [Carb 96.2 0.0043 9.3E-08 55.1 3.4 46 243-290 10-55 (191)
456 cd03286 ABC_MSH6_euk MutS6 hom 96.2 0.017 3.7E-07 54.8 7.8 63 245-307 30-120 (218)
457 COG0529 CysC Adenylylsulfate k 96.2 0.0078 1.7E-07 54.7 5.1 37 245-281 23-62 (197)
458 PLN02165 adenylate isopentenyl 96.2 0.0048 1E-07 62.0 4.2 35 245-279 43-77 (334)
459 PRK10436 hypothetical protein; 96.2 0.032 7E-07 58.9 10.5 85 207-306 194-297 (462)
460 cd01130 VirB11-like_ATPase Typ 96.2 0.0046 9.9E-08 57.1 3.7 26 245-270 25-50 (186)
461 PF00448 SRP54: SRP54-type pro 96.2 0.0047 1E-07 57.7 3.8 25 245-269 1-25 (196)
462 PF03266 NTPase_1: NTPase; In 96.2 0.0041 8.9E-08 56.6 3.3 22 248-269 2-23 (168)
463 TIGR03880 KaiC_arch_3 KaiC dom 96.2 0.013 2.9E-07 55.5 6.9 38 241-278 12-52 (224)
464 PLN03186 DNA repair protein RA 96.2 0.018 3.9E-07 58.4 8.2 54 241-294 119-181 (342)
465 cd03227 ABC_Class2 ABC-type Cl 96.2 0.015 3.3E-07 52.4 6.9 65 246-310 22-113 (162)
466 cd00984 DnaB_C DnaB helicase C 96.2 0.0075 1.6E-07 57.7 5.2 39 241-279 9-51 (242)
467 COG3284 AcoR Transcriptional a 96.1 0.013 2.9E-07 62.6 7.4 131 244-399 335-502 (606)
468 PF13555 AAA_29: P-loop contai 96.1 0.0048 1E-07 46.4 2.9 23 247-269 25-47 (62)
469 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.049 1.1E-06 49.1 10.0 28 248-275 5-35 (159)
470 PF06414 Zeta_toxin: Zeta toxi 96.1 0.0062 1.3E-07 56.8 4.3 39 244-282 14-53 (199)
471 cd04177 RSR1 RSR1 subgroup. R 96.1 0.027 5.8E-07 50.5 8.3 22 247-268 3-24 (168)
472 TIGR00064 ftsY signal recognit 96.1 0.016 3.5E-07 56.9 7.3 36 245-280 72-110 (272)
473 TIGR02655 circ_KaiC circadian 96.1 0.012 2.5E-07 62.8 6.8 51 241-293 17-71 (484)
474 cd03238 ABC_UvrA The excision 96.1 0.022 4.8E-07 52.2 7.7 23 245-267 21-43 (176)
475 PRK09825 idnK D-gluconate kina 96.1 0.011 2.5E-07 54.1 5.8 35 246-282 4-38 (176)
476 cd04159 Arl10_like Arl10-like 96.1 0.012 2.6E-07 51.3 5.8 21 248-268 2-22 (159)
477 PRK13975 thymidylate kinase; P 96.1 0.0084 1.8E-07 55.4 4.9 28 246-273 3-30 (196)
478 PRK00300 gmk guanylate kinase; 96.1 0.0067 1.5E-07 56.6 4.3 27 244-270 4-30 (205)
479 PF01583 APS_kinase: Adenylyls 96.1 0.0077 1.7E-07 54.1 4.5 36 246-281 3-41 (156)
480 cd02028 UMPK_like Uridine mono 96.1 0.007 1.5E-07 55.6 4.3 34 248-281 2-38 (179)
481 KOG1808 AAA ATPase containing 96.1 0.057 1.2E-06 64.6 12.6 91 207-308 412-519 (1856)
482 KOG0481 DNA replication licens 96.1 0.011 2.5E-07 61.5 6.1 136 247-397 366-529 (729)
483 PRK12337 2-phosphoglycerate ki 96.0 0.017 3.6E-07 60.5 7.4 29 244-272 254-282 (475)
484 TIGR02655 circ_KaiC circadian 96.0 0.012 2.7E-07 62.5 6.7 29 241-269 259-287 (484)
485 PF00488 MutS_V: MutS domain V 96.0 0.034 7.4E-07 53.5 9.0 62 246-307 44-133 (235)
486 PF01443 Viral_helicase1: Vira 96.0 0.0047 1E-07 58.6 3.0 22 248-269 1-22 (234)
487 PRK14730 coaE dephospho-CoA ki 96.0 0.0064 1.4E-07 56.7 3.9 31 247-277 3-33 (195)
488 cd04119 RJL RJL (RabJ-Like) su 96.0 0.029 6.3E-07 49.6 8.0 22 247-268 2-23 (168)
489 cd03284 ABC_MutS1 MutS1 homolo 96.0 0.016 3.4E-07 55.0 6.5 61 246-306 31-119 (216)
490 PRK05480 uridine/cytidine kina 96.0 0.0093 2E-07 56.0 4.9 35 245-279 6-41 (209)
491 smart00173 RAS Ras subfamily o 96.0 0.041 9E-07 48.7 8.9 20 248-267 3-22 (164)
492 TIGR03263 guanyl_kin guanylate 96.0 0.0052 1.1E-07 56.0 3.1 26 246-271 2-27 (180)
493 COG1419 FlhF Flagellar GTP-bin 96.0 0.022 4.8E-07 58.4 7.8 62 245-306 203-291 (407)
494 PRK00091 miaA tRNA delta(2)-is 96.0 0.0078 1.7E-07 60.2 4.5 34 245-278 4-37 (307)
495 TIGR02533 type_II_gspE general 96.0 0.029 6.3E-07 59.7 9.1 85 207-306 218-321 (486)
496 PRK10416 signal recognition pa 96.0 0.011 2.3E-07 59.6 5.5 34 245-278 114-150 (318)
497 TIGR02538 type_IV_pilB type IV 96.0 0.033 7.3E-07 60.4 9.7 85 208-307 293-396 (564)
498 TIGR02239 recomb_RAD51 DNA rep 96.0 0.022 4.7E-07 57.3 7.7 53 241-293 92-153 (316)
499 PRK13889 conjugal transfer rel 96.0 0.041 8.9E-07 63.0 10.7 62 247-308 364-445 (988)
500 cd03115 SRP The signal recogni 95.9 0.0097 2.1E-07 54.0 4.6 34 248-281 3-39 (173)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-101 Score=765.61 Aligned_cols=435 Identities=49% Similarity=0.852 Sum_probs=407.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhhccCCCceEEEEecCCCCcchHHHHHHHHHhccCCCCCCCc
Q 012846 6 TIVSTAASVAASAMVIRSIARELVPHELKLFVLMNIRGLFESFSSEITLIIDQFDGLASNQIYRAADIYLGNKISPSTKM 85 (455)
Q Consensus 6 ~~~~~~~S~~a~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~~~~~~ti~i~e~~~~~~n~~y~a~~~YL~t~~~~~~~r 85 (455)
++|+.+||++|++|++|+|+++++|.+++.|+.+++++|++.++++.++.|.|++|+.+|++|.|+|.||++++++.+.|
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~~r 81 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIAKR 81 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCceEEeccCCCeEEEeecCeeEEEEEEEeeccccccccccCccCCCCCcceEEEEEecCcchhhHHHhhhH
Q 012846 86 FRVSMPEKENKMSISMAKNQEIVDHFDGVKLKWKQVTRQVESTQYVSYTGQSTKMQSEIRYFNLTFHKQHKDKVLNSYFP 165 (455)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vl~~yl~ 165 (455)
++.+...+++++++.++++++|.|+|+||+++|.+++...+.+ .. .....++|+|+|+|++++++.|+.+||+
T Consensus 82 l~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~-~~------~~~~~~~r~~~L~f~k~~~e~V~~syl~ 154 (457)
T KOG0743|consen 82 LTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKW-IF------VEREREKRYFELTFHKKPRELVTLSYLP 154 (457)
T ss_pred hhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCcc-cc------cccCCcceEEEEEecCccHHHhHHhHHH
Confidence 9999999999999999999999999999999999999876654 22 1345688999999999999999999999
Q ss_pred HHHHhhhHHHhcCceeEEEecccc-cccccCCCceeeeecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCC
Q 012846 166 YILRKSKSAQEENKTLKLYSLNQD-HARRFGLDSWHWITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAW 244 (455)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~ 244 (455)
++..++++|..+++.+++|+++.+ .|+...+..|+.+.++||++|++|+|++++|++|++|+..|++++++|+++|+||
T Consensus 155 ~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkaw 234 (457)
T KOG0743|consen 155 YVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAW 234 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcch
Confidence 999999999999999999999865 3565567899999999999999999999999999999999999999999999999
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCcccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVL 324 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~ 324 (455)
+||||||||||||||++++|||++|++++|+++++++..+.+|+++|..++++|||+||||||.+..+.+..........
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~ 314 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEG 314 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999877776554322111
Q ss_pred CCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC-CCc
Q 012846 325 KPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD-HPL 403 (455)
Q Consensus 325 ~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~-~~l 403 (455)
..+.+|||+|||++||+|++||+++||||||||+++|||||+||||||+||+|++|++++++.|+++||+..+ |++
T Consensus 315 ---~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L 391 (457)
T KOG0743|consen 315 ---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRL 391 (457)
T ss_pred ---CcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcch
Confidence 1467999999999999999999999999999999999999999999999999999999999999999999975 999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhhhhh
Q 012846 404 IYEIKEIMQNVRVTPADVGEQLLKNE-DPEIALKGLLEFLNAKLIEGC 450 (455)
Q Consensus 404 ~~~i~~l~~~~~~tpa~i~~~l~~~~-~~~~al~~l~~~l~~~~~~~~ 450 (455)
+++|++++.+..+|||||++.||++. |++.|+++|+++|+.++.+..
T Consensus 392 ~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~ 439 (457)
T KOG0743|consen 392 FDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRN 439 (457)
T ss_pred hHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999999999887 899999999999999887443
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-42 Score=335.03 Aligned_cols=234 Identities=24% Similarity=0.309 Sum_probs=191.3
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-- 282 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~-- 282 (455)
.+..++++|.|.++++++|.+.++.++.+|+.|..+|+.+|+|+|||||||||||+||+|+|++.+..|+.+..+++.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 344689999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred ---ChHH-HHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ---SNSE-LRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ---~~~~-L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
.... ++++|.-+. .||||||||||++...+-..+.++. ++.++|+-+||+.|||+... +++-||+
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gD-------rEVQRTmleLL~qlDGFD~~--~nvKVI~ 295 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGD-------REVQRTMLELLNQLDGFDPR--GNVKVIM 295 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCch-------HHHHHHHHHHHHhccCCCCC--CCeEEEE
Confidence 3344 556665443 7999999999999875443332221 16789999999999999664 6799999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHHc-------C
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLLK-------N 428 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~-------~ 428 (455)
+||+++.|||||+||||||+.|+||+|+.++|.+|++.+.......-.-+++.++... ++|+||+..+|.. .
T Consensus 296 ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~ 375 (406)
T COG1222 296 ATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE 375 (406)
T ss_pred ecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh
Confidence 9999999999999999999999999999999999999988766444334455554432 4999999999863 3
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 012846 429 EDPEIALKGLLEFLNAKLI 447 (455)
Q Consensus 429 ~~~~~al~~l~~~l~~~~~ 447 (455)
+......+++.++.++...
T Consensus 376 ~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 376 RRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ccCeecHHHHHHHHHHHHh
Confidence 4445555666666654433
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-37 Score=321.56 Aligned_cols=209 Identities=24% Similarity=0.361 Sum_probs=186.4
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--- 282 (455)
+..+|++|+|.+++|++|.+.+..++++++.|.++|..+++|+|||||||||||++|+|+|++.+.+|+.+.+.++.
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999888774
Q ss_pred ---ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 283 ---SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 283 ---~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
++..++++|.++. .||||||||||++...++ +..+. ...+.+++||+.|||+... .+++||++
T Consensus 509 vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~--g~~~~--------v~~RVlsqLLtEmDG~e~~--k~V~ViAA 576 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG--GSSSG--------VTDRVLSQLLTEMDGLEAL--KNVLVIAA 576 (693)
T ss_pred cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC--CCccc--------hHHHHHHHHHHHccccccc--CcEEEEec
Confidence 5788999998876 699999999999987443 22221 6778999999999999765 56999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
||+|+.||+||+||||||..|++|.|+.+.|.+|++.++......-..++++|++.+ ++|+|||.++|-
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHH
Confidence 999999999999999999999999999999999999999877655556777777755 599999999875
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-37 Score=311.31 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=178.8
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC----
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH---- 282 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~---- 282 (455)
..+|+++-|-++.|+++.+.+ .|++.|+.|.++|-..|+|+||.||||||||+||+|+|.+.+.|||....+++.
T Consensus 300 nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 457999999999999997654 699999999999999999999999999999999999999999999999888874
Q ss_pred --ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec
Q 012846 283 --SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358 (455)
Q Consensus 283 --~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT 358 (455)
....+|.+|..+. .||||||||||++..++...... ..+.|+++||..|||+..+ +++|||++|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~----------y~kqTlNQLLvEmDGF~qN--eGiIvigAT 446 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH----------YAKQTLNQLLVEMDGFKQN--EGIIVIGAT 446 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH----------HHHHHHHHHHHHhcCcCcC--CceEEEecc
Confidence 4688999998775 79999999999998754432211 5788999999999999776 559999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHH
Q 012846 359 NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQL 425 (455)
Q Consensus 359 N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 425 (455)
|.|+.||+||+||||||++|.+|.|+...|.+|++.|+....+.-..+..-++... ++|+||++++.
T Consensus 447 Nfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 447 NFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred CChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999876554444555555544 79999998764
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-36 Score=305.47 Aligned_cols=209 Identities=24% Similarity=0.341 Sum_probs=181.0
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--- 282 (455)
+..+|++|.+.++++.++...+..++++++.|+.+|+..|.|+|||||||||||.||+|+||+.+.+|+.+...++.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999877763
Q ss_pred ---ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 283 ---SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 283 ---~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
++..++++|..+. .||||||||||++.+.++..... .+.+.+++||..|||+.... ++.||++
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~----------~s~RvvNqLLtElDGl~~R~--gV~viaA 653 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSS----------VSSRVVNQLLTELDGLEERR--GVYVIAA 653 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCch----------hHHHHHHHHHHHhccccccc--ceEEEee
Confidence 5688999998875 79999999999999855443311 56788999999999998764 4999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH-----HHHHHHhhcCCCCHHHHHHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI-----YEIKEIMQNVRVTPADVGEQLL 426 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-----~~i~~l~~~~~~tpa~i~~~l~ 426 (455)
||+|+.+|||++||||||..++++.|+.++|..|++........++. ++|.....-.++|+||++.++.
T Consensus 654 TNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 654 TNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred cCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 99999999999999999999999999999999999998885433333 3444444444799999988753
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-35 Score=297.38 Aligned_cols=220 Identities=21% Similarity=0.311 Sum_probs=182.9
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC-----
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH----- 282 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~----- 282 (455)
.+|.+|.|.+....++.+.+.. +.+|+.|..+|..++||+|||||||||||+||+|+|++++.|++.++..++.
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 4799999999999999988876 9999999999999999999999999999999999999999999999988874
Q ss_pred -ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC--CCCceEEEEe
Q 012846 283 -SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS--CGDERIIVFT 357 (455)
Q Consensus 283 -~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~--~~~~~iiI~t 357 (455)
++.+++++|..+. .|||+||||||++.+.+...+.. ..++++++||+.||++... .|+.++||++
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqre----------MErRiVaQLlt~mD~l~~~~~~g~~VlVIgA 335 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQRE----------MERRIVAQLLTSMDELSNEKTKGDPVLVIGA 335 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHH----------HHHHHHHHHHHhhhcccccccCCCCeEEEec
Confidence 5789999998885 79999999999998855442221 5678899999999998654 3577999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHHcCCCHHHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLLKNEDPEIALK 436 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~~~~~~~al~ 436 (455)
||+|+.|||||.|+||||..|.+..|+..+|.+|++..+....+...-++..++..+ ++-+||+..++.. ....|++
T Consensus 336 TnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~--Aa~vAik 413 (802)
T KOG0733|consen 336 TNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCRE--AAFVAIK 413 (802)
T ss_pred CCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHH--HHHHHHH
Confidence 999999999999999999999999999999999999988765555444444554432 3677777666443 4445555
Q ss_pred HHHH
Q 012846 437 GLLE 440 (455)
Q Consensus 437 ~l~~ 440 (455)
.+.+
T Consensus 414 R~ld 417 (802)
T KOG0733|consen 414 RILD 417 (802)
T ss_pred HHhh
Confidence 5433
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-35 Score=303.56 Aligned_cols=229 Identities=24% Similarity=0.333 Sum_probs=184.4
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--- 282 (455)
+..+|+||+|.+++|++|.+.+..++++++.|.. |...+.|+|||||||||||.+|+|+|.++...|+.+...++-
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMY 745 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMY 745 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHH
Confidence 3457999999999999999999999999998865 666678999999999999999999999999999999877763
Q ss_pred ---ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 283 ---SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 283 ---~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
++.++|++|.+++ .||||||||+|.+.+.+++.++++. .+.+.+|+||.+|||+.......++||++
T Consensus 746 VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG--------VMDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 746 VGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG--------VMDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccc--------cHHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 7899999999886 7999999999999998888776654 78899999999999998756678999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHH-HHHHHHHHcCCCCCCcHHHHHHHhhcC--CCCHHHHHHHHHcCCCHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCG-FDTLAANYLGITDHPLIYEIKEIMQNV--RVTPADVGEQLLKNEDPEIA 434 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~-r~~l~~~~l~~~~~~l~~~i~~l~~~~--~~tpa~i~~~l~~~~~~~~a 434 (455)
||+|+.|||||+||||||+-++++.+...+ +..+++..-..-..+-..++.+++... .+|+||+-.+|-. ..-.|
T Consensus 818 TNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSd--A~l~A 895 (953)
T KOG0736|consen 818 TNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSD--AMLAA 895 (953)
T ss_pred CCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHH--HHHHH
Confidence 999999999999999999999999887644 445555432222122222344444432 6999999888543 44455
Q ss_pred HHHHHHHHHHH
Q 012846 435 LKGLLEFLNAK 445 (455)
Q Consensus 435 l~~l~~~l~~~ 445 (455)
+++-+.-++..
T Consensus 896 ikR~i~~ie~g 906 (953)
T KOG0736|consen 896 IKRTIHDIESG 906 (953)
T ss_pred HHHHHHHhhhc
Confidence 55555555544
No 8
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-34 Score=305.15 Aligned_cols=213 Identities=26% Similarity=0.353 Sum_probs=180.2
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-- 282 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~-- 282 (455)
+.+.+|+|++|.++.|++|.+.+ .|+++|+.|.++|...|+|+||+||||||||+||+|+|.+.++||+.++.+++.
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 34478999999999999998876 599999999999999999999999999999999999999999999999999874
Q ss_pred ----ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ----SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ----~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
..+.++.+|..+. .||||||||||++...+........ . .+...++++||..|||+... .++|+++
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~--~----~e~e~tlnQll~emDgf~~~--~~vi~~a 455 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGG--Q----DEREQTLNQLLVEMDGFETS--KGVIVLA 455 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCC--C----hHHHHHHHHHHHHhcCCcCC--CcEEEEe
Confidence 4688999998775 7999999999999875531001110 0 16678999999999999776 5699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC-cHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP-LIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~-l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
+||+++.||+||+||||||++|+++.|+..+|..|++.++...... ...++..+.... ++|+|||+.+|.
T Consensus 456 ~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 456 ATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCN 527 (774)
T ss_pred ccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhh
Confidence 9999999999999999999999999999999999999999876443 334455554433 699999999775
No 9
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-35 Score=275.11 Aligned_cols=216 Identities=24% Similarity=0.306 Sum_probs=178.2
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~ 282 (455)
...+..+|.++.|.+.+.++|.+.++.++.+|++|...|+.+|+|++|||+||||||.||+|+||.....|+.+-.+++.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999988777763
Q ss_pred -----ChHHH-HHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEE
Q 012846 283 -----SNSEL-RRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERII 354 (455)
Q Consensus 283 -----~~~~L-~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ii 354 (455)
+...| +++|.-+ ..|||+||||||++..++-.....+. ++.++++-+|||.+||+.+. +.+-|
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~Sgge-------rEiQrtmLELLNQldGFdsr--gDvKv 327 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE-------REIQRTMLELLNQLDGFDSR--GDVKV 327 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccH-------HHHHHHHHHHHHhccCcccc--CCeEE
Confidence 34444 5555444 37999999999999864322222111 16788899999999999775 56999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhh-cCCCCHHHHHHHHHc
Q 012846 355 VFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQ-NVRVTPADVGEQLLK 427 (455)
Q Consensus 355 I~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~-~~~~tpa~i~~~l~~ 427 (455)
|++||+.+.|||||+||||+|+.|+||.|+...++.|+..+-......-...++.++. .-.+|+|||..+|..
T Consensus 328 imATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictE 401 (440)
T KOG0726|consen 328 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTE 401 (440)
T ss_pred EEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999987665543333445666664 446999999998753
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=262.61 Aligned_cols=211 Identities=25% Similarity=0.347 Sum_probs=176.6
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC-----
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH----- 282 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~----- 282 (455)
.++.++.|.+-+|++|.+.++.++.+.+.|+.+|+.+|||+|||||||||||+|++|+|++....|+.+..+++.
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -ChHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecC
Q 012846 283 -SNSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTN 359 (455)
Q Consensus 283 -~~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN 359 (455)
....++.+|.-+ ..|+||||||||++..++=..+.+.. ++.++.+-+|||.|||+... .++-+|++||
T Consensus 232 egprmvrdvfrlakenapsiifideidaiatkrfdaqtgad-------revqril~ellnqmdgfdq~--~nvkvimatn 302 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGAD-------REVQRILIELLNQMDGFDQT--TNVKVIMATN 302 (408)
T ss_pred cCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccccccc-------HHHHHHHHHHHHhccCcCcc--cceEEEEecC
Confidence 234556666444 47999999999999763322222111 16788999999999999654 5699999999
Q ss_pred CCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhh-cCCCCHHHHHHHHHc
Q 012846 360 HKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQ-NVRVTPADVGEQLLK 427 (455)
Q Consensus 360 ~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~-~~~~tpa~i~~~l~~ 427 (455)
+.+.|||||+||||+|+.|+||+|+.-+++-++.......+.....+++.++. .-.+|.|+|..+|..
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqe 371 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQE 371 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHH
Confidence 99999999999999999999999999999888887766655444556777764 346999999988753
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=261.27 Aligned_cols=214 Identities=25% Similarity=0.306 Sum_probs=175.0
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC-
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH- 282 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~- 282 (455)
.-+..+++-+.|.+.+.++|.+-++.+.++|+.|..+|++-|+|+|||||||||||.||+|+|.+..+.|+.++.+++.
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 3345678999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred ----C-hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEE
Q 012846 283 ----S-NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIV 355 (455)
Q Consensus 283 ----~-~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI 355 (455)
. ..-++++|.-+. .|+|||+||||.+...+...+.++. ++.++++-+|||.+||+... .++-+|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggd-------sevqrtmlellnqldgfeat--knikvi 290 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGD-------SEVQRTMLELLNQLDGFEAT--KNIKVI 290 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCcc-------HHHHHHHHHHHHhccccccc--cceEEE
Confidence 2 244566665543 7999999999999864433222211 16789999999999999775 569999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 356 FTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 356 ~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
++||+.+-|||||+||||+|+.|+||.|+.++|.+|++.+-...+.--.-.+..+++.. +.|+|++...|.
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhh
Confidence 99999999999999999999999999999999999999765444322222334444332 478888888775
No 12
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.1e-32 Score=280.22 Aligned_cols=232 Identities=23% Similarity=0.298 Sum_probs=184.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-- 282 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~-- 282 (455)
.+..+|++|+|.+.+|++|.+.+..++.+++.|..+|.++++|+|||||||||||++++++|+.++.+++.+..+.+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999876653
Q ss_pred ----ChHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ----SNSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ----~~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
+...++.+|..+ ..|+||||||||.++..+........ ...+..+.+||+.+|++... .+++||+
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d-------~~~~r~l~~LL~~ld~~~~~--~~v~VI~ 289 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGAD-------REVQRILLELLNQMDGFDQT--TNVKVIM 289 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCcc-------HHHHHHHHHHHHHhhccCCC--CCEEEEE
Confidence 235567777554 47999999999999764321111100 13457789999999998654 4589999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHHc-------C
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLLK-------N 428 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~-------~ 428 (455)
|||+++.||||++||||||..|++++|+.++|..|++.++.........++..++... ++|+|||..+|.. .
T Consensus 290 aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 290 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred ecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998765433334555665543 6999999988752 2
Q ss_pred CCHHHHHHHHHHHHHHH
Q 012846 429 EDPEIALKGLLEFLNAK 445 (455)
Q Consensus 429 ~~~~~al~~l~~~l~~~ 445 (455)
+......+.+.+++++.
T Consensus 370 ~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 370 NRYVILPKDFEKGYKTV 386 (398)
T ss_pred CCCccCHHHHHHHHHHH
Confidence 33344455555555543
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-33 Score=270.53 Aligned_cols=209 Identities=21% Similarity=0.328 Sum_probs=174.3
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC--
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-- 283 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~-- 283 (455)
+...|++|+|.++.|+-|.+.+..++--|++|+.+-.||+ |+|++||||||||+||+|+|.+++..||.|+.+.+.+
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWk-gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccc-eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence 3468999999999999999999999999999999989985 9999999999999999999999999999999988853
Q ss_pred ---hHHHHHHHHhcC---CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCC--ceEEE
Q 012846 284 ---NSELRRVLLSTG---NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGD--ERIIV 355 (455)
Q Consensus 284 ---~~~L~~ll~~~~---~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~--~~iiI 355 (455)
.++|.++|+.++ .|++|||||||.+...++....+. .+++.-++||..|||+...... -++|+
T Consensus 286 RGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHE---------aSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 286 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHE---------ASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred ccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchh---------HHHHHHHHHHHHhhccccccccceeEEEE
Confidence 467888887765 799999999999998655543332 5677789999999998554221 26777
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 356 FTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 356 ~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
++||.||+||.||+| ||...|++|.|+.++|..|++..|........-.++.+.+.. ++|++||..+|.
T Consensus 357 AATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 357 AATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred eccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHH
Confidence 899999999999999 999999999999999999999988765333333344444433 489999988764
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.3e-32 Score=253.45 Aligned_cols=230 Identities=20% Similarity=0.282 Sum_probs=179.6
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--- 282 (455)
+..++++|.|.+.+.+++++.+..++.+++.|..+|+.+|+|+|+|||||||||.+|+|.|...+..|..+-..++.
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf 245 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 245 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhh
Confidence 33479999999999999999999999999999999999999999999999999999999999999888877655542
Q ss_pred --ChHH-HHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 283 --SNSE-LRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 283 --~~~~-L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
+... ++..|.-+ ..|+||||||+|++..++-.....+ + ++.++++-+|||.+||+.+. +.+-||++
T Consensus 246 IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~G--D-----REVQRTMLELLNQLDGFss~--~~vKviAA 316 (424)
T KOG0652|consen 246 IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAG--D-----REVQRTMLELLNQLDGFSSD--DRVKVIAA 316 (424)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccc--c-----HHHHHHHHHHHHhhcCCCCc--cceEEEee
Confidence 3333 44555433 4799999999999976332221111 1 16788999999999999665 67999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH-------cCC
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL-------KNE 429 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~-------~~~ 429 (455)
||+.+-|||||+|.||+|+.|+||.|+.+.|..|++.+-..........+++|.... ++.+|+....|. +++
T Consensus 317 TNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~ 396 (424)
T KOG0652|consen 317 TNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG 396 (424)
T ss_pred cccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc
Confidence 999999999999999999999999999999999999876655444444455565543 488888766654 344
Q ss_pred CHHHHHHHHHHHHHH
Q 012846 430 DPEIALKGLLEFLNA 444 (455)
Q Consensus 430 ~~~~al~~l~~~l~~ 444 (455)
..+...+.+.+.+.+
T Consensus 397 atev~heDfmegI~e 411 (424)
T KOG0652|consen 397 ATEVTHEDFMEGILE 411 (424)
T ss_pred cccccHHHHHHHHHH
Confidence 444444555544433
No 15
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.8e-32 Score=283.47 Aligned_cols=232 Identities=25% Similarity=0.322 Sum_probs=192.1
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--- 282 (455)
...+|.+++|.++.|+++.+.+ .|++.+..|..+|...|+|+||+||||||||+||+|+|.+.+.|++.++.++..
T Consensus 145 ~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 3468999999999999998866 599999999999999999999999999999999999999999999999999874
Q ss_pred ---ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 283 ---SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 283 ---~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
..+.+|.+|.++. .||||||||||++...+......+. .....|+++||.+|||+..+ +.+||+++
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gggn-------derEQTLNQlLvEmDGF~~~--~gviviaa 294 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGN-------DEREQTLNQLLVEMDGFGGN--EGVIVIAA 294 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCc-------hHHHHHHHHHHhhhccCCCC--CceEEEec
Confidence 5689999999886 5999999999999865544322111 15668999999999999754 56999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH----------
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL---------- 426 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~---------- 426 (455)
||+|+-|||||+||||||++|.++.|+...|++|++.+.......-..++..++... +++.|++..++-
T Consensus 295 TNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n 374 (596)
T COG0465 295 TNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN 374 (596)
T ss_pred CCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999777665444333444444433 589999888762
Q ss_pred ----cCCCHHHHHHHHHHHHHHHhh
Q 012846 427 ----KNEDPEIALKGLLEFLNAKLI 447 (455)
Q Consensus 427 ----~~~~~~~al~~l~~~l~~~~~ 447 (455)
...+.+.|.+.++.-.+++..
T Consensus 375 ~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 375 KKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred CeeEeccchHHHHHHHhcCcCcCCc
Confidence 135788888888777665554
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=5.2e-31 Score=270.60 Aligned_cols=235 Identities=24% Similarity=0.316 Sum_probs=186.6
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-- 282 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~-- 282 (455)
.+..+|++|+|.++++++|.+.+..++.+++.|+.+|..+++|+|||||||||||++|+++|+.++.+++.++++.+.
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 344689999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ----ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ----SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ----~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
+...++.+|..+. .||||||||||.++..+........ ...+.++..||+.+|++... .+++||+
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~-------~~~~~~l~~lL~~ld~~~~~--~~v~VI~ 275 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGD-------REVQRTLMQLLAEMDGFDPR--GNVKIIA 275 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCcc-------HHHHHHHHHHHHhccccCCC--CCEEEEE
Confidence 2355666776543 6899999999999864322211110 03456788899999987543 4689999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHHc-------C
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLLK-------N 428 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~-------~ 428 (455)
|||+++.+|++++||||||..|++|.|+.++|.+|++.++..........+..++... +++++|+..+|.. .
T Consensus 276 aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 276 ATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred ecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998765433223345555433 6999999988752 2
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q 012846 429 EDPEIALKGLLEFLNAKLIE 448 (455)
Q Consensus 429 ~~~~~al~~l~~~l~~~~~~ 448 (455)
+......+.+.++++..+..
T Consensus 356 ~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 356 DRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 33345666777777665543
No 17
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=8e-31 Score=273.84 Aligned_cols=183 Identities=24% Similarity=0.376 Sum_probs=151.6
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc----------eE
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD----------IY 274 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~----------~~ 274 (455)
.++.+|++|+|.++++++|.+.+..++.+++.|+..|.++++|+|||||||||||++++++|++++.+ ++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 34568999999999999999999999999999999999999999999999999999999999998765 33
Q ss_pred EeeccccC------ChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhh
Q 012846 275 DLELSAVH------SNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD 342 (455)
Q Consensus 275 ~l~~~~~~------~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD 342 (455)
.+..+++. ++..++.+|..+. .|+||||||+|+++..++...... ..+..+++||+.||
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d---------~e~~il~~LL~~LD 326 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSD---------VETTVVPQLLSELD 326 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccch---------HHHHHHHHHHHHhc
Confidence 33333332 2345666665442 589999999999986432211110 33567899999999
Q ss_pred ccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 343 GLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 343 g~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
|+.+. ++++||+|||+++.|||||+||||||.+|+|++|+.+++++|++.|+..
T Consensus 327 gl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 99764 4699999999999999999999999999999999999999999999865
No 18
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=8.6e-31 Score=270.11 Aligned_cols=233 Identities=21% Similarity=0.261 Sum_probs=183.9
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC-
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH- 282 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~- 282 (455)
..++.+|++|+|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|+.++.+++.+..+++.
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 3455789999999999999999999999999999999999999999999999999999999999999999999877763
Q ss_pred -----ChHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEE
Q 012846 283 -----SNSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIV 355 (455)
Q Consensus 283 -----~~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI 355 (455)
....++.+|..+ ..||||||||||.++..+........ ...+.++..||+.+|++... .++.||
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~-------~e~qr~ll~LL~~Ldg~~~~--~~V~VI 326 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGE-------KEIQRTMLELLNQLDGFDSR--GDVKVI 326 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCccc-------HHHHHHHHHHHHHHhhhccc--CCeEEE
Confidence 234466666554 37899999999999863322111110 03456788999999998543 458999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHHc-------
Q 012846 356 FTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQN-VRVTPADVGEQLLK------- 427 (455)
Q Consensus 356 ~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~~------- 427 (455)
+|||+++.||++++||||||.+|+|+.|+.++|.+|++.++.........+++.++.. .++|+||+..+|..
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr 406 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876543333345566543 36999999988752
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 012846 428 NEDPEIALKGLLEFLNAK 445 (455)
Q Consensus 428 ~~~~~~al~~l~~~l~~~ 445 (455)
.+......+.+.+++++.
T Consensus 407 ~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 407 ERRMKVTQADFRKAKEKV 424 (438)
T ss_pred hcCCccCHHHHHHHHHHH
Confidence 233344555555555554
No 19
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.6e-31 Score=247.93 Aligned_cols=215 Identities=22% Similarity=0.255 Sum_probs=177.1
Q ss_pred eecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 202 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
++-.+..++.++.|-.++.+.|++-++.++.+++.|..+|+.+|+|+|||||||||||.+|+|+||..+.-|+.+-.+++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 33445568999999999999999999999999999999999999999999999999999999999999999999987776
Q ss_pred C-----C-hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceE
Q 012846 282 H-----S-NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERI 353 (455)
Q Consensus 282 ~-----~-~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~i 353 (455)
. . ...++++|.-+. .-|||||||||++...+=..+..+. ++.++++-+|+|.+||+... +++-
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggd-------nevqrtmleli~qldgfdpr--gnik 318 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGD-------NEVQRTMLELINQLDGFDPR--GNIK 318 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCc-------HHHHHHHHHHHHhccCCCCC--CCeE
Confidence 4 2 244566665543 5699999999999763322111111 16788999999999999554 6799
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC---CCcHHHHHHHhhcCCCCHHHHHHHHHc
Q 012846 354 IVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD---HPLIYEIKEIMQNVRVTPADVGEQLLK 427 (455)
Q Consensus 354 iI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~---~~l~~~i~~l~~~~~~tpa~i~~~l~~ 427 (455)
|+++||+|+.|||||+||||+|+.++|..|+.+.|..|++.+-.... .--++-+..|+.+ -|+|++...|..
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpn--stgaeirsvcte 393 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPN--STGAEIRSVCTE 393 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCC--CcchHHHHHHHH
Confidence 99999999999999999999999999999999999999987655433 2335666777776 789999998864
No 20
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.7e-31 Score=271.38 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=186.5
Q ss_pred ceeeeecCCC--CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 198 SWHWITFNHP--ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 198 ~~~~~~~~~~--~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
..+.+.+..+ ..|++|+|..++|+.+.+.++.+.+++..|...+.+.+.|+|||||||||||.||.|+|...+..++.
T Consensus 652 aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis 731 (952)
T KOG0735|consen 652 ALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS 731 (952)
T ss_pred HhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE
Confidence 4556665544 37999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccC------ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC
Q 012846 276 LELSAVH------SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS 347 (455)
Q Consensus 276 l~~~~~~------~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~ 347 (455)
+...++- ++..+|.+|.++. +||||||||+|.+.++++....+ ...+.+++||..|||...-
T Consensus 732 vKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG----------VTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 732 VKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG----------VTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred ecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC----------chHHHHHHHHHhhcccccc
Confidence 9877763 6789999998875 89999999999999855443221 5667899999999998764
Q ss_pred CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 348 CGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 348 ~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
+++.|+++|.+|+.|||||+||||+|.+++-|.|++.+|.+|++..-.....+...+++-++..+ ++|+||++.+|.
T Consensus 802 --~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~ 879 (952)
T KOG0735|consen 802 --DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLY 879 (952)
T ss_pred --ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHH
Confidence 45999999999999999999999999999999999999999999766554444455666666543 699999999875
Q ss_pred c
Q 012846 427 K 427 (455)
Q Consensus 427 ~ 427 (455)
.
T Consensus 880 ~ 880 (952)
T KOG0735|consen 880 N 880 (952)
T ss_pred H
Confidence 4
No 21
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.5e-30 Score=275.53 Aligned_cols=231 Identities=24% Similarity=0.354 Sum_probs=183.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-- 282 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~-- 282 (455)
.+..+|++|+|.+++|+++.+.+. ++..++.|...|...++|+|||||||||||++++++|++++.+++.++++++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 345689999999999999987655 68899999999999999999999999999999999999999999999887653
Q ss_pred ----ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ----SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ----~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
+...++.+|..+. .||||||||||.+...+........ .....++++||+.||++... ++++||+
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~-------~~~~~~~~~lL~~~d~~~~~--~~v~vI~ 198 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGN-------DEREQTLNQLLVEMDGFGTN--TGVIVIA 198 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCcc-------HHHHHHHHHHHhhhccccCC--CCeEEEE
Confidence 3567888887764 6899999999999864332111100 03457789999999998654 4599999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHHc-------C
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLLK-------N 428 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~-------~ 428 (455)
|||+|+.|||+++||||||.+|+++.|+.++|.+|++.++.........++..++... ++|++|+..++-. .
T Consensus 199 aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~ 278 (495)
T TIGR01241 199 ATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK 278 (495)
T ss_pred ecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998766444344566666554 5999999887642 2
Q ss_pred CCHHHHHHHHHHHHHHH
Q 012846 429 EDPEIALKGLLEFLNAK 445 (455)
Q Consensus 429 ~~~~~al~~l~~~l~~~ 445 (455)
+......+.+.+++++.
T Consensus 279 ~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 279 NKTEITMNDIEEAIDRV 295 (495)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 22334445555555543
No 22
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.4e-30 Score=272.13 Aligned_cols=204 Identities=21% Similarity=0.293 Sum_probs=164.6
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC----
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH---- 282 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~---- 282 (455)
..+|++|+|.+.+|+.+.+....|.. .....|.+.++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~---~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSK---QASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhH---HHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 45799999999999999887665533 34567899999999999999999999999999999999999987653
Q ss_pred --ChHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec
Q 012846 283 --SNSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358 (455)
Q Consensus 283 --~~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT 358 (455)
++..++++|..+ ..||||||||||.++.......+.+ .....++.||..|+.. ...++||+||
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~---------~~~rvl~~lL~~l~~~----~~~V~vIaTT 367 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSG---------TTNRVLATFITWLSEK----KSPVFVVATA 367 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCch---------HHHHHHHHHHHHHhcC----CCceEEEEec
Confidence 457788888754 4899999999999876322211111 4567788899988753 2458999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC--cHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 359 NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP--LIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 359 N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~--l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|+++.|||+++||||||..|+++.|+.++|.+|++.++...... ...++..++..+ ++|+|||...+.
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999765322 133466666544 699999988764
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=3.5e-30 Score=284.45 Aligned_cols=209 Identities=22% Similarity=0.310 Sum_probs=177.2
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC----
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH---- 282 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~---- 282 (455)
..+|++++|.+++|+.|.+.+..++..++.|...|..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV 528 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999987753
Q ss_pred --ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec
Q 012846 283 --SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358 (455)
Q Consensus 283 --~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT 358 (455)
++..++++|..+. .||||||||||.+.+.++...... .....+++||..|||+... .+++||+||
T Consensus 529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~---------~~~~~~~~lL~~ldg~~~~--~~v~vI~aT 597 (733)
T TIGR01243 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTS---------VTDRIVNQLLTEMDGIQEL--SNVVVIAAT 597 (733)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCcc---------HHHHHHHHHHHHhhcccCC--CCEEEEEeC
Confidence 4567889887764 789999999999987443211111 3456789999999998654 569999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 359 NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 359 N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|+|+.||||++||||||.+|++|+|+.++|.+||+.++.........++..++... ++|+||+..+|.
T Consensus 598 n~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 598 NRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred CChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999888765444344456666544 599999988763
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=242.85 Aligned_cols=205 Identities=19% Similarity=0.299 Sum_probs=171.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--- 282 (455)
...+||+++|+++.|+... .+..|+.+|+.|..+ -|+++|+|||||||||++|+|+|++++.|++.+..+++.
T Consensus 116 ~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHHH-HHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 4568999999999998874 556788999887654 478999999999999999999999999999999988874
Q ss_pred ---ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 283 ---SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 283 ---~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
....+++++..+. .|||+||||+|++.- +|..++-.+ +....++.||..|||+.+. ++++.|++
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQelRG-------DVsEiVNALLTelDgi~en--eGVvtIaa 260 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQELRG-------DVSEIVNALLTELDGIKEN--EGVVTIAA 260 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHHhcc-------cHHHHHHHHHHhccCcccC--CceEEEee
Confidence 2367888887775 799999999999875 333222111 5667889999999999765 66999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHHc
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLLK 427 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~ 427 (455)
||+|+.||||+.. ||...|+|..|+.++|..|++.|......+....++.+...+ ++|+.||.+-.++
T Consensus 261 TN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 261 TNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred cCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence 9999999999999 999999999999999999999999888777776777776644 6999999886653
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-29 Score=263.54 Aligned_cols=227 Identities=26% Similarity=0.383 Sum_probs=186.9
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--- 282 (455)
...+|++++|.+..|+.+.+.+..++..++.|...|...++|+|||||||||||+||+|+|++++.+|+.++.+++.
T Consensus 237 ~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~ 316 (494)
T COG0464 237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKW 316 (494)
T ss_pred CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred ---ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 283 ---SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 283 ---~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
++..++++|..+. .||||||||+|.+.+.++..... ...+.+++||..|||+... ++++||+|
T Consensus 317 vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~----------~~~r~~~~lL~~~d~~e~~--~~v~vi~a 384 (494)
T COG0464 317 VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG----------SGRRVVGQLLTELDGIEKA--EGVLVIAA 384 (494)
T ss_pred cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch----------HHHHHHHHHHHHhcCCCcc--CceEEEec
Confidence 4688999998875 79999999999998744332211 2257899999999999665 55999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc--HHHHHHHhh-cCCCCHHHHHHHHHc-------
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL--IYEIKEIMQ-NVRVTPADVGEQLLK------- 427 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l--~~~i~~l~~-~~~~tpa~i~~~l~~------- 427 (455)
||+|+.+|+|++||||||..|++|.|+.++|..+++.++......+ ...+..+++ ..++|++||..++..
T Consensus 385 TN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~ 464 (494)
T COG0464 385 TNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALR 464 (494)
T ss_pred CCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998654432 233444444 234999999988753
Q ss_pred CC-CHHHHHHHHHHHHHH
Q 012846 428 NE-DPEIALKGLLEFLNA 444 (455)
Q Consensus 428 ~~-~~~~al~~l~~~l~~ 444 (455)
.. ..+..++.+.+++++
T Consensus 465 ~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 465 EARRREVTLDDFLDALKK 482 (494)
T ss_pred HhccCCccHHHHHHHHHh
Confidence 11 234555555555554
No 26
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=5.3e-29 Score=267.91 Aligned_cols=212 Identities=25% Similarity=0.320 Sum_probs=174.3
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-- 282 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~-- 282 (455)
....+|++++|.++.|+++.+. ..+++.++.|..+|...++|+||+||||||||++|+++|++++.+++.++++++.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~ei-v~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEV-VSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHH-HHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3456899999999999998765 4678899999999999999999999999999999999999999999999988753
Q ss_pred ----ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ----SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ----~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
....++.+|..+. .||||||||||++...++....... .....++++||..||++... .+++||+
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~-------~e~~~~L~~LL~~~dg~~~~--~~ViVIa 326 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGN-------DEREQTLNQLLTEMDGFKGN--KGVIVIA 326 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCc-------HHHHHHHHHHHhhhccccCC--CCeeEEE
Confidence 3456788887764 6899999999999763322111110 14567899999999998654 4599999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|||+++.||+||+||||||.+|+++.|+.++|..|++.++..........+..++... +++++|+..++-
T Consensus 327 aTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 327 ATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred ecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999775444445566666654 589999987764
No 27
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.9e-30 Score=242.57 Aligned_cols=201 Identities=24% Similarity=0.355 Sum_probs=168.6
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC----
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS---- 283 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~---- 283 (455)
..|++|+|.+..|+.|.+.+..+++.|++|...-+|| +|||||||||||||.||+|+|.+.+..|+.++.+++.+
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 4689999999999999999999999999998877777 69999999999999999999999999999999999852
Q ss_pred -hHH-HHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecC
Q 012846 284 -NSE-LRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTN 359 (455)
Q Consensus 284 -~~~-L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN 359 (455)
.+. ++++|.-+ ..|+||||||||.+... |..+.+. .++++-.+||-.|.|+-.. .++++|+++||
T Consensus 209 ESEkLVknLFemARe~kPSIIFiDEiDslcg~--r~enEse--------asRRIKTEfLVQMqGVG~d-~~gvLVLgATN 277 (439)
T KOG0739|consen 209 ESEKLVKNLFEMARENKPSIIFIDEIDSLCGS--RSENESE--------ASRRIKTEFLVQMQGVGND-NDGVLVLGATN 277 (439)
T ss_pred cHHHHHHHHHHHHHhcCCcEEEeehhhhhccC--CCCCchH--------HHHHHHHHHHHhhhccccC-CCceEEEecCC
Confidence 244 44555443 37999999999988763 2222111 4667778999999998553 45799999999
Q ss_pred CCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH-HHHHHHhhcC-CCCHHHHH
Q 012846 360 HKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI-YEIKEIMQNV-RVTPADVG 422 (455)
Q Consensus 360 ~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa~i~ 422 (455)
-|+.||.|+.| ||+..|++|.|...+|..+++..++...|.+. .++..|.... ++|++||.
T Consensus 278 iPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis 340 (439)
T KOG0739|consen 278 IPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS 340 (439)
T ss_pred CchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE
Confidence 99999999999 99999999999999999999999999988875 4677777654 58888864
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-29 Score=238.02 Aligned_cols=209 Identities=24% Similarity=0.308 Sum_probs=172.2
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC----
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS---- 283 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~---- 283 (455)
.+|+.+.|.-.+..++++-++.++.+++.+.++|+.+|.|++||||||||||.+|+++|..++.+++.+..+.+.+
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999998888753
Q ss_pred --hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecC
Q 012846 284 --NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTN 359 (455)
Q Consensus 284 --~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN 359 (455)
..-+++.|..+. .|||||+||||+....+....... + ...+.||-.|+|.|||+... ..+-+|+|||
T Consensus 209 EsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~--d-----reiqrTLMeLlnqmdgfd~l--~rVk~ImatN 279 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSS--D-----REIQRTLMELLNQMDGFDTL--HRVKTIMATN 279 (388)
T ss_pred cHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccch--h-----HHHHHHHHHHHHhhccchhc--ccccEEEecC
Confidence 345677776665 699999999999987442222111 1 15788999999999998665 4588999999
Q ss_pred CCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC---CCCcHHHHHHHhhcCCCCHHHHHHHHHc
Q 012846 360 HKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT---DHPLIYEIKEIMQNVRVTPADVGEQLLK 427 (455)
Q Consensus 360 ~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~---~~~l~~~i~~l~~~~~~tpa~i~~~l~~ 427 (455)
+|+.|||||+||||+|+.+++|.|+...|..+++..-... +.-.++.+..+.+. +..|++...|..
T Consensus 280 rpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~--f~gad~rn~~tE 348 (388)
T KOG0651|consen 280 RPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDG--FNGADLRNVCTE 348 (388)
T ss_pred CccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhc--cChHHHhhhccc
Confidence 9999999999999999999999999999998777543321 22235666666666 777887776653
No 29
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=4.2e-28 Score=239.91 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=143.5
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC----
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH---- 282 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~---- 282 (455)
..+|+++.|.=.+-....+.+...+ .+.+....|..+|+|++||||||||||++|+|+|++++.+++.++.+++.
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 3456666443333333333222221 23344456889999999999999999999999999999999999998875
Q ss_pred --ChHHHHHHHHhcC-------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc--------c
Q 012846 283 --SNSELRRVLLSTG-------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL--------W 345 (455)
Q Consensus 283 --~~~~L~~ll~~~~-------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~--------~ 345 (455)
++..++++|..+. +||||||||||++++.++. .... ...+....+||+.+|+. |
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~--~~~t-------v~~qiV~~tLLnl~D~p~~v~l~G~w 260 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT--TQYT-------VNNQMVNGTLMNIADNPTNVSLGGDW 260 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC--CCcc-------hHHHHHHHHHHHHhcCCccccccccc
Confidence 4678999997653 6999999999999874431 1110 02344458999998863 3
Q ss_pred --cCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC
Q 012846 346 --SSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV 414 (455)
Q Consensus 346 --~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~ 414 (455)
......++||+|||+|+.|||||+||||||..+ ..|+.++|..|++.++...+.+ ..++..++...
T Consensus 261 ~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f 328 (413)
T PLN00020 261 REKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTF 328 (413)
T ss_pred cccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcC
Confidence 112346899999999999999999999999965 5899999999999998876444 46777777653
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=5.8e-28 Score=246.53 Aligned_cols=213 Identities=25% Similarity=0.300 Sum_probs=169.3
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC-
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS- 283 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~- 283 (455)
.+..+|++|+|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|+.++.+++.+..+.+..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 4456899999999999999999999999999999999999999999999999999999999999999999887665431
Q ss_pred -----hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 284 -----NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 284 -----~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
...++.+|..+ ..|+||||||+|.+...+........ ...+.++..+++.+|++... +++.||+
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~-------~~~~~~l~~ll~~ld~~~~~--~~v~vI~ 266 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGD-------REVQRTLMQLLAELDGFDPR--GNVKVIA 266 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCcc-------HHHHHHHHHHHHHhhCCCCC--CCEEEEE
Confidence 23455666544 36899999999998753322111110 03456788899999987443 4589999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|||+++.+|++++||||||..|+++.|+.++|.+|++.++..........+..+.... +++++|+..++.
T Consensus 267 ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 267 ATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred ecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988654332222344444433 599999988765
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-28 Score=240.54 Aligned_cols=221 Identities=22% Similarity=0.304 Sum_probs=178.6
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhC-CCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC---
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS--- 283 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g-~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~--- 283 (455)
.+|++|.|.+.+|+.+.+.+..+++.+++|..-+ ..+++|+|||||||||||++|+|+|++.+.+++.+..+.+.+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 4799999999999999999999999999997332 235689999999999999999999999999999999998864
Q ss_pred --hHHHHHHHHh-cC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec
Q 012846 284 --NSELRRVLLS-TG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358 (455)
Q Consensus 284 --~~~L~~ll~~-~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT 358 (455)
...+.+.++. +. +||||||||||.++..+ +..++. .....-++|....||+.+..+..++|+++|
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHE---------a~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHE---------ATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHH---------HHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 2344444443 33 79999999999998755 222211 344556889999999988877778888999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHHcCCCHHHHHHH
Q 012846 359 NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLLKNEDPEIALKG 437 (455)
Q Consensus 359 N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~~~~~~~al~~ 437 (455)
|+|.+||.|++| ||...++++.|+.++|.+|++-+|..+...-.-++.++.+.+ ++|+.|+.+.|. .+|+..
T Consensus 239 NRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~-----~Aa~~~ 311 (386)
T KOG0737|consen 239 NRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCR-----LAALRP 311 (386)
T ss_pred CCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHH-----HHhHhH
Confidence 999999999999 999999999999999999999999987665444555555543 599999999855 456666
Q ss_pred HHHHHHHH
Q 012846 438 LLEFLNAK 445 (455)
Q Consensus 438 l~~~l~~~ 445 (455)
+.+.++.+
T Consensus 312 ire~~~~~ 319 (386)
T KOG0737|consen 312 IRELLVSE 319 (386)
T ss_pred HHHHHHhc
Confidence 66666554
No 32
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.95 E-value=2.8e-28 Score=201.81 Aligned_cols=97 Identities=39% Similarity=0.759 Sum_probs=93.5
Q ss_pred hCcHHHHHHHHHHHHHhhc-cCCCceEEEEecCCCCcchHHHHHHHHHhccCCCCCCCceEeecCCCCCceEEeccCCCe
Q 012846 28 LVPHELKLFVLMNIRGLFE-SFSSEITLIIDQFDGLASNQIYRAADIYLGNKISPSTKMFRVSMPEKENKMSISMAKNQE 106 (455)
Q Consensus 28 ~~P~~l~~~~~~~~~~~~~-~~~~~~ti~i~e~~~~~~n~~y~a~~~YL~t~~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 106 (455)
|+|++||+++.++++++++ +++||+||+|+|++|+.+|++|+||++||+++++++++||++++++++++++++|++||+
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e~ 80 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGEE 80 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCCE
Confidence 6899999999999988876 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeeEEEEEEEee
Q 012846 107 IVDHFDGVKLKWKQVTRQ 124 (455)
Q Consensus 107 ~~d~f~g~~~~w~~~~~~ 124 (455)
|+|+|+||++||.+++++
T Consensus 81 V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 81 VVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEECCEEEEEEEEccC
Confidence 999999999999998863
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=3.9e-27 Score=255.66 Aligned_cols=210 Identities=23% Similarity=0.341 Sum_probs=171.0
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC----
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH---- 282 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~---- 282 (455)
..+|+++.|.+..++++.+.+. ++..++.|..+|...++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 4579999999999999877665 56777888888888899999999999999999999999999999999987653
Q ss_pred --ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec
Q 012846 283 --SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358 (455)
Q Consensus 283 --~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT 358 (455)
....++.+|..+. .||||||||||.+...+........ .....++++||..||++... +.+++|+||
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~-------~~~~~~ln~lL~~mdg~~~~--~~vivIaaT 297 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH-------DEREQTLNQMLVEMDGFEGN--EGIIVIAAT 297 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCc-------hHHHHHHHHHHHhhhcccCC--CCeeEEEec
Confidence 3467788886654 7899999999999764332111110 14457899999999998665 459999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 359 NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 359 N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|+|+.||||++||||||.+|+++.|+.++|.+|++.++.........++..+.... ++|+||+..++.
T Consensus 298 N~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 298 NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred CChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999775443333455555543 699999998874
No 34
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=2.2e-27 Score=268.42 Aligned_cols=177 Identities=16% Similarity=0.135 Sum_probs=138.3
Q ss_pred chhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCCh----------------------------
Q 012846 233 RKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN---------------------------- 284 (455)
Q Consensus 233 ~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~---------------------------- 284 (455)
.+..+.++|..+++|+||+||||||||+||+|+|.++++|++.++++++...
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 4566778899999999999999999999999999999999999987765410
Q ss_pred ---------------------HHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhh
Q 012846 285 ---------------------SELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341 (455)
Q Consensus 285 ---------------------~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 341 (455)
..++.+|..+. +||||+|||||++.... ....++++||+.|
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------------s~~ltL~qLLneL 1761 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------------SNYLSLGLLVNSL 1761 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------------cceehHHHHHHHh
Confidence 12566676553 79999999999986420 2335689999999
Q ss_pred hccccC-CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH---HHHHHHhhcC-CC
Q 012846 342 DGLWSS-CGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI---YEIKEIMQNV-RV 416 (455)
Q Consensus 342 Dg~~~~-~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~---~~i~~l~~~~-~~ 416 (455)
||.... ..+++|||+|||+|+.|||||+||||||.+|+++.|+..+|++++...+...+.++. .++..++..+ ++
T Consensus 1762 Dg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~Gf 1841 (2281)
T CHL00206 1762 SRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGS 1841 (2281)
T ss_pred ccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCC
Confidence 987432 235699999999999999999999999999999999999999888754432222221 2345555544 69
Q ss_pred CHHHHHHHH
Q 012846 417 TPADVGEQL 425 (455)
Q Consensus 417 tpa~i~~~l 425 (455)
|+||++.++
T Consensus 1842 SGADLanLv 1850 (2281)
T CHL00206 1842 NARDLVALT 1850 (2281)
T ss_pred CHHHHHHHH
Confidence 999998875
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1.9e-25 Score=246.83 Aligned_cols=208 Identities=24% Similarity=0.333 Sum_probs=170.2
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--- 282 (455)
+..+|++|+|.+++++.|.+.+..++.+++.|..+|..+++|+|||||||||||++++++|++++.+++.+++.++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred ---ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 283 ---SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 283 ---~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
+...++.+|..+. .|+||||||||.+...+.. .... .....++.|++.||++... ..++||++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~--~~~~--------~~~~~~~~Ll~~ld~l~~~--~~vivI~a 320 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREE--VTGE--------VEKRVVAQLLTLMDGLKGR--GRVIVIGA 320 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccC--Ccch--------HHHHHHHHHHHHhhccccC--CCEEEEee
Confidence 2356788887653 6899999999998763321 1110 3356788999999998654 45889999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQL 425 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 425 (455)
||+++.||+++.||||||..|+++.|+.++|.+|++.+...........+..+++.. +++++++..++
T Consensus 321 tn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~ 389 (733)
T TIGR01243 321 TNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389 (733)
T ss_pred cCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999877654332223344454433 58999887764
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.2e-25 Score=242.13 Aligned_cols=210 Identities=20% Similarity=0.283 Sum_probs=169.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC-----CceEEeecc
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN-----FDIYDLELS 279 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~-----~~~~~l~~~ 279 (455)
+....|++|+|.+..+.++.+.+-.++.+++.|...++.+|||+|||||||||||++|+|+|..+. ..+|.-...
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 344579999999999999999999999999999999999999999999999999999999998873 334433222
Q ss_pred cc------CChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCc
Q 012846 280 AV------HSNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDE 351 (455)
Q Consensus 280 ~~------~~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~ 351 (455)
+. ..+.+++-+|..+. +|+|||+||||-+.+.+...+.. .....++.||..|||+.+. +.
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEq----------ih~SIvSTLLaLmdGldsR--gq 406 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQ----------IHASIVSTLLALMDGLDSR--GQ 406 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHH----------hhhhHHHHHHHhccCCCCC--Cc
Confidence 22 24678888888775 79999999999998855432221 3445679999999999776 56
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHH-hhc-CCCCHHHHHHHHH
Q 012846 352 RIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEI-MQN-VRVTPADVGEQLL 426 (455)
Q Consensus 352 ~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l-~~~-~~~tpa~i~~~l~ 426 (455)
++||++||+|+.+||||.||||||..++||+|+-++|.+|+...-..-.+++...+... .+. .++-+||+..+|.
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999987666555554444333 332 3577888877764
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.4e-25 Score=224.19 Aligned_cols=209 Identities=21% Similarity=0.263 Sum_probs=175.1
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC--
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-- 283 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~-- 283 (455)
.+..|++++|.+..|+.+.+.+..++..++.|..+ .++.+|+||.||||||||+|++|||.+.+..++.++.+.+.+
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 34679999999999999999999999988888876 345679999999999999999999999999999999888752
Q ss_pred ----hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 284 ----NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 284 ----~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
+.-++.+|.-+ .+|+|+||||||.++..+ ...... .+.+...++|..+|+..+...+.++||+|
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~R--s~~e~e--------~srr~ktefLiq~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR--SDNEHE--------SSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc--CCcccc--------cchhhhhHHHhhhccccCCCCCeEEEEec
Confidence 24455555433 389999999999999855 222111 45577789999999998888888999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH-HHHHHHhhcC-CCCHHHHHHHHHc
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI-YEIKEIMQNV-RVTPADVGEQLLK 427 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa~i~~~l~~ 427 (455)
||.|+.+|.|++| ||...+++|.|+.++|..+|++++....+.+. .+++.++... +++..||.++|..
T Consensus 297 TN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 297 TNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred CCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 9999999999999 99999999999999999999999988866664 5677776644 5899999888763
No 38
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.3e-25 Score=227.70 Aligned_cols=206 Identities=24% Similarity=0.315 Sum_probs=180.0
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--- 282 (455)
++.+ ++++|...+...+.+.+..++..+..|...|.++++|+|+|||||||||.+++|+|++.+..++.++..++.
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 789999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred ---ChHHHHHHHHhcC--C-ceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ---SNSELRRVLLSTG--N-RSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ---~~~~L~~ll~~~~--~-~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
+++.|++.|..+. + |+||||||+|.+.+.+..... ...++.++|+..|||+... .++|+++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-----------~e~Rv~sqlltL~dg~~~~--~~vivl~ 325 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-----------VESRVVSQLLTLLDGLKPD--AKVIVLA 325 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-----------HHHHHHHHHHHHHhhCcCc--CcEEEEE
Confidence 5788999998875 4 999999999999874433221 2567889999999999643 5699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQN-VRVTPADVGEQLL 426 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 426 (455)
+||+|+.|||++.| ||||..++++.|+..+|.+|++.+....++....++..+... .++++||+...|.
T Consensus 326 atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ 395 (693)
T KOG0730|consen 326 ATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCR 395 (693)
T ss_pred ecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHH
Confidence 99999999999999 999999999999999999999999888776655667777654 4799999988865
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.8e-24 Score=218.84 Aligned_cols=184 Identities=23% Similarity=0.349 Sum_probs=142.6
Q ss_pred chhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc-eEEeecccc------CChHHHHHHHHhcC----------
Q 012846 233 RKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD-IYDLELSAV------HSNSELRRVLLSTG---------- 295 (455)
Q Consensus 233 ~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~-~~~l~~~~~------~~~~~L~~ll~~~~---------- 295 (455)
.|+.-.++|.++-+|+|||||||||||.+|+.|.+-|+.. --.++..++ .+++++|++|..+.
T Consensus 244 pp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 244 PPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred CHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 5788889999999999999999999999999999999753 334454443 26789999997763
Q ss_pred CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCcee
Q 012846 296 NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMD 375 (455)
Q Consensus 296 ~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d 375 (455)
.--||+|||||+++..++....+.. .....+++||.-|||+.+- .+++||+-||+++.||.||+||||+.
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~TG--------VhD~VVNQLLsKmDGVeqL--NNILVIGMTNR~DlIDEALLRPGRlE 393 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGSTG--------VHDTVVNQLLSKMDGVEQL--NNILVIGMTNRKDLIDEALLRPGRLE 393 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCCCC--------ccHHHHHHHHHhcccHHhh--hcEEEEeccCchhhHHHHhcCCCceE
Confidence 1249999999999875443332221 4566789999999999765 56999999999999999999999999
Q ss_pred eEEEeCCCCHHHHHHHHHHHcCCC-CC---CcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 376 VHIYMSYCTPCGFDTLAANYLGIT-DH---PLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 376 ~~I~~~~p~~~~r~~l~~~~l~~~-~~---~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
++++++.|++..|.+|++.+-... .+ ....++++++... .+|+||+..+..
T Consensus 394 VqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 394 VQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999998765432 11 1122344444332 499999987654
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.2e-22 Score=198.46 Aligned_cols=227 Identities=17% Similarity=0.167 Sum_probs=170.5
Q ss_pred ecCcchhhHHHhhhHHHHHhhhHHHhcCceeEEEecccccccccCCCceeeeecCCCCCcccccccHHHHHHHHHHHHHH
Q 012846 151 FHKQHKDKVLNSYFPYILRKSKSAQEENKTLKLYSLNQDHARRFGLDSWHWITFNHPATFDTLAMEAELKKMIIEDLERF 230 (455)
Q Consensus 151 ~~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~ 230 (455)
|..+.-..|.++|+..++.+...+++.++...-|+...+....-- ..-.........+|+.|++.+.+++.|.+....-
T Consensus 296 YTtkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i-~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aT 374 (630)
T KOG0742|consen 296 YTTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPI-QGSRSASSRGKDPLEGVILHPSLEKRIEDLAIAT 374 (630)
T ss_pred eeccccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchh-hhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHh
Confidence 345667789999999999999999988887655655433211000 0011112234456999999999999997765443
Q ss_pred HhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC-----ChHHHHHHHHhcC---CceEEEE
Q 012846 231 VKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-----SNSELRRVLLSTG---NRSILVV 302 (455)
Q Consensus 231 ~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~-----~~~~L~~ll~~~~---~~sIlli 302 (455)
.+.+ ....+-|++|||||||||||++|+-||...|.++-.+..+++. .-..++++|..+. ++-+|||
T Consensus 375 aNTK-----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFI 449 (630)
T KOG0742|consen 375 ANTK-----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFI 449 (630)
T ss_pred cccc-----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEe
Confidence 3222 2334558999999999999999999999999999988888875 2478899997764 5678999
Q ss_pred eccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 012846 303 EDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSY 382 (455)
Q Consensus 303 DeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~ 382 (455)
||+|+++..++....+. .....|+.||-..-. ....++++.+||+|.+||.|+-. |+|..|+||.
T Consensus 450 DEADAFLceRnktymSE---------aqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDsAV~D--Ride~veFpL 514 (630)
T KOG0742|consen 450 DEADAFLCERNKTYMSE---------AQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPL 514 (630)
T ss_pred hhhHHHHHHhchhhhcH---------HHHHHHHHHHHHhcc----cccceEEEeccCCccchhHHHHh--hhhheeecCC
Confidence 99999998655544332 455667777755322 12468899999999999999998 9999999999
Q ss_pred CCHHHHHHHHHHHcCC
Q 012846 383 CTPCGFDTLAANYLGI 398 (455)
Q Consensus 383 p~~~~r~~l~~~~l~~ 398 (455)
|..++|..|+..||..
T Consensus 515 PGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 515 PGEEERFKLLNLYLNK 530 (630)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999998864
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.83 E-value=1.6e-20 Score=162.63 Aligned_cols=123 Identities=33% Similarity=0.533 Sum_probs=100.5
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC------ChHHHHHHHHhc--CC-ceEEEEeccccccccccccCCC
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH------SNSELRRVLLST--GN-RSILVVEDIDCSLELEDRQAQP 318 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~------~~~~L~~ll~~~--~~-~sIlliDeiD~l~~~~~~~~~~ 318 (455)
+|||||||||||++|+++|+.++.+++.+++..+. ....+..+|..+ .. |+||+|||+|.+.... ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--QPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--STSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--cccc
Confidence 68999999999999999999999999999998876 246677777665 24 8999999999998744 1111
Q ss_pred ccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 012846 319 TTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSY 382 (455)
Q Consensus 319 ~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~ 382 (455)
. ......+..|++.++..... ..+++||+|||.++.+|++++| |||+..|++|.
T Consensus 79 ~--------~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 S--------SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp S--------HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred c--------cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 1 14567789999999987654 3469999999999999999998 89999999974
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=7.2e-19 Score=164.24 Aligned_cols=196 Identities=19% Similarity=0.241 Sum_probs=133.7
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS 283 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~ 283 (455)
.-.|.+|++++|+++++..+.-.+...... +.+ -..+|||||||+|||+||..||++++.++..++...+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~-l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEA-LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS----EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCC-cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 356889999999999998875555433222 111 247999999999999999999999999999998877777
Q ss_pred hHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-----cCCC---------
Q 012846 284 NSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-----SSCG--------- 349 (455)
Q Consensus 284 ~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-----~~~~--------- 349 (455)
..++..++.....+.|||||||+.+.. ....-|+..|+... ..+.
T Consensus 89 ~~dl~~il~~l~~~~ILFIDEIHRlnk---------------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 89 AGDLAAILTNLKEGDILFIDEIHRLNK---------------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp CHHHHHHHHT--TT-EEEECTCCC--H---------------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred HHHHHHHHHhcCCCcEEEEechhhccH---------------------HHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 788999998888999999999998743 12244566665321 1111
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHH-HHHHhhcCCCCHHHHHHHHHcC
Q 012846 350 DERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYE-IKEIMQNVRVTPADVGEQLLKN 428 (455)
Q Consensus 350 ~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~-i~~l~~~~~~tpa~i~~~l~~~ 428 (455)
...-+|++|++...|.+.|.. ||....++.+.+.++..+|+++.....+.++.++ ..+++.....||.-.-++|.+-
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 135688999999999999999 9999999999999999999998877777777654 4555666778888877776654
Q ss_pred CC
Q 012846 429 ED 430 (455)
Q Consensus 429 ~~ 430 (455)
+|
T Consensus 226 rD 227 (233)
T PF05496_consen 226 RD 227 (233)
T ss_dssp CC
T ss_pred HH
Confidence 33
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.7e-19 Score=170.22 Aligned_cols=178 Identities=20% Similarity=0.301 Sum_probs=133.7
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhh-CCCCCceeEEeCCCCCChHHHHHHHHHHcC---------CceEEeecc
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---------FDIYDLELS 279 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~-g~~~~rgiLL~GppGTGKT~la~aiA~~l~---------~~~~~l~~~ 279 (455)
|+.++-+.++|+.+.......+.-.+.-... -+.|.|-+|||||||||||+|++|+|+.+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 7788999999999998876555433222111 267888999999999999999999999883 345667766
Q ss_pred ccC------ChHHHHHHHHhcC-------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcccc
Q 012846 280 AVH------SNSELRRVLLSTG-------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWS 346 (455)
Q Consensus 280 ~~~------~~~~L~~ll~~~~-------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~ 346 (455)
.+. +...+.++|.+.. .-..++|||++.+...+........ . .+.-+.++.+|..||.+..
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~E--p----sDaIRvVNalLTQlDrlK~ 294 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNE--P----SDAIRVVNALLTQLDRLKR 294 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCC--C----chHHHHHHHHHHHHHHhcc
Confidence 654 2344555555432 2356789999999875533222111 1 1556788999999999976
Q ss_pred CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcC
Q 012846 347 SCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 347 ~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
. .+++|.+|+|-.+.||.|+.. |-|...++++|+.+++..|++..+.
T Consensus 295 ~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 295 Y--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred C--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 5 469999999999999999999 9999999999999999999987653
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=1.6e-17 Score=167.27 Aligned_cols=191 Identities=19% Similarity=0.230 Sum_probs=142.6
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCCh
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN 284 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~ 284 (455)
..|.+|++++|.++.++.+...+...... + ..+.++|||||||||||++|+++|++++.++..++...+...
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~-~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~ 90 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------G-EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP 90 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------C-CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh
Confidence 45789999999999999887776543222 1 234689999999999999999999999999888777666666
Q ss_pred HHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-----cC---------CCC
Q 012846 285 SELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-----SS---------CGD 350 (455)
Q Consensus 285 ~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-----~~---------~~~ 350 (455)
..+..++.....++||||||||.+... .. ..|.+.|+... .. .-.
T Consensus 91 ~~l~~~l~~l~~~~vl~IDEi~~l~~~------------------~~---e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 91 GDLAAILTNLEEGDVLFIDEIHRLSPV------------------VE---EILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred HHHHHHHHhcccCCEEEEecHhhcchH------------------HH---HHHHHHHHhcceeeeeccCccccceeecCC
Confidence 788888888888999999999987531 11 11223332211 00 002
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHH-HHHHHhhcCCCCHHHHHHHHH
Q 012846 351 ERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIY-EIKEIMQNVRVTPADVGEQLL 426 (455)
Q Consensus 351 ~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-~i~~l~~~~~~tpa~i~~~l~ 426 (455)
...+|++||++..++++|.+ ||...+.++.++.+++.++++......+..+.+ .+..++...+-+|..+...|.
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 36788999999999999988 999999999999999999999888776555544 355566666677766655553
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=3.2e-17 Score=159.94 Aligned_cols=176 Identities=14% Similarity=0.186 Sum_probs=123.1
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCC---CceeEEeCCCCCChHHHHHHHHHHc-------CCceEEeecc
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAW---KRGYLLYGPPGTGKSSLIAAMSNYL-------NFDIYDLELS 279 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~---~rgiLL~GppGTGKT~la~aiA~~l-------~~~~~~l~~~ 279 (455)
+++++|.+++|++|.+.+...... ......|... ..++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 678999999999998877554333 3334455542 3468999999999999999999875 2356666666
Q ss_pred ccCC------hHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceE
Q 012846 280 AVHS------NSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERI 353 (455)
Q Consensus 280 ~~~~------~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~i 353 (455)
++.+ ...++.+|..+ .++||||||+|.+.. .. ... .....+..|+..|+... ..++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~--~~--~~~---------~~~~~i~~Ll~~~e~~~----~~~~ 145 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR--GG--EKD---------FGKEAIDTLVKGMEDNR----NEFV 145 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc--CC--ccc---------hHHHHHHHHHHHHhccC----CCEE
Confidence 5532 34556666554 568999999998853 11 000 12345677888887642 3355
Q ss_pred EEEecCCC-----CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHH
Q 012846 354 IVFTTNHK-----DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYE 406 (455)
Q Consensus 354 iI~tTN~~-----~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~ 406 (455)
+|++++.. ..++|+|.+ ||+.+|+||.++.+++..|++.++......+.++
T Consensus 146 vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~ 201 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEE 201 (261)
T ss_pred EEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHH
Confidence 66554432 236889998 9999999999999999999999987654444444
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.74 E-value=1.8e-17 Score=163.48 Aligned_cols=174 Identities=17% Similarity=0.239 Sum_probs=125.1
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCC-ce--eEEeCCCCCChHHHHHHHHHHcC-------CceEEeeccc
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWK-RG--YLLYGPPGTGKSSLIAAMSNYLN-------FDIYDLELSA 280 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~-rg--iLL~GppGTGKT~la~aiA~~l~-------~~~~~l~~~~ 280 (455)
++++|.+++|++|.+.+.. +.....++..|...+ .| +||+||||||||++|+++|+.+. .+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999887654 445566677776554 23 89999999999999999998762 2577777655
Q ss_pred cC------ChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEE
Q 012846 281 VH------SNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERII 354 (455)
Q Consensus 281 ~~------~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ii 354 (455)
+. +......+|..+ .++||||||+|.+...++ .. . .....+..|+..|+... ++++|
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~~--~~-~---------~~~e~~~~L~~~me~~~----~~~~v 164 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPDN--ER-D---------YGSEAIEILLQVMENQR----DDLVV 164 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCCC--cc-c---------hHHHHHHHHHHHHhcCC----CCEEE
Confidence 42 233445555554 568999999998854211 00 0 23455677888887542 34677
Q ss_pred EEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH
Q 012846 355 VFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI 404 (455)
Q Consensus 355 I~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~ 404 (455)
|++++... .++|+|.+ ||+.+|+|+.++.+++.+|++.++......+.
T Consensus 165 I~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~ 217 (287)
T CHL00181 165 IFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLT 217 (287)
T ss_pred EEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCC
Confidence 77765321 34699999 99999999999999999999999876544443
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.74 E-value=4.2e-17 Score=162.45 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=133.0
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHH
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELR 288 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~ 288 (455)
+|++++|.++.++.|...+......+ ..+.+++||||||||||++++++|+.++.++..+..........+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 68999999999999887775443221 2245799999999999999999999999998877766655566777
Q ss_pred HHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc--------------cCCCCceEE
Q 012846 289 RVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW--------------SSCGDERII 354 (455)
Q Consensus 289 ~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~--------------~~~~~~~ii 354 (455)
..+.....+.||||||||.+.+.. ...|++.|+... .......++
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~~---------------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPAV---------------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHHH---------------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 777777788999999999875411 112333332111 001123788
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHH-HHHHHhhcCCCCHHHHHH
Q 012846 355 VFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIY-EIKEIMQNVRVTPADVGE 423 (455)
Q Consensus 355 I~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-~i~~l~~~~~~tpa~i~~ 423 (455)
|++||++..+++++.+ ||..++.++.++.++..++++...+.....+.+ .+..++...+-.|..+..
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ 200 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANR 200 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHH
Confidence 8999999999999998 999999999999999999999877654444433 344455554455554433
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.73 E-value=3e-17 Score=161.87 Aligned_cols=175 Identities=16% Similarity=0.212 Sum_probs=127.7
Q ss_pred cc-cccccHHHHHHHHHHHHHHHhchhHHhhhCCCC---CceeEEeCCCCCChHHHHHHHHHHcC-------CceEEeec
Q 012846 210 FD-TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAW---KRGYLLYGPPGTGKSSLIAAMSNYLN-------FDIYDLEL 278 (455)
Q Consensus 210 f~-~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~---~rgiLL~GppGTGKT~la~aiA~~l~-------~~~~~l~~ 278 (455)
++ .++|.+++|++|.+.+.. +..++.+.+.|.+. +.++||+||||||||++|+++|..+. .+++.+++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 44 689999999999887665 56666777788764 34799999999999999999998763 26777776
Q ss_pred cccC------ChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCce
Q 012846 279 SAVH------SNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDER 352 (455)
Q Consensus 279 ~~~~------~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ 352 (455)
.++. +...+..+|..+ .++||||||+|.+..... .. . ........|+..|+.. ..++
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~~--~~-~---------~~~~~~~~Ll~~le~~----~~~~ 161 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRPDN--ER-D---------YGQEAIEILLQVMENQ----RDDL 161 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHc-cCcEEEEechhhhccCCC--cc-c---------hHHHHHHHHHHHHhcC----CCCE
Confidence 5542 234556666554 569999999998753111 00 0 2344567888888753 2456
Q ss_pred EEEEecCCC--C---CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH
Q 012846 353 IIVFTTNHK--D---RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI 404 (455)
Q Consensus 353 iiI~tTN~~--~---~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~ 404 (455)
+||++++.. + .++|+|.+ ||+..|+||.++.+++..|++.++......+.
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~ 216 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFS 216 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccC
Confidence 777776532 3 24899999 99999999999999999999999876544333
No 49
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=9.6e-17 Score=169.02 Aligned_cols=158 Identities=25% Similarity=0.270 Sum_probs=119.7
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHH---
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELR--- 288 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~--- 288 (455)
+-.|.+++|++|++.+.--... +.-.+..+||+||||+|||||+++||+.++..|+.++++.+.++.+++
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4578999999999988543322 222234689999999999999999999999999999999998877664
Q ss_pred ------------HHHHhcC-CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhh---------cccc
Q 012846 289 ------------RVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD---------GLWS 346 (455)
Q Consensus 289 ------------~ll~~~~-~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD---------g~~~ 346 (455)
+-+..+. ..-+++|||||.+.. +-.+++ -+.||..|| .+..
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s--s~rGDP---------------aSALLEVLDPEQN~~F~DhYLe 459 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS--SFRGDP---------------ASALLEVLDPEQNNTFSDHYLE 459 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccC--CCCCCh---------------HHHHHhhcCHhhcCchhhcccc
Confidence 3333332 567999999999865 222221 244554444 2211
Q ss_pred CC--CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 347 SC--GDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 347 ~~--~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
-. =.++++|+|+|..+.+|.+|+. || ..|+++-.+.++...|+++||
T Consensus 460 v~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 460 VPYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 11 1369999999999999999999 99 489999999999999999998
No 50
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=1.4e-16 Score=177.11 Aligned_cols=158 Identities=26% Similarity=0.266 Sum_probs=116.2
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCCh-------
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN------- 284 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~------- 284 (455)
+++|.+++|+.|.+.+...... +...+..+||+||||||||++|++||+.++.+++.++++.+.+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4789999999998876543221 22334579999999999999999999999999999987655322
Q ss_pred --------HHHHHHHHhcC-CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhc-----cccC---
Q 012846 285 --------SELRRVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG-----LWSS--- 347 (455)
Q Consensus 285 --------~~L~~ll~~~~-~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg-----~~~~--- 347 (455)
..+.+.|..+. .+.||||||||.+... ..+ ...+.||..||. +...
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~--~~~---------------~~~~aLl~~ld~~~~~~f~d~~~~ 456 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSS--FRG---------------DPASALLEVLDPEQNNAFSDHYLD 456 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCc--cCC---------------CHHHHHHHhcCHHhcCccccccCC
Confidence 34455555443 4569999999998641 110 113456665552 1000
Q ss_pred ---CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 348 ---CGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 348 ---~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
...++++|+|||.++.||++|++ ||+ .|+|+.++.+++..|+++|+
T Consensus 457 ~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 457 VPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 01358899999999999999999 996 78999999999999999987
No 51
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.72 E-value=3.2e-16 Score=148.35 Aligned_cols=180 Identities=21% Similarity=0.257 Sum_probs=147.6
Q ss_pred CCceeeeecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCc
Q 012846 196 LDSWHWITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFD 272 (455)
Q Consensus 196 ~~~~~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~ 272 (455)
++...+|...++..+++|+|.+.+|+.|++....|+.. . +...+||||++|||||++++|+.++. |..
T Consensus 12 ~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--------~-pannvLL~G~rGtGKSSlVkall~~y~~~GLR 82 (249)
T PF05673_consen 12 SGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQG--------L-PANNVLLWGARGTGKSSLVKALLNEYADQGLR 82 (249)
T ss_pred CCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC--------C-CCcceEEecCCCCCHHHHHHHHHHHHhhcCce
Confidence 34577888888889999999999999999999999875 2 35689999999999999999998865 678
Q ss_pred eEEeeccccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCce
Q 012846 273 IYDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDER 352 (455)
Q Consensus 273 ~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ 352 (455)
++.++-.++.+-..|...+...+.+-|||+||+- ++ ........|-..|||-....++++
T Consensus 83 lIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--Fe------------------~~d~~yk~LKs~LeGgle~~P~Nv 142 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLS--FE------------------EGDTEYKALKSVLEGGLEARPDNV 142 (249)
T ss_pred EEEECHHHhccHHHHHHHHhcCCCCEEEEecCCC--CC------------------CCcHHHHHHHHHhcCccccCCCcE
Confidence 8899988888888999999888899999999864 32 233445778889999888888999
Q ss_pred EEEEecCCCCCCCcccc----------C-----------CCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH
Q 012846 353 IIVFTTNHKDRLDPAVL----------R-----------PGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI 404 (455)
Q Consensus 353 iiI~tTN~~~~LD~aLl----------r-----------pgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~ 404 (455)
+|.+|+|+-..++..+. . ..||...|.|..|+.++..+|++.++...+.++.
T Consensus 143 liyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~ 215 (249)
T PF05673_consen 143 LIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELD 215 (249)
T ss_pred EEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 99999997544432211 1 2399999999999999999999999976665554
No 52
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.1e-16 Score=165.57 Aligned_cols=197 Identities=21% Similarity=0.303 Sum_probs=139.9
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChH------
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNS------ 285 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~------ 285 (455)
+-.|.+++|++|++.+.--. -.|...+..++|+||||+|||+++++||..+|+.|+.++.+.+.+..
T Consensus 412 DHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 56788999999999874221 12344456789999999999999999999999999999999887544
Q ss_pred ---------HHHHHHHhcC-CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHh---------hhhhcccc
Q 012846 286 ---------ELRRVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLL---------NFLDGLWS 346 (455)
Q Consensus 286 ---------~L~~ll~~~~-~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL---------~~lDg~~~ 346 (455)
.+.+.|.... ..-+++|||||.+.. +-.++.. +.|| ||+|.+..
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~--g~qGDPa---------------sALLElLDPEQNanFlDHYLd 547 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS--GHQGDPA---------------SALLELLDPEQNANFLDHYLD 547 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC--CCCCChH---------------HHHHHhcChhhccchhhhccc
Confidence 4455555554 677999999999862 2222211 2333 33333322
Q ss_pred CCC--CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcCCCCHHHH---
Q 012846 347 SCG--DERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNVRVTPADV--- 421 (455)
Q Consensus 347 ~~~--~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i--- 421 (455)
-+- ..+++|+|.|..+.|+++|+. ||. .|+++-...++...|+++||- ...+...+++|.+|
T Consensus 548 Vp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi----------p~a~~~~gl~~e~v~is 614 (906)
T KOG2004|consen 548 VPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI----------PQALKDCGLKPEQVKIS 614 (906)
T ss_pred cccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh----------hHHHHHcCCCHHhcCcc
Confidence 111 359999999999999999999 994 899999999999999999983 23333344444332
Q ss_pred ---HHHHHcCCCHHHHHHHHHHHHHHH
Q 012846 422 ---GEQLLKNEDPEIALKGLLEFLNAK 445 (455)
Q Consensus 422 ---~~~l~~~~~~~~al~~l~~~l~~~ 445 (455)
...|+++.+.++.+++|.+.+++.
T Consensus 615 ~~al~~lI~~YcrEaGVRnLqk~iekI 641 (906)
T KOG2004|consen 615 DDALLALIERYCREAGVRNLQKQIEKI 641 (906)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 233456667777887777776654
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.70 E-value=4.2e-16 Score=148.59 Aligned_cols=192 Identities=18% Similarity=0.217 Sum_probs=147.8
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCCh
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN 284 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~ 284 (455)
-.|..|++.+|++++|+++.=.++....+.+ ..-.+|||||||.|||+||..||+++|.++-..+...+...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 3588899999999999888666654433221 23469999999999999999999999999999999999889
Q ss_pred HHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-----cCCC---------C
Q 012846 285 SELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-----SSCG---------D 350 (455)
Q Consensus 285 ~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-----~~~~---------~ 350 (455)
.+|..+|.......|||||||+++.+... .-|-..|+.+. .... .
T Consensus 92 gDlaaiLt~Le~~DVLFIDEIHrl~~~vE---------------------E~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 92 GDLAAILTNLEEGDVLFIDEIHRLSPAVE---------------------EVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred hhHHHHHhcCCcCCeEEEehhhhcChhHH---------------------HHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 99999999999999999999999864111 11222332210 0000 1
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH-HHHHHHhhcCCCCHHHHHHHHHc
Q 012846 351 ERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI-YEIKEIMQNVRVTPADVGEQLLK 427 (455)
Q Consensus 351 ~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~~~tpa~i~~~l~~ 427 (455)
..-+|++|.+...|...|.. ||.+..++.+.+.++...|+++.-...+.++. +...+++....-||.-...+|.+
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHH
Confidence 35688999999999999988 99999999999999999999988766665554 34566667778899776666653
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=99.70 E-value=2.5e-16 Score=166.51 Aligned_cols=167 Identities=20% Similarity=0.301 Sum_probs=127.9
Q ss_pred eecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 202 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
+....|.+|++|+|.++.++.+.+.+..+.. |.+ ++++|||||||||||++|+++|++++++++.++.++.
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~-~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKP-KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 4667899999999999999999998876652 223 6789999999999999999999999999999999887
Q ss_pred CChHHHHHHHHhc--------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceE
Q 012846 282 HSNSELRRVLLST--------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERI 353 (455)
Q Consensus 282 ~~~~~L~~ll~~~--------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~i 353 (455)
.+...+.+++... ..+.||+|||+|.+... .....+..|++.++.. ...
T Consensus 76 r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-----------------~d~~~~~aL~~~l~~~------~~~ 132 (482)
T PRK04195 76 RTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-----------------EDRGGARAILELIKKA------KQP 132 (482)
T ss_pred ccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-----------------cchhHHHHHHHHHHcC------CCC
Confidence 7666666665433 14789999999987531 1112346677776632 234
Q ss_pred EEEecCCCCCCCc-cccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc
Q 012846 354 IVFTTNHKDRLDP-AVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL 403 (455)
Q Consensus 354 iI~tTN~~~~LD~-aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 403 (455)
||+++|.+..+++ .|.+ | ...|.|+.|+.+++..+++..+...+..+
T Consensus 133 iIli~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i 180 (482)
T PRK04195 133 IILTANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIEC 180 (482)
T ss_pred EEEeccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 6778899988887 4544 4 46899999999999999988876554433
No 55
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=9.9e-16 Score=164.37 Aligned_cols=159 Identities=15% Similarity=0.262 Sum_probs=122.7
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
...|.+|++|+|++.+++.|.+.+. . ...+..||||||+|||||++++++|+.+++
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~----~--------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD----G--------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 4679999999999999888876653 1 123568999999999999999999998864
Q ss_pred ------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 272 ------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 272 ------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+++.++..+-..-+++++++.... ...|+||||+|.+.. ..
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------------~A 135 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------------HA 135 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------------HH
Confidence 355555544334466777776532 457999999998742 23
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP 402 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~ 402 (455)
.+.||..|+.. ...++||++||++++|.+.+++ |+ .++.|..++.++....++..+..++..
T Consensus 136 ~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 136 FNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred HHHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 57788888764 2458899999999999999998 88 799999999999988888877655433
No 56
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=3.9e-16 Score=165.54 Aligned_cols=181 Identities=16% Similarity=0.264 Sum_probs=132.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
..+|.+|++|+|++.+++.|.+.+.. ...+..|||+||+|||||++++++|+.++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 46799999999999999888776641 123568999999999999999999998875
Q ss_pred -----------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCc
Q 012846 272 -----------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLR 328 (455)
Q Consensus 272 -----------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~ 328 (455)
+++.++..+-..-+++++++.... +..|+||||+|.+..
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~------------------ 138 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN------------------ 138 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH------------------
Confidence 455555544334566777765532 457999999998742
Q ss_pred cchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHH-H
Q 012846 329 PMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYE-I 407 (455)
Q Consensus 329 ~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~-i 407 (455)
...+.||..|+.- .+++++|++||+++.|.+.+++ |+ .++.|..++.++..+.++..+..++....++ +
T Consensus 139 ---~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL 208 (700)
T PRK12323 139 ---HAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNAL 208 (700)
T ss_pred ---HHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHH
Confidence 2357788888763 3568899999999999999998 87 7899999999999888887776554444332 3
Q ss_pred HHHhhcCCCCHHHHHHH
Q 012846 408 KEIMQNVRVTPADVGEQ 424 (455)
Q Consensus 408 ~~l~~~~~~tpa~i~~~ 424 (455)
..++...+.++.+...+
T Consensus 209 ~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 209 RLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHcCCCHHHHHHH
Confidence 33444444455444433
No 57
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.66 E-value=5.3e-15 Score=148.06 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=114.2
Q ss_pred eeecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccc
Q 012846 201 WITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA 280 (455)
Q Consensus 201 ~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~ 280 (455)
++....|.+|++++|.++.++.+...+. . | ..+..+|||||||+|||++++++|+.++.+++.++++.
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~----~-------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVK----K-------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 3467889999999999999888877653 1 2 23456778999999999999999999999999999887
Q ss_pred cCChHHHHHHH----Hhc---CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceE
Q 012846 281 VHSNSELRRVL----LST---GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERI 353 (455)
Q Consensus 281 ~~~~~~L~~ll----~~~---~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~i 353 (455)
.....++..+ ... ..+.||+|||+|.+... . ....|...++... ....
T Consensus 79 -~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------------~---~~~~L~~~le~~~----~~~~ 133 (316)
T PHA02544 79 -CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------------D---AQRHLRSFMEAYS----KNCS 133 (316)
T ss_pred -ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-----------------H---HHHHHHHHHHhcC----CCce
Confidence 3233333322 222 35789999999976210 1 1233444555532 3467
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012846 354 IVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANY 395 (455)
Q Consensus 354 iI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 395 (455)
+|+|||.+..+++++.+ |+. .+.++.|+.+++..+++.+
T Consensus 134 ~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 134 FIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred EEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 88899999999999998 884 7899999999988776654
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.9e-15 Score=156.59 Aligned_cols=159 Identities=14% Similarity=0.313 Sum_probs=118.0
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----------- 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----------- 271 (455)
....|.+|++++|.+.+.+.|...+. . | ..+..|||+||||||||++|+++|+.++.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~----~-------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALK----S-------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 35679999999999988887766553 1 1 23456999999999999999999999875
Q ss_pred -------------ceEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchh
Q 012846 272 -------------DIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQV 332 (455)
Q Consensus 272 -------------~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (455)
+++.++...-..-+.++++.... ....|++|||+|.+.. .
T Consensus 78 C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------------~ 136 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------------Q 136 (484)
T ss_pred CcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------------H
Confidence 34455543322345566554332 2456999999998742 3
Q ss_pred hHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCC
Q 012846 333 TLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH 401 (455)
Q Consensus 333 ~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 401 (455)
.++.||..|+.. ...+++|++|+.++.|.+++++ |+ .++.|..++.++....++..+..++.
T Consensus 137 A~NALLKtLEEP----p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 137 SFNALLKTLEEP----PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred HHHHHHHHhhcC----CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCC
Confidence 467788888653 3568889999999999999998 88 57889999998888888877665543
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.6e-15 Score=157.39 Aligned_cols=156 Identities=19% Similarity=0.365 Sum_probs=115.7
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
..+|.+|++++|++.+++.|...+. .. ..+.++|||||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~----~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK----KN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 4679999999999988776655442 21 23567999999999999999999998865
Q ss_pred ------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 272 ------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 272 ------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+++.++.+.-..-+.++++..... ...||+|||+|.+.. ..
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------------~a 133 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------------EA 133 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------------HH
Confidence 466676654334456666554332 457999999998742 22
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
++.||..++.. ++.+++|++|+++..+++++.+ |+ ..+.|..++.++...+++..+...
T Consensus 134 ~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~e 192 (472)
T PRK14962 134 FNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAE 192 (472)
T ss_pred HHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHc
Confidence 46778887753 3457777788888899999998 87 479999999999888887766433
No 60
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.9e-15 Score=150.41 Aligned_cols=153 Identities=23% Similarity=0.304 Sum_probs=111.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCCh
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN 284 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~ 284 (455)
-.|.++++++|++.+...- ..+.+.+.. ..-.+.+|||||||||||+|+.||+.++.+|..++...- +-
T Consensus 18 mRP~~lde~vGQ~HLlg~~-~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gv 86 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEG-KPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GV 86 (436)
T ss_pred hCCCCHHHhcChHhhhCCC-chHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cH
Confidence 4688999999988665221 111111211 123479999999999999999999999999999986553 45
Q ss_pred HHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE-e
Q 012846 285 SELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF-T 357 (455)
Q Consensus 285 ~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~-t 357 (455)
.+++.++..+. ++.|||||||+.+-. .....||-.++. +.+++|+ |
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK---------------------~QQD~lLp~vE~------G~iilIGAT 139 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNK---------------------AQQDALLPHVEN------GTIILIGAT 139 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcCh---------------------hhhhhhhhhhcC------CeEEEEecc
Confidence 78888887662 579999999998742 112456776653 2366665 5
Q ss_pred cCCC-CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 358 TNHK-DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 358 TN~~-~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
|.+| =.|.+||++ |. ....+...+.++.++++++-+..
T Consensus 140 TENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 140 TENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred CCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhh
Confidence 6566 578999998 76 57889999999999999884433
No 61
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4e-15 Score=158.29 Aligned_cols=159 Identities=17% Similarity=0.310 Sum_probs=121.5
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
..+|.+|++|+|.+.+++.|...+. . | ..+..|||+||||||||++|+++|+.++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~----~-------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE----R-------G-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 4568999999999999888877664 1 1 23568999999999999999999999865
Q ss_pred ------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 272 ------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 272 ------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+++.++.++-..-+.+++++.... +..|++|||+|.+.. ..
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------------~A 134 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------------HS 134 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------------HH
Confidence 456666654444567777775542 457999999997742 23
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP 402 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~ 402 (455)
.+.||..|+.. .+.+.+|++|+.+..+++.+++ |+ .++.|..++.++....++..+..++..
T Consensus 135 ~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 135 FNALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred HHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 57788888763 2457788888889999999887 87 689999999999888888777655433
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=8.4e-15 Score=149.54 Aligned_cols=160 Identities=15% Similarity=0.249 Sum_probs=116.3
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
...|.+|++|+|++.+++.+...+. . | ..+..|||+||||||||++|+++|+.+..
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~----~-------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLS----L-------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHH----c-------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 4568999999999999888766553 1 1 23568999999999999999999998853
Q ss_pred ------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 272 ------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 272 ------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+++.++.+.-..-..+++++.... ...|++|||+|.+.. ..
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------------~a 135 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------------HS 135 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------------HH
Confidence 344444433223455666665432 356999999997632 22
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL 403 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 403 (455)
.+.||..++.. ++...+|++|++++.+.+++.. |+ ..++++.++.++...+++..+...+...
T Consensus 136 ~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i 198 (363)
T PRK14961 136 FNALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDT 198 (363)
T ss_pred HHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 46678877753 2356778888888999999987 77 6899999999999988887665544333
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=99.62 E-value=8.9e-15 Score=146.88 Aligned_cols=159 Identities=15% Similarity=0.195 Sum_probs=113.9
Q ss_pred eecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC-----CceEEe
Q 012846 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN-----FDIYDL 276 (455)
Q Consensus 202 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~-----~~~~~l 276 (455)
+....|.+|++++|++++.+.|...+. . + . ...+|||||||||||++|.++|+++. ..++.+
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~----~-------~-~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIAR----D-------G-N-MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHh----c-------C-C-CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 456789999999999988877765432 1 1 1 13599999999999999999999872 235666
Q ss_pred eccccCChHHHHHHHHh---c------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC
Q 012846 277 ELSAVHSNSELRRVLLS---T------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS 347 (455)
Q Consensus 277 ~~~~~~~~~~L~~ll~~---~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~ 347 (455)
+.++...-+.++..+.. . ....|++|||+|.+.. .. .+.|+..|+...
T Consensus 71 n~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------------------~a---q~aL~~~lE~~~-- 127 (319)
T PLN03025 71 NASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS------------------GA---QQALRRTMEIYS-- 127 (319)
T ss_pred cccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH------------------HH---HHHHHHHHhccc--
Confidence 66665444455554432 1 2357999999998743 11 255666666432
Q ss_pred CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCC
Q 012846 348 CGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH 401 (455)
Q Consensus 348 ~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 401 (455)
....+|++||.+..+.++|.+ |+ ..++|+.|+.++....++..+..++.
T Consensus 128 --~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi 176 (319)
T PLN03025 128 --NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKV 176 (319)
T ss_pred --CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCC
Confidence 234577889989999999988 76 58999999999988888876655443
No 64
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=7.8e-15 Score=155.27 Aligned_cols=159 Identities=15% Similarity=0.301 Sum_probs=119.8
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD---------- 272 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~---------- 272 (455)
....|.+|++|+|.+.+++.|.+.+.. ...+..|||+||||||||++|+++|+.++..
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 345789999999999999888776631 1235679999999999999999999988642
Q ss_pred --------------eEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchh
Q 012846 273 --------------IYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQV 332 (455)
Q Consensus 273 --------------~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (455)
++.++.+.-..-+++++++.... +..|++|||+|.+.. .
T Consensus 76 C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------------~ 134 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------------H 134 (509)
T ss_pred CHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------------H
Confidence 56666554445567777775532 346999999998743 2
Q ss_pred hHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCC
Q 012846 333 TLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH 401 (455)
Q Consensus 333 ~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 401 (455)
..+.||..|+.. .+.+++|++|+.+..+.+.+++ |+ ..++|..++.++....++..+..++.
T Consensus 135 a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi 196 (509)
T PRK14958 135 SFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENV 196 (509)
T ss_pred HHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 357788888764 3457788888889999999888 77 67889999888877776666655433
No 65
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.3e-14 Score=151.76 Aligned_cols=159 Identities=13% Similarity=0.231 Sum_probs=121.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC-------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN------------- 270 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~------------- 270 (455)
...|.+|++|+|++.+++.+.+.+. . | ..+.++||+||||||||++|+++|+.++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~----~-------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT----L-------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 4568999999999988887765442 1 2 2357899999999999999999998653
Q ss_pred -----------CceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 271 -----------FDIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 271 -----------~~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
.+++.++.++..+-++++.++.... +.-|++|||+|.+.. ..
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------------~A 132 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------------SA 132 (491)
T ss_pred HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------------HH
Confidence 4567777765555677888776542 457999999997632 23
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP 402 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~ 402 (455)
++.||..|+.. .+.+++|++|+.++.+.++++. |+ ..+.|..++.++....++..+..++..
T Consensus 133 ~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 133 FNALLKTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred HHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCC
Confidence 57888888764 3458888888999999999988 77 578999999999888888776655433
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.8e-14 Score=151.84 Aligned_cols=159 Identities=18% Similarity=0.289 Sum_probs=118.8
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----------- 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----------- 271 (455)
....|.+|++++|++.+.+.+...+. . | ..+.++||+||||||||++|+++|+.++.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~----~-------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTIL----N-------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 34679999999999998887765442 1 1 23568999999999999999999998864
Q ss_pred -----------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCc
Q 012846 272 -----------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLR 328 (455)
Q Consensus 272 -----------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~ 328 (455)
+++.++...-..-++++.++..+. ...|++|||+|.+..
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------------ 142 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------------ 142 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH------------------
Confidence 334444433334567788776542 457999999997632
Q ss_pred cchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCC
Q 012846 329 PMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH 401 (455)
Q Consensus 329 ~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 401 (455)
..++.||..|+.. +..+++|++|+.++.+++++.+ |+ ..++|..++.++...+++..+..++.
T Consensus 143 ---~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 143 ---GAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred ---HHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 2356788877753 3457888888889999999988 77 57899999999998888877765543
No 67
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.60 E-value=3.2e-14 Score=144.59 Aligned_cols=162 Identities=15% Similarity=0.314 Sum_probs=118.5
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----------- 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----------- 271 (455)
....|.+|++++|.+..++.+.+.+.. | ..+..+|||||||+|||++++++|+.+..
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 345788999999999999888776531 1 23568999999999999999999988742
Q ss_pred -------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchh
Q 012846 272 -------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQV 332 (455)
Q Consensus 272 -------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (455)
+++.++.........+++++..+. .+.|++|||+|.+.. .
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------------~ 132 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------------S 132 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------------H
Confidence 344555443333445666665542 346999999997632 2
Q ss_pred hHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH
Q 012846 333 TLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI 404 (455)
Q Consensus 333 ~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~ 404 (455)
..+.||..++.. +...++|++||+++.+.+++.+ |+ ..++++.|+.++...+++.++...+..+.
T Consensus 133 ~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~ 197 (355)
T TIGR02397 133 AFNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIE 197 (355)
T ss_pred HHHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 346778877653 3457788888999999999988 77 57899999999999988887765544433
No 68
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.8e-14 Score=154.86 Aligned_cols=157 Identities=15% Similarity=0.278 Sum_probs=119.2
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
..+|.+|++|+|.+.+++.|...+. . | ..+..|||+||+|+|||++|+++|+.++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~----~-------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALD----L-------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 3568999999999999887766553 1 1 23567999999999999999999998865
Q ss_pred ------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 272 ------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 272 ------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+++.++.++-..-+.+++++.... ..-|++|||+|.+.. ..
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------------~a 135 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------------HS 135 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------------HH
Confidence 345555443223456777665432 456999999997742 34
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD 400 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 400 (455)
.+.||..|+.. ++.+++|++|+.+..|.+.++. |+ .+++|..++.++....++..+..++
T Consensus 136 ~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 136 FNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred HHHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 68899988763 3457788888899999999998 86 8999999999999888887765443
No 69
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.2e-14 Score=156.82 Aligned_cols=158 Identities=18% Similarity=0.288 Sum_probs=116.3
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc-----------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD----------- 272 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~----------- 272 (455)
..+|.+|++|+|.+.+++.|.+.+. . | ..+..|||+||||||||++|+++|+.++..
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~----~-------~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALT----Q-------Q-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----h-------C-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 4568999999999999888766543 1 1 235679999999999999999999998753
Q ss_pred -------------eEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 273 -------------IYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 273 -------------~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
++.++..+...-..++.+..... ...|+||||+|.+.. ..
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~---------------------eA 135 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR---------------------SS 135 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---------------------HH
Confidence 12233322122345666654332 457999999998732 34
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH 401 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 401 (455)
++.||..|+.. .+.+++|++|+.+..|.++++. |+ .+++|..++.++....++..+..++.
T Consensus 136 qNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 136 FNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred HHHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 68889988764 3457777788889999999998 87 78999999999999888887755433
No 70
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.60 E-value=9.4e-15 Score=161.73 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=116.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceEE
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYD 275 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~ 275 (455)
.|..++.++|.++...++++.+. ...+.+++|+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 56679999999888877765542 1235689999999999999999999987 788999
Q ss_pred eeccccCC--------hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc
Q 012846 276 LELSAVHS--------NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW 345 (455)
Q Consensus 276 l~~~~~~~--------~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~ 345 (455)
++++.+.. +..++++|..+. .++||||||||.+........ ......+-|+..+.
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~------------~~~~~~~~L~~~l~--- 308 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG------------GSMDASNLLKPALS--- 308 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC------------ccHHHHHHHHHHHh---
Confidence 99877642 357888887654 589999999999976322111 00111122334432
Q ss_pred cCCCCceEEEEecCCC-----CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcC
Q 012846 346 SSCGDERIIVFTTNHK-----DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 346 ~~~~~~~iiI~tTN~~-----~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
.+++.+|++||.. -.+|+||.| ||. .|+++.|+.+++.+|++....
T Consensus 309 ---~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 309 ---SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred ---CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 1468888888863 357999999 997 799999999999999996554
No 71
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.7e-14 Score=154.63 Aligned_cols=160 Identities=18% Similarity=0.325 Sum_probs=120.7
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
...|.+|++|+|.+.+++.|...+.. ...+.+|||+||+|+|||++|+++|+.+++
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 46789999999999999888776541 133578999999999999999999998754
Q ss_pred ------------ceEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 272 ------------DIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 272 ------------~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+++.++...-...+.++.++... ....|+||||+|.+.. ..
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------------~A 135 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------------SA 135 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------------HH
Confidence 23444444333446777777543 2457999999996532 23
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL 403 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 403 (455)
++.||..|+.. .+.+.+|++||.+..+.+.++. |+ ..+.|+.++.++....++..+..++...
T Consensus 136 ~NALLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~i 198 (709)
T PRK08691 136 FNAMLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAY 198 (709)
T ss_pred HHHHHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCc
Confidence 57788888764 2457788888999999999886 87 6788999999998888888777655443
No 72
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.5e-14 Score=153.51 Aligned_cols=160 Identities=16% Similarity=0.295 Sum_probs=119.1
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
...|.+|++|+|++.+++.|.+.+. . ...+..|||+||+|||||++|+++|+.+++
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~----~--------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALT----Q--------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 4578999999999988887766553 1 123567999999999999999999998864
Q ss_pred -----------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCc
Q 012846 272 -----------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLR 328 (455)
Q Consensus 272 -----------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~ 328 (455)
+++.++..+-..-+++++++.... +.-|++|||+|.+..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~------------------ 138 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN------------------ 138 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH------------------
Confidence 344454443334457777776532 346999999998743
Q ss_pred cchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc
Q 012846 329 PMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL 403 (455)
Q Consensus 329 ~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 403 (455)
...+.||..|+.. .+..++|++|+.+..+.+.++. |+ .+++|..++.++....++..+..++...
T Consensus 139 ---~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~i 203 (618)
T PRK14951 139 ---TAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPA 203 (618)
T ss_pred ---HHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2357788887753 3457788888889999999888 77 7899999999998888887765554433
No 73
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.2e-14 Score=151.57 Aligned_cols=159 Identities=16% Similarity=0.283 Sum_probs=120.1
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC-------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN------------- 270 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~------------- 270 (455)
...|.+|++|+|.+.+++.+.+.+.. ...++.||||||+|||||++|+.+|+.++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 34689999999999988888776542 12357899999999999999999999874
Q ss_pred -----------CceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 271 -----------FDIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 271 -----------~~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
.+++.++.+....-+.++.+..... ..-|++|||+|.+.. ..
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------------~a 135 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------------GA 135 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------------HH
Confidence 3556666654344466777765542 457999999997742 23
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP 402 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~ 402 (455)
++.||..++.. +..+++|++|+.++.+++++++ |+. .+.|+.++.++....++..+...+..
T Consensus 136 ~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 136 FNALLKTLEEP----PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred HHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 57788887754 3457888888889999999988 874 68899999999888888776554433
No 74
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=8e-14 Score=143.04 Aligned_cols=179 Identities=15% Similarity=0.192 Sum_probs=123.2
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD--------------- 272 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~--------------- 272 (455)
..|++|+|++.+++.|.+.+..... .+...+...+.+|||+||||+|||++|.++|+.+..+
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 3589999999999998888764322 2333455567899999999999999999999876442
Q ss_pred --------eEEeeccc-cCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhH
Q 012846 273 --------IYDLELSA-VHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGL 337 (455)
Q Consensus 273 --------~~~l~~~~-~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 337 (455)
++.+.... ...-+++++++.... ...|++|||+|.+.. ...+.|
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------------~aanaL 137 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------------RAANAL 137 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH---------------------HHHHHH
Confidence 23333321 123456777775542 346999999998843 123678
Q ss_pred hhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcCCCC
Q 012846 338 LNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNVRVT 417 (455)
Q Consensus 338 L~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~t 417 (455)
|..|+.. .+..++|++|++++.|+|++++ |+ ..+.|+.|+.++....+..-.+.. .+....++...+.+
T Consensus 138 Lk~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~~~~----~~~a~~la~~s~G~ 206 (394)
T PRK07940 138 LKAVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRDGVD----PETARRAARASQGH 206 (394)
T ss_pred HHHhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhcCCC----HHHHHHHHHHcCCC
Confidence 8888753 3346677777779999999998 87 699999999999877776332221 23334444444455
Q ss_pred HHHH
Q 012846 418 PADV 421 (455)
Q Consensus 418 pa~i 421 (455)
|...
T Consensus 207 ~~~A 210 (394)
T PRK07940 207 IGRA 210 (394)
T ss_pred HHHH
Confidence 5444
No 75
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.58 E-value=3.8e-14 Score=147.21 Aligned_cols=151 Identities=22% Similarity=0.304 Sum_probs=111.1
Q ss_pred cCCCCCcccccccHHHHHH---HHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccc
Q 012846 204 FNHPATFDTLAMEAELKKM---IIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA 280 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~---i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~ 280 (455)
..+|.+|++++|.+..... +...+. . ....+++|+||||||||++|+++|+.++.+++.++...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~----~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIE----A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHH----c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 4568999999999887554 544432 1 12347999999999999999999999999999998765
Q ss_pred cCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEE
Q 012846 281 VHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERII 354 (455)
Q Consensus 281 ~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ii 354 (455)
. ....++.++... ..+.||||||||.+.. .....|+..++. ..+++
T Consensus 72 ~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~---------------------~~q~~LL~~le~------~~iil 123 (413)
T PRK13342 72 S-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK---------------------AQQDALLPHVED------GTITL 123 (413)
T ss_pred c-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH---------------------HHHHHHHHHhhc------CcEEE
Confidence 4 344566665443 2678999999998742 112456666653 23556
Q ss_pred EEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 355 VFTT--NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 355 I~tT--N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
|++| |....++++|++ |+ ..+.++.++.++...+++..+..
T Consensus 124 I~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 124 IGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred EEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 6544 334589999999 88 68999999999999999987643
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.9e-14 Score=148.32 Aligned_cols=158 Identities=19% Similarity=0.372 Sum_probs=116.8
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
...|.+|++|+|++.+++.|...+.. ...+..+|||||||||||++|+++|+.+..
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 45789999999999988887766542 123567899999999999999999998853
Q ss_pred -----------ceEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchhhH
Q 012846 272 -----------DIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTL 334 (455)
Q Consensus 272 -----------~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~l 334 (455)
+++.++.+....-..++.+.... ..+.||+|||+|.+. ...+
T Consensus 75 sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------------~~a~ 133 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------------KSAF 133 (504)
T ss_pred hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------------HHHH
Confidence 25555554333345556554332 256799999998652 2335
Q ss_pred hhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCC
Q 012846 335 SGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH 401 (455)
Q Consensus 335 s~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 401 (455)
+.||..|+.. ....++|++||.+..+.+++.+ |+ .+++|+.++.++....++..+...+.
T Consensus 134 naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi 193 (504)
T PRK14963 134 NALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGR 193 (504)
T ss_pred HHHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 7788887763 3457888889999999999988 77 47999999999998888877655443
No 77
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.8e-14 Score=151.85 Aligned_cols=157 Identities=16% Similarity=0.315 Sum_probs=117.8
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
...|.+|++|+|.+.+++.+...+.. ...+..|||+||||+|||++|+++|+.++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 35688999999999999887766541 123568999999999999999999999864
Q ss_pred ------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 272 ------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 272 ------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+++.++.+.-..-+.+++++.... ...|++|||+|.+.. ..
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------------~a 135 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------------SA 135 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------------HH
Confidence 344455443334466777765442 357999999997642 23
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD 400 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 400 (455)
.+.||..|+.. ++.+++|++|++++.+.+.++. |+ ..++|..++.++....+...+..++
T Consensus 136 ~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~eg 195 (527)
T PRK14969 136 FNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQEN 195 (527)
T ss_pred HHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 57788888764 3457788888889999988887 77 7899999999998887777665443
No 78
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=5e-14 Score=152.44 Aligned_cols=157 Identities=18% Similarity=0.311 Sum_probs=116.4
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD---------- 272 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~---------- 272 (455)
....|.+|++|+|++.+++.|...+.. ...++.||||||||+|||++|+++|+.+...
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 456799999999999998888776641 1346789999999999999999999887542
Q ss_pred -----------eEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhHh
Q 012846 273 -----------IYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLS 335 (455)
Q Consensus 273 -----------~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls 335 (455)
++.++...-..-..++.+..... ...|++|||+|.+.. ..++
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------------~A~N 136 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------------SAFN 136 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------------HHHH
Confidence 23333322122355676665442 457999999997642 2357
Q ss_pred hHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 336 GLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 336 ~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
.||..|+.. ++.+++|++|+.++.|.+++++ |+ .++.|..++.++....++..+...
T Consensus 137 ALLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~ke 193 (725)
T PRK07133 137 ALLKTLEEP----PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKE 193 (725)
T ss_pred HHHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHc
Confidence 788888764 3457888888899999999998 88 489999999999888877655443
No 79
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=5e-14 Score=155.94 Aligned_cols=159 Identities=17% Similarity=0.284 Sum_probs=118.4
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----------- 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----------- 271 (455)
..+.|.+|++|+|++.+++.|...+. . | ..+..||||||+|||||++|+++|+.+.+
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~----~-------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALD----S-------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH----h-------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 45679999999999998888776653 1 1 23467999999999999999999998853
Q ss_pred ---------------ceEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccc
Q 012846 272 ---------------DIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPM 330 (455)
Q Consensus 272 ---------------~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~ 330 (455)
+++.++......-++++++.... ....|+||||+|.+..
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------------- 134 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------------- 134 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH--------------------
Confidence 34445443333345666654322 2567999999998742
Q ss_pred hhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCC
Q 012846 331 QVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH 401 (455)
Q Consensus 331 ~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 401 (455)
...+.||+.|+.. .+.+++|++|++++.|.++|.. |+ .++.|..++.++...+++..+..++.
T Consensus 135 -~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 135 -QGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred -HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 2357888888875 3457888888999999999988 77 68899999999988888887754433
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6.9e-14 Score=148.27 Aligned_cols=157 Identities=16% Similarity=0.304 Sum_probs=115.0
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
...|.+|++++|.+.+++.|...+. . | ..+..|||+||||||||++|+++|+.+..
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~----~-------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALE----T-------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 3568899999999999888776553 1 1 23557999999999999999999998863
Q ss_pred ------------ceEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 272 ------------DIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 272 ------------~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+++.++......-++++.++... ....|++|||+|.+.. ..
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------------~a 135 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------------QS 135 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------------HH
Confidence 45555543323334556665433 2467999999997642 23
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD 400 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 400 (455)
.+.||..|+.. ++.+++|++|+.+..+.++++. |+ ..++|..++.++....++..+..++
T Consensus 136 ~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~eg 195 (546)
T PRK14957 136 FNALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKEN 195 (546)
T ss_pred HHHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcC
Confidence 57888888764 3457777777778989888887 77 7899999999998877777655443
No 81
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.56 E-value=9.1e-14 Score=153.83 Aligned_cols=158 Identities=23% Similarity=0.208 Sum_probs=116.0
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHH----
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSEL---- 287 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L---- 287 (455)
++.|.+++|+.|++.+...... +...+..++|+||||+|||++++++|+.++.+++.++++.+.+...+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4899999999999887644321 22234569999999999999999999999999999998876544333
Q ss_pred -----------HHHHHhcC-CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc---------cc
Q 012846 288 -----------RRVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL---------WS 346 (455)
Q Consensus 288 -----------~~ll~~~~-~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~---------~~ 346 (455)
.+.+.... ...||+|||||.+... . .....+.|+..+|.- ..
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~--~---------------~g~~~~aLlevld~~~~~~~~d~~~~ 458 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSD--M---------------RGDPASALLEVLDPEQNVAFSDHYLE 458 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccc--c---------------CCCHHHHHHHHhccccEEEEeccccc
Confidence 23333332 4568999999988641 1 111246677766631 00
Q ss_pred --CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcC
Q 012846 347 --SCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 347 --~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
..-.++++|+|+|.. .|+|+|+. ||+ .|.++.++.++..+|+++||.
T Consensus 459 ~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 459 VDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 011468999999987 59999999 996 688999999999999999983
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=5.8e-14 Score=149.18 Aligned_cols=157 Identities=15% Similarity=0.319 Sum_probs=116.4
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----------- 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----------- 271 (455)
....|.+|++++|++.+++.+.+.+. . | ..+++|||+||||+|||++|+++|+.+..
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~----~-------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAIL----N-------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 34679999999999999887776542 1 1 23578999999999999999999998742
Q ss_pred -------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchh
Q 012846 272 -------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQV 332 (455)
Q Consensus 272 -------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (455)
+++.++.+....-++++.+..... ...|++|||+|.+-. .
T Consensus 76 C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------------~ 134 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------------S 134 (605)
T ss_pred cHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------------H
Confidence 445555443334456776664332 356999999997632 1
Q ss_pred hHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 333 TLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 333 ~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
..+.||..|+.. ++..++|++|+.+..|.+++++ |+. .++|+.++.++....++..+...
T Consensus 135 A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~ke 194 (605)
T PRK05896 135 AWNALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKE 194 (605)
T ss_pred HHHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHc
Confidence 246788888764 3457888888889999999998 774 79999999999888777766444
No 83
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.6e-13 Score=140.38 Aligned_cols=159 Identities=17% Similarity=0.319 Sum_probs=115.0
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----------- 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----------- 271 (455)
...+|.+|++++|.+..++.+.+.+.. | ..+.++|||||||+|||++++++|+.+..
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 456799999999999988877766531 1 23568999999999999999999998743
Q ss_pred -ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc
Q 012846 272 -DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL 344 (455)
Q Consensus 272 -~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~ 344 (455)
.++.++.........+++++.... .+.||+|||+|.+.. ..++.|+..++..
T Consensus 77 ~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------------~~~~~ll~~le~~ 135 (367)
T PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------------AAFNAFLKTLEEP 135 (367)
T ss_pred cceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------------HHHHHHHHHHhCC
Confidence 233344333333467777776432 457999999996632 2356777777653
Q ss_pred ccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCC
Q 012846 345 WSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH 401 (455)
Q Consensus 345 ~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 401 (455)
+...++|++|+.+..+.+++.+ |+ ..++++.++.++...++...+...+.
T Consensus 136 ----~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~ 185 (367)
T PRK14970 136 ----PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGI 185 (367)
T ss_pred ----CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCC
Confidence 2346777788888999999987 66 46899999999988877776554443
No 84
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=9e-14 Score=148.66 Aligned_cols=160 Identities=20% Similarity=0.334 Sum_probs=118.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
...|.+|++|+|++.+++.|...+. . | ..+..||||||+|||||++|+++|+.++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~----~-------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD----A-------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 4578999999999998888776653 1 1 23567999999999999999999988753
Q ss_pred --------------ceEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccch
Q 012846 272 --------------DIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQ 331 (455)
Q Consensus 272 --------------~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (455)
+++.++.+....-+.++++.... ...-|++|||+|.+..
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~--------------------- 132 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT--------------------- 132 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------------
Confidence 34445544333345566554332 2457999999997742
Q ss_pred hhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc
Q 012846 332 VTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL 403 (455)
Q Consensus 332 ~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 403 (455)
...+.||..|+.. .+.+++|++|+.++.|.+++.. |+ .+++|..++.++....++..+..++...
T Consensus 133 ~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i 197 (584)
T PRK14952 133 AGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVV 197 (584)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 2357788888764 3458888888999999999988 75 6899999999998888887776554433
No 85
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.55 E-value=6.7e-14 Score=149.32 Aligned_cols=172 Identities=19% Similarity=0.283 Sum_probs=115.7
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCce
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDI 273 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~ 273 (455)
...|.+|++++|.+...+.+...+. .+.+..+||+||||||||++|+++.+++ +.++
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 4678999999999988877764321 1234689999999999999999998653 3678
Q ss_pred EEeeccccC-ChHHHH-HH--------------------------HHhcCCceEEEEeccccccccccccCCCccccccC
Q 012846 274 YDLELSAVH-SNSELR-RV--------------------------LLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLK 325 (455)
Q Consensus 274 ~~l~~~~~~-~~~~L~-~l--------------------------l~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~ 325 (455)
+.++|+... ++..+. .+ ......+++|||||||.+..
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~--------------- 189 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP--------------- 189 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH---------------
Confidence 899986421 111111 00 01122468999999998754
Q ss_pred CCccchhhHhhHhhhhhcc--------cc-----------------CCCCceEEEEecCCCCCCCccccCCCceeeEEEe
Q 012846 326 PLRPMQVTLSGLLNFLDGL--------WS-----------------SCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYM 380 (455)
Q Consensus 326 ~~~~~~~~ls~LL~~lDg~--------~~-----------------~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~ 380 (455)
...+.||..|+.- .+ .+.+-++|++|||.|+.|+|++.+ |+ ..|.|
T Consensus 190 ------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f 260 (531)
T TIGR02902 190 ------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFF 260 (531)
T ss_pred ------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeC
Confidence 1123444444210 00 011236777888999999999998 88 57889
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhh
Q 012846 381 SYCTPCGFDTLAANYLGITDHPLIYEIKEIMQ 412 (455)
Q Consensus 381 ~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~ 412 (455)
+.++.+++..|+++.+...+..+.++.-+++.
T Consensus 261 ~pL~~eei~~Il~~~a~k~~i~is~~al~~I~ 292 (531)
T TIGR02902 261 RPLLDEEIKEIAKNAAEKIGINLEKHALELIV 292 (531)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 99999999999999887655544444433433
No 86
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.55 E-value=1.5e-14 Score=139.29 Aligned_cols=162 Identities=20% Similarity=0.275 Sum_probs=112.9
Q ss_pred eecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------ceEE
Q 012846 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------DIYD 275 (455)
Q Consensus 202 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------~~~~ 275 (455)
.+...|.+|++++|++.+.+.+.+.+.. .--..||||||||||||+.|.|+|..+.. .+..
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 4568899999999999999988887653 11236999999999999999999999865 2233
Q ss_pred eeccccCCh----------HHHHHHHHhc-C----CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhh
Q 012846 276 LELSAVHSN----------SELRRVLLST-G----NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNF 340 (455)
Q Consensus 276 l~~~~~~~~----------~~L~~ll~~~-~----~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 340 (455)
++.++...- +.+....... . ..-|++|||.|.+.. ...+.|.+.
T Consensus 94 lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------------daq~aLrr~ 152 (346)
T KOG0989|consen 94 LNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------------DAQAALRRT 152 (346)
T ss_pred hcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH---------------------HHHHHHHHH
Confidence 344433211 1222111100 1 125999999998743 345778888
Q ss_pred hhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH
Q 012846 341 LDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI 404 (455)
Q Consensus 341 lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~ 404 (455)
||... ....+|+.||.++.|.+.+.. |+. .+.|+....+....-++.....++.+..
T Consensus 153 mE~~s----~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d 209 (346)
T KOG0989|consen 153 MEDFS----RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDID 209 (346)
T ss_pred Hhccc----cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCC
Confidence 88752 347888999999999999998 884 6677777776666666655555554444
No 87
>PRK06893 DNA replication initiation factor; Validated
Probab=99.55 E-value=1e-13 Score=132.77 Aligned_cols=167 Identities=13% Similarity=0.164 Sum_probs=102.5
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecc
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELS 279 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~ 279 (455)
....+.+||++++.+... ....+..- . .....+.++||||||||||+|++|+|+++ +.....++..
T Consensus 8 ~~~~~~~fd~f~~~~~~~--~~~~~~~~------~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 8 HQIDDETLDNFYADNNLL--LLDSLRKN------F---IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCCcccccccccCChHH--HHHHHHHH------h---hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 456677999999765321 22222111 1 11123457999999999999999999986 3455555554
Q ss_pred ccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecC
Q 012846 280 AVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTN 359 (455)
Q Consensus 280 ~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN 359 (455)
... ....+++....+..+|+||||+.+.... ... ..|++.++..... +..++|+|+|
T Consensus 77 ~~~--~~~~~~~~~~~~~dlLilDDi~~~~~~~----------------~~~---~~l~~l~n~~~~~--~~~illits~ 133 (229)
T PRK06893 77 KSQ--YFSPAVLENLEQQDLVCLDDLQAVIGNE----------------EWE---LAIFDLFNRIKEQ--GKTLLLISAD 133 (229)
T ss_pred Hhh--hhhHHHHhhcccCCEEEEeChhhhcCCh----------------HHH---HHHHHHHHHHHHc--CCcEEEEeCC
Confidence 221 1122445555677899999999875310 111 2344444444332 2345555544
Q ss_pred -CCCCCC---ccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc
Q 012846 360 -HKDRLD---PAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL 403 (455)
Q Consensus 360 -~~~~LD---~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 403 (455)
.|..++ |.|.++.+....+.++.|+.+++.++++......+..+
T Consensus 134 ~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l 181 (229)
T PRK06893 134 CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL 181 (229)
T ss_pred CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 566554 88888444568899999999999999997764433333
No 88
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=2.6e-13 Score=142.02 Aligned_cols=156 Identities=15% Similarity=0.231 Sum_probs=113.1
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
...|.+|++|+|.+.+++.+.+.+. . ...+..+|||||||+|||++|+++|+.+..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~----~--------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALR----F--------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 3578999999999998887766653 1 134578999999999999999999998743
Q ss_pred -------------ceEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchh
Q 012846 272 -------------DIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQV 332 (455)
Q Consensus 272 -------------~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (455)
+++.++......-+.++.+.... ..+.|++|||+|.+.. .
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------------~ 136 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------------E 136 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------------H
Confidence 34444433222234555443222 3578999999997742 1
Q ss_pred hHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 333 TLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 333 ~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
..+.|+..|+.. .+..++|++||++..|.+++.+ |+ ..++++.++.++....++..+...
T Consensus 137 ~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~e 196 (451)
T PRK06305 137 AFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQE 196 (451)
T ss_pred HHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 246788888763 2457788888999999999988 77 478999999999887777665443
No 89
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.55 E-value=2.4e-13 Score=136.97 Aligned_cols=160 Identities=13% Similarity=0.236 Sum_probs=107.7
Q ss_pred eecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC-----CceEEe
Q 012846 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN-----FDIYDL 276 (455)
Q Consensus 202 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~-----~~~~~l 276 (455)
+....|.+|++++|.+.+++.+...+. . +. ..++|||||||||||++|+++|+++. .++..+
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVERLSRAVD----S-------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHHHHHHHHh----C-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 356789999999999988887766543 1 11 13699999999999999999999884 345667
Q ss_pred eccccCC--------------------------hHHHHHHHHhc-------CCceEEEEeccccccccccccCCCccccc
Q 012846 277 ELSAVHS--------------------------NSELRRVLLST-------GNRSILVVEDIDCSLELEDRQAQPTTVNV 323 (455)
Q Consensus 277 ~~~~~~~--------------------------~~~L~~ll~~~-------~~~sIlliDeiD~l~~~~~~~~~~~~~~~ 323 (455)
++.++.. ...++.++... ..+.+|+|||+|.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------------- 139 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------------- 139 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-------------
Confidence 7654321 11222222221 2356999999997632
Q ss_pred cCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 012846 324 LKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP 402 (455)
Q Consensus 324 ~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~ 402 (455)
.. ...|+..++... +...+|++|+++..+.++|.+ |+ ..+.++.|+.++...+++..+...+..
T Consensus 140 -----~~---~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~ 203 (337)
T PRK12402 140 -----DA---QQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVD 203 (337)
T ss_pred -----HH---HHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 11 234555555432 224466677777788888877 66 578999999999998988876654433
No 90
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=9.5e-14 Score=149.43 Aligned_cols=157 Identities=15% Similarity=0.261 Sum_probs=117.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
...|.+|++|+|.+.+++.|...+.. | ..+..||||||+|+|||++|+++|+.++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 45689999999999998888776541 1 23678999999999999999999999853
Q ss_pred ------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 272 ------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 272 ------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+++.++......-++++.+..... ..-|++|||+|.+.. ..
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------------~a 135 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------------NA 135 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------------HH
Confidence 244455433333456666665432 346999999997642 23
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD 400 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 400 (455)
.+.||..|+.. .+.+++|++||.++.|.++++. |+ .++.|..++.++....++..+..++
T Consensus 136 ~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 136 FNALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred HHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhC
Confidence 57888888764 3458888899999999999998 77 5889999999888877776665543
No 91
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.3e-13 Score=147.33 Aligned_cols=158 Identities=16% Similarity=0.318 Sum_probs=115.2
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD---------- 272 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~---------- 272 (455)
....|.+|++|+|++.+++.|...+. . | ..+..|||+||||||||++|+++|+.+...
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~----~-------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQ----E-------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 34679999999999988877766553 1 1 224689999999999999999999988652
Q ss_pred --------------eEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchh
Q 012846 273 --------------IYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQV 332 (455)
Q Consensus 273 --------------~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (455)
++.++...-..-+.++.+.... ....||+|||+|.+.. .
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------------~ 134 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR---------------------E 134 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---------------------H
Confidence 4555543222234455443222 2467999999998742 2
Q ss_pred hHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC
Q 012846 333 TLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD 400 (455)
Q Consensus 333 ~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 400 (455)
.++.||..|+.. ....++|++||.+..+.+.+++ |+ .+|+|+.++.++....++..+..++
T Consensus 135 a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~eg 195 (624)
T PRK14959 135 AFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREG 195 (624)
T ss_pred HHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcC
Confidence 357788888763 2458888899999999999888 87 4789999999998888877665443
No 92
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=3.6e-13 Score=144.69 Aligned_cols=161 Identities=15% Similarity=0.292 Sum_probs=118.8
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD---------- 272 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~---------- 272 (455)
....|.+|++|+|++.+++.|.+.+.. | ..+.++|||||+|+|||++|+++|+.+.+.
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 457899999999999999888775531 2 235689999999999999999999988643
Q ss_pred -------------------eEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCC
Q 012846 273 -------------------IYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPL 327 (455)
Q Consensus 273 -------------------~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~ 327 (455)
++.++......-++++.++.... ...|++|||+|.+..
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~----------------- 146 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST----------------- 146 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------------
Confidence 22333222223456777765442 467999999997742
Q ss_pred ccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc
Q 012846 328 RPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL 403 (455)
Q Consensus 328 ~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 403 (455)
...+.||..|+.. .+..++|++|+.++.+.+.+.. |+ ..+.|..++.++....++..+..++...
T Consensus 147 ----~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i 211 (598)
T PRK09111 147 ----AAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEV 211 (598)
T ss_pred ----HHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 2357788888764 3457788888888889999887 77 5799999999998888888766554333
No 93
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.52 E-value=9.4e-13 Score=123.01 Aligned_cols=210 Identities=16% Similarity=0.211 Sum_probs=157.0
Q ss_pred CceeeeecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCce
Q 012846 197 DSWHWITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDI 273 (455)
Q Consensus 197 ~~~~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~ 273 (455)
+...++...++..+.+|+|.+.+|+.+.+....|+.. .| ...+||+|..|||||+|++|+-++. +..+
T Consensus 46 ~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~p-ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL 116 (287)
T COG2607 46 GYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEG--------LP-ANNVLLWGARGTGKSSLVKALLNEYADEGLRL 116 (287)
T ss_pred CcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------Cc-ccceEEecCCCCChHHHHHHHHHHHHhcCCeE
Confidence 3456677777889999999999999999999999764 23 4689999999999999999997765 5778
Q ss_pred EEeeccccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceE
Q 012846 274 YDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERI 353 (455)
Q Consensus 274 ~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~i 353 (455)
+.++-.++.+-..|...+...+.+-|||+||.- ++ ........|-..|||-....+.+|+
T Consensus 117 VEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLS--Fe------------------~gd~~yK~LKs~LeG~ve~rP~NVl 176 (287)
T COG2607 117 VEVDKEDLATLPDLVELLRARPEKFILFCDDLS--FE------------------EGDDAYKALKSALEGGVEGRPANVL 176 (287)
T ss_pred EEEcHHHHhhHHHHHHHHhcCCceEEEEecCCC--CC------------------CCchHHHHHHHHhcCCcccCCCeEE
Confidence 999999998889999999999999999999974 22 2223456677889988887888999
Q ss_pred EEEecCCCCCCCcccc--------------------CCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHH-HHHHHhh
Q 012846 354 IVFTTNHKDRLDPAVL--------------------RPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIY-EIKEIMQ 412 (455)
Q Consensus 354 iI~tTN~~~~LD~aLl--------------------rpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-~i~~l~~ 412 (455)
|.+|+|+-..|+.-+. =..||..-+.|+.|+.++..+|+..|....+.+..+ ++..
T Consensus 177 ~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~--- 253 (287)
T COG2607 177 FYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHA--- 253 (287)
T ss_pred EEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHH---
Confidence 9999998665542221 134899999999999999999999988655444321 1111
Q ss_pred cCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 012846 413 NVRVTPADVGEQLLKNEDPEIALKGLLEFLNA 444 (455)
Q Consensus 413 ~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~ 444 (455)
.-++....+++....+...++..+..
T Consensus 254 ------eAl~WAt~rg~RSGR~A~QF~~~~~g 279 (287)
T COG2607 254 ------EALQWATTRGGRSGRVAWQFIRDLAG 279 (287)
T ss_pred ------HHHHHHHhcCCCccHhHHHHHHHHHh
Confidence 11233344555555555556665543
No 94
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.52 E-value=1.4e-13 Score=141.89 Aligned_cols=220 Identities=20% Similarity=0.228 Sum_probs=130.2
Q ss_pred cc-cccccHHHHHHHHHHHHHHHhchhHHhhh--CC-CCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC--
Q 012846 210 FD-TLAMEAELKKMIIEDLERFVKRKDYYRRV--GK-AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-- 283 (455)
Q Consensus 210 f~-~l~g~~~~k~~i~~~l~~~~~~~~~y~~~--g~-~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~-- 283 (455)
++ .|+|.+..|+.+...+......-...... +. ..+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 54 48999999998876664432221100000 11 13568999999999999999999999999999999887642
Q ss_pred ------hHHHHHHHHh------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcccc----C
Q 012846 284 ------NSELRRVLLS------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWS----S 347 (455)
Q Consensus 284 ------~~~L~~ll~~------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~----~ 347 (455)
+..+..++.. ...++||||||||.+..... ..+...+. ....+.+.||..|||-.. .
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~--~~~~~~d~-----s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSE--NPSITRDV-----SGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccC--CCCcCCCc-----ccHHHHHHHHHHHhcCeEEeCCC
Confidence 1223333322 23689999999999975311 11100000 112456889999987421 1
Q ss_pred C-----CCceEEEEecCCCC----------------------------------------------------CCCccccC
Q 012846 348 C-----GDERIIVFTTNHKD----------------------------------------------------RLDPAVLR 370 (455)
Q Consensus 348 ~-----~~~~iiI~tTN~~~----------------------------------------------------~LD~aLlr 370 (455)
. ..+.++|.|+|-.. -+.|+|+
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl- 300 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI- 300 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh-
Confidence 1 12346666766400 0234444
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC----CCCHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012846 371 PGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV----RVTPADVGEQLLKNEDPEIALKGLLEFL 442 (455)
Q Consensus 371 pgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~----~~tpa~i~~~l~~~~~~~~al~~l~~~l 442 (455)
||+|..+.|..++.++...|+...+. .+..++..++... .+|++-+..+.-+..+.+...+.|...+
T Consensus 301 -gRld~iv~f~~L~~~~L~~Il~~~~~----~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrrii 371 (412)
T PRK05342 301 -GRLPVVATLEELDEEALVRILTEPKN----ALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSIL 371 (412)
T ss_pred -CCCCeeeecCCCCHHHHHHHHHHHHH----HHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHH
Confidence 49999999999999999988874331 1223344443322 3566555444443334333333333333
No 95
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.52 E-value=1.9e-13 Score=133.48 Aligned_cols=145 Identities=22% Similarity=0.245 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHH----------
Q 012846 219 LKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELR---------- 288 (455)
Q Consensus 219 ~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~---------- 288 (455)
..+++.+.+..++.. ++.+||+||||||||++|+++|+.++.+++.+++..-....++.
T Consensus 6 ~~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~ 74 (262)
T TIGR02640 6 AVKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKK 74 (262)
T ss_pred HHHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhh
Confidence 345555666555443 45799999999999999999999999999999876533222110
Q ss_pred -----------------------HHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc
Q 012846 289 -----------------------RVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW 345 (455)
Q Consensus 289 -----------------------~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~ 345 (455)
.++.....+.+|+|||||.+-+ .+.+.|+..|+.-.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~---------------------~~q~~Ll~~Le~~~ 133 (262)
T TIGR02640 75 VHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKP---------------------ETNNVLLSVFEEGV 133 (262)
T ss_pred HHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCH---------------------HHHHHHHHHhcCCe
Confidence 1122234568999999997643 23455666554210
Q ss_pred -cC-----------CCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 346 -SS-----------CGDERIIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 346 -~~-----------~~~~~iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
.. ...+..||+|+|... .++++|++ || ..+.+++|+.++-.+|++...+.
T Consensus 134 ~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~ 200 (262)
T TIGR02640 134 LELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDV 200 (262)
T ss_pred EEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCC
Confidence 00 112456889999753 56899999 98 78999999999999999887643
No 96
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.51 E-value=1.4e-13 Score=130.94 Aligned_cols=183 Identities=14% Similarity=0.150 Sum_probs=110.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccc
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSA 280 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~ 280 (455)
...+.+|++++.. ..+.+++.+..+... ..+..++|+||||||||++++++++++ +.+++.+++..
T Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 8 LPDDPTFDNFYAG--GNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCCchhhcCcCcC--CcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 4455678888732 223344444433221 225689999999999999999999876 46788888877
Q ss_pred cCChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecC-
Q 012846 281 VHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTN- 359 (455)
Q Consensus 281 ~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN- 359 (455)
+.. ....++.......+|+|||+|.+.. .. .....|...++..... +..+ |+|++
T Consensus 77 ~~~--~~~~~~~~~~~~~lLvIDdi~~l~~------------------~~-~~~~~L~~~l~~~~~~--~~~i-Iits~~ 132 (226)
T TIGR03420 77 LAQ--ADPEVLEGLEQADLVCLDDVEAIAG------------------QP-EWQEALFHLYNRVREA--GGRL-LIAGRA 132 (226)
T ss_pred HHH--hHHHHHhhcccCCEEEEeChhhhcC------------------Ch-HHHHHHHHHHHHHHHc--CCeE-EEECCC
Confidence 653 2234444445567999999997742 11 1123444444443222 1244 44554
Q ss_pred CCCCCC---ccccCCCce--eeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHH-HHHHhhcCCCCHHHHHH
Q 012846 360 HKDRLD---PAVLRPGRM--DVHIYMSYCTPCGFDTLAANYLGITDHPLIYE-IKEIMQNVRVTPADVGE 423 (455)
Q Consensus 360 ~~~~LD---~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~-i~~l~~~~~~tpa~i~~ 423 (455)
.+..++ +.|.+ |+ ..+|.+|.|+.+++..+++.+.......+.++ +..++....-++.++.+
T Consensus 133 ~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~ 200 (226)
T TIGR03420 133 APAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMA 200 (226)
T ss_pred ChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHH
Confidence 444432 66776 65 57899999999999999988765443344333 33333333334444433
No 97
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.8e-13 Score=141.70 Aligned_cols=159 Identities=16% Similarity=0.306 Sum_probs=113.9
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
...|.+|++++|++.+.+.+...+.. ...+..||||||||+|||++|+++|+.++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 45788999999999998877766531 123567999999999999999999998753
Q ss_pred ------------ceEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 272 ------------DIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 272 ------------~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+++.++.+....-+.++.+.... ..+.|++|||+|.+.. ..
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------------~a 135 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------------EA 135 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------------HH
Confidence 23444443322334455544332 2457999999997632 22
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP 402 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~ 402 (455)
.+.||..++.. ....++|++|+.++.+++++.+ |+. .+.++.++.++....++..+...+..
T Consensus 136 ~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 136 FNALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred HHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46677777653 3346777778888899999887 774 79999999999998888876654433
No 98
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.51 E-value=1.7e-13 Score=150.67 Aligned_cols=197 Identities=15% Similarity=0.268 Sum_probs=129.7
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHH
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVL 291 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll 291 (455)
.|+|+++.++.|.+.+......- ...++| ...+||+||||||||++|+++|..++.+++.+++++......+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~kp-~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEHKP-VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCCCC-cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 47899999998888876442210 000111 23589999999999999999999999999999998875432222222
Q ss_pred ---------------H---hcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhh-cccc-CCC--
Q 012846 292 ---------------L---STGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD-GLWS-SCG-- 349 (455)
Q Consensus 292 ---------------~---~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD-g~~~-~~~-- 349 (455)
. .....|||||||||.+.+ ...+.||..|| |... ..|
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------------~v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------------DVFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------------HHHHHHHHHHhcCeeecCCCce
Confidence 1 112458999999998743 24577777777 3211 111
Q ss_pred ---CceEEEEecCCC-------------------------CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCC
Q 012846 350 ---DERIIVFTTNHK-------------------------DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH 401 (455)
Q Consensus 350 ---~~~iiI~tTN~~-------------------------~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 401 (455)
.+.|||+|||.- ..+.|+|+. |+|.+|.|+..+.++..+|+..++..
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~--- 668 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE--- 668 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH---
Confidence 357899999921 125677777 99999999999999999999887732
Q ss_pred CcHHHHHHHhh----cCCCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012846 402 PLIYEIKEIMQ----NVRVTPADVGEQLLKNEDPEIALKGLLEFLN 443 (455)
Q Consensus 402 ~l~~~i~~l~~----~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~ 443 (455)
+...+. ...++++-+..++....++....+.+...++
T Consensus 669 -----~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 669 -----LQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred -----HHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 222222 2346666665555444454444444444443
No 99
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=7.2e-13 Score=143.27 Aligned_cols=157 Identities=17% Similarity=0.278 Sum_probs=115.0
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----------- 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----------- 271 (455)
....|.+|++++|.+.+++.|...+.. | ....+||||||||||||++|+++|+.+..
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 346788999999999998887766542 1 12458999999999999999999999865
Q ss_pred ---------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccc
Q 012846 272 ---------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPM 330 (455)
Q Consensus 272 ---------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~ 330 (455)
+++.++......-+.+++++..+. ...|++|||+|.+..
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-------------------- 135 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-------------------- 135 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH--------------------
Confidence 344444433233467777775543 356999999997732
Q ss_pred hhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 331 QVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 331 ~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
...+.||..|+.. .+..++|++|++++.+.+++.+ |+ ..++|+.++.++....+......+
T Consensus 136 -~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~ke 196 (620)
T PRK14948 136 -AAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKE 196 (620)
T ss_pred -HHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHh
Confidence 2357888888853 3457888888889999999987 77 578898888887776666554443
No 100
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.4e-13 Score=140.49 Aligned_cols=156 Identities=13% Similarity=0.268 Sum_probs=111.9
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc-----------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD----------- 272 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~----------- 272 (455)
...|.+|++|+|++.+++.|...+. . | ..+..||||||||+|||++|.++|+.+...
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~----~-------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR----M-------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH----h-------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 4678999999999999887766553 1 1 235679999999999999999999988652
Q ss_pred ---------------------eEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccC
Q 012846 273 ---------------------IYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLK 325 (455)
Q Consensus 273 ---------------------~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~ 325 (455)
++.++......-++++++..... ...|++|||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------
Confidence 33333322223456776655542 457999999997742
Q ss_pred CCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 326 PLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 326 ~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
...+.|+..++.. .+..++|++|+.+..+-+++.+ |+. .++|+.++.++....++..+...
T Consensus 142 ------~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~ 202 (397)
T PRK14955 142 ------AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAE 202 (397)
T ss_pred ------HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHc
Confidence 1245677777643 2346677777778888888887 764 78999999988887777766443
No 101
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=6.7e-13 Score=140.18 Aligned_cols=159 Identities=18% Similarity=0.273 Sum_probs=118.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC-------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN------------- 270 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~------------- 270 (455)
...|.+|++|+|++.+++.+...+. . | ..+..||||||||+|||++|+++|+.+.
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~----~-------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALD----N-------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----c-------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 4678999999999999888876653 1 1 3466899999999999999999999873
Q ss_pred -----------CceEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 271 -----------FDIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 271 -----------~~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
.+++.++.+.-..-+.++.++... ...-|++|||+|.+.. ..
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------------~A 133 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------------EA 133 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------------HH
Confidence 235555543322346777777553 2346999999997632 33
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP 402 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~ 402 (455)
.+.||..|+.. ++...+|++|+.+..|.+++.. |+ .+++|..++.++....++..+..++..
T Consensus 134 ~NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 134 FNALLKTLEEP----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred HHHHHHHHhhc----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 57788888764 2346777788888999999998 86 689999999999888887766655433
No 102
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.50 E-value=5.5e-13 Score=136.97 Aligned_cols=220 Identities=17% Similarity=0.239 Sum_probs=132.7
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhh----CCC-CCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC---
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRV----GKA-WKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS--- 283 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~----g~~-~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~--- 283 (455)
.|+|+++.|+.+...+....+.-...... +.. .+.++||+||||||||++|+++|..++.++..++++.+..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 36899999998877664332221000000 111 1357999999999999999999999999999888776531
Q ss_pred -----hHHHHHHHHh------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC----C
Q 012846 284 -----NSELRRVLLS------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS----C 348 (455)
Q Consensus 284 -----~~~L~~ll~~------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~----~ 348 (455)
+..+..++.. ...++||||||||.+...... .+...+. ......+.||..|||.... .
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~--~s~~~dv-----sg~~vq~~LL~iLeG~~~~v~~~~ 230 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSEN--PSITRDV-----SGEGVQQALLKIIEGTVANVPPQG 230 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcc--ccccccc-----cchhHHHHHHHHhhccceecccCC
Confidence 1234444432 236789999999988753211 1110000 1124567888888876421 1
Q ss_pred -----CCceEEEEecCCC---------------------------C-----------------------CCCccccCCCc
Q 012846 349 -----GDERIIVFTTNHK---------------------------D-----------------------RLDPAVLRPGR 373 (455)
Q Consensus 349 -----~~~~iiI~tTN~~---------------------------~-----------------------~LD~aLlrpgR 373 (455)
..+.++|+|+|-. + -+.|+|+- |
T Consensus 231 gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--R 308 (413)
T TIGR00382 231 GRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--R 308 (413)
T ss_pred CccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--C
Confidence 1346888888850 0 02355554 9
Q ss_pred eeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhc----CCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 012846 374 MDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQN----VRVTPADVGEQLLKNEDPEIALKGLLEFLNA 444 (455)
Q Consensus 374 ~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~----~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~ 444 (455)
+|..+.|...+.++..+|+..-+. .+..++..++.. ..+|++-+..+.-+..+++...+.|...+++
T Consensus 309 ld~Iv~f~pL~~~~L~~Il~~~~n----~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~ 379 (413)
T TIGR00382 309 LPVIATLEKLDEEALIAILTKPKN----ALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEG 379 (413)
T ss_pred CCeEeecCCCCHHHHHHHHHHHHH----HHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHH
Confidence 999999999999999888875431 123444444422 2356666655554444554444444444443
No 103
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.5e-13 Score=141.88 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=125.4
Q ss_pred CCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC------ChHHHHHHHHhcC--CceEEEEecccccccccc
Q 012846 242 KAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH------SNSELRRVLLSTG--NRSILVVEDIDCSLELED 313 (455)
Q Consensus 242 ~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~------~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~ 313 (455)
+.....+||+|+||||||+++++.|.++|.+++.++|.++. ++..+...|..+. .|+||||-++|.+.- +
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i--d 505 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI--D 505 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee--c
Confidence 33445699999999999999999999999999999998885 3567778887765 799999999998862 2
Q ss_pred ccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 012846 314 RQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAA 393 (455)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~ 393 (455)
+.+... . .-...+..++. +|..... ...+|+|+||+..+.+++.+.+ -|-..|.+|.|++++|.++++
T Consensus 506 ~dgged----~----rl~~~i~~~ls-~e~~~~~-~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq 573 (953)
T KOG0736|consen 506 QDGGED----A----RLLKVIRHLLS-NEDFKFS-CPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQ 573 (953)
T ss_pred CCCchh----H----HHHHHHHHHHh-cccccCC-CCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHH
Confidence 222100 0 11222333333 3333322 3469999999999999999988 788899999999999999999
Q ss_pred HHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 394 NYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 394 ~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
.|+......-......++... +++.+++..+..
T Consensus 574 ~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 574 WYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVA 607 (953)
T ss_pred HHHhccccchHHHHHHHHHhcCCCCHHHHHHHhc
Confidence 999765433333445555443 588888866543
No 104
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=5.5e-13 Score=142.64 Aligned_cols=157 Identities=15% Similarity=0.280 Sum_probs=114.9
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC------------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------ 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------ 271 (455)
..+|.+|++|+|++.+++.+...+.. | ..+..||||||||+|||++|+++|+.+..
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 35689999999999999887776641 1 23567999999999999999999998864
Q ss_pred ------------ceEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 272 ------------DIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 272 ------------~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+++.++...-..-+.++++.... ...-|++|||+|.+.. ..
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------------~a 135 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------------SA 135 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------------HH
Confidence 23444433222335666665332 2557999999997632 23
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD 400 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 400 (455)
++.||..++.. +...++|++|+.+..|.+++.. |+. .++|..++.++....++..+...+
T Consensus 136 ~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~eg 195 (563)
T PRK06647 136 FNALLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQ 195 (563)
T ss_pred HHHHHHhhccC----CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcC
Confidence 57788887753 3457888888889999999988 774 689999999998888877664443
No 105
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.6e-13 Score=142.54 Aligned_cols=170 Identities=16% Similarity=0.236 Sum_probs=118.4
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC----ceEEeeccccCCh--
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----DIYDLELSAVHSN-- 284 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----~~~~l~~~~~~~~-- 284 (455)
.+++-.+..|+...++...+ ......+||+||+|+|||.|++++++++.. ++..++|+.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45566666666655533222 233457999999999999999999998754 4556788887632
Q ss_pred HHHHH----HHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec
Q 012846 285 SELRR----VLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358 (455)
Q Consensus 285 ~~L~~----ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT 358 (455)
+.+.+ +|..+ -.|+||++||+|+++...+.. .++.. .....+..+||.+-......+..+.+|+|.
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e--~~q~~------~~~~rla~flnqvi~~y~~~~~~ia~Iat~ 548 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNE--NGQDG------VVSERLAAFLNQVIKIYLKRNRKIAVIATG 548 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCccc--CCcch------HHHHHHHHHHHHHHHHHHccCcEEEEEEec
Confidence 33443 34333 279999999999998621111 11100 233445666654422222233457889999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 359 NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 359 N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
+..+.|+|-|..|++|+.++.+|.|...+|.+|++..+...
T Consensus 549 qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735|consen 549 QELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred hhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988654
No 106
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.49 E-value=5.3e-13 Score=149.28 Aligned_cols=157 Identities=16% Similarity=0.197 Sum_probs=112.1
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceEE
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYD 275 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~ 275 (455)
.|..++.++|.+....++++.+.. ..+.+++|+||||||||++|+.+|..+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 567899999998876666654421 235689999999999999999999876 356788
Q ss_pred eeccccCC--------hHHHHHHHHhcC---CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc
Q 012846 276 LELSAVHS--------NSELRRVLLSTG---NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL 344 (455)
Q Consensus 276 l~~~~~~~--------~~~L~~ll~~~~---~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~ 344 (455)
++++.+.. +..++++|.... .++|||||||+.+...++..+ . ...-+-|+..+.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~--~-----------~d~~n~Lkp~l~-- 313 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG--Q-----------GDAANLLKPALA-- 313 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc--c-----------ccHHHHhhHHhh--
Confidence 88776542 257888887653 579999999999976322111 0 001122333332
Q ss_pred ccCCCCceEEEEecCCC-----CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcC
Q 012846 345 WSSCGDERIIVFTTNHK-----DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 345 ~~~~~~~~iiI~tTN~~-----~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
.+++.+|+||+.. -.+||||.| ||. .|.++.|+.++...|++.+..
T Consensus 314 ----~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 314 ----RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred ----CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 2468888888764 348999999 995 799999999999999765543
No 107
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.48 E-value=1.5e-13 Score=154.01 Aligned_cols=158 Identities=18% Similarity=0.242 Sum_probs=115.0
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceEE
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYD 275 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~ 275 (455)
.|..++.++|.+...+++++.+.. ..+.+++|+||||||||++++++|..+ +.+++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 456799999998877777665531 235689999999999999999999987 788999
Q ss_pred eeccccCC--------hHHHHHHHHhc---CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc
Q 012846 276 LELSAVHS--------NSELRRVLLST---GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL 344 (455)
Q Consensus 276 l~~~~~~~--------~~~L~~ll~~~---~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~ 344 (455)
++++.+.. +..++++|... ..++||||||||.+.......+ .. +.. +-|...+
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~--~~--------d~~---~~lkp~l--- 303 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG--AM--------DAG---NMLKPAL--- 303 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc--ch--------hHH---HHhcchh---
Confidence 88877542 24677787653 3689999999999975322111 00 111 1122222
Q ss_pred ccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 345 WSSCGDERIIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 345 ~~~~~~~~iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
. .+++.+|++|+..+ .+|+||.| ||+ .|.++.|+.+++..+++.....
T Consensus 304 -~--~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 304 -A--RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred -h--cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 1 24688899888776 48999999 997 5889999999999999876543
No 108
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=9.1e-13 Score=141.89 Aligned_cols=156 Identities=13% Similarity=0.275 Sum_probs=113.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc-----------
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD----------- 272 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~----------- 272 (455)
...|.+|++|+|++.+++.|...+. . ...+.+|||+||||||||++|+++|+.+...
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~----~--------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR----M--------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 3568999999999998887766442 1 2346689999999999999999999988652
Q ss_pred ---------------------eEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccC
Q 012846 273 ---------------------IYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLK 325 (455)
Q Consensus 273 ---------------------~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~ 325 (455)
+..++......-++++.+.... ...-|++|||+|.+..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------- 141 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------- 141 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------
Confidence 2233332222346777766554 2457999999997742
Q ss_pred CCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 326 PLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 326 ~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
...+.||..|+.. .+..++|++|+++..|.+++.+ |+ ..++|..++.++....++..+...
T Consensus 142 ------~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~e 202 (620)
T PRK14954 142 ------AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAE 202 (620)
T ss_pred ------HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHc
Confidence 1246788888764 2346777777888999999987 66 689999999998887777655443
No 109
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=8.8e-13 Score=142.49 Aligned_cols=158 Identities=15% Similarity=0.282 Sum_probs=114.0
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----------- 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----------- 271 (455)
....|.+|++|+|++.+++.|...+.. | ..+..||||||||+|||++++++|+.++.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 346789999999999999887665531 1 23457999999999999999999988742
Q ss_pred --------------ceEEeeccccCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccch
Q 012846 272 --------------DIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQ 331 (455)
Q Consensus 272 --------------~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (455)
+++.++.+....-+.++++.... ....|++|||+|.+..
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------------------- 134 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST--------------------- 134 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------------
Confidence 23444443333445666665432 2467999999997632
Q ss_pred hhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC
Q 012846 332 VTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD 400 (455)
Q Consensus 332 ~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 400 (455)
..++.||..|+.. ....++|++|+.++.+.+.+.+ |+ ..+.|..++..+...+++..+...+
T Consensus 135 ~a~naLLk~LEep----p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~eg 196 (585)
T PRK14950 135 AAFNALLKTLEEP----PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEG 196 (585)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 2356788888764 2347777788888888888887 76 4688999999988887777665443
No 110
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.47 E-value=1.8e-13 Score=150.58 Aligned_cols=155 Identities=21% Similarity=0.262 Sum_probs=108.8
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceEEeec
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYDLEL 278 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~l~~ 278 (455)
.++.++|.++..+++++.+.. ..+.++||+||||||||++|+++|... +..++.+++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 477889988887777775542 124678999999999999999999764 566777766
Q ss_pred cccCC--------hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCC
Q 012846 279 SAVHS--------NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSC 348 (455)
Q Consensus 279 ~~~~~--------~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~ 348 (455)
+.+.. +..++.++... ..++||||||||.++..+... ..+..+ .|.+..+...
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~-------------~g~~d~---~nlLkp~L~~- 313 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-------------GGQVDA---ANLIKPLLSS- 313 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC-------------CcHHHH---HHHHHHHHhC-
Confidence 55431 34566666543 367899999999998632211 011112 2222222222
Q ss_pred CCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcC
Q 012846 349 GDERIIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 349 ~~~~iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
+++.+|++||.++ ..|+||.| ||+ .|.++.|+.+++..|++.+..
T Consensus 314 -g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 314 -GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred -CCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 4688999998764 57999999 996 799999999999999996543
No 111
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.4e-12 Score=140.94 Aligned_cols=161 Identities=16% Similarity=0.307 Sum_probs=120.7
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC------------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN------------ 270 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~------------ 270 (455)
....|.+|++|+|++.+++.|...+. . ...+..||||||+|+|||++|+++|+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~----~--------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIA----T--------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 35678999999999999888877664 1 12467899999999999999999999874
Q ss_pred -------------CceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccch
Q 012846 271 -------------FDIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQ 331 (455)
Q Consensus 271 -------------~~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (455)
.+++.++..+..+-+.++.++..+. ..-|++|||+|.+..
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~--------------------- 135 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ--------------------- 135 (614)
T ss_pred cchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------------
Confidence 3555666554444567777775543 356999999997732
Q ss_pred hhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc
Q 012846 332 VTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL 403 (455)
Q Consensus 332 ~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 403 (455)
...+.||..|+.. ++..++|++|+.+..|-++|.+ |+ ..++|..++.++....++..+...+...
T Consensus 136 ~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i 200 (614)
T PRK14971 136 AAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITA 200 (614)
T ss_pred HHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2357788888764 3457778888888899999988 77 5699999999998888877665544333
No 112
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.46 E-value=2.3e-12 Score=131.45 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=108.4
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC---------CceEEeeccc
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---------FDIYDLELSA 280 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~---------~~~~~l~~~~ 280 (455)
.+.++|.++..+.|...+...+.. ..+.+++++||||||||++++++++.+. ..++.++|..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 467899999999998887655432 1245799999999999999999998763 5677788765
Q ss_pred cCChHH--------------------------HHHHH---HhcCCceEEEEeccccccccccccCCCccccccCCCccch
Q 012846 281 VHSNSE--------------------------LRRVL---LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQ 331 (455)
Q Consensus 281 ~~~~~~--------------------------L~~ll---~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (455)
..+... +..++ ....++.||+|||+|.+.. ..+
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~------------------~~~ 146 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG------------------DDD 146 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc------------------CCc
Confidence 543211 11111 1223568999999998862 111
Q ss_pred hhHhhHhhhhhccccCCCCceEEEEecCCCC---CCCccccCCCcee-eEEEeCCCCHHHHHHHHHHHcC
Q 012846 332 VTLSGLLNFLDGLWSSCGDERIIVFTTNHKD---RLDPAVLRPGRMD-VHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 332 ~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~---~LD~aLlrpgR~d-~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
..+..|+...+. ....+..+.+|+++|.++ .+++.+.+ ||. ..|+|+.++.++...+++..+.
T Consensus 147 ~~L~~l~~~~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 147 DLLYQLSRARSN-GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HHHHhHhccccc-cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 234444443211 111224588889999875 57888877 674 6799999999999999998774
No 113
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.46 E-value=1.2e-12 Score=124.96 Aligned_cols=163 Identities=15% Similarity=0.184 Sum_probs=100.8
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecc
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELS 279 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~ 279 (455)
....|.+||++++... +.+...+..+.. +....++++|+||||||||+|++++++.+ +.+++.+++.
T Consensus 10 ~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 10 GPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 4456778999773321 122233332222 22335689999999999999999999875 6678888876
Q ss_pred ccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecC
Q 012846 280 AVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTN 359 (455)
Q Consensus 280 ~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN 359 (455)
.... .+.......+|+|||+|.+.. ..+ ..|+..++..... ...++|+|++
T Consensus 80 ~~~~------~~~~~~~~~~liiDdi~~l~~------------------~~~---~~L~~~~~~~~~~--~~~~vl~~~~ 130 (227)
T PRK08903 80 SPLL------AFDFDPEAELYAVDDVERLDD------------------AQQ---IALFNLFNRVRAH--GQGALLVAGP 130 (227)
T ss_pred HhHH------HHhhcccCCEEEEeChhhcCc------------------hHH---HHHHHHHHHHHHc--CCcEEEEeCC
Confidence 6431 122334567999999997632 222 3344444443222 2344555555
Q ss_pred CCC---CCCccccCCCce--eeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHH
Q 012846 360 HKD---RLDPAVLRPGRM--DVHIYMSYCTPCGFDTLAANYLGITDHPLIYE 406 (455)
Q Consensus 360 ~~~---~LD~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~ 406 (455)
.+. .+.+.|.. |+ ...+++|.|+.++...+++.+....+..+.++
T Consensus 131 ~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~ 180 (227)
T PRK08903 131 AAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADE 180 (227)
T ss_pred CCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 432 34566766 66 57999999999888888876654444444443
No 114
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.46 E-value=2.5e-12 Score=128.49 Aligned_cols=161 Identities=15% Similarity=0.199 Sum_probs=110.3
Q ss_pred eeecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC-----CceEE
Q 012846 201 WITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN-----FDIYD 275 (455)
Q Consensus 201 ~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~-----~~~~~ 275 (455)
+++...|.+|++++|.+++++.+...+. . +. ...+|||||||||||++++++++.+. ..++.
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~----~-------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVK----E-------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHh----C-------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 3467889999999999988887776553 1 11 12589999999999999999999873 23455
Q ss_pred eeccccCChHHHHHHH----Hhc----CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC
Q 012846 276 LELSAVHSNSELRRVL----LST----GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS 347 (455)
Q Consensus 276 l~~~~~~~~~~L~~ll----~~~----~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~ 347 (455)
++.++......++..+ ... ..+.+|+|||+|.+.. . ....|+..++...
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------------~---~~~~L~~~le~~~-- 130 (319)
T PRK00440 74 LNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------------D---AQQALRRTMEMYS-- 130 (319)
T ss_pred eccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------------H---HHHHHHHHHhcCC--
Confidence 5444433222222222 111 2356999999997743 1 1245666665532
Q ss_pred CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 012846 348 CGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP 402 (455)
Q Consensus 348 ~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~ 402 (455)
....+|+++|.+..+.+++.+ |+. .++++.++.++...+++.++...+..
T Consensus 131 --~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~ 180 (319)
T PRK00440 131 --QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIE 180 (319)
T ss_pred --CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 235677788888888888887 765 58999999999998888887655443
No 115
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.46 E-value=8e-13 Score=137.02 Aligned_cols=189 Identities=16% Similarity=0.218 Sum_probs=115.6
Q ss_pred cCCCCCcccc-cccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEee
Q 012846 204 FNHPATFDTL-AMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLE 277 (455)
Q Consensus 204 ~~~~~~f~~l-~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~ 277 (455)
+++..+|++. +|.... .....+..+...+ |.. ..+++||||||||||+|++|+++++ +..++.++
T Consensus 103 l~~~~tfd~fi~g~~n~--~a~~~~~~~~~~~------~~~-~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNR--LAHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCcccccccCCcHH--HHHHHHHHHHhCc------Ccc-CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 4455689994 454332 1223333332221 222 3468999999999999999999987 56788887
Q ss_pred ccccCCh-------HHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCC
Q 012846 278 LSAVHSN-------SELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGD 350 (455)
Q Consensus 278 ~~~~~~~-------~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~ 350 (455)
+.++... ..+..+........+|+|||||.+... ..+...|+..++.+... +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~-------------------~~~~~~l~~~~n~~~~~--~ 232 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGK-------------------ERTQEEFFHTFNALHEN--G 232 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCC-------------------HHHHHHHHHHHHHHHHC--C
Confidence 7654311 111122223345679999999987531 11223455555554433 2
Q ss_pred ceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHH-HhhcCCCCHHHHHHH
Q 012846 351 ERIIVFTTNHKDR---LDPAVLRPGRMD--VHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKE-IMQNVRVTPADVGEQ 424 (455)
Q Consensus 351 ~~iiI~tTN~~~~---LD~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~-l~~~~~~tpa~i~~~ 424 (455)
..+||.++..|.. +++.+.+ ||. ..++++.|+.++|..|++..+...+..+.+++.. +++...-+..++...
T Consensus 233 ~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 233 KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 3455544445544 5678887 885 6899999999999999999887766555555444 344444455554443
No 116
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.45 E-value=5.3e-13 Score=146.20 Aligned_cols=153 Identities=19% Similarity=0.265 Sum_probs=105.1
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS 283 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~ 283 (455)
...|.+|++++|.+...... ..+...+.. + ....++||||||||||++|+++|+.++.+++.+++....
T Consensus 21 k~RP~tldd~vGQe~ii~~~-~~L~~~i~~-------~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~- 89 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEG-RLLRRAIKA-------D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG- 89 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhh-HHHHHHHhc-------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh-
Confidence 45689999999998876431 112222222 1 124789999999999999999999999999888876432
Q ss_pred hHHHHHHHHh-------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 284 NSELRRVLLS-------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 284 ~~~L~~ll~~-------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
...++..+.. ...+.||||||||.+.. . ....|+..++. ..+++|+
T Consensus 90 i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------------~---qQdaLL~~lE~------g~IiLI~ 142 (725)
T PRK13341 90 VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------------A---QQDALLPWVEN------GTITLIG 142 (725)
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------------H---HHHHHHHHhcC------ceEEEEE
Confidence 2333333322 23567999999998742 1 12445655543 2356665
Q ss_pred ec-CC-CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcC
Q 012846 357 TT-NH-KDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 357 tT-N~-~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
+| .. ...+++++++ |+ ..+.++.++.+++..+++.++.
T Consensus 143 aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 143 ATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred ecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 44 33 3578999998 65 4689999999999999998875
No 117
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.44 E-value=9e-13 Score=138.43 Aligned_cols=192 Identities=16% Similarity=0.223 Sum_probs=119.0
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEee
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLE 277 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~ 277 (455)
.+++..+|++.+..+.-+. ....+..+...+ |.. ..+++||||||||||+|++|+|+++ +..++.++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCCCcccccccCCCcHH-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3455668999553332221 222333332221 222 2569999999999999999999987 55678888
Q ss_pred ccccCCh-------HHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCC
Q 012846 278 LSAVHSN-------SELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGD 350 (455)
Q Consensus 278 ~~~~~~~-------~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~ 350 (455)
+.++... .....+........+|+|||||.+... ..+...|+..++.+... +
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~-------------------~~~~~~l~~~~n~l~~~--~ 244 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK-------------------ERTQEEFFHTFNALHEA--G 244 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC-------------------HHHHHHHHHHHHHHHHC--C
Confidence 7665321 111223333446789999999987431 11234556656555443 2
Q ss_pred ceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHH-hhcCCCCHHHHHHH
Q 012846 351 ERIIVFTTNHKDR---LDPAVLRPGRMD--VHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEI-MQNVRVTPADVGEQ 424 (455)
Q Consensus 351 ~~iiI~tTN~~~~---LD~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l-~~~~~~tpa~i~~~ 424 (455)
..+||.++..|.. +++.|.. ||. ..+++..|+.+++..+++..+...+..+.+++.++ ++...-+..++...
T Consensus 245 ~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 245 KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 2455544445544 6788887 885 68999999999999999998876555565555444 44445555555444
Q ss_pred H
Q 012846 425 L 425 (455)
Q Consensus 425 l 425 (455)
|
T Consensus 323 l 323 (450)
T PRK00149 323 L 323 (450)
T ss_pred H
Confidence 3
No 118
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.43 E-value=1.6e-12 Score=144.04 Aligned_cols=197 Identities=17% Similarity=0.251 Sum_probs=126.8
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCC---CCc-eeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChH--
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKA---WKR-GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNS-- 285 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~---~~r-giLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~-- 285 (455)
.|+|+++.++.|.+.+... +.|.. .|. .+||+||||||||++|+++|..++.+++.++++++....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 5678887777777665432 12221 133 489999999999999999999999999999988764321
Q ss_pred -----------------HHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc--c
Q 012846 286 -----------------ELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW--S 346 (455)
Q Consensus 286 -----------------~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~--~ 346 (455)
.+.+.+. ....+||+|||||.+-+ ...+.||..||.-. .
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~~---------------------~~~~~Ll~~ld~g~~~d 584 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAHP---------------------DIYNILLQVMDYATLTD 584 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcCH---------------------HHHHHHHHhhccCeeec
Confidence 2222222 23568999999997643 23566777776421 1
Q ss_pred CCC-----CceEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 347 SCG-----DERIIVFTTNHKD-------------------------RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 347 ~~~-----~~~iiI~tTN~~~-------------------------~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
..| .+.+||+|||... .+.|+|+. |||.+|.|...+.++..+|++.++
T Consensus 585 ~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 585 NNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred CCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHH
Confidence 111 3578999998631 24677776 999999999999999999999887
Q ss_pred CCCCCCcHHHHHHHhhcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 012846 397 GITDHPLIYEIKEIMQNVRVTPADVGEQLLKNEDPEIALKGLLEFLNA 444 (455)
Q Consensus 397 ~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~ 444 (455)
... ...+...--...+++.-+..++-...++....+.+..++++
T Consensus 663 ~~l----~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 663 DEL----SKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHH----HHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHH
Confidence 431 11111110013456555444444444555555555555543
No 119
>PRK08727 hypothetical protein; Validated
Probab=99.43 E-value=1.5e-12 Score=125.06 Aligned_cols=157 Identities=18% Similarity=0.269 Sum_probs=100.6
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecc
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELS 279 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~ 279 (455)
......+|++.++.+.- ....+..... |. +...++|+||+|||||+|++|+++.+ +..+..++..
T Consensus 11 ~~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~~-~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 11 RYPSDQRFDSYIAAPDG---LLAQLQALAA--------GQ-SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CCCCcCChhhccCCcHH---HHHHHHHHHh--------cc-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 34555689998766542 1122211111 11 23459999999999999999998765 5566666655
Q ss_pred ccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecC
Q 012846 280 AVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTN 359 (455)
Q Consensus 280 ~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN 359 (455)
+.. ..+.+.+....+..+|+|||+|.+.... ... ..+++.++..... +.-+|+|+|
T Consensus 79 ~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~~~----------------~~~---~~lf~l~n~~~~~---~~~vI~ts~ 134 (233)
T PRK08727 79 AAA--GRLRDALEALEGRSLVALDGLESIAGQR----------------EDE---VALFDFHNRARAA---GITLLYTAR 134 (233)
T ss_pred Hhh--hhHHHHHHHHhcCCEEEEeCcccccCCh----------------HHH---HHHHHHHHHHHHc---CCeEEEECC
Confidence 433 3455666666777899999999775311 112 2333444433222 133455554
Q ss_pred -CCCCC---CccccCCCce--eeEEEeCCCCHHHHHHHHHHHcC
Q 012846 360 -HKDRL---DPAVLRPGRM--DVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 360 -~~~~L---D~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
.|..+ +|+|.+ |+ ..++.++.|+.+++..+++....
T Consensus 135 ~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 135 QMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred CChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 66655 789988 86 67899999999999999997543
No 120
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.42 E-value=1e-12 Score=147.61 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=112.1
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceEE
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYD 275 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~ 275 (455)
.+..++.++|.+...+++++.+. ...+.+++|+||||||||++++++|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 45678999999887776666542 1235678999999999999999999876 678888
Q ss_pred eeccccCC--------hHHHHHHHHhc---CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc
Q 012846 276 LELSAVHS--------NSELRRVLLST---GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL 344 (455)
Q Consensus 276 l~~~~~~~--------~~~L~~ll~~~---~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~ 344 (455)
++++.+.. +..++++|... ..++||||||||.+....... ......+-|...+
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-------------~~~d~~~~Lk~~l--- 298 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-------------GAMDAGNMLKPAL--- 298 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-------------chhHHHHHhchhh---
Confidence 88776531 23677777654 358999999999987522111 0011112222222
Q ss_pred ccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 345 WSSCGDERIIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 345 ~~~~~~~~iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
. .+.+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+...
T Consensus 299 -~--~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 299 -A--RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred -h--cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHH
Confidence 1 24588888888663 47999999 996 5899999999999999876443
No 121
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.40 E-value=3.6e-12 Score=142.91 Aligned_cols=152 Identities=18% Similarity=0.291 Sum_probs=110.1
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceEEee
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYDLE 277 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~l~ 277 (455)
..++.++|.++..+++++.+.. ..+.+++|+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3578899999888888776532 235689999999999999999999876 47899999
Q ss_pred ccccCC--------hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHh-hhhhcccc
Q 012846 278 LSAVHS--------NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLL-NFLDGLWS 346 (455)
Q Consensus 278 ~~~~~~--------~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL-~~lDg~~~ 346 (455)
.+.+.. +..++.++.... .++||||||||.+.......+ ....+.+| ..+.
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g--------------~~~~a~lLkp~l~---- 304 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG--------------AIDAANILKPALA---- 304 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC--------------cccHHHHhHHHHh----
Confidence 876531 357788886653 579999999999975322111 01122333 2322
Q ss_pred CCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012846 347 SCGDERIIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANY 395 (455)
Q Consensus 347 ~~~~~~iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 395 (455)
.+++.+|++|+..+ ..||+|.+ ||. .|.++.|+.++...|++..
T Consensus 305 --rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 305 --RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred --CCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 24577888887653 57999999 996 5799999999988887753
No 122
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.40 E-value=4.4e-12 Score=121.89 Aligned_cols=158 Identities=14% Similarity=0.165 Sum_probs=95.2
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC---CceEEeeccc
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDIYDLELSA 280 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~---~~~~~l~~~~ 280 (455)
+....+||+.+-.. - +.....+...... +..+.++||||||||||+|++++|+++. ..+..++...
T Consensus 15 ~~~~~~fd~f~~~~-n-~~a~~~l~~~~~~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 15 LPDDETFASFYPGD-N-DSLLAALQNALRQ---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCcCCccccccCc-c-HHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 44556899887321 1 1233444333221 1235799999999999999999998764 3455555543
Q ss_pred cCChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCC
Q 012846 281 VHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNH 360 (455)
Q Consensus 281 ~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~ 360 (455)
... ...+++....+-.+|+||||+.+.. ...+-..|.+.++..... +...+|+.+++.
T Consensus 84 ~~~--~~~~~~~~~~~~dlliiDdi~~~~~-------------------~~~~~~~lf~l~n~~~e~-g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--FVPEVLEGMEQLSLVCIDNIECIAG-------------------DELWEMAIFDLYNRILES-GRTRLLITGDRP 141 (235)
T ss_pred Hhh--hhHHHHHHhhhCCEEEEeChhhhcC-------------------CHHHHHHHHHHHHHHHHc-CCCeEEEeCCCC
Confidence 221 1122233333346899999997742 111122333444433322 222455555556
Q ss_pred CCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHc
Q 012846 361 KDR---LDPAVLRPGRMD--VHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 361 ~~~---LD~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l 396 (455)
|.. +.|.|.+ |+. .++.+..|+.+++.++++...
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHH
Confidence 655 5789988 885 899999999999999988644
No 123
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=3.6e-11 Score=122.54 Aligned_cols=152 Identities=20% Similarity=0.275 Sum_probs=111.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-------------
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF------------- 271 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~------------- 271 (455)
.+|++|++|+|.+..++.+.+.+.. ...+.++||+||+|+||+++|.++|+.+-.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 6899999999999999888765531 134668999999999999999999987721
Q ss_pred ---------------------ceEEeecc--cc-------CChHHHHHHHHhcC------CceEEEEecccccccccccc
Q 012846 272 ---------------------DIYDLELS--AV-------HSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQ 315 (455)
Q Consensus 272 ---------------------~~~~l~~~--~~-------~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~ 315 (455)
+++.+... +- ..-++++++..... .+-|++|||+|.+-.
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~----- 155 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA----- 155 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-----
Confidence 12233221 10 12245666654432 567999999997632
Q ss_pred CCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012846 316 AQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANY 395 (455)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 395 (455)
...+.||..++.. ....++|++|++++.+.|.+.+ |+ ..|.|+.++.++...++...
T Consensus 156 ----------------~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 156 ----------------NAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred ----------------HHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHh
Confidence 3457788888754 3457888899999999999887 77 68999999999998888875
Q ss_pred c
Q 012846 396 L 396 (455)
Q Consensus 396 l 396 (455)
.
T Consensus 213 ~ 213 (365)
T PRK07471 213 G 213 (365)
T ss_pred c
Confidence 4
No 124
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.38 E-value=3.5e-12 Score=133.36 Aligned_cols=160 Identities=16% Similarity=0.280 Sum_probs=122.3
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCce-----------
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDI----------- 273 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~----------- 273 (455)
.+|.+|++++|.+.+.+.|.+.+..- ....+|||.||.|||||++|+.+|+.+++.-
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 45889999999999999888876421 2246899999999999999999999886541
Q ss_pred -------------EEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhH
Q 012846 274 -------------YDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTL 334 (455)
Q Consensus 274 -------------~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~l 334 (455)
+.+|..+-..-+++|++..... +.-|.+|||++.+. +..+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------------~~af 136 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------------KQAF 136 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------------HHHH
Confidence 1111111123367788877653 45699999999763 3457
Q ss_pred hhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH
Q 012846 335 SGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI 404 (455)
Q Consensus 335 s~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~ 404 (455)
+.||..++. ++..+++|++|..++++++.+++ |+ .+..|...+.++....+...+..++....
T Consensus 137 NALLKTLEE----PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e 199 (515)
T COG2812 137 NALLKTLEE----PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIE 199 (515)
T ss_pred HHHhccccc----CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccC
Confidence 888888765 35679999999999999999998 77 57789999999999999988887755443
No 125
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=2.1e-12 Score=128.13 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=91.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHH------------------HH-HhcCCceEEEEecc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRR------------------VL-LSTGNRSILVVEDI 305 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~------------------ll-~~~~~~sIlliDei 305 (455)
++.+||.||||||||++++++|..++.+++.+++....+..++.. .| .....+++|++||+
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 568999999999999999999999999999998776543221110 01 11246789999999
Q ss_pred ccccccccccCCCccccccCCCccchhhHhhHhhh-----hhcc--ccCCCCceEEEEecCCCC------------CCCc
Q 012846 306 DCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNF-----LDGL--WSSCGDERIIVFTTNHKD------------RLDP 366 (455)
Q Consensus 306 D~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~-----lDg~--~~~~~~~~iiI~tTN~~~------------~LD~ 366 (455)
|..-+ .....++.+|.. +++. .-.+.....+|+|+|..+ .+++
T Consensus 144 n~a~p------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 144 DAGRP------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred hccCH------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 97643 222223333331 1110 001223577899999755 4689
Q ss_pred cccCCCceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 367 AVLRPGRMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 367 aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
|++. ||-+.+.++||+.+.-.+|+....
T Consensus 206 A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 206 AQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 9999 999899999999999999887654
No 126
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.38 E-value=2.6e-11 Score=125.09 Aligned_cols=158 Identities=20% Similarity=0.207 Sum_probs=107.6
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEeeccccCC
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLELSAVHS 283 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~~~~~~~ 283 (455)
..+.+++.++..++|...+...+.. ..+..+++|||||||||++++.+++.+ +..++.++|....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3467888888888887777654432 124578999999999999999999877 56788888765432
Q ss_pred h-----------------------HHHHH----HHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhh
Q 012846 284 N-----------------------SELRR----VLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSG 336 (455)
Q Consensus 284 ~-----------------------~~L~~----ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 336 (455)
. .++.. .+.....+.||+|||+|.+.. + .....+..
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~---~--------------~~~~~l~~ 161 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE---K--------------EGNDVLYS 161 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc---c--------------CCchHHHH
Confidence 1 11111 112223568999999998862 0 11234566
Q ss_pred HhhhhhccccCCCCceEEEEecCCC---CCCCccccCCCce-eeEEEeCCCCHHHHHHHHHHHcC
Q 012846 337 LLNFLDGLWSSCGDERIIVFTTNHK---DRLDPAVLRPGRM-DVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 337 LL~~lDg~~~~~~~~~iiI~tTN~~---~~LD~aLlrpgR~-d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
|+..++... +.++.+|+++|.+ +.+++.+.+ |+ ...|+|+.++.++...+++..+.
T Consensus 162 l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 162 LLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred HHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 666555432 2357788888866 356777665 55 36789999999999999988764
No 127
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=5.9e-11 Score=120.35 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=120.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc------------
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD------------ 272 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~------------ 272 (455)
.||..|+.|+|.++.++.+...+. . | ..+..+||+||+|+|||++|..+|+.+...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~----~-------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR----E-------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH----c-------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 689999999999999888876543 1 1 235689999999999999999999987441
Q ss_pred ------------------eEEeecc---------ccCChHHHHHHHHh---cC---CceEEEEeccccccccccccCCCc
Q 012846 273 ------------------IYDLELS---------AVHSNSELRRVLLS---TG---NRSILVVEDIDCSLELEDRQAQPT 319 (455)
Q Consensus 273 ------------------~~~l~~~---------~~~~~~~L~~ll~~---~~---~~sIlliDeiD~l~~~~~~~~~~~ 319 (455)
++.+... ...+-++++++... .+ ..-|++|||+|.+-.
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------- 155 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------- 155 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---------
Confidence 1112100 00112444444322 21 456999999998732
Q ss_pred cccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 320 TVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 320 ~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
...+.||..|+.. ....++|+.|+.++.+.|.+.. |+ .++.++.++.++...+++......
T Consensus 156 ------------~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~ 216 (351)
T PRK09112 156 ------------NAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ 216 (351)
T ss_pred ------------HHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc
Confidence 2346788888764 2346777778889999999987 88 699999999999999888742221
Q ss_pred CCCcHHHHHHHhhcCCCCHHHHHHHH
Q 012846 400 DHPLIYEIKEIMQNVRVTPADVGEQL 425 (455)
Q Consensus 400 ~~~l~~~i~~l~~~~~~tpa~i~~~l 425 (455)
+ -..+.+..++...+.+|....+++
T Consensus 217 ~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 217 G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 112334455555556666555443
No 128
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.37 E-value=1.4e-11 Score=133.67 Aligned_cols=172 Identities=18% Similarity=0.343 Sum_probs=111.3
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceE
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIY 274 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~ 274 (455)
..|.+|++++|.+...+.+...+. .+.+..++|+||||||||++|+++++.. +.+++
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 458899999999888887765442 1234579999999999999999998765 35688
Q ss_pred EeeccccCCh-HHH----------------HHHHHh------------cCCceEEEEeccccccccccccCCCccccccC
Q 012846 275 DLELSAVHSN-SEL----------------RRVLLS------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLK 325 (455)
Q Consensus 275 ~l~~~~~~~~-~~L----------------~~ll~~------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~ 325 (455)
.+++..+..+ ..+ ++.+.. ...+++|||||++.+-.
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------- 279 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------- 279 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH---------------
Confidence 8888765311 111 011111 12467999999997743
Q ss_pred CCccchhhHhhHhhhhhc--------cc----------------cCCCCceEEEE-ecCCCCCCCccccCCCceeeEEEe
Q 012846 326 PLRPMQVTLSGLLNFLDG--------LW----------------SSCGDERIIVF-TTNHKDRLDPAVLRPGRMDVHIYM 380 (455)
Q Consensus 326 ~~~~~~~~ls~LL~~lDg--------~~----------------~~~~~~~iiI~-tTN~~~~LD~aLlrpgR~d~~I~~ 380 (455)
..+ ..|+..|+. .+ ......+++|+ ||+.++.++++|.+ ||. .+.+
T Consensus 280 ---~~Q---~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~ 350 (615)
T TIGR02903 280 ---LLQ---NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFF 350 (615)
T ss_pred ---HHH---HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEe
Confidence 111 223333321 00 00112344444 67778899999988 986 5789
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhc
Q 012846 381 SYCTPCGFDTLAANYLGITDHPLIYEIKEIMQN 413 (455)
Q Consensus 381 ~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~ 413 (455)
+.++.++...|++.++...+..+.+++..++.+
T Consensus 351 ~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ 383 (615)
T TIGR02903 351 EPLTPEDIALIVLNAAEKINVHLAAGVEELIAR 383 (615)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999998765443444444444444
No 129
>PRK05642 DNA replication initiation factor; Validated
Probab=99.37 E-value=1.4e-11 Score=118.39 Aligned_cols=160 Identities=17% Similarity=0.201 Sum_probs=100.0
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCC-CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAW-KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~-~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
...+..+||+.+... .....+.+..+.... + .| .+.++||||+|||||+|++|+|+++ +..++.++.
T Consensus 11 ~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~------~-~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 11 RLRDDATFANYYPGA--NAAALGYVERLCEAD------A-GWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CCCCcccccccCcCC--hHHHHHHHHHHhhcc------c-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH
Confidence 345556899887332 133444444332211 1 12 3678999999999999999999865 567777777
Q ss_pred cccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec
Q 012846 279 SAVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358 (455)
Q Consensus 279 ~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT 358 (455)
.++... ...++....+-.+|+|||++.+... ..+...|++.++.+... +..+||.++
T Consensus 82 ~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~~-------------------~~~~~~Lf~l~n~~~~~--g~~ilits~ 138 (234)
T PRK05642 82 AELLDR--GPELLDNLEQYELVCLDDLDVIAGK-------------------ADWEEALFHLFNRLRDS--GRRLLLAAS 138 (234)
T ss_pred HHHHhh--hHHHHHhhhhCCEEEEechhhhcCC-------------------hHHHHHHHHHHHHHHhc--CCEEEEeCC
Confidence 665422 1233333334468999999976431 11123455555554332 235555555
Q ss_pred CCCCCC---CccccCCCce--eeEEEeCCCCHHHHHHHHHHHc
Q 012846 359 NHKDRL---DPAVLRPGRM--DVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 359 N~~~~L---D~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l 396 (455)
..|..+ .|.|.+ |+ ...+.+..|+.+++..+++...
T Consensus 139 ~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 139 KSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred CCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 555433 688888 87 5788899999999999998543
No 130
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=5.6e-11 Score=119.09 Aligned_cols=171 Identities=12% Similarity=0.172 Sum_probs=118.0
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC--------ceEEeecc-
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF--------DIYDLELS- 279 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~--------~~~~l~~~- 279 (455)
+|++|+|++.+++.+...+. ....+..||||||+|+|||++|.++|+.+.. +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 58999999999888877652 1234678999999999999999999997622 34444331
Q ss_pred -ccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCce
Q 012846 280 -AVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDER 352 (455)
Q Consensus 280 -~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ 352 (455)
....-++++.+..... ..-|++|||+|.+.. ...+.||..|+.. ++..
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~---------------------~a~naLLK~LEep----p~~t 124 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE---------------------QAQNAFLKTIEEP----PKGV 124 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH---------------------HHHHHHHHHhcCC----CCCe
Confidence 1123456777765432 456999999987632 2347788888753 3557
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcCCCCHHHHH
Q 012846 353 IIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNVRVTPADVG 422 (455)
Q Consensus 353 iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~ 422 (455)
++|++|++++.|.|++.. |+ .+++|+.|+.++....+...+... ..+++..++.-.+-+|..+.
T Consensus 125 ~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 125 FIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred EEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHHHHH
Confidence 788888889999999998 77 589999999998877776544211 12334444444344454443
No 131
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.37 E-value=1.6e-11 Score=133.00 Aligned_cols=193 Identities=18% Similarity=0.218 Sum_probs=121.5
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceEEeeccc
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYDLELSA 280 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~l~~~~ 280 (455)
+.|.+.++..++|...+...+.. ......++++||||||||++++.+.+.+ .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 67888888888888887766543 1222345799999999999999998766 25678899866
Q ss_pred cCCh-----------------------HHHHHHHHhcC----CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 281 VHSN-----------------------SELRRVLLSTG----NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 281 ~~~~-----------------------~~L~~ll~~~~----~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+.+. ..+..+|.... ...||+|||||.+.. ..+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k------------------K~QDV 888 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT------------------KTQKV 888 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc------------------cHHHH
Confidence 4322 12333333321 246999999999864 11223
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCC---CCCCCccccCCCceee-EEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHH
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNH---KDRLDPAVLRPGRMDV-HIYMSYCTPCGFDTLAANYLGITDHPLIYEIKE 409 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~---~~~LD~aLlrpgR~d~-~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~ 409 (455)
|-.|++. ... .+..++||+++|. ++.|+|.+.. |+.. .|.|++++.+++..|++.-+......+.+++-+
T Consensus 889 LYnLFR~---~~~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIE 962 (1164)
T PTZ00112 889 LFTLFDW---PTK-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQ 962 (1164)
T ss_pred HHHHHHH---hhc-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 3333333 221 2346888888885 5677888877 6643 488899999999999998775432222333333
Q ss_pred HhhcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 012846 410 IMQNVRVTPADVGEQLLKNEDPEIALKGLLEFLNA 444 (455)
Q Consensus 410 l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~ 444 (455)
++.+ -.....+|+..||+-|..+.+.
T Consensus 963 LIAr---------kVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 963 LCAR---------KVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred HHHH---------hhhhcCCHHHHHHHHHHHHHhh
Confidence 3221 0001246666666666666543
No 132
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=4.4e-12 Score=132.52 Aligned_cols=190 Identities=15% Similarity=0.246 Sum_probs=114.0
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEeec
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLEL 278 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~~ 278 (455)
+++..+||+.+..+.-.. ....+..+...+ | +..+++||||||+|||+|++|+|+++ +..++.+++
T Consensus 98 l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSF-AYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchHH-HHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 455668999773333222 222233332221 2 23469999999999999999999986 456777776
Q ss_pred cccCCh-------HHHHHHHHhc-CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCC
Q 012846 279 SAVHSN-------SELRRVLLST-GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGD 350 (455)
Q Consensus 279 ~~~~~~-------~~L~~ll~~~-~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~ 350 (455)
.++... ..+..+.... .++.+|+|||++.+.+. ..+...|+..++.+... +
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~-------------------~~~q~elf~~~n~l~~~--~ 227 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK-------------------TGVQTELFHTFNELHDS--G 227 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc-------------------HHHHHHHHHHHHHHHHc--C
Confidence 654311 1112222222 25789999999987531 11123444555554433 2
Q ss_pred ceEEEEecCCCCC---CCccccCCCce--eeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHh-hcCCCCHHHHHHH
Q 012846 351 ERIIVFTTNHKDR---LDPAVLRPGRM--DVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIM-QNVRVTPADVGEQ 424 (455)
Q Consensus 351 ~~iiI~tTN~~~~---LD~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~-~~~~~tpa~i~~~ 424 (455)
..+||.+.+.|.. +++.+.+ || ...+.+..|+.+.|..|++..+...+..+.+++...+ +...-+..++...
T Consensus 228 k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 228 KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHH
Confidence 2444444455654 4567777 66 5788999999999999999988766566666555544 3333444444443
Q ss_pred H
Q 012846 425 L 425 (455)
Q Consensus 425 l 425 (455)
+
T Consensus 306 l 306 (440)
T PRK14088 306 I 306 (440)
T ss_pred H
Confidence 3
No 133
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.36 E-value=1.2e-11 Score=124.33 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=101.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC-------CceE--Ee
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN-------FDIY--DL 276 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~-------~~~~--~l 276 (455)
.|.+|++|+|.++.++.+.-.+.. +...++||+||||||||++++++|+.+. .++- .+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 466799999999998877543211 1124799999999999999999999883 2111 00
Q ss_pred e----cc-----c-------------------cCChHHHHHHHH-----------hcCCceEEEEeccccccccccccCC
Q 012846 277 E----LS-----A-------------------VHSNSELRRVLL-----------STGNRSILVVEDIDCSLELEDRQAQ 317 (455)
Q Consensus 277 ~----~~-----~-------------------~~~~~~L~~ll~-----------~~~~~sIlliDeiD~l~~~~~~~~~ 317 (455)
. +. . +...-.+...+. ....+++|++|||+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------- 142 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------- 142 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------
Confidence 0 00 0 000111122211 112457999999997643
Q ss_pred CccccccCCCccchhhHhhHhhhhhc---------cccCCCCceEEEEecCCCC-CCCccccCCCceeeEEEeCCCCH-H
Q 012846 318 PTTVNVLKPLRPMQVTLSGLLNFLDG---------LWSSCGDERIIVFTTNHKD-RLDPAVLRPGRMDVHIYMSYCTP-C 386 (455)
Q Consensus 318 ~~~~~~~~~~~~~~~~ls~LL~~lDg---------~~~~~~~~~iiI~tTN~~~-~LD~aLlrpgR~d~~I~~~~p~~-~ 386 (455)
.+++.|++.|+. .....+..+++|+|+|..+ .++++|+. ||.++|.+++|.. +
T Consensus 143 --------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~ 206 (334)
T PRK13407 143 --------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVE 206 (334)
T ss_pred --------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHH
Confidence 345666776642 1111223467778888644 58999999 9999999999988 8
Q ss_pred HHHHHHHHHcC
Q 012846 387 GFDTLAANYLG 397 (455)
Q Consensus 387 ~r~~l~~~~l~ 397 (455)
++.++++....
T Consensus 207 e~~~il~~~~~ 217 (334)
T PRK13407 207 TRVEVIRRRDA 217 (334)
T ss_pred HHHHHHHHhhc
Confidence 88999987543
No 134
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.35 E-value=1.4e-11 Score=106.97 Aligned_cols=115 Identities=28% Similarity=0.411 Sum_probs=80.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHHHHH-----------HHHhcCCceEEEEeccccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSELRR-----------VLLSTGNRSILVVEDIDCSLE 310 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~L~~-----------ll~~~~~~sIlliDeiD~l~~ 310 (455)
.+.++++||||||||++++.+++.+ +.+++.+++........... .......+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4689999999999999999999998 89999999887654332221 112234689999999997622
Q ss_pred cccccCCCccccccCCCccchhhHhhHhhhhhccccC--CCCceEEEEecCCCC--CCCccccCCCceeeEEEeCC
Q 012846 311 LEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS--CGDERIIVFTTNHKD--RLDPAVLRPGRMDVHIYMSY 382 (455)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~--~~~~~iiI~tTN~~~--~LD~aLlrpgR~d~~I~~~~ 382 (455)
. ....++..+...... ...+..+|++||... .+++.+.. |++.+|.+++
T Consensus 99 ------------------~---~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 99 ------------------G---AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred ------------------H---HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 1 123444444443221 123577888888776 67888877 9998888763
No 135
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=1e-11 Score=129.66 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=93.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCCh-------HHHHHHHHhcCCceEEEEecccccccccccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSN-------SELRRVLLSTGNRSILVVEDIDCSLELEDRQ 315 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~-------~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~ 315 (455)
.+++||||||+|||+|++|+|+++ +..++.++...+... ..+..+-.......+|+||||+.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k---- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGK---- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCC----
Confidence 579999999999999999999976 577777776544211 111111122346789999999976431
Q ss_pred CCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCC-CC---CCCccccCCCcee--eEEEeCCCCHHHHH
Q 012846 316 AQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNH-KD---RLDPAVLRPGRMD--VHIYMSYCTPCGFD 389 (455)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~-~~---~LD~aLlrpgR~d--~~I~~~~p~~~~r~ 389 (455)
..+...|+..++.+... + ..+|+|+|. |. .+++.|.+ ||. ..+.++.|+.+++.
T Consensus 218 ---------------~~~qeelf~l~N~l~~~-~--k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~ 277 (445)
T PRK12422 218 ---------------GATQEEFFHTFNSLHTE-G--KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLR 277 (445)
T ss_pred ---------------hhhHHHHHHHHHHHHHC-C--CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHH
Confidence 11223344444433322 1 345555554 43 46788988 884 89999999999999
Q ss_pred HHHHHHcCCCCCCcHHHHHH
Q 012846 390 TLAANYLGITDHPLIYEIKE 409 (455)
Q Consensus 390 ~l~~~~l~~~~~~l~~~i~~ 409 (455)
.+++......+..+.+++..
T Consensus 278 ~iL~~k~~~~~~~l~~evl~ 297 (445)
T PRK12422 278 SFLERKAEALSIRIEETALD 297 (445)
T ss_pred HHHHHHHHHcCCCCCHHHHH
Confidence 99998887665556555555
No 136
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.34 E-value=2e-11 Score=129.04 Aligned_cols=174 Identities=17% Similarity=0.263 Sum_probs=119.5
Q ss_pred eeecCCCCCcccccccHHHHHHHHHHHHHHHh---c--------------hhHHh----hhCCCCCceeEEeCCCCCChH
Q 012846 201 WITFNHPATFDTLAMEAELKKMIIEDLERFVK---R--------------KDYYR----RVGKAWKRGYLLYGPPGTGKS 259 (455)
Q Consensus 201 ~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~---~--------------~~~y~----~~g~~~~rgiLL~GppGTGKT 259 (455)
++....|..|.+|.+++.+-+.++.+++.+-. + ++.+. ..+.|.++-+||+||||-|||
T Consensus 261 WVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKT 340 (877)
T KOG1969|consen 261 WVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKT 340 (877)
T ss_pred eecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChh
Confidence 35677899999999999999999998876521 1 01111 125677788999999999999
Q ss_pred HHHHHHHHHcCCceEEeeccccCChHHHHHHHHhc----------CCceEEEEeccccccccccccCCCccccccCCCcc
Q 012846 260 SLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLST----------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRP 329 (455)
Q Consensus 260 ~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~----------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~ 329 (455)
+||+.+|++.||.++.++.++-.+...++..+..+ .+|.+|+|||||-...
T Consensus 341 TLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~------------------- 401 (877)
T KOG1969|consen 341 TLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR------------------- 401 (877)
T ss_pred HHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH-------------------
Confidence 99999999999999999999998877776665443 3799999999995431
Q ss_pred chhhHhhHhhhhh--cc---ccCCC------------CceEEEEecCCCCCCCcccc--CCCceeeEEEeCCCCHHHHHH
Q 012846 330 MQVTLSGLLNFLD--GL---WSSCG------------DERIIVFTTNHKDRLDPAVL--RPGRMDVHIYMSYCTPCGFDT 390 (455)
Q Consensus 330 ~~~~ls~LL~~lD--g~---~~~~~------------~~~iiI~tTN~~~~LD~aLl--rpgR~d~~I~~~~p~~~~r~~ 390 (455)
..+..+|..+. +. ....+ =.+-||+.+|. ..-|||. | -+-..|+|..|......+
T Consensus 402 --~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr--~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 402 --AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLR--PFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred --HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcc--cceEEEEecCCChhHHHH
Confidence 11111111111 00 00000 02568898994 4557874 5 577899999998876655
Q ss_pred HHHHHcCCC
Q 012846 391 LAANYLGIT 399 (455)
Q Consensus 391 l~~~~l~~~ 399 (455)
=++..+..+
T Consensus 476 RL~~IC~rE 484 (877)
T KOG1969|consen 476 RLNEICHRE 484 (877)
T ss_pred HHHHHHhhh
Confidence 444444444
No 137
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.34 E-value=1.3e-11 Score=117.26 Aligned_cols=142 Identities=19% Similarity=0.247 Sum_probs=91.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc-----CCceEEeeccccCC-------hHHHHHHHHhcCCceEEEEecccccccccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLELSAVHS-------NSELRRVLLSTGNRSILVVEDIDCSLELED 313 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~~~~~~~-------~~~L~~ll~~~~~~sIlliDeiD~l~~~~~ 313 (455)
..++||||+|+|||+|.+|+++++ +..++.++..++.. ...+.++......-.+|+|||++.+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~--- 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG--- 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT---
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC---
Confidence 358999999999999999999875 56677887666531 123344445566788999999998753
Q ss_pred ccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCC---CccccCCCce--eeEEEeCCCCHHHH
Q 012846 314 RQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRL---DPAVLRPGRM--DVHIYMSYCTPCGF 388 (455)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~L---D~aLlrpgR~--d~~I~~~~p~~~~r 388 (455)
...+...|++.++.+... ++.+||.+...|..+ ++.|.. |+ ...+.+..|+.+.|
T Consensus 112 ----------------~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 112 ----------------KQRTQEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHH
T ss_pred ----------------chHHHHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHH
Confidence 223345566666665544 335655555666654 567777 77 56899999999999
Q ss_pred HHHHHHHcCCCCCCcHHHHHHH
Q 012846 389 DTLAANYLGITDHPLIYEIKEI 410 (455)
Q Consensus 389 ~~l~~~~l~~~~~~l~~~i~~l 410 (455)
..+++......+..+.+++...
T Consensus 172 ~~il~~~a~~~~~~l~~~v~~~ 193 (219)
T PF00308_consen 172 RRILQKKAKERGIELPEEVIEY 193 (219)
T ss_dssp HHHHHHHHHHTT--S-HHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHH
Confidence 9999988766555554444443
No 138
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=1.1e-11 Score=131.96 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=118.2
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEee
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLE 277 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~ 277 (455)
.++...+|++++..+.-.. ....+...... .+. +...++|||++|+|||+|++|||+++ +..++.++
T Consensus 280 ~L~~~~TFDnFvvG~sN~~-A~aaa~avae~------~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNRF-AHAAAVAVAEA------PAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCCCHhhhcCCCccHH-HHHHHHHHHhC------ccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3455668999874433221 11122222211 122 22459999999999999999999986 46778888
Q ss_pred ccccCCh-------HHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCC
Q 012846 278 LSAVHSN-------SELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGD 350 (455)
Q Consensus 278 ~~~~~~~-------~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~ 350 (455)
+.++..+ ..+..+.....+..+|+||||+.+... ..+...|++.++.+... +
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk-------------------e~tqeeLF~l~N~l~e~-g- 410 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK-------------------ESTQEEFFHTFNTLHNA-N- 410 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC-------------------HHHHHHHHHHHHHHHhc-C-
Confidence 7665311 111222223346789999999987531 11224455555555443 1
Q ss_pred ceEEEEecCCC----CCCCccccCCCce--eeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHh-hcCCCCHHHHHH
Q 012846 351 ERIIVFTTNHK----DRLDPAVLRPGRM--DVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIM-QNVRVTPADVGE 423 (455)
Q Consensus 351 ~~iiI~tTN~~----~~LD~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~-~~~~~tpa~i~~ 423 (455)
.. ||+|+|.+ ..+++.|.+ || ...+.+..|+.+.|..|++.........+.+++.+++ ....-+..++..
T Consensus 411 k~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 411 KQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred CC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHH
Confidence 23 44566654 356788988 77 7788999999999999999988777666666655554 333344455444
Q ss_pred HH
Q 012846 424 QL 425 (455)
Q Consensus 424 ~l 425 (455)
.|
T Consensus 488 aL 489 (617)
T PRK14086 488 AL 489 (617)
T ss_pred HH
Confidence 43
No 139
>PHA02244 ATPase-like protein
Probab=99.33 E-value=1.2e-11 Score=124.23 Aligned_cols=121 Identities=17% Similarity=0.332 Sum_probs=81.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccc----c----CChHHHH--HHHHhcCCceEEEEeccccccccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA----V----HSNSELR--RVLLSTGNRSILVVEDIDCSLELEDR 314 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~----~----~~~~~L~--~ll~~~~~~sIlliDeiD~l~~~~~~ 314 (455)
+..+||+||||||||++|++||..++.+++.++... + .....+. .++....++++|+|||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p---- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP---- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH----
Confidence 457999999999999999999999999999887321 0 0011111 2334456789999999997643
Q ss_pred cCCCccccccCCCccchhhHhhHhh-----hhhccccCCCCceEEEEecCCC-----------CCCCccccCCCceeeEE
Q 012846 315 QAQPTTVNVLKPLRPMQVTLSGLLN-----FLDGLWSSCGDERIIVFTTNHK-----------DRLDPAVLRPGRMDVHI 378 (455)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~ls~LL~-----~lDg~~~~~~~~~iiI~tTN~~-----------~~LD~aLlrpgR~d~~I 378 (455)
.....|+.++. .+++... ...+..+|+|+|.+ ..|++|++. || .+|
T Consensus 195 --------------~vq~~L~~lLd~r~l~l~g~~i~-~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I 256 (383)
T PHA02244 195 --------------EALIIINSAIANKFFDFADERVT-AHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-API 256 (383)
T ss_pred --------------HHHHHHHHHhccCeEEecCcEEe-cCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEe
Confidence 12222233321 1222211 12457889999973 578999999 99 689
Q ss_pred EeCCCCHHH
Q 012846 379 YMSYCTPCG 387 (455)
Q Consensus 379 ~~~~p~~~~ 387 (455)
+++||+..+
T Consensus 257 ~~dyp~~~E 265 (383)
T PHA02244 257 EFDYDEKIE 265 (383)
T ss_pred eCCCCcHHH
Confidence 999998533
No 140
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.2e-11 Score=134.09 Aligned_cols=200 Identities=18% Similarity=0.263 Sum_probs=140.0
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC---CceEEeeccccCChHHH
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDIYDLELSAVHSNSEL 287 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~---~~~~~l~~~~~~~~~~L 287 (455)
..|+|+++..+.|.+.+..-... ...-.+|. ..+||.||+|+|||.||+++|..+. -.++.+|+|+++....+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaG---L~dp~rPi-gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAG---LGDPNRPI-GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcC---CCCCCCCc-eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 36788888888887777543221 01111111 2578999999999999999999997 88999999999876666
Q ss_pred HHHHHhc------------------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc--ccC
Q 012846 288 RRVLLST------------------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL--WSS 347 (455)
Q Consensus 288 ~~ll~~~------------------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~--~~~ 347 (455)
.+++-.. ...|||+||||+..- ...++-||..||.= .+.
T Consensus 567 SrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH---------------------pdV~nilLQVlDdGrLTD~ 625 (786)
T COG0542 567 SRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH---------------------PDVFNLLLQVLDDGRLTDG 625 (786)
T ss_pred HHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC---------------------HHHHHHHHHHhcCCeeecC
Confidence 6665322 124899999999643 35678889988732 222
Q ss_pred CC-----CceEEEEecCCC----------------------------CCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 012846 348 CG-----DERIIVFTTNHK----------------------------DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAAN 394 (455)
Q Consensus 348 ~~-----~~~iiI~tTN~~----------------------------~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~ 394 (455)
.| .+.|||||||-= ..+.|+|+. |+|..|.|...+.+...+|+..
T Consensus 626 ~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~ 703 (786)
T COG0542 626 QGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDL 703 (786)
T ss_pred CCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHH
Confidence 22 357999999931 013577777 9999999999999999999998
Q ss_pred HcCCCCCCcHHHHHHHhhc----CCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 012846 395 YLGITDHPLIYEIKEIMQN----VRVTPADVGEQLLKNEDPEIALKGLLEFLNAK 445 (455)
Q Consensus 395 ~l~~~~~~l~~~i~~l~~~----~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~ 445 (455)
++.. +...+.+ ..+|++-...+.-+..|+....+.+..++++.
T Consensus 704 ~L~~--------l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~ 750 (786)
T COG0542 704 QLNR--------LAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQE 750 (786)
T ss_pred HHHH--------HHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHH
Confidence 8743 3333322 24676666666556667777777777776654
No 141
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.33 E-value=2e-11 Score=124.40 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=50.9
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCC-CCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~-~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
.|+|.++.|+.+...+....+....-..... ..+.++||+||||||||++|++||+.++.+++.++++.+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 4899999999998777543222111001111 125789999999999999999999999999999987644
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.33 E-value=3e-11 Score=135.57 Aligned_cols=203 Identities=14% Similarity=0.223 Sum_probs=127.3
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCC-ceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChH
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWK-RGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNS 285 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~-rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~ 285 (455)
++.|+|.+...+.|.+.+......-. . ...| ..+||+||||||||++|++||+.+ +.+++.++++.+....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~---~--~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~ 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS---D--PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc---C--CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh
Confidence 55788999988888888765421100 0 0112 258999999999999999999987 4578889888765433
Q ss_pred HHHHHH---------------Hh---cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc--c
Q 012846 286 ELRRVL---------------LS---TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL--W 345 (455)
Q Consensus 286 ~L~~ll---------------~~---~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~--~ 345 (455)
...+++ .. ....+||+|||||.+-+ ...+.|++.+|.- .
T Consensus 642 ~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~---------------------~v~~~Ll~ile~g~l~ 700 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP---------------------DVFNILLQVLDDGRLT 700 (857)
T ss_pred hHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH---------------------HHHHHHHHHHhhCcee
Confidence 332222 11 12348999999997632 2356677777531 1
Q ss_pred cCC-----CCceEEEEecCCC-------------------------CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012846 346 SSC-----GDERIIVFTTNHK-------------------------DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANY 395 (455)
Q Consensus 346 ~~~-----~~~~iiI~tTN~~-------------------------~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 395 (455)
... -.+.+||+|||.. ..+.|+|+. |+|.++.|.+++.+....|++.+
T Consensus 701 d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~ 778 (857)
T PRK10865 701 DGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQ 778 (857)
T ss_pred cCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHH
Confidence 111 1245889999962 124578887 99999999999999999999988
Q ss_pred cCCCCCCcHHHHHHHhhcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 012846 396 LGITDHPLIYEIKEIMQNVRVTPADVGEQLLKNEDPEIALKGLLEFLNA 444 (455)
Q Consensus 396 l~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~ 444 (455)
+... ...+...--...+++.-+..++-...+++...+.+.+.+++
T Consensus 779 L~~l----~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~ 823 (857)
T PRK10865 779 LQRL----YKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQ 823 (857)
T ss_pred HHHH----HHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHH
Confidence 7431 11111110112456655544443445655555555555443
No 143
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.32 E-value=2.4e-11 Score=123.72 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=51.4
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhh-CCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~-g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
.|+|+++.|+.+.-.+.....+...-..+ +...|+++||+||||||||++++++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 47899999998877665432222111111 12235799999999999999999999999999999986643
No 144
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.30 E-value=2.5e-12 Score=113.07 Aligned_cols=105 Identities=29% Similarity=0.420 Sum_probs=72.3
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHH---------------hcCCceEEEEecccccccc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLL---------------STGNRSILVVEDIDCSLEL 311 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~---------------~~~~~sIlliDeiD~l~~~ 311 (455)
++||+||||||||++++.+|..++.+++.+.++...+..+|..... ...+++|++||||+..-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~- 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPP- 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--H-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCH-
Confidence 4899999999999999999999999999999988776655432211 012578999999996532
Q ss_pred ccccCCCccccccCCCccchhhHhhHhhhhhccc----------cCCC-----CceEEEEecCCCC----CCCccccCCC
Q 012846 312 EDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW----------SSCG-----DERIIVFTTNHKD----RLDPAVLRPG 372 (455)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~----------~~~~-----~~~iiI~tTN~~~----~LD~aLlrpg 372 (455)
..+..|+..+|.-. .... .+..||+|+|..+ .+++||++
T Consensus 80 --------------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~-- 137 (139)
T PF07728_consen 80 --------------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD-- 137 (139)
T ss_dssp --------------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--
T ss_pred --------------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--
Confidence 23344444443210 0011 1388999999988 89999999
Q ss_pred ce
Q 012846 373 RM 374 (455)
Q Consensus 373 R~ 374 (455)
||
T Consensus 138 Rf 139 (139)
T PF07728_consen 138 RF 139 (139)
T ss_dssp T-
T ss_pred hC
Confidence 87
No 145
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.6e-11 Score=128.89 Aligned_cols=180 Identities=27% Similarity=0.359 Sum_probs=133.6
Q ss_pred hchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC------ChHHHHHHHHhcC--CceEEEEe
Q 012846 232 KRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH------SNSELRRVLLSTG--NRSILVVE 303 (455)
Q Consensus 232 ~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~------~~~~L~~ll~~~~--~~sIlliD 303 (455)
..++.++..+...+++++++||||||||++++++|+. +.....++..... +..+++.++.... .|+++++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 3556778889999999999999999999999999999 5555555544443 3466777776654 67999999
Q ss_pred ccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCC
Q 012846 304 DIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYC 383 (455)
Q Consensus 304 eiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p 383 (455)
|+|.+.+.+.. .... ......++++..+|++. .+. ++++..||.+..+|+++.+|||++..+.++.|
T Consensus 84 ~~~~~~~~~~~--~~~~--------~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 84 EIDALAPKRSS--DQGE--------VERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred hhhhcccCccc--cccc--------hhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCC
Confidence 99999874443 1110 44567899999999997 455 88888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 012846 384 TPCGFDTLAANYLGITDHPLIYEIKEIMQN-VRVTPADVGEQL 425 (455)
Q Consensus 384 ~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 425 (455)
+...+.++..................++.. .+++.+++..++
T Consensus 151 ~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 151 DEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred CHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHH
Confidence 999998888765543322212233333332 246666666654
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=3.9e-11 Score=134.39 Aligned_cols=156 Identities=18% Similarity=0.252 Sum_probs=108.5
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCC-CCCce-eEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChH
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGK-AWKRG-YLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNS 285 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~-~~~rg-iLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~ 285 (455)
+.|+|+++..+.|.+.+.....+ +.. ..|.| +||+||||||||.+|+++|..+ ...++.++++++....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG------LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 36789999988888887654221 111 12444 7999999999999999999988 4578888887764222
Q ss_pred -------------------HHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-
Q 012846 286 -------------------ELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW- 345 (455)
Q Consensus 286 -------------------~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~- 345 (455)
.|...+.. ...+||+|||||.+-+ ...+.|+..+|.-.
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka~~---------------------~v~~~Llq~ld~g~l 697 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKAHP---------------------DVLELFYQVFDKGVM 697 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhcCH---------------------HHHHHHHHHhhccee
Confidence 23333332 4569999999986532 33466777776321
Q ss_pred -cCCC-----CceEEEEecCCCC-----------------------------CCCccccCCCceeeEEEeCCCCHHHHHH
Q 012846 346 -SSCG-----DERIIVFTTNHKD-----------------------------RLDPAVLRPGRMDVHIYMSYCTPCGFDT 390 (455)
Q Consensus 346 -~~~~-----~~~iiI~tTN~~~-----------------------------~LD~aLlrpgR~d~~I~~~~p~~~~r~~ 390 (455)
...| .+.+||+|||-.. .+.|+|+. |++ .|.|...+.++..+
T Consensus 698 ~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~ 774 (852)
T TIGR03345 698 EDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAA 774 (852)
T ss_pred ecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHH
Confidence 1111 3579999999411 14577777 998 78999999999999
Q ss_pred HHHHHcC
Q 012846 391 LAANYLG 397 (455)
Q Consensus 391 l~~~~l~ 397 (455)
|+...+.
T Consensus 775 Iv~~~L~ 781 (852)
T TIGR03345 775 IVRLKLD 781 (852)
T ss_pred HHHHHHH
Confidence 9998763
No 147
>PRK06620 hypothetical protein; Validated
Probab=99.29 E-value=2.2e-11 Score=115.39 Aligned_cols=149 Identities=16% Similarity=0.236 Sum_probs=91.3
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCC-CCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~-~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~ 282 (455)
..+..+|++++..+.-.. ....+..+... .+. +..+.++||||||+|||+|++++++..+..+. +....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~-a~~~~~~~~~~------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~- 78 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQ-AYNIIKNWQCG------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF- 78 (214)
T ss_pred CCCCCCchhhEecccHHH-HHHHHHHHHHc------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-
Confidence 344557998765442222 23333333221 122 22367999999999999999999998875332 21111
Q ss_pred ChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCC
Q 012846 283 SNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKD 362 (455)
Q Consensus 283 ~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~ 362 (455)
.. .. .....+|+|||||.+- ...+..++|.+. .. +..++|.++..|.
T Consensus 79 -~~---~~---~~~~d~lliDdi~~~~---------------------~~~lf~l~N~~~---e~--g~~ilits~~~p~ 125 (214)
T PRK06620 79 -NE---EI---LEKYNAFIIEDIENWQ---------------------EPALLHIFNIIN---EK--QKYLLLTSSDKSR 125 (214)
T ss_pred -ch---hH---HhcCCEEEEeccccch---------------------HHHHHHHHHHHH---hc--CCEEEEEcCCCcc
Confidence 11 11 1245799999999431 123445555443 22 2366666665555
Q ss_pred C--CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHcCC
Q 012846 363 R--LDPAVLRPGRMD--VHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 363 ~--LD~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
. + |+|.. |+. ..+.+..|+.+.+..+++.....
T Consensus 126 ~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 126 NFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred ccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 4 5 78887 873 57999999999999999876643
No 148
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.28 E-value=6.7e-11 Score=133.15 Aligned_cols=201 Identities=16% Similarity=0.239 Sum_probs=125.5
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCC-CC-ceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChH
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKA-WK-RGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNS 285 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~-~~-rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~ 285 (455)
..|+|++...+.|.+.+...... +..+ .| ..+||+||||||||++|++||..+ +.+++.++++.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g------l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~ 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG------LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc------CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc
Confidence 46889998888888877654221 0011 12 358999999999999999999987 4688999988765433
Q ss_pred HHHHHH---------------H---hcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc--c
Q 012846 286 ELRRVL---------------L---STGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL--W 345 (455)
Q Consensus 286 ~L~~ll---------------~---~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~--~ 345 (455)
...+++ . .....+||+|||||.+-+ ...+.||+.||.- .
T Consensus 639 ~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------------~v~~~Ll~~l~~g~l~ 697 (852)
T TIGR03346 639 SVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------------DVFNVLLQVLDDGRLT 697 (852)
T ss_pred hHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------------HHHHHHHHHHhcCcee
Confidence 222221 1 122457999999997643 3356677777521 1
Q ss_pred cCC-----CCceEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012846 346 SSC-----GDERIIVFTTNHKD-------------------------RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANY 395 (455)
Q Consensus 346 ~~~-----~~~~iiI~tTN~~~-------------------------~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 395 (455)
... -.+.|||+|||... .+.|.|+. |+|.++.|.+++.+....|+..+
T Consensus 698 d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~ 775 (852)
T TIGR03346 698 DGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQ 775 (852)
T ss_pred cCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHH
Confidence 111 13578999999721 13466776 99999999999999999999987
Q ss_pred cCCCCCCcHHHHHHHhhcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 012846 396 LGITDHPLIYEIKEIMQNVRVTPADVGEQLLKNEDPEIALKGLLEFLNA 444 (455)
Q Consensus 396 l~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~ 444 (455)
+... ...+...--...+++.-+..++-...++....+.|.+++++
T Consensus 776 L~~l----~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 820 (852)
T TIGR03346 776 LGRL----RKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQR 820 (852)
T ss_pred HHHH----HHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHH
Confidence 6321 11111110013466655554443333444444444444443
No 149
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.28 E-value=4.3e-11 Score=120.77 Aligned_cols=130 Identities=25% Similarity=0.287 Sum_probs=90.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHH------HH------HHhcCC---c---eEEEEeccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELR------RV------LLSTGN---R---SILVVEDID 306 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~------~l------l~~~~~---~---sIlliDeiD 306 (455)
.+.+||-||||||||++|+++|..++.+++.++|+.-....++. .. +.-... . +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 46799999999999999999999999999999998665433321 11 000111 1 399999999
Q ss_pred cccccccccCCCccccccCCCccchhhHhhHhhhhhc-------cc-cCCCCceEEEEecC-----CCCCCCccccCCCc
Q 012846 307 CSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG-------LW-SSCGDERIIVFTTN-----HKDRLDPAVLRPGR 373 (455)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg-------~~-~~~~~~~iiI~tTN-----~~~~LD~aLlrpgR 373 (455)
...+ .+.+.||..|+. .. -......++|+|+| ....|++|+++ |
T Consensus 123 ra~p---------------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--R 179 (329)
T COG0714 123 RAPP---------------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--R 179 (329)
T ss_pred cCCH---------------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--h
Confidence 7543 345666666654 11 11224577888889 44568999999 9
Q ss_pred eeeEEEeCCC-CHHHHHHHHHHHcC
Q 012846 374 MDVHIYMSYC-TPCGFDTLAANYLG 397 (455)
Q Consensus 374 ~d~~I~~~~p-~~~~r~~l~~~~l~ 397 (455)
|...++++|| ..++...+......
T Consensus 180 f~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 180 FLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEEEEecCCCCchHHHHHHHHhCcc
Confidence 9999999999 55555555554443
No 150
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.27 E-value=3e-11 Score=121.72 Aligned_cols=154 Identities=19% Similarity=0.276 Sum_probs=101.8
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-------ceE------
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF-------DIY------ 274 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~-------~~~------ 274 (455)
-+|++|+|.++.|..|...+.. |...|+||.||+|||||++++++++.+.. ++.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p 80 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDP 80 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCCh
Confidence 3799999999999988776542 22358999999999999999999887631 111
Q ss_pred ----------------------Eeecccc---CChHH------HHHHHHh-----------cCCceEEEEeccccccccc
Q 012846 275 ----------------------DLELSAV---HSNSE------LRRVLLS-----------TGNRSILVVEDIDCSLELE 312 (455)
Q Consensus 275 ----------------------~l~~~~~---~~~~~------L~~ll~~-----------~~~~sIlliDeiD~l~~~~ 312 (455)
.+.+..+ .+++. +.+.|.. ....++|++|||+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~-- 158 (350)
T CHL00081 81 ELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD-- 158 (350)
T ss_pred hhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH--
Confidence 0000000 01111 2222221 22468999999998754
Q ss_pred cccCCCccccccCCCccchhhHhhHhhhhhc---------cccCCCCceEEEEecCCCC-CCCccccCCCceeeEEEeCC
Q 012846 313 DRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG---------LWSSCGDERIIVFTTNHKD-RLDPAVLRPGRMDVHIYMSY 382 (455)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg---------~~~~~~~~~iiI~tTN~~~-~LD~aLlrpgR~d~~I~~~~ 382 (455)
.+.+.|+..|+. ........+++|+|.|..+ .+.++|+. ||.++|.+.+
T Consensus 159 -------------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~ 217 (350)
T CHL00081 159 -------------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRT 217 (350)
T ss_pred -------------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCC
Confidence 234556766642 2111223456666666544 59999999 9999999999
Q ss_pred CC-HHHHHHHHHHHcC
Q 012846 383 CT-PCGFDTLAANYLG 397 (455)
Q Consensus 383 p~-~~~r~~l~~~~l~ 397 (455)
|+ .+.+.+|++....
T Consensus 218 ~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 218 VKDPELRVKIVEQRTS 233 (350)
T ss_pred CCChHHHHHHHHhhhc
Confidence 98 5889899987543
No 151
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.27 E-value=1.9e-11 Score=120.16 Aligned_cols=150 Identities=21% Similarity=0.298 Sum_probs=97.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCce-EEeeccccC-
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDI-YDLELSAVH- 282 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~-~~l~~~~~~- 282 (455)
-.|.++++.+|++.+.-+ ...+...+.. + --.+++|+||||||||+||+.|++..+-+- ..++++...
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ieq-------~--~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a 201 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ-------N--RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA 201 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHHc-------C--CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc
Confidence 457788888887765433 1222222221 1 123799999999999999999999887662 233444433
Q ss_pred ChHHHHHHHHhc-------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEE
Q 012846 283 SNSELRRVLLST-------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIV 355 (455)
Q Consensus 283 ~~~~L~~ll~~~-------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI 355 (455)
.-.+++.+|.+. .++.|||||||+.+-. .....||-.++ +| .+++|
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk---------------------sQQD~fLP~VE-----~G-~I~lI 254 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK---------------------SQQDTFLPHVE-----NG-DITLI 254 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh---------------------hhhhcccceec-----cC-ceEEE
Confidence 346788888665 3689999999998732 11123444332 12 36666
Q ss_pred E-ecCCC-CCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 012846 356 F-TTNHK-DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAAN 394 (455)
Q Consensus 356 ~-tTN~~-~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~ 394 (455)
+ ||.+| =.|..||+. |+ .++-+...+.+....|+.+
T Consensus 255 GATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred ecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHH
Confidence 5 56566 478999998 76 4556667777777777776
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26 E-value=6.2e-11 Score=133.01 Aligned_cols=201 Identities=18% Similarity=0.215 Sum_probs=123.9
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCc-eeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHH
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKR-GYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSE 286 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~r-giLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~ 286 (455)
+.|+|++...+.|.+.+...... ... ...|. .+||+||||||||++|++||+.+ +.+++.++++++.....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~--~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~ 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKN--PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHT 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccC--CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccccc
Confidence 46789888888887776533211 000 11122 48999999999999999999987 46788888877643222
Q ss_pred -------------------HHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc--
Q 012846 287 -------------------LRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-- 345 (455)
Q Consensus 287 -------------------L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-- 345 (455)
|...+.. ...+||+|||||.+-+ ...+.|+..||.-.
T Consensus 584 ~~~l~g~~~gyvg~~~~~~l~~~~~~-~p~~VvllDeieka~~---------------------~v~~~Llq~le~g~~~ 641 (821)
T CHL00095 584 VSKLIGSPPGYVGYNEGGQLTEAVRK-KPYTVVLFDEIEKAHP---------------------DIFNLLLQILDDGRLT 641 (821)
T ss_pred HHHhcCCCCcccCcCccchHHHHHHh-CCCeEEEECChhhCCH---------------------HHHHHHHHHhccCcee
Confidence 2222221 2348999999997643 34567777777321
Q ss_pred cCC-----CCceEEEEecCCCCC-------------------------------------CCccccCCCceeeEEEeCCC
Q 012846 346 SSC-----GDERIIVFTTNHKDR-------------------------------------LDPAVLRPGRMDVHIYMSYC 383 (455)
Q Consensus 346 ~~~-----~~~~iiI~tTN~~~~-------------------------------------LD~aLlrpgR~d~~I~~~~p 383 (455)
... -.+.+||+|||.... +.|+|+. |+|..|.|...
T Consensus 642 d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL 719 (821)
T CHL00095 642 DSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQL 719 (821)
T ss_pred cCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCC
Confidence 111 135799999995311 2356666 99999999999
Q ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHhhcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 012846 384 TPCGFDTLAANYLGITDHPLIYEIKEIMQNVRVTPADVGEQLLKNEDPEIALKGLLEFLNA 444 (455)
Q Consensus 384 ~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~ 444 (455)
+.++..+|+...+... ...+...--...+++.-+..++....++....+.+...+++
T Consensus 720 ~~~~l~~Iv~~~l~~l----~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~ 776 (821)
T CHL00095 720 TKNDVWEIAEIMLKNL----FKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMR 776 (821)
T ss_pred CHHHHHHHHHHHHHHH----HHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 9999999998877321 11111110012466665554444434544444544444443
No 153
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.24 E-value=1.5e-10 Score=107.26 Aligned_cols=124 Identities=20% Similarity=0.282 Sum_probs=90.3
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCC------------------------ceEEeecccc-CChHHHHHHHHhcC---
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNF------------------------DIYDLELSAV-HSNSELRRVLLSTG--- 295 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~------------------------~~~~l~~~~~-~~~~~L~~ll~~~~--- 295 (455)
.+..+|||||||+|||++++++++.+.. ++..++.... ..-+.+++++....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 3568999999999999999999998743 2333332211 23356666554432
Q ss_pred ---CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCC
Q 012846 296 ---NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPG 372 (455)
Q Consensus 296 ---~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpg 372 (455)
.+.|++|||+|.+.. ...+.||..|+.. ++..++|++||++..+.+++.+
T Consensus 93 ~~~~~kviiide~~~l~~---------------------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s-- 145 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE---------------------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS-- 145 (188)
T ss_pred ccCCeEEEEEechhhhCH---------------------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--
Confidence 457999999998743 2246688888663 2456778888888999999998
Q ss_pred ceeeEEEeCCCCHHHHHHHHHHH
Q 012846 373 RMDVHIYMSYCTPCGFDTLAANY 395 (455)
Q Consensus 373 R~d~~I~~~~p~~~~r~~l~~~~ 395 (455)
|+ ..++++.|+.++...+++..
T Consensus 146 r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 146 RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred hc-EEeeCCCCCHHHHHHHHHHc
Confidence 77 48999999999988887765
No 154
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.24 E-value=7.9e-11 Score=123.35 Aligned_cols=187 Identities=12% Similarity=0.233 Sum_probs=113.9
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEeecccc
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLELSAV 281 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~~~~~ 281 (455)
+.+|++.+..+.-. .....+..+...+ |.. ..+++||||+|+|||+|++|+++++ +..++.++..++
T Consensus 111 ~~tFdnFv~g~~n~-~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSNE-QAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcHH-HHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 46788876433222 2233333333221 222 2479999999999999999999965 467777776655
Q ss_pred CCh---------HHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCce
Q 012846 282 HSN---------SELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDER 352 (455)
Q Consensus 282 ~~~---------~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ 352 (455)
... ..+..+........+|+||||+.+.. ...+...|...++.+... + .
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~-------------------k~~~~e~lf~l~N~~~~~-~-k- 240 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY-------------------KEKTNEIFFTIFNNFIEN-D-K- 240 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC-------------------CHHHHHHHHHHHHHHHHc-C-C-
Confidence 311 22333333445678999999997642 112233444444444332 1 2
Q ss_pred EEEEecCC-CC---CCCccccCCCce--eeEEEeCCCCHHHHHHHHHHHcCCCCC--CcHHHHHH-HhhcCCCCHHHHHH
Q 012846 353 IIVFTTNH-KD---RLDPAVLRPGRM--DVHIYMSYCTPCGFDTLAANYLGITDH--PLIYEIKE-IMQNVRVTPADVGE 423 (455)
Q Consensus 353 iiI~tTN~-~~---~LD~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~--~l~~~i~~-l~~~~~~tpa~i~~ 423 (455)
.||+|+|. |+ .+++.|.. || ...+.+..|+.+++.++++..+...+. .+.+++.. ++....-++..+..
T Consensus 241 ~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~g 318 (450)
T PRK14087 241 QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKG 318 (450)
T ss_pred cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHH
Confidence 35666664 43 35788888 77 588999999999999999998865432 34444433 44444556665555
Q ss_pred HH
Q 012846 424 QL 425 (455)
Q Consensus 424 ~l 425 (455)
.|
T Consensus 319 aL 320 (450)
T PRK14087 319 SV 320 (450)
T ss_pred HH
Confidence 54
No 155
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=4.4e-10 Score=112.42 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=119.8
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----------------
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----------------- 271 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----------------- 271 (455)
.|++|+|.+.+++.+...+.. | ..+..|||+||+|+||+++|.++|+.+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 489999999999888776631 1 23568999999999999999999988632
Q ss_pred -ceEEeecccc-----------------------CChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccc
Q 012846 272 -DIYDLELSAV-----------------------HSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTV 321 (455)
Q Consensus 272 -~~~~l~~~~~-----------------------~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~ 321 (455)
+++.+..... ..-+.++++..... ...|++||++|.+-.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 2233333110 01134555543332 457999999997742
Q ss_pred cccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCC
Q 012846 322 NVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH 401 (455)
Q Consensus 322 ~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~ 401 (455)
...+.||..|+.. + ..++|++|++++.|-|++.+ |+ ..+.|+.++.++..+++........
T Consensus 139 ----------~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~- 199 (314)
T PRK07399 139 ----------AAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI- 199 (314)
T ss_pred ----------HHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc-
Confidence 2347788888764 2 35678888899999999998 87 6899999999999888886543221
Q ss_pred CcHHHHHHHhhcCCCCHHHHHHHH
Q 012846 402 PLIYEIKEIMQNVRVTPADVGEQL 425 (455)
Q Consensus 402 ~l~~~i~~l~~~~~~tpa~i~~~l 425 (455)
...+...++..+..+|......+
T Consensus 200 -~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 200 -LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred -chhHHHHHHHHcCCCHHHHHHHH
Confidence 11123455555566776665544
No 156
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.8e-10 Score=113.10 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=110.1
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc-----eEEeeccccCChHH
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD-----IYDLELSAVHSNSE 286 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~-----~~~l~~~~~~~~~~ 286 (455)
.+.+.++..+++...+..++.+. .|.++++|||||||||.+++-++.++.-. ++.++|....+..+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~---------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGE---------RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCC---------CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 37888889999988877666542 24469999999999999999999988544 88999988765322
Q ss_pred H-------------------------HHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhh
Q 012846 287 L-------------------------RRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341 (455)
Q Consensus 287 L-------------------------~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 341 (455)
+ .+.+.......||++||+|.+.. .....+-.|+...
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~------------------~~~~~LY~L~r~~ 150 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD------------------KDGEVLYSLLRAP 150 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc------------------ccchHHHHHHhhc
Confidence 2 12222223467999999999975 1223444555443
Q ss_pred hccccCCCCceEEEEecCCC---CCCCccccCCCce-eeEEEeCCCCHHHHHHHHHHHcC
Q 012846 342 DGLWSSCGDERIIVFTTNHK---DRLDPAVLRPGRM-DVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 342 Dg~~~~~~~~~iiI~tTN~~---~~LD~aLlrpgR~-d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
+.. ...+++|+.+|.. +.+||.+.+ ++ ..+|.||+.+.+|...|++.-..
T Consensus 151 ~~~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 151 GEN----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred ccc----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 333 3457888888876 568888876 55 56699999999999999997654
No 157
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=7.8e-10 Score=111.25 Aligned_cols=125 Identities=19% Similarity=0.271 Sum_probs=94.7
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCC------------------------ceEEeeccc---cCChHHHHHHHHhcC-
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNF------------------------DIYDLELSA---VHSNSELRRVLLSTG- 295 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~------------------------~~~~l~~~~---~~~~~~L~~ll~~~~- 295 (455)
.+.+|||+||+|+||+++|.++|+.+.. +++.+.... ...-++++++.....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 3668999999999999999999998743 455554432 223467777664432
Q ss_pred -----CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccC
Q 012846 296 -----NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLR 370 (455)
Q Consensus 296 -----~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlr 370 (455)
..-|++||++|.+-. ...+.||..|+.. +++.++|++|++++.|.|++++
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~---------------------~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~S 155 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNR---------------------NAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKS 155 (328)
T ss_pred ccccCCCeEEEECChhhCCH---------------------HHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHh
Confidence 356889999998742 3358889888763 3568899999999999999998
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 371 PGRMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 371 pgR~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
|+. .+.|+.|+.++....+....
T Consensus 156 --Rc~-~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 156 --RCQ-QQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred --hce-eeeCCCcCHHHHHHHHHHhc
Confidence 884 59999999988877776543
No 158
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.19 E-value=2.1e-10 Score=115.45 Aligned_cols=153 Identities=20% Similarity=0.291 Sum_probs=100.1
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC-------CceE-------
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN-------FDIY------- 274 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~-------~~~~------- 274 (455)
+|..|+|.+++|..+.-.+.. |...++||.||||||||++++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 489999999999887654432 1234799999999999999999998772 2111
Q ss_pred --------------------------Eeecc----ccCChHHHHHHHH-----------hcCCceEEEEecccccccccc
Q 012846 275 --------------------------DLELS----AVHSNSELRRVLL-----------STGNRSILVVEDIDCSLELED 313 (455)
Q Consensus 275 --------------------------~l~~~----~~~~~~~L~~ll~-----------~~~~~sIlliDeiD~l~~~~~ 313 (455)
++..+ .+...-.+.+.+. ...++.+|+||||+.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 10000 0111122233221 123568999999998643
Q ss_pred ccCCCccccccCCCccchhhHhhHhhhhhc---------cccCCCCceEEEEecCCCC-CCCccccCCCceeeEEEeCCC
Q 012846 314 RQAQPTTVNVLKPLRPMQVTLSGLLNFLDG---------LWSSCGDERIIVFTTNHKD-RLDPAVLRPGRMDVHIYMSYC 383 (455)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg---------~~~~~~~~~iiI~tTN~~~-~LD~aLlrpgR~d~~I~~~~p 383 (455)
.+.+.|++.|+. ........+++|+|+|..+ .++++|+. ||.+++.+++|
T Consensus 146 ------------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p 205 (337)
T TIGR02030 146 ------------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTV 205 (337)
T ss_pred ------------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCC
Confidence 234566666642 2111223467777777544 68999999 99999999999
Q ss_pred CH-HHHHHHHHHHcC
Q 012846 384 TP-CGFDTLAANYLG 397 (455)
Q Consensus 384 ~~-~~r~~l~~~~l~ 397 (455)
.. +++.+|+++...
T Consensus 206 ~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 206 RDVELRVEIVERRTE 220 (337)
T ss_pred CCHHHHHHHHHhhhh
Confidence 87 888888887543
No 159
>PRK09087 hypothetical protein; Validated
Probab=99.17 E-value=4.3e-10 Score=107.41 Aligned_cols=131 Identities=11% Similarity=0.142 Sum_probs=83.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLK 325 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~ 325 (455)
+.++|+||+|+|||+|++++++..+..++.. ..+. ..-+ ... ...+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~-~~~~----~~~-~~~~l~iDDi~~~~~--------------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIG-SDAA----NAA-AEGPVLIEDIDAGGF--------------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcc-hHHH----Hhh-hcCeEEEECCCCCCC---------------
Confidence 3489999999999999999999876654433 2221 1111 111 225889999996521
Q ss_pred CCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHcCCCC
Q 012846 326 PLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDR---LDPAVLRPGRMD--VHIYMSYCTPCGFDTLAANYLGITD 400 (455)
Q Consensus 326 ~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~---LD~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~ 400 (455)
.+ .+|+..++.+... +..+||.++..|.. ..|.|.. |+. ..+++..|+.+.+..+++..+...+
T Consensus 102 ----~~---~~lf~l~n~~~~~--g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 102 ----DE---TGLFHLINSVRQA--GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred ----CH---HHHHHHHHHHHhC--CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 11 2344444444332 23455555444533 3678887 874 8999999999999999999886655
Q ss_pred CCcHHHHHHH
Q 012846 401 HPLIYEIKEI 410 (455)
Q Consensus 401 ~~l~~~i~~l 410 (455)
..+.+++...
T Consensus 171 ~~l~~ev~~~ 180 (226)
T PRK09087 171 LYVDPHVVYY 180 (226)
T ss_pred CCCCHHHHHH
Confidence 4454444333
No 160
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=1.8e-09 Score=108.95 Aligned_cols=146 Identities=18% Similarity=0.289 Sum_probs=104.5
Q ss_pred Ccccccc-cHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC----------------
Q 012846 209 TFDTLAM-EAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF---------------- 271 (455)
Q Consensus 209 ~f~~l~g-~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~---------------- 271 (455)
.|++|.| .+.+++.+...+. . ...+..||||||+|+||+++|.++|+.+-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----~--------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----K--------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----c--------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4788888 7777776665542 1 134678999999999999999999988632
Q ss_pred --------ceEEeecccc-CChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhHhh
Q 012846 272 --------DIYDLELSAV-HSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSG 336 (455)
Q Consensus 272 --------~~~~l~~~~~-~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 336 (455)
++..+....- ..-++++.+....+ ..-|++|||+|.+.. ...+.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---------------------~a~Na 129 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---------------------SAANS 129 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH---------------------HHHHH
Confidence 2333332211 12356666664432 456999999997632 23578
Q ss_pred HhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 012846 337 LLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAAN 394 (455)
Q Consensus 337 LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~ 394 (455)
||..|+.. ++..++|++|+.+..|.|++.+ |+ .+++++.|+.++....++.
T Consensus 130 LLK~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 130 LLKFLEEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHhcCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 88888764 4567888899999999999998 77 6899999999887766654
No 161
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.14 E-value=5.4e-10 Score=115.15 Aligned_cols=132 Identities=16% Similarity=0.309 Sum_probs=79.8
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc-----eEEeecc-----
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD-----IYDLELS----- 279 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~-----~~~l~~~----- 279 (455)
++++.+.++..+.+...+. .++.++|+||||||||++|+++|..+... +..+...
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 5566666666655544432 24689999999999999999999988532 1111111
Q ss_pred -cc----C--------ChHHHHHHHHhc----CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhh
Q 012846 280 -AV----H--------SNSELRRVLLST----GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD 342 (455)
Q Consensus 280 -~~----~--------~~~~L~~ll~~~----~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD 342 (455)
++ . ...-+.+++..+ ..++||+||||+..-..+ .+..++..||
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k--------------------iFGel~~lLE 298 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK--------------------VFGEVMMLME 298 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH--------------------hhhhhhhhcc
Confidence 10 0 012233333333 257999999999653211 1111111111
Q ss_pred --------------------ccccCCCCceEEEEecCCCC----CCCccccCCCceeeEEEeC
Q 012846 343 --------------------GLWSSCGDERIIVFTTNHKD----RLDPAVLRPGRMDVHIYMS 381 (455)
Q Consensus 343 --------------------g~~~~~~~~~iiI~tTN~~~----~LD~aLlrpgR~d~~I~~~ 381 (455)
.+ ..+.++.||+|+|..+ .+|.||+| ||. .|++.
T Consensus 299 ~~~rg~~~~v~l~y~e~d~e~f--~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~ 356 (459)
T PRK11331 299 HDKRGENWSVPLTYSENDEERF--YVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIE 356 (459)
T ss_pred ccccccccceeeeccccccccc--cCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEec
Confidence 11 1236799999999887 79999999 995 45554
No 162
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.13 E-value=1.8e-09 Score=108.62 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=51.4
Q ss_pred Ccc-cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-------ceEEeec
Q 012846 209 TFD-TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF-------DIYDLEL 278 (455)
Q Consensus 209 ~f~-~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~-------~~~~l~~ 278 (455)
-|+ +++|.++.++++++.+...... +...++.++|+||||||||++|++||+.++. ++|.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g-------~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQG-------LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 377 8999999999998877655421 1233578899999999999999999999976 8998876
No 163
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=6.4e-10 Score=119.98 Aligned_cols=203 Identities=20% Similarity=0.213 Sum_probs=119.8
Q ss_pred eecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEE-eecc-
Q 012846 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD-LELS- 279 (455)
Q Consensus 202 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~-l~~~- 279 (455)
+....|.++++|++.++..+.+...+.... .+...++.++|+||||||||++++++|+.++..+.. .+..
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~ 146 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTL 146 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 467889999999999988887776654321 122334569999999999999999999999876533 1110
Q ss_pred -------------------c-cCChHHHHHHHHhc------------CCceEEEEeccccccccccccCCCccccccCCC
Q 012846 280 -------------------A-VHSNSELRRVLLST------------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPL 327 (455)
Q Consensus 280 -------------------~-~~~~~~L~~ll~~~------------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~ 327 (455)
. ......+..++..+ .++.||||||+|.++.
T Consensus 147 ~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~----------------- 209 (637)
T TIGR00602 147 PDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY----------------- 209 (637)
T ss_pred hcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch-----------------
Confidence 0 01123444444332 2467999999997753
Q ss_pred ccchhhHhhHhh-hhhccccCCCCceEEEEecCCCC--------------CCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 012846 328 RPMQVTLSGLLN-FLDGLWSSCGDERIIVFTTNHKD--------------RLDPAVLRPGRMDVHIYMSYCTPCGFDTLA 392 (455)
Q Consensus 328 ~~~~~~ls~LL~-~lDg~~~~~~~~~iiI~tTN~~~--------------~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~ 392 (455)
.....+..+|. ... . .+.-.+|+++|..+. .|.++++..-|+ .+|.|...+....++.+
T Consensus 210 -r~~~~lq~lLr~~~~---e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L 283 (637)
T TIGR00602 210 -RDTRALHEILRWKYV---S-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFL 283 (637)
T ss_pred -hhHHHHHHHHHHHhh---c-CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHH
Confidence 11123444444 111 1 121123333442222 133677742355 48999999999988888
Q ss_pred HHHcCCCCCCcHHHHHHHhhcCCC-CHHHHHHHHH-cCCCHHHHHHHHHHHH
Q 012846 393 ANYLGITDHPLIYEIKEIMQNVRV-TPADVGEQLL-KNEDPEIALKGLLEFL 442 (455)
Q Consensus 393 ~~~l~~~~~~l~~~i~~l~~~~~~-tpa~i~~~l~-~~~~~~~al~~l~~~l 442 (455)
+..+..+..... ....+ ++..+..++. ..+|...|+..|.-+.
T Consensus 284 ~rIl~~E~~~~~-------~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 284 NRIVTIEAKKNG-------EKIKVPKKTSVELLCQGCSGDIRSAINSLQFSS 328 (637)
T ss_pred HHHHHhhhhccc-------cccccCCHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 877754321111 11112 2344444332 4578888888876653
No 164
>PRK08116 hypothetical protein; Validated
Probab=99.11 E-value=4e-10 Score=110.31 Aligned_cols=117 Identities=19% Similarity=0.284 Sum_probs=75.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCCh----------HHHHHHHHhcCCceEEEEecccccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSN----------SELRRVLLSTGNRSILVVEDIDCSLEL 311 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~----------~~L~~ll~~~~~~sIlliDeiD~l~~~ 311 (455)
+.|++|+||||||||+|+.|||+++ +.+++.++..++... .....++.......+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~-- 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAER-- 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCC--
Confidence 4689999999999999999999986 678888776554210 1222344445566799999996421
Q ss_pred ccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCC-CC----CCccccCCCce---eeEEEeCCC
Q 012846 312 EDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHK-DR----LDPAVLRPGRM---DVHIYMSYC 383 (455)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~-~~----LD~aLlrpgR~---d~~I~~~~p 383 (455)
...-....|.+.+|..... +..+|+|||.+ +. ++..+.. |+ ...|.+.-+
T Consensus 192 -----------------~t~~~~~~l~~iin~r~~~---~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~ 249 (268)
T PRK08116 192 -----------------DTEWAREKVYNIIDSRYRK---GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGK 249 (268)
T ss_pred -----------------CCHHHHHHHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCc
Confidence 1122345566666654322 24578888865 33 4666766 64 344666655
Q ss_pred CH
Q 012846 384 TP 385 (455)
Q Consensus 384 ~~ 385 (455)
+.
T Consensus 250 d~ 251 (268)
T PRK08116 250 SY 251 (268)
T ss_pred Ch
Confidence 54
No 165
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.10 E-value=1.2e-10 Score=106.34 Aligned_cols=107 Identities=24% Similarity=0.404 Sum_probs=74.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCC----ceEEeeccccCC----hHHHHHHHHhcC------CceEEEEecccccccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNF----DIYDLELSAVHS----NSELRRVLLSTG------NRSILVVEDIDCSLEL 311 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~----~~~~l~~~~~~~----~~~L~~ll~~~~------~~sIlliDeiD~l~~~ 311 (455)
..+||.||+|||||.||+++|..+.. +++.++++.+.. ...+..++.... ...||||||||.+.+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~ 83 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS 83 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc
Confidence 46899999999999999999999996 999999999987 444555554432 3469999999998753
Q ss_pred ccccCCCccccccCCCccchhhHhhHhhhhhcccc--CCC-----CceEEEEecCCCC
Q 012846 312 EDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWS--SCG-----DERIIVFTTNHKD 362 (455)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~--~~~-----~~~iiI~tTN~~~ 362 (455)
... ..+. ......+.||..||+-.- ..+ .+.|+|+|+|--.
T Consensus 84 ---~~~--~~~v-----~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 84 ---NSG--GADV-----SGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp ---TTT--CSHH-----HHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ---ccc--cchh-----hHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 100 0000 223456778888874211 111 3589999999543
No 166
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.08 E-value=5.8e-09 Score=104.33 Aligned_cols=140 Identities=20% Similarity=0.265 Sum_probs=97.9
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC---------------------
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN--------------------- 270 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~--------------------- 270 (455)
++++.+.....+....... | ..+..+||+||||||||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4555555555555544321 1 2234799999999999999999999887
Q ss_pred ---CceEEeeccccCC----hHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhH
Q 012846 271 ---FDIYDLELSAVHS----NSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGL 337 (455)
Q Consensus 271 ---~~~~~l~~~~~~~----~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 337 (455)
-+++.++.++... .+.++++..... ..-|++|||+|.+.. ...+.|
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~---------------------~A~nal 129 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE---------------------DAANAL 129 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH---------------------HHHHHH
Confidence 5888888888765 345555554432 346999999998753 223566
Q ss_pred hhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHH
Q 012846 338 LNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDT 390 (455)
Q Consensus 338 L~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~ 390 (455)
+..+... .....+|++||.++.+-|.+.. |+ ..+.|+.|+...+..
T Consensus 130 lk~lEep----~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 130 LKTLEEP----PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred HHHhccC----CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHH
Confidence 6666543 3457899999999999998887 77 578887755544433
No 167
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=1.1e-08 Score=103.17 Aligned_cols=125 Identities=19% Similarity=0.208 Sum_probs=93.2
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcCCc-------------------------eEEeeccc-----------------
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFD-------------------------IYDLELSA----------------- 280 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~~~-------------------------~~~l~~~~----------------- 280 (455)
..+.+|||+||+|+||+++|.++|+.+... ++.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 446799999999999999999999877331 23332211
Q ss_pred ------------cCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhh
Q 012846 281 ------------VHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD 342 (455)
Q Consensus 281 ------------~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD 342 (455)
...-++++.+..... ..-|++||++|.+-. ..-+.||..|+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------------~AaNaLLKtLE 157 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------------AAANALLKTLE 157 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------------HHHHHHHHHhc
Confidence 112356666665443 345999999998743 33588999988
Q ss_pred ccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012846 343 GLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANY 395 (455)
Q Consensus 343 g~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 395 (455)
. ++++.++|++|++++.|.|++++ |+ ..+.|+.|+.++..+.+...
T Consensus 158 E----Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 158 E----PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred C----CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 5 35678999999999999999998 88 68999999999888777653
No 168
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.05 E-value=8.4e-10 Score=106.32 Aligned_cols=98 Identities=21% Similarity=0.392 Sum_probs=68.2
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccc
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSA 280 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~ 280 (455)
..++.+|++.....+..+.+...+..+.... . ....+++|+||||||||+|+.|||+++ +..++.++..+
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 4456789998765544445556665555321 1 113589999999999999999999988 67777777666
Q ss_pred cCC---------hHHHHHHHHhcCCceEEEEeccccc
Q 012846 281 VHS---------NSELRRVLLSTGNRSILVVEDIDCS 308 (455)
Q Consensus 281 ~~~---------~~~L~~ll~~~~~~sIlliDeiD~l 308 (455)
+.. +....+++.......+|+|||+++.
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 531 1223455666667889999999875
No 169
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.04 E-value=1.5e-09 Score=112.78 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=80.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCC--ceEEeecc-----ccCChHHHHHH-----HHhc-----CCceEEEEecccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNF--DIYDLELS-----AVHSNSELRRV-----LLST-----GNRSILVVEDIDC 307 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~--~~~~l~~~-----~~~~~~~L~~l-----l~~~-----~~~sIlliDeiD~ 307 (455)
...+||+||||||||++|++++...+. ++..+.+. ++.....+... |... ....+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 457999999999999999999997753 33333222 11111111111 1111 1234899999975
Q ss_pred ccccccccCCCccccccCCCccchhhHhhHhhhhh-ccccCCC-----CceEEEEecCCCC---CCCccccCCCceeeEE
Q 012846 308 SLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD-GLWSSCG-----DERIIVFTTNHKD---RLDPAVLRPGRMDVHI 378 (455)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD-g~~~~~~-----~~~iiI~tTN~~~---~LD~aLlrpgR~d~~I 378 (455)
+. ..+.+.||..|. +.....+ ..++++++||... ...+|++. ||-+.|
T Consensus 119 as---------------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri 175 (498)
T PRK13531 119 AG---------------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRL 175 (498)
T ss_pred CC---------------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEE
Confidence 43 356788888883 3322211 2367777888432 23358998 999999
Q ss_pred EeCCCC-HHHHHHHHHHH
Q 012846 379 YMSYCT-PCGFDTLAANY 395 (455)
Q Consensus 379 ~~~~p~-~~~r~~l~~~~ 395 (455)
.+|+|+ .+++..|+...
T Consensus 176 ~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 176 WLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCCchHHHHHHHHcc
Confidence 999997 56777787754
No 170
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.04 E-value=1.4e-10 Score=99.56 Aligned_cols=104 Identities=25% Similarity=0.320 Sum_probs=60.3
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHH--HHh-------cC---CceEEEEecccccccccccc
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRV--LLS-------TG---NRSILVVEDIDCSLELEDRQ 315 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~l--l~~-------~~---~~sIlliDeiD~l~~~~~~~ 315 (455)
+||.|+||+|||++|+++|..++..+-.+.++.-...+++.-. +.. .. -..|+++|||....+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp----- 76 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP----- 76 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H-----
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH-----
Confidence 7999999999999999999999999999988632222222111 000 00 136999999986543
Q ss_pred CCCccccccCCCccchhhHhhHhhhhh-------ccccCCCCceEEEEecCCCC-----CCCccccCCCce
Q 012846 316 AQPTTVNVLKPLRPMQVTLSGLLNFLD-------GLWSSCGDERIIVFTTNHKD-----RLDPAVLRPGRM 374 (455)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~ls~LL~~lD-------g~~~~~~~~~iiI~tTN~~~-----~LD~aLlrpgR~ 374 (455)
.+.+.||..|. |.....++..+||+|-|..+ .|+.|++. ||
T Consensus 77 ----------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 77 ----------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ----------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ----------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 45688888774 32333445678899999776 67888887 77
No 171
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.03 E-value=6.1e-10 Score=121.53 Aligned_cols=153 Identities=20% Similarity=0.288 Sum_probs=102.2
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-------------------
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL------------------- 269 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l------------------- 269 (455)
.|..|+|.+.+|..+.-.+. . +.-.|+||.||||||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av----~---------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV----D---------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhh----C---------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 48899999988876654332 1 112479999999999999999999988
Q ss_pred ----------------CCceEEeeccccC----ChHHHHHHHHh-----------cCCceEEEEeccccccccccccCCC
Q 012846 270 ----------------NFDIYDLELSAVH----SNSELRRVLLS-----------TGNRSILVVEDIDCSLELEDRQAQP 318 (455)
Q Consensus 270 ----------------~~~~~~l~~~~~~----~~~~L~~ll~~-----------~~~~sIlliDeiD~l~~~~~~~~~~ 318 (455)
..+++.+.++... ....+.+.+.. ....+|||||||+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 2456665544321 11223333321 12457999999998743
Q ss_pred ccccccCCCccchhhHhhHhhhhh-cc--------ccCCCCceEEEEecCCC-CCCCccccCCCceeeEEEeCCCC-HHH
Q 012846 319 TTVNVLKPLRPMQVTLSGLLNFLD-GL--------WSSCGDERIIVFTTNHK-DRLDPAVLRPGRMDVHIYMSYCT-PCG 387 (455)
Q Consensus 319 ~~~~~~~~~~~~~~~ls~LL~~lD-g~--------~~~~~~~~iiI~tTN~~-~~LD~aLlrpgR~d~~I~~~~p~-~~~ 387 (455)
.+++.||..|+ |. .......+++|+|+|.. ..+.++|+. ||+++|.++++. .++
T Consensus 141 -------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~ 205 (633)
T TIGR02442 141 -------------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEE 205 (633)
T ss_pred -------------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHH
Confidence 33566777775 21 11111347788888853 368899999 999999999886 467
Q ss_pred HHHHHHHHcC
Q 012846 388 FDTLAANYLG 397 (455)
Q Consensus 388 r~~l~~~~l~ 397 (455)
+.++++..+.
T Consensus 206 ~~~il~~~~~ 215 (633)
T TIGR02442 206 RVEIIRRRLA 215 (633)
T ss_pred HHHHHHHHHh
Confidence 7778776443
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.03 E-value=1.6e-09 Score=92.91 Aligned_cols=119 Identities=28% Similarity=0.403 Sum_probs=71.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCc---eEEeeccccCC--------------------hHHHHHHHHhcC--CceE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFD---IYDLELSAVHS--------------------NSELRRVLLSTG--NRSI 299 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~---~~~l~~~~~~~--------------------~~~L~~ll~~~~--~~sI 299 (455)
+..++|+||||||||++++++|..+... ++.+++..... ...+..++..+. .+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999875 77777765321 223333343333 3599
Q ss_pred EEEeccccccccccccCCCccccccCCCccchhhHhhH--hhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeE
Q 012846 300 LVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGL--LNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVH 377 (455)
Q Consensus 300 lliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~L--L~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~ 377 (455)
|+|||++.+...... ...... ........ ......+|+++|......+..+++ |++.+
T Consensus 82 iiiDei~~~~~~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~ 141 (148)
T smart00382 82 LILDEITSLLDAEQE-----------------ALLLLLEELRLLLLLK--SEKNLTVILTTNDEKDLGPALLRR-RFDRR 141 (148)
T ss_pred EEEECCcccCCHHHH-----------------HHHHhhhhhHHHHHHH--hcCCCEEEEEeCCCccCchhhhhh-ccceE
Confidence 999999987641111 000000 00000001 113467888888633333344333 88888
Q ss_pred EEeCCC
Q 012846 378 IYMSYC 383 (455)
Q Consensus 378 I~~~~p 383 (455)
+.++.+
T Consensus 142 ~~~~~~ 147 (148)
T smart00382 142 IVLLLI 147 (148)
T ss_pred EEecCC
Confidence 887654
No 173
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.02 E-value=6.3e-09 Score=94.30 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=81.3
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcC-----------------------CceEEeecccc---CChHHHHHHHHhcC-
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLN-----------------------FDIYDLELSAV---HSNSELRRVLLSTG- 295 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~-----------------------~~~~~l~~~~~---~~~~~L~~ll~~~~- 295 (455)
..+..+||+||+|+||+++|.++|+.+- .+++.++.... ..-++++.+.....
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 3467899999999999999999998651 34566665543 24577887776653
Q ss_pred -----CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccC
Q 012846 296 -----NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLR 370 (455)
Q Consensus 296 -----~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlr 370 (455)
..-|++|||+|.+.. ...+.||..|+.. ++..++|++|++++.|.|.++.
T Consensus 97 ~~~~~~~KviiI~~ad~l~~---------------------~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKLTE---------------------EAQNALLKTLEEP----PENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp S-TTSSSEEEEEETGGGS-H---------------------HHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHT
T ss_pred HHhcCCceEEEeehHhhhhH---------------------HHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHh
Confidence 356999999998743 3458899999875 3568999999999999999998
Q ss_pred CCceeeEEEeCCC
Q 012846 371 PGRMDVHIYMSYC 383 (455)
Q Consensus 371 pgR~d~~I~~~~p 383 (455)
|+ ..+.++..
T Consensus 152 --Rc-~~i~~~~l 161 (162)
T PF13177_consen 152 --RC-QVIRFRPL 161 (162)
T ss_dssp --TS-EEEEE---
T ss_pred --hc-eEEecCCC
Confidence 77 56666653
No 174
>PRK08181 transposase; Validated
Probab=99.02 E-value=1e-09 Score=107.30 Aligned_cols=65 Identities=25% Similarity=0.432 Sum_probs=49.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCC-------hHHHHHHHHhcCCceEEEEecccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHS-------NSELRRVLLSTGNRSILVVEDIDCSL 309 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~-------~~~L~~ll~~~~~~sIlliDeiD~l~ 309 (455)
+.+++|+||||||||+|+.|+|+++ |+.++.++..++.. +..+.+.+....+..+|+|||++...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence 4689999999999999999999765 66777776655432 22344556666788999999998653
No 175
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.02 E-value=3.1e-09 Score=107.08 Aligned_cols=153 Identities=17% Similarity=0.202 Sum_probs=105.4
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChH
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNS 285 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~ 285 (455)
-|++++|.....+.+++.+...... ...+||+|++||||+++|++|.... +.+++.++|..+. +.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~-~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-EN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC-HH
Confidence 3778999998888998888776533 4579999999999999999997654 4689999999875 34
Q ss_pred HHHHHHH------------------hcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-c
Q 012846 286 ELRRVLL------------------STGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-S 346 (455)
Q Consensus 286 ~L~~ll~------------------~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-~ 346 (455)
.+...++ ....++.|||||||.+.. .. ...|++.++.-. .
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~------------------~~---Q~~L~~~l~~~~~~ 130 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------LV---QEKLLRVIEYGELE 130 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH------------------HH---HHHHHHHHhcCcEE
Confidence 4444332 223568999999998754 22 344555554211 1
Q ss_pred CCC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHHc
Q 012846 347 SCG------DERIIVFTTNHK-------DRLDPAVLRPGRM-DVHIYMSYCTP--CGFDTLAANYL 396 (455)
Q Consensus 347 ~~~------~~~iiI~tTN~~-------~~LD~aLlrpgR~-d~~I~~~~p~~--~~r~~l~~~~l 396 (455)
..| -++.||+||+.. ..+.+.|.. |+ ...|.+|.... ++...|+..|+
T Consensus 131 ~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl 194 (326)
T PRK11608 131 RVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFA 194 (326)
T ss_pred eCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHH
Confidence 111 135677777653 345566766 77 56788888776 66777777776
No 176
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.01 E-value=1.5e-09 Score=101.31 Aligned_cols=188 Identities=15% Similarity=0.242 Sum_probs=111.5
Q ss_pred eeecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-C----CceEE
Q 012846 201 WITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-N----FDIYD 275 (455)
Q Consensus 201 ~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-~----~~~~~ 275 (455)
+++...|..+.+++|.++....+.- +.+. |- -..+++.||||||||+-+.++|+++ | -.+..
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~v----ia~~-------gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSV----IAKE-------GN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHH----HHHc-------CC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 5678899999999999987766533 2222 21 1369999999999999999999986 3 23556
Q ss_pred eeccccCChHHHHHH---HHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcccc
Q 012846 276 LELSAVHSNSELRRV---LLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWS 346 (455)
Q Consensus 276 l~~~~~~~~~~L~~l---l~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~ 346 (455)
++.++-..-+-++.- |.+.. +.-||++||+|.+-. ..+ ..|-..|+-+.+
T Consensus 84 LNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~------------------gAQ---QAlRRtMEiyS~ 142 (333)
T KOG0991|consen 84 LNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA------------------GAQ---QALRRTMEIYSN 142 (333)
T ss_pred ccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh------------------HHH---HHHHHHHHHHcc
Confidence 777765544444433 32221 346999999998753 111 223334444433
Q ss_pred CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcCCCCHHHHHHHHH
Q 012846 347 SCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNVRVTPADVGEQLL 426 (455)
Q Consensus 347 ~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~ 426 (455)
. .-+.+++|..+++=..+.. |+ ..+.+...+..+...-+...... +...+|+.-+..++.
T Consensus 143 t----tRFalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~-------------Ekv~yt~dgLeaiif 202 (333)
T KOG0991|consen 143 T----TRFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKA-------------EKVNYTDDGLEAIIF 202 (333)
T ss_pred c----chhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHH-------------hCCCCCcchHHHhhh
Confidence 3 2356778887777655555 55 24445555554433222222211 234455555555444
Q ss_pred -cCCCHHHHHHHHHHHH
Q 012846 427 -KNEDPEIALKGLLEFL 442 (455)
Q Consensus 427 -~~~~~~~al~~l~~~l 442 (455)
..+|...||..|+.-.
T Consensus 203 ta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTV 219 (333)
T ss_pred hccchHHHHHHHHHHHh
Confidence 3456666666666543
No 177
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.99 E-value=2.7e-09 Score=113.76 Aligned_cols=127 Identities=16% Similarity=0.221 Sum_probs=83.5
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEe----eccccCChHHHHH----------HHHhcCCceEEEEeccccccccc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDL----ELSAVHSNSELRR----------VLLSTGNRSILVVEDIDCSLELE 312 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l----~~~~~~~~~~L~~----------ll~~~~~~sIlliDeiD~l~~~~ 312 (455)
.+||+|+||||||.+++++++......|.. ++..+.. ..++. -....+.+++++|||+|.+..
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~-- 314 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD-- 314 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEccCcceEEecCccEEecCCCEEEEechhhCCH--
Confidence 599999999999999999999887655433 2211211 11111 011123578999999998743
Q ss_pred cccCCCccccccCCCccchhhHhhHhhhhhc---------cccCCCCceEEEEecCCCC-------------CCCccccC
Q 012846 313 DRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG---------LWSSCGDERIIVFTTNHKD-------------RLDPAVLR 370 (455)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg---------~~~~~~~~~iiI~tTN~~~-------------~LD~aLlr 370 (455)
...+.|+..|+. ....-.....||+|+|..+ .|++++++
T Consensus 315 -------------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs 375 (509)
T smart00350 315 -------------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS 375 (509)
T ss_pred -------------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC
Confidence 223445555532 1111123467888999653 58999999
Q ss_pred CCceeeEEEe-CCCCHHHHHHHHHHHcC
Q 012846 371 PGRMDVHIYM-SYCTPCGFDTLAANYLG 397 (455)
Q Consensus 371 pgR~d~~I~~-~~p~~~~r~~l~~~~l~ 397 (455)
|||....+ .+|+.+...+|+++.+.
T Consensus 376 --RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 376 --RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred --ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99986554 89999999999988653
No 178
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.98 E-value=2.1e-09 Score=107.17 Aligned_cols=96 Identities=23% Similarity=0.377 Sum_probs=65.8
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC--
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH-- 282 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~-- 282 (455)
++|+++...+..+..+......|+.. |.. | +.++|++||||||||||+|+.|||+++ |..+..+....+.
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~---~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEA---YPP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHH---hhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 56777765554454555555555542 111 1 245799999999999999999999988 6777777665542
Q ss_pred -----ChHHHHHHHHhcCCceEEEEeccccc
Q 012846 283 -----SNSELRRVLLSTGNRSILVVEDIDCS 308 (455)
Q Consensus 283 -----~~~~L~~ll~~~~~~sIlliDeiD~l 308 (455)
.+..+.+.+....+..+|+|||+..-
T Consensus 199 lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 199 LKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 12234556666778899999999753
No 179
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.97 E-value=5.6e-09 Score=95.14 Aligned_cols=86 Identities=24% Similarity=0.256 Sum_probs=61.2
Q ss_pred ccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHHHHH
Q 012846 213 LAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSELRR 289 (455)
Q Consensus 213 l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~L~~ 289 (455)
|+|.....+++++.+...... +..+||+|++||||+.+|++|-+.. +.||+.++|+.+. .+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~-~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALP-EELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS--HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhh-cchhhh
Confidence 466677777788877766433 4679999999999999999998865 4799999999884 344444
Q ss_pred HHHh------------------cCCceEEEEeccccccc
Q 012846 290 VLLS------------------TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 290 ll~~------------------~~~~sIlliDeiD~l~~ 310 (455)
.|+. ....++|||||||.+..
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~ 107 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPP 107 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-H
T ss_pred hhhccccccccccccccCCceeeccceEEeecchhhhHH
Confidence 4432 22568999999998864
No 180
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.97 E-value=1.6e-09 Score=100.86 Aligned_cols=46 Identities=33% Similarity=0.544 Sum_probs=35.5
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
.|++|+|++..|..+.-... | +.++||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 38899999999988754332 2 4689999999999999999999876
No 181
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.96 E-value=6.3e-09 Score=111.79 Aligned_cols=156 Identities=17% Similarity=0.239 Sum_probs=105.7
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCC
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHS 283 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~ 283 (455)
..+|+.++|.....+++++.+...... ...+||+|++||||+++|++|.... +.+++.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARS-----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 357999999999999998888766432 4579999999999999999998875 57999999998743
Q ss_pred hHHHHHHHHh------------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc-
Q 012846 284 NSELRRVLLS------------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL- 344 (455)
Q Consensus 284 ~~~L~~ll~~------------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~- 344 (455)
..+...++. ..++++|||||||.+.. . ....|+..++.-
T Consensus 261 -~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~------------------~---~Q~~Ll~~l~~~~ 318 (534)
T TIGR01817 261 -TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP------------------A---FQAKLLRVLQEGE 318 (534)
T ss_pred -HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH------------------H---HHHHHHHHHhcCc
Confidence 344443321 23568999999998754 2 235566666431
Q ss_pred ccCCCC------ceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCC--HHHHHHHHHHHcC
Q 012846 345 WSSCGD------ERIIVFTTNHK-------DRLDPAVLRPGRM-DVHIYMSYCT--PCGFDTLAANYLG 397 (455)
Q Consensus 345 ~~~~~~------~~iiI~tTN~~-------~~LD~aLlrpgR~-d~~I~~~~p~--~~~r~~l~~~~l~ 397 (455)
....|+ .+-||+||+.. ..+.+.|.. |+ ...|.+|... .++...|++.|+.
T Consensus 319 ~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~ 385 (534)
T TIGR01817 319 FERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLE 385 (534)
T ss_pred EEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHH
Confidence 111111 25567777643 123334443 45 4578888877 4777778877764
No 182
>PRK12377 putative replication protein; Provisional
Probab=98.95 E-value=4.4e-09 Score=101.62 Aligned_cols=94 Identities=19% Similarity=0.327 Sum_probs=60.2
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCC-
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHS- 283 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~- 283 (455)
.+|++.....+..+.+...+..+... |.. ...+++|+||||||||+|+.|||+.+ +..+..++..++..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~---~~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADE---LMT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHH---HHh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 46777654332233344444433322 111 13589999999999999999999987 56676666655432
Q ss_pred -------hHHHHHHHHhcCCceEEEEeccccc
Q 012846 284 -------NSELRRVLLSTGNRSILVVEDIDCS 308 (455)
Q Consensus 284 -------~~~L~~ll~~~~~~sIlliDeiD~l 308 (455)
......++.......+|+|||+...
T Consensus 144 l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 144 LHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1123355666678899999999754
No 183
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=7.5e-08 Score=96.25 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=93.2
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcC-----------------------CceEEeeccc---cCChHHHHHHHHhcC--
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLN-----------------------FDIYDLELSA---VHSNSELRRVLLSTG-- 295 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~-----------------------~~~~~l~~~~---~~~~~~L~~ll~~~~-- 295 (455)
.+.++||+||.|+||+++|.++|..+- -+++.+.... ...-++++.+.....
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 467899999999999999999998762 2455555432 224466676544332
Q ss_pred ----CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCC
Q 012846 296 ----NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRP 371 (455)
Q Consensus 296 ----~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrp 371 (455)
..-|++||++|.+.. ..-+.||..++.- +++.++|++|++++.|.|.+++
T Consensus 104 ~~~~~~kV~iI~~ae~m~~---------------------~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTI~S- 157 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMNE---------------------SASNALLKTLEEP----APNCLFLLVTHNQKRLLPTIVS- 157 (319)
T ss_pred cccCCceEEEecchhhhCH---------------------HHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh-
Confidence 346999999998742 3358899988763 4568999999999999999998
Q ss_pred CceeeEEEeCCCCHHHHHHHHHH
Q 012846 372 GRMDVHIYMSYCTPCGFDTLAAN 394 (455)
Q Consensus 372 gR~d~~I~~~~p~~~~r~~l~~~ 394 (455)
|+ ..+.|+.|+.++..+.+..
T Consensus 158 -RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 158 -RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -cc-eeEeCCCCCHHHHHHHHHH
Confidence 88 5889999999888776654
No 184
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.92 E-value=9.5e-09 Score=112.73 Aligned_cols=154 Identities=19% Similarity=0.173 Sum_probs=101.1
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCCh
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSN 284 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~ 284 (455)
.+|++++|.....+.+++.+...... ...+||+|++||||+++|++|.+.. +.+++.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~- 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD- 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh-
Confidence 36899999888888888877766433 3569999999999999999998865 47999999999854
Q ss_pred HHHH-HHHH--------------hcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc-ccCC
Q 012846 285 SELR-RVLL--------------STGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL-WSSC 348 (455)
Q Consensus 285 ~~L~-~ll~--------------~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~-~~~~ 348 (455)
+.+. .+|- ....+++|||||||.+.. .. ...|+..++.- ....
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~------------------~~---Q~~Ll~~l~~~~~~~~ 448 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP------------------EL---QSALLQVLKTGVITRL 448 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH------------------HH---HHHHHHHHhcCcEEeC
Confidence 3333 2332 123568999999998754 22 24455555421 1111
Q ss_pred CC------ceEEEEecCCCCCCCccccCCCce---------eeEEEeCCCCH--HHHHHHHHHHcC
Q 012846 349 GD------ERIIVFTTNHKDRLDPAVLRPGRM---------DVHIYMSYCTP--CGFDTLAANYLG 397 (455)
Q Consensus 349 ~~------~~iiI~tTN~~~~LD~aLlrpgR~---------d~~I~~~~p~~--~~r~~l~~~~l~ 397 (455)
|. .+-||+|||..- ..+...|+| ...|.+|.... +++..|+..|+.
T Consensus 449 ~~~~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~ 511 (638)
T PRK11388 449 DSRRLIPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLR 511 (638)
T ss_pred CCCceEEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHH
Confidence 11 355777777531 122223344 56677777765 566677777764
No 185
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=6.7e-08 Score=96.86 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=92.7
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCC------------------------ceEEeecc--ccCChHHHHHHHHhcC--
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNF------------------------DIYDLELS--AVHSNSELRRVLLSTG-- 295 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~------------------------~~~~l~~~--~~~~~~~L~~ll~~~~-- 295 (455)
.+.++||+||+|+||+++|.++|+.+-. +++.+... ....-+++|++.....
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 3568999999999999999999987732 24444331 1123467777654432
Q ss_pred ----CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCC
Q 012846 296 ----NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRP 371 (455)
Q Consensus 296 ----~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrp 371 (455)
..-|++||++|.+-. ...+.||..|+.- ++..++|++|++++.|.|.+++
T Consensus 103 ~~~g~~KV~iI~~a~~m~~---------------------~AaNaLLKtLEEP----p~~~~fiL~t~~~~~llpTI~S- 156 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTE---------------------AAANALLKTLEEP----RPNTYFLLQADLSAALLPTIYS- 156 (325)
T ss_pred cccCCceEEEEechhhhCH---------------------HHHHHHHHHhcCC----CCCeEEEEEECChHhCchHHHh-
Confidence 346999999998742 3358889888763 4668999999999999999998
Q ss_pred CceeeEEEeCCCCHHHHHHHHHHH
Q 012846 372 GRMDVHIYMSYCTPCGFDTLAANY 395 (455)
Q Consensus 372 gR~d~~I~~~~p~~~~r~~l~~~~ 395 (455)
|+ ..+.|+.|+.++..+.+...
T Consensus 157 -RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 157 -RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -hc-eEEeCCCCCHHHHHHHHHHH
Confidence 87 68899999998887666653
No 186
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.90 E-value=7.9e-09 Score=104.19 Aligned_cols=150 Identities=19% Similarity=0.192 Sum_probs=98.1
Q ss_pred ccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHHHHH
Q 012846 213 LAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSELRR 289 (455)
Q Consensus 213 l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~L~~ 289 (455)
++|.....+.+.+.+...... ...+||+|++||||+++|++|.... +.+++.++|+.+. +..+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~-----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~-~~~l~~ 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL-----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS-ENLLDS 68 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC-hHHHHH
Confidence 355566666777777655432 4579999999999999999997655 4799999999874 333433
Q ss_pred HHH------------------hcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-cCC--
Q 012846 290 VLL------------------STGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-SSC-- 348 (455)
Q Consensus 290 ll~------------------~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-~~~-- 348 (455)
.++ ....+++|||||||.+.. .. ...|+..|+.-. ...
T Consensus 69 ~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~------------------~~---Q~~Ll~~l~~~~~~~~g~ 127 (329)
T TIGR02974 69 ELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL------------------LV---QEKLLRVIEYGEFERVGG 127 (329)
T ss_pred HHhccccccccCcccccCCchhhCCCCEEEeCChHhCCH------------------HH---HHHHHHHHHcCcEEecCC
Confidence 332 223578999999998754 22 344555554211 110
Q ss_pred ----CCceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCC--HHHHHHHHHHHcC
Q 012846 349 ----GDERIIVFTTNHK-------DRLDPAVLRPGRM-DVHIYMSYCT--PCGFDTLAANYLG 397 (455)
Q Consensus 349 ----~~~~iiI~tTN~~-------~~LD~aLlrpgR~-d~~I~~~~p~--~~~r~~l~~~~l~ 397 (455)
...+-||++||.. ..+.+.|.. |+ ...|.+|... .++...|++.|+.
T Consensus 128 ~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 128 SQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred CceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 1235677777643 234566666 77 4578888887 3777778877764
No 187
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.90 E-value=1.6e-08 Score=107.77 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=103.0
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHH-----------cCCceEEe
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY-----------LNFDIYDL 276 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~-----------l~~~~~~l 276 (455)
.+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|-+. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46999999998888888888766433 457999999999999999999876 46799999
Q ss_pred eccccCChHHHHHHHHh-------------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhH
Q 012846 277 ELSAVHSNSELRRVLLS-------------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGL 337 (455)
Q Consensus 277 ~~~~~~~~~~L~~ll~~-------------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 337 (455)
+|+.+.. ..+...|+. ...++.||||||+.+.. . ....|
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~------------------~---~Q~kL 342 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL------------------P---LQTRL 342 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCH------------------H---HHHHH
Confidence 9998853 334433322 23567999999998754 1 23455
Q ss_pred hhhhhccc-cCCC------CceEEEEecCCC-CC------CCccccCCCce-eeEEEeCCCCH--HHHHHHHHHHcCC
Q 012846 338 LNFLDGLW-SSCG------DERIIVFTTNHK-DR------LDPAVLRPGRM-DVHIYMSYCTP--CGFDTLAANYLGI 398 (455)
Q Consensus 338 L~~lDg~~-~~~~------~~~iiI~tTN~~-~~------LD~aLlrpgR~-d~~I~~~~p~~--~~r~~l~~~~l~~ 398 (455)
+..|+.-. ...| -.+-||++||.. +. +.+.|.- |+ ...|++|+... ++...|++.|+..
T Consensus 343 l~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 343 LRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQ 418 (538)
T ss_pred HhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHH
Confidence 65554211 1111 123567777643 11 2222322 33 35677777765 6677888888754
No 188
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.89 E-value=2e-08 Score=102.57 Aligned_cols=177 Identities=14% Similarity=0.186 Sum_probs=106.7
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC-----CceEEee
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN-----FDIYDLE 277 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~-----~~~~~l~ 277 (455)
...+..+|++++..+.-.... .........+ |. ....++||||+|.|||+|.+|++++.. ..++.++
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~-aa~~~va~~~------g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAY-AAAKAVAENP------GG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred cCCCCCchhheeeCCchHHHH-HHHHHHHhcc------CC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 345556899987655433222 2222222221 22 234699999999999999999998773 2345554
Q ss_pred ccccCC-------hHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCC
Q 012846 278 LSAVHS-------NSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGD 350 (455)
Q Consensus 278 ~~~~~~-------~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~ 350 (455)
...... +..+.++=... +-.+++||||+.+.. ...+..+|.+.+..+... +
T Consensus 151 se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~g-------------------k~~~qeefFh~FN~l~~~--~ 208 (408)
T COG0593 151 SEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAG-------------------KERTQEEFFHTFNALLEN--G 208 (408)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcC-------------------ChhHHHHHHHHHHHHHhc--C
Confidence 433321 01111111122 456999999998864 112234555555555443 2
Q ss_pred ceEEEEecCCCCCC---CccccCCCce--eeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHh
Q 012846 351 ERIIVFTTNHKDRL---DPAVLRPGRM--DVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIM 411 (455)
Q Consensus 351 ~~iiI~tTN~~~~L---D~aLlrpgR~--d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~ 411 (455)
+.||+.+-..|..+ +|.|.+ || ...+.+..|+.+.+..+++......+..+.+++...+
T Consensus 209 kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~l 272 (408)
T COG0593 209 KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFL 272 (408)
T ss_pred CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 25555544455554 578887 77 5788999999999999999876666666655554443
No 189
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.88 E-value=9.3e-08 Score=94.45 Aligned_cols=65 Identities=29% Similarity=0.401 Sum_probs=47.7
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC--CceEEeeccccC
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN--FDIYDLELSAVH 282 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~--~~~~~l~~~~~~ 282 (455)
=+-++|+.+.++..-=.++ .++ -|+-.++|+|+.||||||||.||-+||.+|| .||..++.+++.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~-mik-------~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiY 104 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVK-MIK-------QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY 104 (450)
T ss_pred CCcccchHHHHHhhhHHHH-HHH-------hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceee
Confidence 3668888877765322221 222 2556689999999999999999999999996 677777777664
No 190
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.88 E-value=4.1e-08 Score=98.22 Aligned_cols=65 Identities=28% Similarity=0.396 Sum_probs=44.6
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC--CceEEeeccccC
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN--FDIYDLELSAVH 282 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~--~~~~~l~~~~~~ 282 (455)
.+-++|+.+.++..--.++ .++. |+--+|++||.||||||||.||-+||++|| .||..++.+++.
T Consensus 23 ~~GlVGQ~~AReAagiiv~-mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVD-MIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp ETTEES-HHHHHHHHHHHH-HHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cccccChHHHHHHHHHHHH-HHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 5789999988887644333 2222 444578999999999999999999999997 677777666653
No 191
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.5e-08 Score=104.11 Aligned_cols=136 Identities=24% Similarity=0.312 Sum_probs=94.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee-ccccC--Ch----HHHHHHHHhcC--CceEEEEecccccccccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE-LSAVH--SN----SELRRVLLSTG--NRSILVVEDIDCSLELEDRQ 315 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~-~~~~~--~~----~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~ 315 (455)
-..+||+||||+|||+||+.+|...++|++.+- ..++. ++ ..+++.|..+- .-+||++|||+.+++-..-+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG 617 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG 617 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC
Confidence 357999999999999999999999999999763 33332 22 45778887763 45999999999998522111
Q ss_pred CCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCc-cccCCCceeeEEEeCCCCH-HHHHHHHH
Q 012846 316 AQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDP-AVLRPGRMDVHIYMSYCTP-CGFDTLAA 393 (455)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~-aLlrpgR~d~~I~~~~p~~-~~r~~l~~ 393 (455)
. +.++.++..|+-.+... ...|...+|++||...+-|.. .++. .|+..|++|..+. ++...++.
T Consensus 618 P-----------RfSN~vlQaL~VllK~~-ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 618 P-----------RFSNLVLQALLVLLKKQ-PPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred c-----------hhhHHHHHHHHHHhccC-CCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 1 14566677777776654 223445666667776655532 4556 7899999999887 55555555
Q ss_pred H
Q 012846 394 N 394 (455)
Q Consensus 394 ~ 394 (455)
.
T Consensus 684 ~ 684 (744)
T KOG0741|consen 684 E 684 (744)
T ss_pred H
Confidence 3
No 192
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.88 E-value=9.3e-09 Score=111.21 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=88.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCC--ceEEeeccccC----ChHHHHHHHH-----------hcCCceEEEEeccccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNF--DIYDLELSAVH----SNSELRRVLL-----------STGNRSILVVEDIDCS 308 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~--~~~~l~~~~~~----~~~~L~~ll~-----------~~~~~sIlliDeiD~l 308 (455)
.++||.|+||||||++++++++.+.. ++..+.+.... ..-.+...+. ...++++|+||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998865 57777652211 1112222111 1235679999999987
Q ss_pred cccccccCCCccccccCCCccchhhHhhHhhhhhc---------cccCCCCceEEEEecCCCC---CCCccccCCCceee
Q 012846 309 LELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG---------LWSSCGDERIIVFTTNHKD---RLDPAVLRPGRMDV 376 (455)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg---------~~~~~~~~~iiI~tTN~~~---~LD~aLlrpgR~d~ 376 (455)
.+ .+.+.|+..|+. ..........||+|+|..+ .|+++|+. ||++
T Consensus 97 ~~---------------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l 153 (589)
T TIGR02031 97 DD---------------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLAL 153 (589)
T ss_pred CH---------------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccC
Confidence 53 345677777752 1111123467888888765 78999999 9999
Q ss_pred EEEeCCC-CHHHHHHHHHHHc
Q 012846 377 HIYMSYC-TPCGFDTLAANYL 396 (455)
Q Consensus 377 ~I~~~~p-~~~~r~~l~~~~l 396 (455)
+|.+.++ +.++|.+|++.++
T Consensus 154 ~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 154 HVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred eeecCCCCCHHHHHHHHHHHH
Confidence 9998765 4566889998876
No 193
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=6.8e-08 Score=97.47 Aligned_cols=123 Identities=19% Similarity=0.191 Sum_probs=93.0
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCC------------------------ceEEeeccc---cCChHHHHHHHHhcC-
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNF------------------------DIYDLELSA---VHSNSELRRVLLSTG- 295 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~------------------------~~~~l~~~~---~~~~~~L~~ll~~~~- 295 (455)
.+.++||+||+|+||+++|.++|..+-. +++.+.... ...-+++|++.....
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 4678999999999999999999987722 344443321 124466777665442
Q ss_pred -----CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccC
Q 012846 296 -----NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLR 370 (455)
Q Consensus 296 -----~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlr 370 (455)
..-|++||++|.+-. ..-+.||..|+.- ++..++|++|++++.|.|.+++
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~---------------------~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTD---------------------AAANALLKTLEEP----PENTWFFLACREPARLLATLRS 157 (334)
T ss_pred ccccCCceEEEEcchHhhCH---------------------HHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh
Confidence 456999999998743 3358899888763 5678999999999999999998
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHH
Q 012846 371 PGRMDVHIYMSYCTPCGFDTLAAN 394 (455)
Q Consensus 371 pgR~d~~I~~~~p~~~~r~~l~~~ 394 (455)
|+. .+.|+.|+.++....+..
T Consensus 158 --RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 158 --RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred --ccc-cccCCCCCHHHHHHHHHH
Confidence 885 689999999887776653
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.7e-09 Score=100.24 Aligned_cols=94 Identities=23% Similarity=0.383 Sum_probs=66.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC--------hHHHHHHHHhc------CCceEEEEeccccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS--------NSELRRVLLST------GNRSILVVEDIDCSLE 310 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~--------~~~L~~ll~~~------~~~sIlliDeiD~l~~ 310 (455)
+.++||.||.|+|||.||+.+|+.++.||..-+.+.+.. +.-|.+++..+ ++++||+|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 467999999999999999999999999999998888742 23355666554 3689999999999865
Q ss_pred cccccCCCccccccCCCccchhhHhhHhhhhhccc
Q 012846 311 LEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW 345 (455)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~ 345 (455)
+.. ..+-..+. ...-....||..|+|..
T Consensus 177 kSe--N~SITRDV-----SGEGVQQALLKiiEGTv 204 (408)
T COG1219 177 KSE--NPSITRDV-----SGEGVQQALLKIIEGTV 204 (408)
T ss_pred cCC--CCCccccc-----CchHHHHHHHHHHcCce
Confidence 321 11111111 11233466888888764
No 195
>PRK04132 replication factor C small subunit; Provisional
Probab=98.88 E-value=2.5e-08 Score=110.55 Aligned_cols=124 Identities=10% Similarity=0.103 Sum_probs=98.0
Q ss_pred EEeC--CCCCChHHHHHHHHHHc-----CCceEEeeccccCChHHHHHHHHhcC--------CceEEEEecccccccccc
Q 012846 249 LLYG--PPGTGKSSLIAAMSNYL-----NFDIYDLELSAVHSNSELRRVLLSTG--------NRSILVVEDIDCSLELED 313 (455)
Q Consensus 249 LL~G--ppGTGKT~la~aiA~~l-----~~~~~~l~~~~~~~~~~L~~ll~~~~--------~~sIlliDeiD~l~~~~~ 313 (455)
+..| |++.||||+|.|+|+++ +.+++.++.++..+-+.+++++.... ..-|++|||+|.+..
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~--- 644 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--- 644 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH---
Confidence 5668 99999999999999998 56899999998766778887765421 236999999998742
Q ss_pred ccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 012846 314 RQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAA 393 (455)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~ 393 (455)
...+.|+..|+.. .+...+|++||++..+.+++.+ |+ ..+.|+.|+.++....++
T Consensus 645 ------------------~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 645 ------------------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ------------------HHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHH
Confidence 2246788888764 2457899999999999999998 87 689999999988887777
Q ss_pred HHcCCCC
Q 012846 394 NYLGITD 400 (455)
Q Consensus 394 ~~l~~~~ 400 (455)
..+..++
T Consensus 700 ~I~~~Eg 706 (846)
T PRK04132 700 YIAENEG 706 (846)
T ss_pred HHHHhcC
Confidence 6655443
No 196
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=1.9e-07 Score=93.36 Aligned_cols=148 Identities=16% Similarity=0.205 Sum_probs=99.5
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCC---------------------ceEEee--cccc-------CChHHHHHHHHh
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNF---------------------DIYDLE--LSAV-------HSNSELRRVLLS 293 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~---------------------~~~~l~--~~~~-------~~~~~L~~ll~~ 293 (455)
.+.++||+||+|+||+++|.++|+.+-. +++.++ ...- ..-+.++++...
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 4668999999999999999999976621 244442 2111 123456666544
Q ss_pred cC------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCcc
Q 012846 294 TG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPA 367 (455)
Q Consensus 294 ~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~a 367 (455)
.. ..-|++||++|.+.. ...+.||..|+.. +++.++|++|++++.|.|.
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~~---------------------~AaNaLLKtLEEP----p~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAINR---------------------AACNALLKTLEEP----SPGRYLWLISAQPARLPAT 159 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhCH---------------------HHHHHHHHHhhCC----CCCCeEEEEECChhhCchH
Confidence 32 346999999998742 2357889888764 4568899999999999999
Q ss_pred ccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcCCCCHHHHHHH
Q 012846 368 VLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNVRVTPADVGEQ 424 (455)
Q Consensus 368 LlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~~ 424 (455)
+++ |+ ..+.|+.|+.++....+... +.. ..++..++.-.+.+|....+.
T Consensus 160 IrS--RC-q~i~~~~~~~~~~~~~L~~~-~~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 160 IRS--RC-QRLEFKLPPAHEALAWLLAQ-GVS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHh--hh-eEeeCCCcCHHHHHHHHHHc-CCC----hHHHHHHHHHcCCCHHHHHHH
Confidence 998 88 58899999998877666542 111 122334444444556544443
No 197
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.87 E-value=9e-09 Score=104.86 Aligned_cols=207 Identities=13% Similarity=0.106 Sum_probs=128.6
Q ss_pred HHHhhhHHHHHhhhHHHhcCceeEEEecccccccccC-CCceeee--ecCCCCCcccccccHHHHHHHHHHHHHHHhchh
Q 012846 159 VLNSYFPYILRKSKSAQEENKTLKLYSLNQDHARRFG-LDSWHWI--TFNHPATFDTLAMEAELKKMIIEDLERFVKRKD 235 (455)
Q Consensus 159 vl~~yl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~ 235 (455)
....++..+...++..+...+++.......-...... ...-... ..-....+++|+|....-+++++.++.+.
T Consensus 23 ~vs~~l~~l~~~~~~~~~~~~pv~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LIG~~~~~~~~~eqik~~a---- 98 (403)
T COG1221 23 NVSHELNGLGREGDLAKINGRPVIFLPSEAFSMSELTELQALLPQARPYLKSEALDDLIGESPSLQELREQIKAYA---- 98 (403)
T ss_pred HhHHHHHhhhhhhhHHHhcCCCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhhhhccCHHHHHHHHHHHhhC----
Confidence 4456666777777777777776633221100000000 0000000 11223468999999999999999887632
Q ss_pred HHhhhCCCCCceeEEeCCCCCChHHHHHHHHHH----cCCceEEeeccccCChHHHHHHHHh-----------------c
Q 012846 236 YYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY----LNFDIYDLELSAVHSNSELRRVLLS-----------------T 294 (455)
Q Consensus 236 ~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~----l~~~~~~l~~~~~~~~~~L~~ll~~-----------------~ 294 (455)
+....+|++|++||||+.+|++|... .+.|++.+||+.+..+.....+|-- .
T Consensus 99 -------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~ 171 (403)
T COG1221 99 -------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQ 171 (403)
T ss_pred -------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchhee
Confidence 33467999999999999999999632 4679999999999887776665521 1
Q ss_pred CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhc-ccc------CCCCceEEEEecCC-C-CCCC
Q 012846 295 GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG-LWS------SCGDERIIVFTTNH-K-DRLD 365 (455)
Q Consensus 295 ~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg-~~~------~~~~~~iiI~tTN~-~-~~LD 365 (455)
...++||+|||..+.. .. ...||..||. .+. .....+.+|++||. + +.+-
T Consensus 172 A~GGtLfLDEI~~LP~------------------~~---Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~ 230 (403)
T COG1221 172 ANGGTLFLDEIHRLPP------------------EG---QEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVL 230 (403)
T ss_pred cCCCEEehhhhhhCCH------------------hH---HHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHH
Confidence 2568999999998864 22 2456666763 111 11234666776662 2 2222
Q ss_pred c--cccCCCceeeEEEeCCCCH--HHHHHHHHHHcCC
Q 012846 366 P--AVLRPGRMDVHIYMSYCTP--CGFDTLAANYLGI 398 (455)
Q Consensus 366 ~--aLlrpgR~d~~I~~~~p~~--~~r~~l~~~~l~~ 398 (455)
. .|.+ -|+...|.+|.... +++..|+..|+..
T Consensus 231 ~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 231 AGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred hhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHH
Confidence 2 3432 16778888888876 6677788877754
No 198
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.86 E-value=4.8e-08 Score=103.71 Aligned_cols=67 Identities=28% Similarity=0.452 Sum_probs=55.2
Q ss_pred eecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 202 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
++...|.+.++|+..+...++|...++..+. +....+-+||+||||||||++++++|++++..+..-
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 4678899999999999888888888775432 334456788999999999999999999999888754
No 199
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.84 E-value=6.1e-08 Score=103.68 Aligned_cols=157 Identities=15% Similarity=0.252 Sum_probs=101.1
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~ 282 (455)
...+|++++|.....+++++.+...... ...+||+|++||||+++|+++.... +.+++.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 3457999999988888888877655332 3469999999999999999986554 4689999999875
Q ss_pred ChHHHHHHHHh------------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhc-
Q 012846 283 SNSELRRVLLS------------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG- 343 (455)
Q Consensus 283 ~~~~L~~ll~~------------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg- 343 (455)
. ..+...++. ...++.|||||||.+.. ..+ ..|++++..
T Consensus 268 ~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~------------------~~Q---~~Ll~~l~~~ 325 (520)
T PRK10820 268 D-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP------------------RMQ---AKLLRFLNDG 325 (520)
T ss_pred H-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH------------------HHH---HHHHHHHhcC
Confidence 3 333333221 23568899999998854 223 445555532
Q ss_pred cccCCCC------ceEEEEecCCC-C------CCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHHcC
Q 012846 344 LWSSCGD------ERIIVFTTNHK-D------RLDPAVLRPGRM-DVHIYMSYCTP--CGFDTLAANYLG 397 (455)
Q Consensus 344 ~~~~~~~------~~iiI~tTN~~-~------~LD~aLlrpgR~-d~~I~~~~p~~--~~r~~l~~~~l~ 397 (455)
.....|+ .+-||+||+.+ . .+.+.|.. |+ ...|.+|+... +++..|+..|+.
T Consensus 326 ~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 326 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred CcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHH
Confidence 2111111 24566666643 2 23444554 65 35677777766 456666666653
No 200
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=9.4e-09 Score=103.50 Aligned_cols=131 Identities=20% Similarity=0.301 Sum_probs=88.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC--------hHHHHHHHHhcC------CceEEEEeccccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS--------NSELRRVLLSTG------NRSILVVEDIDCSLE 310 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~--------~~~L~~ll~~~~------~~sIlliDeiD~l~~ 310 (455)
+.++||.||+|+|||+|++.||+.++.||...||+.+.. ++-|.+++..+. +..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 468999999999999999999999999999999998852 355677776653 789999999999874
Q ss_pred cccccCCCccccccCCCccchhhHhhHhhhhhcccc---------CCCCceEEEEe-------cCCCCCCCccccCCCce
Q 012846 311 LEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWS---------SCGDERIIVFT-------TNHKDRLDPAVLRPGRM 374 (455)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~---------~~~~~~iiI~t-------TN~~~~LD~aLlrpgR~ 374 (455)
.... .....+. ...-....||..++|..- ...++.+.|=| .-.-..||.-+.| |+
T Consensus 306 ~~~~--i~~~RDV-----sGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~ 376 (564)
T KOG0745|consen 306 KAES--IHTSRDV-----SGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RL 376 (564)
T ss_pred cCcc--ccccccc-----cchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hh
Confidence 2211 1111111 112334667888876421 11123333333 3345678888877 77
Q ss_pred -eeEEEeCCCC
Q 012846 375 -DVHIYMSYCT 384 (455)
Q Consensus 375 -d~~I~~~~p~ 384 (455)
|..+-|+.|+
T Consensus 377 ~d~slGFg~~s 387 (564)
T KOG0745|consen 377 DDKSLGFGAPS 387 (564)
T ss_pred cchhcccCCCC
Confidence 5667787773
No 201
>PRK06526 transposase; Provisional
Probab=98.79 E-value=6.8e-09 Score=100.81 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=46.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC-------ChHHHHHHHHhcCCceEEEEecccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH-------SNSELRRVLLSTGNRSILVVEDIDCSL 309 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~-------~~~~L~~ll~~~~~~sIlliDeiD~l~ 309 (455)
+.+++|+||||||||+|+.+|+..+ |..++.++..++. ....+.+.+.......+|+|||++...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 4689999999999999999998875 5566555544332 112334445555677899999998653
No 202
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.79 E-value=3.5e-08 Score=105.17 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=104.3
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCC
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHS 283 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~ 283 (455)
..+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|.+.. +.|++.++|..+..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 357999999999888888888766433 4579999999999999999998654 57999999998853
Q ss_pred hHHHHHHHHh-------------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc
Q 012846 284 NSELRRVLLS-------------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL 344 (455)
Q Consensus 284 ~~~L~~ll~~-------------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~ 344 (455)
..+...++. ...++.|||||||.+.. .. ...|+..|+.-
T Consensus 277 -~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~------------------~~---Q~~Ll~~L~~~ 334 (526)
T TIGR02329 277 -SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL------------------PL---QTRLLRVLEER 334 (526)
T ss_pred -hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH------------------HH---HHHHHHHHhcC
Confidence 334433322 23567999999998754 22 24455555321
Q ss_pred c-cCCC------CceEEEEecCCC-C-CCC-----ccccCCCce-eeEEEeCCCCH--HHHHHHHHHHcCC
Q 012846 345 W-SSCG------DERIIVFTTNHK-D-RLD-----PAVLRPGRM-DVHIYMSYCTP--CGFDTLAANYLGI 398 (455)
Q Consensus 345 ~-~~~~------~~~iiI~tTN~~-~-~LD-----~aLlrpgR~-d~~I~~~~p~~--~~r~~l~~~~l~~ 398 (455)
. ...| -.+-||++||.. . .+. +.|.. |+ ...|++|+... ++...|+..|+..
T Consensus 335 ~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 335 EVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred cEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 1 0101 123467777653 1 222 23333 45 36788888876 6777788777753
No 203
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.2e-08 Score=106.88 Aligned_cols=152 Identities=20% Similarity=0.281 Sum_probs=106.8
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceEEeec
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYDLEL 278 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~l~~ 278 (455)
.+|-++|.++.++++++.|.+. .+.+-+|.|+||+|||.++..+|... +..++.+++
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 4788999998888888877532 25577899999999999999999765 677899998
Q ss_pred cccCC--------hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCC
Q 012846 279 SAVHS--------NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSC 348 (455)
Q Consensus 279 ~~~~~--------~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~ 348 (455)
+.+.. ++.|+.++.... .+.|||||||+.+.+.....+. ..+ .+.+|.- ... .
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~D-----------AaNiLKP---aLA-R 297 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMD-----------AANLLKP---ALA-R 297 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccc-----------hhhhhHH---HHh-c
Confidence 88753 467777776654 4899999999999864333221 110 1222221 111 1
Q ss_pred CCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 012846 349 GDERIIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAAN 394 (455)
Q Consensus 349 ~~~~iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~ 394 (455)
++.-+|++|..-+ .=|+||-| || ..|.+..|+.++-..|++-
T Consensus 298 -GeL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 298 -GELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred -CCeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHH
Confidence 3455666554221 23899999 99 4899999999998887774
No 204
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.77 E-value=1.3e-08 Score=89.65 Aligned_cols=79 Identities=24% Similarity=0.330 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC---ceEEeeccccCChHHHHHHH
Q 012846 215 MEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF---DIYDLELSAVHSNSELRRVL 291 (455)
Q Consensus 215 g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~---~~~~l~~~~~~~~~~L~~ll 291 (455)
|.....+++.+.+...... ...+||+|+|||||+++|++|....+. +++.++|.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~~-----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS-----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS-----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 4455566777777666433 467999999999999999999987754 55566666543 3344
Q ss_pred HhcCCceEEEEeccccccc
Q 012846 292 LSTGNRSILVVEDIDCSLE 310 (455)
Q Consensus 292 ~~~~~~sIlliDeiD~l~~ 310 (455)
.. ..++.|+|+|||.+..
T Consensus 66 ~~-a~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 66 EQ-AKGGTLYLKNIDRLSP 83 (138)
T ss_dssp HH-CTTSEEEEECGCCS-H
T ss_pred HH-cCCCEEEECChHHCCH
Confidence 44 4888999999998864
No 205
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.76 E-value=6.3e-09 Score=95.76 Aligned_cols=94 Identities=22% Similarity=0.407 Sum_probs=59.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC-------ChHHHHHHHHhcCCceEEEEeccccccccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH-------SNSELRRVLLSTGNRSILVVEDIDCSLELEDR 314 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~-------~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~ 314 (455)
+.|++|+||||||||+||.||++++ +..+..++..++. .+....+.+....+..+|+|||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~----- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEP----- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS------
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceee-----
Confidence 5789999999999999999999865 7778877766653 223344555666678899999996432
Q ss_pred cCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCC
Q 012846 315 QAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 361 (455)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~ 361 (455)
........|.+.+|.-... .-+|+|||..
T Consensus 122 --------------~~~~~~~~l~~ii~~R~~~----~~tIiTSN~~ 150 (178)
T PF01695_consen 122 --------------LSEWEAELLFEIIDERYER----KPTIITSNLS 150 (178)
T ss_dssp ----------------HHHHHCTHHHHHHHHHT-----EEEEEESS-
T ss_pred --------------ecccccccchhhhhHhhcc----cCeEeeCCCc
Confidence 1112234455566554332 3467799964
No 206
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.74 E-value=4.2e-08 Score=98.66 Aligned_cols=94 Identities=21% Similarity=0.321 Sum_probs=61.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCC---------hHHHHHHHHhcCCceEEEEecccccccccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHS---------NSELRRVLLSTGNRSILVVEDIDCSLELED 313 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~---------~~~L~~ll~~~~~~sIlliDeiD~l~~~~~ 313 (455)
.+++||||||||||+|+.|||+++ +..++.++..++.. .......+.......+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~--- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKI--- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCC---
Confidence 689999999999999999999987 67777777655431 111222244455678999999975421
Q ss_pred ccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCC
Q 012846 314 RQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 361 (455)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~ 361 (455)
.....+.|.+.++..... +.-+|+|||.+
T Consensus 261 ----------------t~~~~~~Lf~iin~R~~~---~k~tIiTSNl~ 289 (329)
T PRK06835 261 ----------------TEFSKSELFNLINKRLLR---QKKMIISTNLS 289 (329)
T ss_pred ----------------CHHHHHHHHHHHHHHHHC---CCCEEEECCCC
Confidence 122335566666654332 23477788854
No 207
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.74 E-value=9.6e-08 Score=105.64 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=100.3
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCCh
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSN 284 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~ 284 (455)
.+|++++|.....+.+.+.+...... ...+||+|++|||||++|++|.... +.+++.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~- 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA- 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-
Confidence 46899999999999998888766432 3579999999999999999998754 57999999998742
Q ss_pred HHHHHHH------------------HhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-
Q 012846 285 SELRRVL------------------LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW- 345 (455)
Q Consensus 285 ~~L~~ll------------------~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~- 345 (455)
..+...+ .....+++|||||||.+.. . ....|+..|+.-.
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~------------------~---~Q~~L~~~l~~~~~ 499 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL------------------E---LQPKLLRVLQEQEF 499 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCH------------------H---HHHHHHHHHHhCCE
Confidence 2222211 1234578999999998753 1 2345555554311
Q ss_pred cCCC------CceEEEEecCCC-C------CCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHHcC
Q 012846 346 SSCG------DERIIVFTTNHK-D------RLDPAVLRPGRM-DVHIYMSYCTP--CGFDTLAANYLG 397 (455)
Q Consensus 346 ~~~~------~~~iiI~tTN~~-~------~LD~aLlrpgR~-d~~I~~~~p~~--~~r~~l~~~~l~ 397 (455)
...| .++-||+||+.. . .+.+.|.. |+ ...|.+|+... +++..|++.|+.
T Consensus 500 ~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~ 565 (686)
T PRK15429 500 ERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTF 565 (686)
T ss_pred EeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHH
Confidence 1101 134577777653 1 12222332 44 34577777655 556667777664
No 208
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=5.8e-08 Score=97.62 Aligned_cols=122 Identities=12% Similarity=0.175 Sum_probs=88.8
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcC-------------------------CceEEeeccc----------cCChHHHH
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLN-------------------------FDIYDLELSA----------VHSNSELR 288 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~-------------------------~~~~~l~~~~----------~~~~~~L~ 288 (455)
.+.++||+||+|+|||++|.++|+.+. -+++.++... ...-+.+|
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 467899999999999999999998763 3455665421 11345677
Q ss_pred HHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCC
Q 012846 289 RVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKD 362 (455)
Q Consensus 289 ~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~ 362 (455)
++..... ..-|++||++|.+-. ...+.|+..|+... .+..+|++|++++
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------------~a~naLLk~LEep~----~~~~~Ilvth~~~ 154 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNL---------------------QAANSLLKVLEEPP----PQVVFLLVSHAAD 154 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCH---------------------HHHHHHHHHHHhCc----CCCEEEEEeCChH
Confidence 7665442 346889999998743 23466777777652 3366788999999
Q ss_pred CCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 012846 363 RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAA 393 (455)
Q Consensus 363 ~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~ 393 (455)
.+.|.+.+ |+ .++.|+.|+.++....+.
T Consensus 155 ~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 155 KVLPTIKS--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred hChHHHHH--Hh-hhhcCCCCCHHHHHHHHH
Confidence 99999887 77 688899999988766554
No 209
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.72 E-value=5.6e-08 Score=95.39 Aligned_cols=134 Identities=26% Similarity=0.434 Sum_probs=79.2
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCce---EEeeccccCChHHHHHHHHhc-------------CCceEEEEeccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDI---YDLELSAVHSNSELRRVLLST-------------GNRSILVVEDIDCS 308 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~---~~l~~~~~~~~~~L~~ll~~~-------------~~~sIlliDeiD~l 308 (455)
++.+||+||+|||||++++.+-..+.-.- ..++++...+...+.+++... .++.|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 57899999999999999988776665332 345565554445555554321 14579999999853
Q ss_pred cccccccCCCccccccCCCccchhhHhhHhhh-hh--ccccCCC------CceEEEEecCCCC---CCCccccCCCceee
Q 012846 309 LELEDRQAQPTTVNVLKPLRPMQVTLSGLLNF-LD--GLWSSCG------DERIIVFTTNHKD---RLDPAVLRPGRMDV 376 (455)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~-lD--g~~~~~~------~~~iiI~tTN~~~---~LD~aLlrpgR~d~ 376 (455)
.. +. . ..+. ..+||.. || |.++... ..+.+|+++|... .+++.|+| .| .
T Consensus 113 ~~--d~--y-----------gtq~-~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~ 173 (272)
T PF12775_consen 113 QP--DK--Y-----------GTQP-PIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-N 173 (272)
T ss_dssp -----T--T-----------S--H-HHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-E
T ss_pred CC--CC--C-----------CCcC-HHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-E
Confidence 22 11 1 1111 2344432 33 4433221 2467778877532 47788888 77 5
Q ss_pred EEEeCCCCHHHHHHHHHHHcC
Q 012846 377 HIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 377 ~I~~~~p~~~~r~~l~~~~l~ 397 (455)
.+.+++|+.++...|+..++.
T Consensus 174 i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 174 ILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEE----TCCHHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHHHHHHh
Confidence 899999999998888777654
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.71 E-value=5.3e-08 Score=94.64 Aligned_cols=91 Identities=24% Similarity=0.471 Sum_probs=59.0
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCCh--
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSN-- 284 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~-- 284 (455)
+.++-+.++..+.....+..+. ++|. -+.+++||||||||||+|+.|||+++ |..++.+...++..+
T Consensus 78 ~~d~~~~~~~~~~~l~~~~~~~---~~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 78 EFDFEFQPGIDKKALEDLASLV---EFFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cccccCCcchhHHHHHHHHHHH---HHhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 3344444444444444443332 2222 35789999999999999999999987 677788877776421
Q ss_pred -----HHHH-HHHHhcCCceEEEEeccccc
Q 012846 285 -----SELR-RVLLSTGNRSILVVEDIDCS 308 (455)
Q Consensus 285 -----~~L~-~ll~~~~~~sIlliDeiD~l 308 (455)
.... ++.....+-.+|+|||+-..
T Consensus 150 ~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 150 AAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 1222 22333667789999999754
No 211
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.69 E-value=8.8e-08 Score=101.41 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=86.2
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc--eEEeeccccC---
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD--IYDLELSAVH--- 282 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~--~~~l~~~~~~--- 282 (455)
..|+++.|....++.+.-.+ .....++|.||||||||+++++++..+.-. -..++.+.+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 36999999888766543221 123579999999999999999998754210 0011111110
Q ss_pred ---------------------ChHH-------HHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhH
Q 012846 283 ---------------------SNSE-------LRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTL 334 (455)
Q Consensus 283 ---------------------~~~~-------L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~l 334 (455)
+... .+.-......+++|||||++.+.. ..+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~---------------------~~~ 312 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKR---------------------SVL 312 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCH---------------------HHH
Confidence 0000 111122334678999999997532 233
Q ss_pred hhHhhhhhc-cc--cC------CCCceEEEEecCCC-----C------------------CCCccccCCCceeeEEEeCC
Q 012846 335 SGLLNFLDG-LW--SS------CGDERIIVFTTNHK-----D------------------RLDPAVLRPGRMDVHIYMSY 382 (455)
Q Consensus 335 s~LL~~lDg-~~--~~------~~~~~iiI~tTN~~-----~------------------~LD~aLlrpgR~d~~I~~~~ 382 (455)
..|+..|+. .. .. -.....+|+++|.- . .|...|+. |||.++.++.
T Consensus 313 ~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~ 390 (499)
T TIGR00368 313 DALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPL 390 (499)
T ss_pred HHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcC
Confidence 445555532 10 00 11346788888852 1 58888999 9999999999
Q ss_pred CCHHH
Q 012846 383 CTPCG 387 (455)
Q Consensus 383 p~~~~ 387 (455)
++.++
T Consensus 391 ~~~~~ 395 (499)
T TIGR00368 391 LPPEK 395 (499)
T ss_pred CCHHH
Confidence 88764
No 212
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.68 E-value=1.1e-07 Score=101.54 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=101.5
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChH
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNS 285 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~ 285 (455)
.+++++|.....+.+.+.+...... +..+||+|++||||+++|++|.... +.+++.++|..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~-----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS-----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 4788999999999998888765432 4579999999999999999998764 57999999998853 3
Q ss_pred HHHHHHH------------------hcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-c
Q 012846 286 ELRRVLL------------------STGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-S 346 (455)
Q Consensus 286 ~L~~ll~------------------~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-~ 346 (455)
.+...++ ....++.|||||||.+.. .. ...|+..++.-. .
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~------------------~~---Q~~Ll~~l~~~~~~ 311 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL------------------AL---QAKLLRVLQYGEIQ 311 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH------------------HH---HHHHHHHHhcCCEe
Confidence 3332221 223567899999998854 22 244555554211 1
Q ss_pred CCC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHHcC
Q 012846 347 SCG------DERIIVFTTNHK-------DRLDPAVLRPGRM-DVHIYMSYCTP--CGFDTLAANYLG 397 (455)
Q Consensus 347 ~~~------~~~iiI~tTN~~-------~~LD~aLlrpgR~-d~~I~~~~p~~--~~r~~l~~~~l~ 397 (455)
..| -.+-||++||.. ..+.+.|.. |+ ...|++|.... ++...|++.|+.
T Consensus 312 ~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~ 376 (509)
T PRK05022 312 RVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLE 376 (509)
T ss_pred eCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHH
Confidence 101 134567777653 224444444 55 34577777765 566677776664
No 213
>PRK06921 hypothetical protein; Provisional
Probab=98.67 E-value=1.1e-07 Score=92.99 Aligned_cols=63 Identities=24% Similarity=0.358 Sum_probs=45.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc----CCceEEeeccccCCh-----HHHHHHHHhcCCceEEEEecccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL----NFDIYDLELSAVHSN-----SELRRVLLSTGNRSILVVEDIDC 307 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l----~~~~~~l~~~~~~~~-----~~L~~ll~~~~~~sIlliDeiD~ 307 (455)
..+++|+||||||||+|+.|||+++ +..++.++..++... ..+...+.......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4689999999999999999999976 566666665443211 12223344455778999999953
No 214
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.67 E-value=2.5e-07 Score=90.22 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=85.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCC-ceEEee--ccccC-------------------Ch----HHHHHHHHh---cCCc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNF-DIYDLE--LSAVH-------------------SN----SELRRVLLS---TGNR 297 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~-~~~~l~--~~~~~-------------------~~----~~L~~ll~~---~~~~ 297 (455)
.++|+||+|+|||++++.+++.+.. .+.... ..... .. ..+...+.. ..++
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998863 222111 11110 00 112222221 2367
Q ss_pred eEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCC---CCC----ccccC
Q 012846 298 SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKD---RLD----PAVLR 370 (455)
Q Consensus 298 sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~---~LD----~aLlr 370 (455)
.+|+|||+|.+.. .....+..|.+.... .+..+.||++ ..++ .+. ..+.+
T Consensus 125 ~vliiDe~~~l~~------------------~~~~~l~~l~~~~~~----~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~ 181 (269)
T TIGR03015 125 ALLVVDEAQNLTP------------------ELLEELRMLSNFQTD----NAKLLQIFLV-GQPEFRETLQSPQLQQLRQ 181 (269)
T ss_pred eEEEEECcccCCH------------------HHHHHHHHHhCcccC----CCCeEEEEEc-CCHHHHHHHcCchhHHHHh
Confidence 8999999997642 111222233332111 1112333333 3332 221 12445
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHHcCCCC----CCc-HHHHHHHhhcCCCCHHHHHHHH
Q 012846 371 PGRMDVHIYMSYCTPCGFDTLAANYLGITD----HPL-IYEIKEIMQNVRVTPADVGEQL 425 (455)
Q Consensus 371 pgR~d~~I~~~~p~~~~r~~l~~~~l~~~~----~~l-~~~i~~l~~~~~~tpa~i~~~l 425 (455)
|+...++++..+.++...++...+...+ ..+ .+.++.+....+..|..|..++
T Consensus 182 --r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~ 239 (269)
T TIGR03015 182 --RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILC 239 (269)
T ss_pred --heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHH
Confidence 8888999999999999998887775321 223 2455556666666666665543
No 215
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.63 E-value=5.2e-07 Score=86.36 Aligned_cols=171 Identities=20% Similarity=0.220 Sum_probs=94.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcC-CceEEEEeccccccccccccCCCccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNV 323 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~-~~sIlliDeiD~l~~~~~~~~~~~~~~~ 323 (455)
..|-.++||+|||||.+++++|+.+|..++.++|++..+-..+.++|..+. .++-++|||++++..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~------------- 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSE------------- 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSH-------------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhH-------------
Confidence 457789999999999999999999999999999999999999999998875 689999999998743
Q ss_pred cCCCccchhhHhhHhhhh-hccccCC------------CCceEEEEecCC----CCCCCccccCCCceeeEEEeCCCCHH
Q 012846 324 LKPLRPMQVTLSGLLNFL-DGLWSSC------------GDERIIVFTTNH----KDRLDPAVLRPGRMDVHIYMSYCTPC 386 (455)
Q Consensus 324 ~~~~~~~~~~ls~LL~~l-Dg~~~~~------------~~~~iiI~tTN~----~~~LD~aLlrpgR~d~~I~~~~p~~~ 386 (455)
..-..+++.+..+ +.+.... ....-++.|.|. ...||+.|.. +-+-+.|..|+..
T Consensus 99 -----~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~ 170 (231)
T PF12774_consen 99 -----EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLS 170 (231)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HH
T ss_pred -----HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHH
Confidence 1111122222111 1111100 011234556662 3568887765 4478999999988
Q ss_pred HHHHHHHHHcCCCC-CCcHHHHHHHhhcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012846 387 GFDTLAANYLGITD-HPLIYEIKEIMQNVRVTPADVGEQLLKNEDPEIALKGLLEFLN 443 (455)
Q Consensus 387 ~r~~l~~~~l~~~~-~~l~~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~ 443 (455)
...++.-.-.+..+ ..+..++..+.+. ..+.|-+....+-.|+.+..-|.
T Consensus 171 ~I~ei~L~s~GF~~a~~La~kl~~l~~l-------~~~~lS~q~hydfgLRalk~vl~ 221 (231)
T PF12774_consen 171 LIAEILLLSQGFKDAKSLAKKLVSLFQL-------CKEQLSKQDHYDFGLRALKSVLR 221 (231)
T ss_dssp HHHHHHHHCCCTSSHHHHHHHHHHHHHH-------HHHCS-SSTT---SHHHHHHHHH
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHH-------HHHhhccCccccccHHHHHHHHH
Confidence 76666554444332 2233444443321 11222234455555555554443
No 216
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2e-06 Score=84.63 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=49.4
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhh-CCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~-g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
-|+|+++.|+.+-=.+..-.++...-..+ .--.|+++|..||.|+|||.+|+-+|+..+.||+.++.+.+
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 46899999988755543322221111111 12246899999999999999999999999999998865544
No 217
>PRK09183 transposase/IS protein; Provisional
Probab=98.61 E-value=8.1e-08 Score=93.67 Aligned_cols=64 Identities=17% Similarity=0.302 Sum_probs=46.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCC-------hHHHHHHHHh-cCCceEEEEeccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHS-------NSELRRVLLS-TGNRSILVVEDIDCS 308 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~-------~~~L~~ll~~-~~~~sIlliDeiD~l 308 (455)
+.+++|+||||||||+|+.+++..+ |..+..++..++.. ...+...+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4679999999999999999997664 66777666554431 1123444544 457789999999864
No 218
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.61 E-value=1.3e-07 Score=98.40 Aligned_cols=158 Identities=22% Similarity=0.264 Sum_probs=102.3
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccc
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSA 280 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~ 280 (455)
+..+.+|++|+|......++++.+..... ....+|+.|.+||||..+|++|-+.. +.||+.+||+.
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~-----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAK-----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcC-----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 34567899999999888888887765543 24679999999999999999997754 67999999999
Q ss_pred cCChHHHHHHHHh-------------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhh
Q 012846 281 VHSNSELRRVLLS-------------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341 (455)
Q Consensus 281 ~~~~~~L~~ll~~-------------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 341 (455)
+. +.-|..-|+. .++.+-||+|||-.+.. .....||..|
T Consensus 307 iP-e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl---------------------~LQaKLLRVL 364 (560)
T COG3829 307 IP-ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL---------------------PLQAKLLRVL 364 (560)
T ss_pred CC-HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCH---------------------HHHHHHHHHH
Confidence 84 3333333332 23567999999986642 2335566555
Q ss_pred hc--ccc-----CCCCceEEEEecCCCCCCCccccCCCce--e-------eEEEeCCCCH--HHHHHHHHHHcC
Q 012846 342 DG--LWS-----SCGDERIIVFTTNHKDRLDPAVLRPGRM--D-------VHIYMSYCTP--CGFDTLAANYLG 397 (455)
Q Consensus 342 Dg--~~~-----~~~~~~iiI~tTN~~~~LD~aLlrpgR~--d-------~~I~~~~p~~--~~r~~l~~~~l~ 397 (455)
.. ++. .-.-.+-||++||+. |- .++..||| | ..|.+|+..+ ++...|+..|+.
T Consensus 365 QEkei~rvG~t~~~~vDVRIIAATN~n--L~-~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~ 435 (560)
T COG3829 365 QEKEIERVGGTKPIPVDVRIIAATNRN--LE-KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLD 435 (560)
T ss_pred hhceEEecCCCCceeeEEEEEeccCcC--HH-HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHH
Confidence 31 111 111246789999963 11 12223444 2 1245555543 666667776665
No 219
>PF13173 AAA_14: AAA domain
Probab=98.58 E-value=3.4e-07 Score=79.45 Aligned_cols=63 Identities=19% Similarity=0.384 Sum_probs=47.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC--CceEEeeccccCChH----HHHHHHHhc--CCceEEEEeccccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN--FDIYDLELSAVHSNS----ELRRVLLST--GNRSILVVEDIDCS 308 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~--~~~~~l~~~~~~~~~----~L~~ll~~~--~~~sIlliDeiD~l 308 (455)
+.++|+||.|+|||++++.+++.+. .+++.+++.+..... ++.+.+.+. ..+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998886 788888877654221 133444443 36799999999876
No 220
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.1e-06 Score=95.11 Aligned_cols=122 Identities=23% Similarity=0.319 Sum_probs=79.7
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCC-CCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCC----
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHS---- 283 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~-~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~---- 283 (455)
.|+|+++....|.+.+...-.. ++.+ +.-.+||.||.|+|||-||+|+|.++ .-.++.+++++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 5678888888777777544321 2222 23448999999999999999999987 35688899886321
Q ss_pred ---------hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc--ccCCC-
Q 012846 284 ---------NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL--WSSCG- 349 (455)
Q Consensus 284 ---------~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~--~~~~~- 349 (455)
.+..-++..... .-+||||||||..- ...++.|+..+|.- .+..|
T Consensus 637 igsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh---------------------~~v~n~llq~lD~GrltDs~Gr 695 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH---------------------PDVLNILLQLLDRGRLTDSHGR 695 (898)
T ss_pred cCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC---------------------HHHHHHHHHHHhcCccccCCCc
Confidence 122233333333 34999999999642 23456666667632 22222
Q ss_pred ----CceEEEEecCC
Q 012846 350 ----DERIIVFTTNH 360 (455)
Q Consensus 350 ----~~~iiI~tTN~ 360 (455)
.+.|||||+|-
T Consensus 696 ~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 696 EVDFKNAIFIMTSNV 710 (898)
T ss_pred EeeccceEEEEeccc
Confidence 35799999885
No 221
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.56 E-value=1.3e-06 Score=91.60 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=93.7
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHH
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSE 286 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~ 286 (455)
+..++|.....+.+.+.+..... ....++++|++||||+++|+++.... +.+++.++|..+. +..
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~-~~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIAP-----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP-ENL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC-hHH
Confidence 45567766666666665543321 23579999999999999999998765 4689999999874 344
Q ss_pred HHHHHHh------------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-cC
Q 012846 287 LRRVLLS------------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-SS 347 (455)
Q Consensus 287 L~~ll~~------------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-~~ 347 (455)
+...++. ...+++|||||||.+.. .. ...|+..++.-. ..
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~------------------~~---q~~l~~~l~~~~~~~ 264 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL------------------NL---QAKLLRFLQERVIER 264 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH------------------HH---HHHHHHHHhhCeEEe
Confidence 4444332 13568999999998754 22 244555554211 11
Q ss_pred CC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHHcC
Q 012846 348 CG------DERIIVFTTNHK-------DRLDPAVLRPGRM-DVHIYMSYCTP--CGFDTLAANYLG 397 (455)
Q Consensus 348 ~~------~~~iiI~tTN~~-------~~LD~aLlrpgR~-d~~I~~~~p~~--~~r~~l~~~~l~ 397 (455)
.| -.+-||+||+.. ..+.+.|.. |+ ...|.+|.... ++...|++.|+.
T Consensus 265 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~ 328 (445)
T TIGR02915 265 LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAEISITIPPLRSRDGDAVLLANAFLE 328 (445)
T ss_pred CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--HhccceecCCCchhchhhHHHHHHHHHH
Confidence 11 134566666643 234444443 44 35666766655 455556666654
No 222
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.56 E-value=1.4e-06 Score=82.22 Aligned_cols=157 Identities=23% Similarity=0.263 Sum_probs=84.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCce---EEeeccccCC--------------------------------------
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDI---YDLELSAVHS-------------------------------------- 283 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~---~~l~~~~~~~-------------------------------------- 283 (455)
...++|+||.|+|||+|++.+.+.+.-.- +.++......
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 45799999999999999999999884311 1111100000
Q ss_pred ---hHHHHHHHHhc---CCceEEEEecccccc-ccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 284 ---NSELRRVLLST---GNRSILVVEDIDCSL-ELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 284 ---~~~L~~ll~~~---~~~sIlliDeiD~l~-~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
...+..++... ..+.||+|||+|.+. ... .....+..|.+.++..... .++.+|+
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~----------------~~~~~~~~l~~~~~~~~~~--~~~~~v~ 161 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE----------------EDKDFLKSLRSLLDSLLSQ--QNVSIVI 161 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT----------------TTHHHHHHHHHHHHH------TTEEEEE
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc----------------chHHHHHHHHHHHhhcccc--CCceEEE
Confidence 11222222222 245999999999886 211 2234456677777764333 2344444
Q ss_pred ecCCC----C--CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC---cHHHHHHHhhcCCCCHHHHHH
Q 012846 357 TTNHK----D--RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP---LIYEIKEIMQNVRVTPADVGE 423 (455)
Q Consensus 357 tTN~~----~--~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~---l~~~i~~l~~~~~~tpa~i~~ 423 (455)
++... + .-.+.+.. |+.. +.+++.+.++..++++..+... .. ...+++.+..-.+..|..+..
T Consensus 162 ~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 162 TGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 33321 1 12233444 7876 9999999999999999865444 32 345667777766777877754
No 223
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.55 E-value=1.9e-07 Score=98.62 Aligned_cols=140 Identities=23% Similarity=0.254 Sum_probs=86.6
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCce--EEeeccccCC---
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDI--YDLELSAVHS--- 283 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~--~~l~~~~~~~--- 283 (455)
.|.++.|....++.+.-. ......++|+||||+|||++++.|+..+.-.- ..++.+.+.+
T Consensus 189 d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 577778876655543211 12346799999999999999999998663210 0111111110
Q ss_pred ------------------hHH----------HHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHh
Q 012846 284 ------------------NSE----------LRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLS 335 (455)
Q Consensus 284 ------------------~~~----------L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls 335 (455)
... .+.-......+.+|||||++.+. ..++.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~---------------------~~~~~ 312 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFE---------------------RRTLD 312 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCC---------------------HHHHH
Confidence 001 11112333467899999998653 23456
Q ss_pred hHhhhhh-ccc--cC------CCCceEEEEecCCCC---------------------CCCccccCCCceeeEEEeCCCCH
Q 012846 336 GLLNFLD-GLW--SS------CGDERIIVFTTNHKD---------------------RLDPAVLRPGRMDVHIYMSYCTP 385 (455)
Q Consensus 336 ~LL~~lD-g~~--~~------~~~~~iiI~tTN~~~---------------------~LD~aLlrpgR~d~~I~~~~p~~ 385 (455)
.|++.|+ +.. +. ...+..+|+|+|... .|..+++. |||+++.+++++.
T Consensus 313 ~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~ 390 (506)
T PRK09862 313 ALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPP 390 (506)
T ss_pred HHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCH
Confidence 6666663 221 11 123478899999642 47778999 9999999999987
Q ss_pred H
Q 012846 386 C 386 (455)
Q Consensus 386 ~ 386 (455)
+
T Consensus 391 ~ 391 (506)
T PRK09862 391 G 391 (506)
T ss_pred H
Confidence 6
No 224
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=3.2e-06 Score=81.66 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=79.7
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcC----------------------CceEEeeccc-cCChHHHHHHHHhc---C-
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLN----------------------FDIYDLELSA-VHSNSELRRVLLST---G- 295 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~----------------------~~~~~l~~~~-~~~~~~L~~ll~~~---~- 295 (455)
..+..+||+||+|+||..+|.++|..+- -+++.+.... ...-++++++.... +
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3467899999999999999999998762 1233322111 11235555555432 1
Q ss_pred ---CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCC
Q 012846 296 ---NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPG 372 (455)
Q Consensus 296 ---~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpg 372 (455)
..-|++|+++|.+-. ...+.||..++. ++.+.++|++|++++.+.|.+++
T Consensus 85 e~~~~KV~II~~ae~m~~---------------------~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~S-- 137 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---------------------QSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILS-- 137 (261)
T ss_pred hcCCCEEEEeccHhhhCH---------------------HHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhh--
Confidence 246999999998743 345888888876 35678999999999999999998
Q ss_pred ceeeEEEeCCC
Q 012846 373 RMDVHIYMSYC 383 (455)
Q Consensus 373 R~d~~I~~~~p 383 (455)
|+. .+.++.+
T Consensus 138 RCq-~~~~~~~ 147 (261)
T PRK05818 138 RCV-QYVVLSK 147 (261)
T ss_pred hee-eeecCCh
Confidence 874 4666665
No 225
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.53 E-value=9.2e-07 Score=84.87 Aligned_cols=164 Identities=18% Similarity=0.267 Sum_probs=112.1
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-CCce--------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-NFDI-------- 273 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-~~~~-------- 273 (455)
....|.+|+.+.+.++....+..... . + . -..+|+|||+|+||-+.+-++-+++ |..+
T Consensus 5 dkyrpksl~~l~~~~e~~~~Lksl~~-----~------~-d-~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~ 71 (351)
T KOG2035|consen 5 DKYRPKSLDELIYHEELANLLKSLSS-----T------G-D-FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETR 71 (351)
T ss_pred hhcCcchhhhcccHHHHHHHHHHhcc-----c------C-C-CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeE
Confidence 45568889999888877776654331 1 0 1 1369999999999999999998876 2111
Q ss_pred --------------------EEeeccccCCh--HHHHHHHHhcC---------C--ceEEEEeccccccccccccCCCcc
Q 012846 274 --------------------YDLELSAVHSN--SELRRVLLSTG---------N--RSILVVEDIDCSLELEDRQAQPTT 320 (455)
Q Consensus 274 --------------------~~l~~~~~~~~--~~L~~ll~~~~---------~--~sIlliDeiD~l~~~~~~~~~~~~ 320 (455)
+.+++++.+.. .-+.+++...+ + =-+++|-|+|.+-.
T Consensus 72 t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~---------- 141 (351)
T KOG2035|consen 72 TFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR---------- 141 (351)
T ss_pred EEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH----------
Confidence 12233333321 22344554432 1 15999999998742
Q ss_pred ccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC
Q 012846 321 VNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD 400 (455)
Q Consensus 321 ~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 400 (455)
.....|-..|+.+.+.| -+|+.+|....+=+++.. |+ ..|.+|.|+.++...++...+..++
T Consensus 142 -----------dAQ~aLRRTMEkYs~~~----RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~ 203 (351)
T KOG2035|consen 142 -----------DAQHALRRTMEKYSSNC----RLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEG 203 (351)
T ss_pred -----------HHHHHHHHHHHHHhcCc----eEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 12255666777775553 367788888889888887 76 6899999999999999999998887
Q ss_pred CCcHHHH
Q 012846 401 HPLIYEI 407 (455)
Q Consensus 401 ~~l~~~i 407 (455)
..+.+++
T Consensus 204 l~lp~~~ 210 (351)
T KOG2035|consen 204 LQLPKEL 210 (351)
T ss_pred ccCcHHH
Confidence 6665544
No 226
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.53 E-value=1.2e-07 Score=79.68 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=39.4
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcCCceEEEEecccccc
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCSL 309 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~ 309 (455)
|.||||||+|||++++.||..+...+-......+.....-.+.+.......++++||+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCccc
Confidence 57999999999999999988775332111111111111122345556677899999998654
No 227
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.50 E-value=8.5e-07 Score=93.72 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=99.1
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHH
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSE 286 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~ 286 (455)
+.+++|.....+.+.+.+..... ....+|+.|++||||+++|+++.... +.+++.++|+.+. ...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~-~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSR-----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP-KDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhc-----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC-HHH
Confidence 56678877666666666554322 24579999999999999999998875 4789999999883 344
Q ss_pred HHHHHHh------------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc--c
Q 012846 287 LRRVLLS------------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW--S 346 (455)
Q Consensus 287 L~~ll~~------------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~--~ 346 (455)
+...++. ...++.|||||||.+.. .. ...|+..++.-. .
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~------------------~~---q~~L~~~l~~~~~~~ 263 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL------------------DV---QTRLLRVLADGQFYR 263 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH------------------HH---HHHHHHHHhcCcEEe
Confidence 4444422 23467899999998754 22 245555554211 1
Q ss_pred CCC-----CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHHcC
Q 012846 347 SCG-----DERIIVFTTNHK-------DRLDPAVLRPGRM-DVHIYMSYCTP--CGFDTLAANYLG 397 (455)
Q Consensus 347 ~~~-----~~~iiI~tTN~~-------~~LD~aLlrpgR~-d~~I~~~~p~~--~~r~~l~~~~l~ 397 (455)
..+ -.+-||+||+.. ..+.+.|.. |+ ...|.+|+... ++...|+..|+.
T Consensus 264 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 264 VGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred CCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 011 124566676643 234556665 66 57788887765 667777777764
No 228
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=9.4e-06 Score=79.93 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=80.8
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCC----------------ceEEeeccc---cCChHHHHHHHHhcC------Cce
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNF----------------DIYDLELSA---VHSNSELRRVLLSTG------NRS 298 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~----------------~~~~l~~~~---~~~~~~L~~ll~~~~------~~s 298 (455)
.+..|||+||+|+||+.+|.++|..+-. +++.+.... ...-++++.+..... ..-
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 4668999999999999999999987632 344443221 123456666654442 346
Q ss_pred EEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEE
Q 012846 299 ILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHI 378 (455)
Q Consensus 299 IlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I 378 (455)
|++||++|.+-. ...+.||..|+.. +++.++|+.|++++.|.|.+++ |+ ..+
T Consensus 98 v~ii~~ad~mt~---------------------~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~S--Rc-q~~ 149 (290)
T PRK05917 98 IYIIHEADRMTL---------------------DAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRS--RS-LSI 149 (290)
T ss_pred EEEEechhhcCH---------------------HHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHh--cc-eEE
Confidence 999999998743 2347889988764 4568999999999999999998 77 466
Q ss_pred EeCCC
Q 012846 379 YMSYC 383 (455)
Q Consensus 379 ~~~~p 383 (455)
.|+.+
T Consensus 150 ~~~~~ 154 (290)
T PRK05917 150 HIPME 154 (290)
T ss_pred Eccch
Confidence 66643
No 229
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.3e-05 Score=79.73 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=89.6
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCC-------------ceEEeec-cccCChHHHHHHHHhcC-------CceEEEE
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNF-------------DIYDLEL-SAVHSNSELRRVLLSTG-------NRSILVV 302 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~-------------~~~~l~~-~~~~~~~~L~~ll~~~~-------~~sIlli 302 (455)
.+..|||+|+.|.||+.++.++++.+-. ++..++. +....-++++.+....+ .+-|++|
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 3568999999999999999999988611 2333441 11123467777765542 5579999
Q ss_pred eccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 012846 303 EDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSY 382 (455)
Q Consensus 303 DeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~ 382 (455)
|++|.+.. ...+.||..|+.. ++..++|++|+.++.|-|++.. |+ ..++++.
T Consensus 97 ~~~e~m~~---------------------~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~ 148 (299)
T PRK07132 97 KNIEKTSN---------------------SLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKE 148 (299)
T ss_pred ecccccCH---------------------HHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCC
Confidence 99987632 2347788888764 4568888888889999999987 76 5799999
Q ss_pred CCHHHHHHHHHH
Q 012846 383 CTPCGFDTLAAN 394 (455)
Q Consensus 383 p~~~~r~~l~~~ 394 (455)
++.++....+..
T Consensus 149 l~~~~l~~~l~~ 160 (299)
T PRK07132 149 PDQQKILAKLLS 160 (299)
T ss_pred CCHHHHHHHHHH
Confidence 998887765553
No 230
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.47 E-value=6.6e-07 Score=90.79 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=101.5
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeec---------
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL--------- 278 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~--------- 278 (455)
-.|.-++|.+..|..|.-... .|.-.|+|+-|+.|||||++++|||..|.--.....|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 458889999999987765432 1223589999999999999999999887321111111
Q ss_pred -----------------------------cccCChH------HHHHHHH-----------hcCCceEEEEeccccccccc
Q 012846 279 -----------------------------SAVHSNS------ELRRVLL-----------STGNRSILVVEDIDCSLELE 312 (455)
Q Consensus 279 -----------------------------~~~~~~~------~L~~ll~-----------~~~~~sIlliDeiD~l~~~~ 312 (455)
....+++ .+.+.+. ...++.||.|||+..+-+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d-- 158 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD-- 158 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH--
Confidence 0001111 2233332 123678999999986642
Q ss_pred cccCCCccccccCCCccchhhHhhHhhhhh---------ccccCCCCceEEEEecCCC-CCCCccccCCCceeeEEEeCC
Q 012846 313 DRQAQPTTVNVLKPLRPMQVTLSGLLNFLD---------GLWSSCGDERIIVFTTNHK-DRLDPAVLRPGRMDVHIYMSY 382 (455)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD---------g~~~~~~~~~iiI~tTN~~-~~LD~aLlrpgR~d~~I~~~~ 382 (455)
.....||+.+. |+.-...-.+++|+|+|.- ..|-|-|+. ||..+|...+
T Consensus 159 -------------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~ 217 (423)
T COG1239 159 -------------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHY 217 (423)
T ss_pred -------------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccC
Confidence 23455665553 3333333468899999954 578889999 9999999977
Q ss_pred CCH-HHHHHHHHHHcCC
Q 012846 383 CTP-CGFDTLAANYLGI 398 (455)
Q Consensus 383 p~~-~~r~~l~~~~l~~ 398 (455)
|.. +++.++.+.-+..
T Consensus 218 ~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 218 PLDLEERVEIIRRRLAF 234 (423)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 765 6777777765443
No 231
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.46 E-value=5.1e-06 Score=80.32 Aligned_cols=62 Identities=29% Similarity=0.351 Sum_probs=40.3
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC--CceEEeeccc
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN--FDIYDLELSA 280 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~--~~~~~l~~~~ 280 (455)
+-++|+...++..- .+...++.+ +-.+|++||.||||||||.||-+|+.++| .||.-+..++
T Consensus 38 ~g~vGQ~~AReAag-iivdlik~K-------kmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSE 101 (456)
T KOG1942|consen 38 AGFVGQENAREAAG-IIVDLIKSK-------KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSE 101 (456)
T ss_pred cccccchhhhhhhh-HHHHHHHhh-------hccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchh
Confidence 45677777765432 222223332 12368999999999999999999999995 3444333333
No 232
>PHA02624 large T antigen; Provisional
Probab=98.45 E-value=1.1e-06 Score=93.38 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=80.3
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCcc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTT 320 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~ 320 (455)
|+|.++.+|||||||||||+++.+|++.++..+..+++.. +.+.-.|.-+...-+.+|||+-.-.-.... -..+
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~-Lp~G- 500 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPADNKD-LPSG- 500 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeecccccccccc-CCcc-
Confidence 6788899999999999999999999999976666666433 233334444556789999999633210000 0000
Q ss_pred ccccCCCccchhhHhhHhhhhhccccCCCC----------ceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 012846 321 VNVLKPLRPMQVTLSGLLNFLDGLWSSCGD----------ERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSY 382 (455)
Q Consensus 321 ~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~----------~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~ 382 (455)
..-..+.-|-|.|||...-+=+ ---.|.|||+ ..||..+.- ||-.++.|..
T Consensus 501 --------~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 501 --------QGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred --------cccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 1111245677888886211100 0135678886 567778877 8988888765
No 233
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=2e-05 Score=77.85 Aligned_cols=119 Identities=16% Similarity=0.223 Sum_probs=83.7
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcC------------------------CceEEeeccc-cCChHHHHHHHHhcC---
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLN------------------------FDIYDLELSA-VHSNSELRRVLLSTG--- 295 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~------------------------~~~~~l~~~~-~~~~~~L~~ll~~~~--- 295 (455)
.+.+|||+|| +||+++|.++|..+- -+++.+.... ...-++++.+.....
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 4678999996 689999999997652 2233333321 123467777665443
Q ss_pred ---CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCC
Q 012846 296 ---NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPG 372 (455)
Q Consensus 296 ---~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpg 372 (455)
..-|++||++|.+.. ..-+.||..|+.- +.+.++|++|++++.|-|.+++
T Consensus 101 ~~~~~kV~II~~ad~m~~---------------------~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~S-- 153 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHV---------------------NAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKS-- 153 (290)
T ss_pred ccCCcEEEEeehhhhcCH---------------------HHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHH--
Confidence 357999999998743 3358899988763 4568999999999999999998
Q ss_pred ceeeEEEeCCCCHHHHHHHHH
Q 012846 373 RMDVHIYMSYCTPCGFDTLAA 393 (455)
Q Consensus 373 R~d~~I~~~~p~~~~r~~l~~ 393 (455)
|+ .+|.|+. +.+...+++.
T Consensus 154 Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 154 RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cc-eeeeCCC-cHHHHHHHHH
Confidence 87 5788866 5555444444
No 234
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.43 E-value=7e-06 Score=89.27 Aligned_cols=50 Identities=34% Similarity=0.467 Sum_probs=40.4
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD 272 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~ 272 (455)
.-+++++|.++.++.+...+. . +++++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~----~-----------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK----Q-----------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH----c-----------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 458899999988876655443 1 3489999999999999999999999754
No 235
>PF05729 NACHT: NACHT domain
Probab=98.38 E-value=2.8e-06 Score=75.83 Aligned_cols=134 Identities=19% Similarity=0.243 Sum_probs=72.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCC---------ceEEeeccccCChH---HHHHHH------------------HhcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNF---------DIYDLELSAVHSNS---ELRRVL------------------LSTG 295 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~---------~~~~l~~~~~~~~~---~L~~ll------------------~~~~ 295 (455)
|-++++|+||+|||++++.++..+.. -++.+.+.+..... .+.+.+ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35789999999999999999876521 12233433332211 222222 2234
Q ss_pred CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCC-CCCccccCCCce
Q 012846 296 NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKD-RLDPAVLRPGRM 374 (455)
Q Consensus 296 ~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~-~LD~aLlrpgR~ 374 (455)
.+.+|+||.+|.+...... . ........|...+..- . ..+-.++|.+..+.. .+...+..
T Consensus 81 ~~~llilDglDE~~~~~~~--~-----------~~~~~~~~l~~l~~~~-~-~~~~~liit~r~~~~~~~~~~~~~---- 141 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS--Q-----------ERQRLLDLLSQLLPQA-L-PPGVKLIITSRPRAFPDLRRRLKQ---- 141 (166)
T ss_pred CceEEEEechHhcccchhh--h-----------HHHHHHHHHHHHhhhc-c-CCCCeEEEEEcCChHHHHHHhcCC----
Confidence 6789999999988641111 0 0111112222333321 0 112234443332221 22222222
Q ss_pred eeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 375 DVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 375 d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
...+++...+.++.+++++.|+..
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 142 AQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred CcEEEECCCCHHHHHHHHHHHhhc
Confidence 157899999999999999998853
No 236
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.36 E-value=3.7e-06 Score=88.49 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=61.7
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHH
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSE 286 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~ 286 (455)
+..+++.......+.+.+..... ....+|++|++||||+++|+++.... +.+++.++|..+. +..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~-~~~ 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP-ESL 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC-HHH
Confidence 34566665555556555544432 23579999999999999999997754 5789999999875 334
Q ss_pred HHHHHHh------------------cCCceEEEEeccccccc
Q 012846 287 LRRVLLS------------------TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 287 L~~ll~~------------------~~~~sIlliDeiD~l~~ 310 (455)
+...++. ...+++|||||||.+..
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~ 251 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL 251 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH
Confidence 4444322 12467999999998854
No 237
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.36 E-value=3e-06 Score=89.35 Aligned_cols=152 Identities=19% Similarity=0.254 Sum_probs=96.9
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHHH
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSEL 287 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~L 287 (455)
..++|.....+++...+.... .....+++.|.+||||+++++++.... +.+++.++|..+. ...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 456777666666666665432 123579999999999999999998764 5689999999873 3444
Q ss_pred HHHHHh------------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc-ccCC
Q 012846 288 RRVLLS------------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL-WSSC 348 (455)
Q Consensus 288 ~~ll~~------------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~-~~~~ 348 (455)
...++. ...++.|||||||.+.. .. ...|+..++.- ....
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~------------------~~---q~~ll~~l~~~~~~~~ 260 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL------------------DA---QTRLLRVLADGEFYRV 260 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH------------------HH---HHHHHHHHhcCcEEEC
Confidence 444422 22468999999998754 22 34455555421 1110
Q ss_pred C------CceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCC--HHHHHHHHHHHcC
Q 012846 349 G------DERIIVFTTNHK-------DRLDPAVLRPGRMD-VHIYMSYCT--PCGFDTLAANYLG 397 (455)
Q Consensus 349 ~------~~~iiI~tTN~~-------~~LD~aLlrpgR~d-~~I~~~~p~--~~~r~~l~~~~l~ 397 (455)
+ -.+-||+||+.. ..+.+.|.. |+. .+|++|... .++...|+..|+.
T Consensus 261 ~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 261 GGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred CCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 1 124566666643 233444444 553 588888887 5788888887764
No 238
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.35 E-value=1.6e-06 Score=96.22 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=78.0
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCc-------eEEeeccccCC-hH------HHHHHHHhcCCceEEEEeccccccccc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFD-------IYDLELSAVHS-NS------ELRRVLLSTGNRSILVVEDIDCSLELE 312 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~-------~~~l~~~~~~~-~~------~L~~ll~~~~~~sIlliDeiD~l~~~~ 312 (455)
.+||.|+||||||.+++++++..... +..+.++.... .. .+..-....+..++++|||+|.+..
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~-- 571 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN-- 571 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH--
Confidence 59999999999999999999865433 33333333211 00 0000011123568999999998743
Q ss_pred cccCCCccccccCCCccchhhHhhHhhhhhc---------cccCCCCceEEEEecCCCC-------------CCCccccC
Q 012846 313 DRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG---------LWSSCGDERIIVFTTNHKD-------------RLDPAVLR 370 (455)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg---------~~~~~~~~~iiI~tTN~~~-------------~LD~aLlr 370 (455)
.....|+..|+. ....-....-||+|+|... .|+++|+.
T Consensus 572 -------------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS 632 (915)
T PTZ00111 572 -------------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT 632 (915)
T ss_pred -------------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh
Confidence 122445555532 1111123467888999742 36799999
Q ss_pred CCceeeE-EEeCCCCHHHHHHHHHHHc
Q 012846 371 PGRMDVH-IYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 371 pgR~d~~-I~~~~p~~~~r~~l~~~~l 396 (455)
|||.. +.++.|+.+.=+.|+.+.+
T Consensus 633 --RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 633 --RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred --hhcEEEEecCCCChHHHHHHHHHHH
Confidence 99877 5568888776666655544
No 239
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.35 E-value=1.7e-05 Score=84.77 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=85.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc----------CCceEEeeccccCChHHH----------------------HHHHH-
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYDLELSAVHSNSEL----------------------RRVLL- 292 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~l~~~~~~~~~~L----------------------~~ll~- 292 (455)
..+++.|-||||||.++..+-+.| .++++.++...+.+..++ ..-|.
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 357899999999999999998765 366777776666543222 22222
Q ss_pred --hcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccC
Q 012846 293 --STGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLR 370 (455)
Q Consensus 293 --~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlr 370 (455)
....++||+|||.|.|.. .++ .-|-|++|-... .+...+||+..|..+ |+..++.
T Consensus 503 ~k~~~~~~VvLiDElD~Lvt------------------r~Q---dVlYn~fdWpt~-~~sKLvvi~IaNTmd-lPEr~l~ 559 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVT------------------RSQ---DVLYNIFDWPTL-KNSKLVVIAIANTMD-LPERLLM 559 (767)
T ss_pred CCCCCCCEEEEeccHHHHhc------------------ccH---HHHHHHhcCCcC-CCCceEEEEeccccc-CHHHHhc
Confidence 112578999999999875 223 334566664433 234567777666654 3333331
Q ss_pred ---CCcee-eEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 371 ---PGRMD-VHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 371 ---pgR~d-~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
..|++ ..|.|...+.+|..+|+..-|...
T Consensus 560 nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 560 NRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred cchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 12553 357888889999999999877654
No 240
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.35 E-value=6.3e-06 Score=81.00 Aligned_cols=186 Identities=15% Similarity=0.144 Sum_probs=100.6
Q ss_pred cccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---------CCceEEeeccccCCh
Q 012846 214 AMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---------NFDIYDLELSAVHSN 284 (455)
Q Consensus 214 ~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---------~~~~~~l~~~~~~~~ 284 (455)
+|.+..+ ++.+.++..+..|. ..-..++||+|++|.|||++++..+... ..|++.++.....++
T Consensus 37 IgY~~A~-~~L~~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 37 IGYPRAK-EALDRLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred ecCHHHH-HHHHHHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 3444343 45566666555542 2234689999999999999999998643 246777765554444
Q ss_pred HHHHHHH------------------------HhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhh
Q 012846 285 SELRRVL------------------------LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNF 340 (455)
Q Consensus 285 ~~L~~ll------------------------~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 340 (455)
..+-..+ ...-+.-+|+|||++.++..+. .....+||.
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------------------~~qr~~Ln~ 171 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------------------RKQREFLNA 171 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------------------HHHHHHHHH
Confidence 3332222 1122456999999999875221 112344555
Q ss_pred hhccccCCCCceEEEEecCCCC--CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC----CCc-HHHH-HHHhh
Q 012846 341 LDGLWSSCGDERIIVFTTNHKD--RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD----HPL-IYEI-KEIMQ 412 (455)
Q Consensus 341 lDg~~~~~~~~~iiI~tTN~~~--~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~----~~l-~~~i-~~l~~ 412 (455)
+-.+.+...=.++.|+|..-.. .-|+-+-+ ||+.+..=+.-..+++..|+..|-.... ..+ ..++ ..+..
T Consensus 172 LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~ 249 (302)
T PF05621_consen 172 LKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHE 249 (302)
T ss_pred HHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 5444322221244444433222 33677777 9964443333344667777776643321 111 2233 34445
Q ss_pred cCCCCHHHHHHHHH
Q 012846 413 NVRVTPADVGEQLL 426 (455)
Q Consensus 413 ~~~~tpa~i~~~l~ 426 (455)
..+.+-+++..++.
T Consensus 250 ~s~G~iG~l~~ll~ 263 (302)
T PF05621_consen 250 RSEGLIGELSRLLN 263 (302)
T ss_pred HcCCchHHHHHHHH
Confidence 55555566655543
No 241
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=1.4e-06 Score=75.20 Aligned_cols=64 Identities=23% Similarity=0.491 Sum_probs=42.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc--------CCceEEeeccccCChHHHH---------------------HHHHhc-
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL--------NFDIYDLELSAVHSNSELR---------------------RVLLST- 294 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l--------~~~~~~l~~~~~~~~~~L~---------------------~ll~~~- 294 (455)
++.++++||||+|||++++.++..+ +.+++.+++....+...+. +.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999887 6788888776654322222 222111
Q ss_pred --CCceEEEEeccccc
Q 012846 295 --GNRSILVVEDIDCS 308 (455)
Q Consensus 295 --~~~sIlliDeiD~l 308 (455)
....+|+|||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 12359999999986
No 242
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=7.9e-07 Score=91.47 Aligned_cols=48 Identities=29% Similarity=0.463 Sum_probs=39.3
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
...|.||.|++..|+.+.-.. ...+++|++||||||||++|+-|..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 446999999999998875433 235789999999999999999887655
No 243
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.33 E-value=1.5e-06 Score=85.00 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=97.7
Q ss_pred eeeecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc------e
Q 012846 200 HWITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD------I 273 (455)
Q Consensus 200 ~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~------~ 273 (455)
.+++...|..++++++.++....+.+. . +.+.-...|+|||||||||+.+-|.|..+-.+ +
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~----~---------~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~ 96 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRY----S---------GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSML 96 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHh----c---------cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHH
Confidence 345678899999999988776655443 1 11212279999999999999999999987553 1
Q ss_pred EEeeccccCC---hHHHHHHHHhcC---------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhh
Q 012846 274 YDLELSAVHS---NSELRRVLLSTG---------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL 341 (455)
Q Consensus 274 ~~l~~~~~~~---~~~L~~ll~~~~---------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 341 (455)
..++.++-.. ...=.+.|..+. ..-.+++||+|++.. .. .+.|-..+
T Consensus 97 lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~------------------~A---QnALRRvi 155 (360)
T KOG0990|consen 97 LELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR------------------DA---QNALRRVI 155 (360)
T ss_pred HHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH------------------HH---HHHHHHHH
Confidence 2233333221 111222333332 456899999998743 11 13333344
Q ss_pred hccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 342 DGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 342 Dg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
..+. .+.-++...|++..+-|++.. |+. ...+...+..+......+.+..+
T Consensus 156 ek~t----~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 156 EKYT----ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred HHhc----cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcc
Confidence 4432 234455779999999999987 663 44555556555555555555444
No 244
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.32 E-value=2.2e-06 Score=95.44 Aligned_cols=174 Identities=22% Similarity=0.246 Sum_probs=114.3
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHh-chhHHhhhCCCC-Cc-eeEEeCCCCCChHHHHHHHHHHcCCceEEeecc
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVK-RKDYYRRVGKAW-KR-GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~-~~~~y~~~g~~~-~r-giLL~GppGTGKT~la~aiA~~l~~~~~~l~~~ 279 (455)
....|.....+.+..+.-..+.+.+...-. .+..|..-+... .. ..|++||||.|||+.+++.|..+++.++..+.+
T Consensus 312 ~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas 391 (871)
T KOG1968|consen 312 EKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNAS 391 (871)
T ss_pred cccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcc
Confidence 345566667888887777777776655411 111222211111 12 359999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHhcC--------------------CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhh
Q 012846 280 AVHSNSELRRVLLSTG--------------------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLN 339 (455)
Q Consensus 280 ~~~~~~~L~~ll~~~~--------------------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 339 (455)
...++..+...+..+. ...||++||+|.+.. .+|+. -..++++..
T Consensus 392 ~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg~--------------v~~l~~l~~ 456 (871)
T KOG1968|consen 392 DVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRGG--------------VSKLSSLCK 456 (871)
T ss_pred ccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhhh--------------HHHHHHHHH
Confidence 9887766665554321 124999999998875 33321 112334433
Q ss_pred hhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 012846 340 FLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHP 402 (455)
Q Consensus 340 ~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~ 402 (455)
. ..+-||+|+|..+......+. |-+.-|+|+.|+.+++..-+..++..+...
T Consensus 457 k---------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~k 508 (871)
T KOG1968|consen 457 K---------SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIK 508 (871)
T ss_pred h---------ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhccccee
Confidence 1 125688888877666553333 445789999999999887777776655433
No 245
>PRK15115 response regulator GlrR; Provisional
Probab=98.31 E-value=3.5e-06 Score=88.38 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=79.2
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHHHHHHHHh------------------cCCceEEEEe
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSELRRVLLS------------------TGNRSILVVE 303 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~L~~ll~~------------------~~~~sIlliD 303 (455)
...++++|++||||+++|+++.... +.+++.++|..+. +..+...++. ...+++||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALP-EQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCC-HHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 3469999999999999999998764 5799999999874 3444443322 2346799999
Q ss_pred ccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-cCCC------CceEEEEecCCCCCCCccccCCCce--
Q 012846 304 DIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-SSCG------DERIIVFTTNHKDRLDPAVLRPGRM-- 374 (455)
Q Consensus 304 eiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-~~~~------~~~iiI~tTN~~~~LD~aLlrpgR~-- 374 (455)
|||.+.. .. ...|+..++.-. ...| -.+.+|+||+.. ++. ++..|+|
T Consensus 236 ~i~~l~~------------------~~---q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~-~~~~~~f~~ 291 (444)
T PRK15115 236 EIGDMPA------------------PL---QVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPK-AMARGEFRE 291 (444)
T ss_pred ccccCCH------------------HH---HHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHH-HHHcCCccH
Confidence 9998854 22 244555554211 1111 135677777742 322 2233454
Q ss_pred -------eeEEEeCCCCH--HHHHHHHHHHcC
Q 012846 375 -------DVHIYMSYCTP--CGFDTLAANYLG 397 (455)
Q Consensus 375 -------d~~I~~~~p~~--~~r~~l~~~~l~ 397 (455)
...|.+|.... ++...|++.|+.
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~ 323 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLR 323 (444)
T ss_pred HHHHhhceeeecCCChHhccccHHHHHHHHHH
Confidence 45566666554 445556666654
No 246
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.30 E-value=1.9e-05 Score=82.25 Aligned_cols=73 Identities=25% Similarity=0.411 Sum_probs=55.3
Q ss_pred CceeeeecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 197 DSWHWITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 197 ~~~~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
..| +....|.+.++|+-......+|.+++..+.... .....+-+||+||+|+|||+.++.||+++|+.+..-
T Consensus 70 elW--~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~------~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 70 ELW--VEKYKPRTLEELAVHKKKISEVKQWLKQVAEFT------PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred chh--HHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhc------cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 345 356789999999999888888887776222111 112245689999999999999999999999988764
Q ss_pred e
Q 012846 277 E 277 (455)
Q Consensus 277 ~ 277 (455)
.
T Consensus 142 ~ 142 (634)
T KOG1970|consen 142 S 142 (634)
T ss_pred c
Confidence 3
No 247
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.27 E-value=3.3e-06 Score=89.59 Aligned_cols=159 Identities=21% Similarity=0.287 Sum_probs=93.8
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhC-CCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccc--c------C
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA--V------H 282 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g-~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~--~------~ 282 (455)
+|.+.+++|+.|.-.| |-.....+..-| ...-.+|||+|.||||||-|.+.+++.+....|.---+. + .
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 5677888888775443 322222222222 111245999999999999999999999877776421111 0 1
Q ss_pred ChHHHHHHHHhc-----CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhh---------ccccCC
Q 012846 283 SNSELRRVLLST-----GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD---------GLWSSC 348 (455)
Q Consensus 283 ~~~~L~~ll~~~-----~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD---------g~~~~~ 348 (455)
-+.+-++++.+. +..+|.+|||+|.+.... -+.|+..|+ |+..+-
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dSt---------------------rSvLhEvMEQQTvSIAKAGII~sL 566 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSDST---------------------RSVLHEVMEQQTLSIAKAGIIASL 566 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhHHH---------------------HHHHHHHHHHhhhhHhhcceeeec
Confidence 123334444443 368899999999985411 133333332 222211
Q ss_pred CCceEEEEecCCCC-------------CCCccccCCCceeeEEE-eCCCCHHHHHHHHHHH
Q 012846 349 GDERIIVFTTNHKD-------------RLDPAVLRPGRMDVHIY-MSYCTPCGFDTLAANY 395 (455)
Q Consensus 349 ~~~~iiI~tTN~~~-------------~LD~aLlrpgR~d~~I~-~~~p~~~~r~~l~~~~ 395 (455)
.-.--|+++.|..+ .|+|.|++ |||.+.. +..|++..=+.|..+.
T Consensus 567 NAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred cccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHH
Confidence 22234778888432 47899999 9997754 4666665444455443
No 248
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.23 E-value=5.2e-05 Score=79.01 Aligned_cols=153 Identities=19% Similarity=0.231 Sum_probs=99.2
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChH
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNS 285 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~ 285 (455)
.+..++|.....+++.+.+...... .-.+|++|++||||-.+|++|-... +.||+.+||..+. ..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s-----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip-~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS-----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP-EN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC-HH
Confidence 4677888888888888877655433 4579999999999999999997765 4699999999985 33
Q ss_pred HHHHHHHh------------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhh-cccc
Q 012846 286 ELRRVLLS------------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD-GLWS 346 (455)
Q Consensus 286 ~L~~ll~~------------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD-g~~~ 346 (455)
-+..-|+. ...++.||||||..+.- . ....||..|. +-..
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl------------------~---~Q~kLLRvLqe~~~~ 265 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPL------------------E---LQVKLLRVLQEREFE 265 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCH------------------H---HHHHHHHHHHcCeeE
Confidence 34443333 23568999999987643 2 2344555553 1111
Q ss_pred CCCC------ceEEEEecCCCCCCCccccCCCce--------e-eEEEeCCCCH--HHHHHHHHHHcC
Q 012846 347 SCGD------ERIIVFTTNHKDRLDPAVLRPGRM--------D-VHIYMSYCTP--CGFDTLAANYLG 397 (455)
Q Consensus 347 ~~~~------~~iiI~tTN~~~~LD~aLlrpgR~--------d-~~I~~~~p~~--~~r~~l~~~~l~ 397 (455)
.-|+ .+-||++||.. |. .....||| . ..|++|...+ ++.--|+++|+.
T Consensus 266 rvG~~~~i~vdvRiIaaT~~d--L~-~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~ 330 (464)
T COG2204 266 RVGGNKPIKVDVRIIAATNRD--LE-EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLK 330 (464)
T ss_pred ecCCCcccceeeEEEeecCcC--HH-HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHH
Confidence 1121 35688999863 11 12222333 2 2466666654 666777777764
No 249
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.23 E-value=1.5e-06 Score=88.52 Aligned_cols=99 Identities=20% Similarity=0.366 Sum_probs=60.3
Q ss_pred CCCCceeEEeCCCCCChHHHHHHHHHHcCCc------eEEe--e----ccccC-ChHHHHHHHHhcCCc-eEEEEecccc
Q 012846 242 KAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD------IYDL--E----LSAVH-SNSELRRVLLSTGNR-SILVVEDIDC 307 (455)
Q Consensus 242 ~~~~rgiLL~GppGTGKT~la~aiA~~l~~~------~~~l--~----~~~~~-~~~~L~~ll~~~~~~-sIlliDeiD~ 307 (455)
.+.++|++||||+|+|||+|.....+.+... +... + +..+. ....+..+.....+. .+|+|||+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 4568999999999999999999998877541 1110 0 00000 112233333333444 4999999974
Q ss_pred ccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCC-CCC
Q 012846 308 SLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHK-DRL 364 (455)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~-~~L 364 (455)
--- .....+..|+..+ +. .++++|+|+|.+ ++|
T Consensus 139 ~Di------------------aDAmil~rLf~~l---~~---~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 139 TDI------------------ADAMILKRLFEAL---FK---RGVVLVATSNRPPEDL 172 (362)
T ss_pred cch------------------hHHHHHHHHHHHH---HH---CCCEEEecCCCChHHH
Confidence 311 2334566676655 22 358999999964 444
No 250
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=5e-05 Score=77.96 Aligned_cols=160 Identities=16% Similarity=0.072 Sum_probs=105.7
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----C-CceEEeeccccCCh
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----N-FDIYDLELSAVHSN 284 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----~-~~~~~l~~~~~~~~ 284 (455)
=+++.|.+.....+.+++...+..+ .+.++.+.|-||||||.+..-+-..+ . ...+.++|..+...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~---------t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELN---------TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcc---------cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch
Confidence 4678888888888887776665442 35678999999999998887664433 2 34578888876432
Q ss_pred HH---------------------HHHHHHhc----CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhh
Q 012846 285 SE---------------------LRRVLLST----GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLN 339 (455)
Q Consensus 285 ~~---------------------L~~ll~~~----~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 339 (455)
.. ..+.|... ..+-++++||+|.+.. ..+.++-
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t------------------r~~~vLy---- 277 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT------------------RSQTVLY---- 277 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh------------------cccceee----
Confidence 11 12222221 2367999999999974 1122222
Q ss_pred hhhccccCCCCceEEEEecCCCCCCCccccC----CCceeeEEEeCCCCHHHHHHHHHHHcCCCC
Q 012846 340 FLDGLWSSCGDERIIVFTTNHKDRLDPAVLR----PGRMDVHIYMSYCTPCGFDTLAANYLGITD 400 (455)
Q Consensus 340 ~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlr----pgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 400 (455)
.++.+-..++..+|+|+..|..+.-|..|.| -+--...+.|++.+.++..+|++.-+....
T Consensus 278 ~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 278 TLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred eehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 2222223344568889999988766655532 233356789999999999999998876653
No 251
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.20 E-value=4.4e-05 Score=89.35 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=43.4
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
....+..+++++|.++..++|...+.. +....+-+-++||+|+|||+||+++++.+..
T Consensus 176 ~~~~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 176 NLTPSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccccCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 334556789999998888887765531 1223467889999999999999999887643
No 252
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.20 E-value=1.2e-05 Score=86.86 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=84.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCC--ceEEeecccc----CChHHHHHHHHh-----------cCCceEEEEeccccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNF--DIYDLELSAV----HSNSELRRVLLS-----------TGNRSILVVEDIDCS 308 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~--~~~~l~~~~~----~~~~~L~~ll~~-----------~~~~sIlliDeiD~l 308 (455)
.|+||-|++|||||+++++++..+.. ++..+..+.- ...-+|...+.. ...++|||+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 58999999999999999999999864 7766644332 123344444422 234689999999865
Q ss_pred cccccccCCCccccccCCCccchhhHhhHhhhhhc---------cccCCCCceEEEEecCCC---CCCCccccCCCceee
Q 012846 309 LELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG---------LWSSCGDERIIVFTTNHK---DRLDPAVLRPGRMDV 376 (455)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg---------~~~~~~~~~iiI~tTN~~---~~LD~aLlrpgR~d~ 376 (455)
- ..+++.|+..|+. .........++|+|-|.. ..|.++++. ||++
T Consensus 106 ~---------------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l 162 (584)
T PRK13406 106 E---------------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAF 162 (584)
T ss_pred C---------------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEE
Confidence 3 3567888888852 222222346777764432 458999999 9999
Q ss_pred EEEeCCCCHHHH
Q 012846 377 HIYMSYCTPCGF 388 (455)
Q Consensus 377 ~I~~~~p~~~~r 388 (455)
+|.+++++..+.
T Consensus 163 ~v~v~~~~~~~~ 174 (584)
T PRK13406 163 HLDLDGLALRDA 174 (584)
T ss_pred EEEcCCCChHHh
Confidence 999999988653
No 253
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.19 E-value=1.7e-05 Score=77.92 Aligned_cols=146 Identities=23% Similarity=0.227 Sum_probs=76.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH--cC--Cc-eEEeeccccCCh------------------------HHHHHHHHhc-
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY--LN--FD-IYDLELSAVHSN------------------------SELRRVLLST- 294 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~--l~--~~-~~~l~~~~~~~~------------------------~~L~~ll~~~- 294 (455)
.+-+.|+|++|+|||+||..+++. .. ++ ++.++.+...+. ..+.+.+...
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 456899999999999999999977 32 22 233444333211 1122222221
Q ss_pred -CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCc
Q 012846 295 -GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGR 373 (455)
Q Consensus 295 -~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR 373 (455)
.++++|+|||++... .+..+...+-.. ..+.-||.||....- -..+ +.
T Consensus 99 ~~~~~LlVlDdv~~~~-----------------------~~~~l~~~~~~~----~~~~kilvTTR~~~v-~~~~---~~ 147 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE-----------------------DLEELREPLPSF----SSGSKILVTTRDRSV-AGSL---GG 147 (287)
T ss_dssp CCTSEEEEEEEE-SHH-----------------------HH-------HCH----HSS-EEEEEESCGGG-GTTH---HS
T ss_pred ccccceeeeeeecccc-----------------------cccccccccccc----ccccccccccccccc-cccc---cc
Confidence 358999999998542 122222222111 112345556654321 1111 11
Q ss_pred eeeEEEeCCCCHHHHHHHHHHHcCCCC----CCcHHHHHHHhhcCCCCHHHH
Q 012846 374 MDVHIYMSYCTPCGFDTLAANYLGITD----HPLIYEIKEIMQNVRVTPADV 421 (455)
Q Consensus 374 ~d~~I~~~~p~~~~r~~l~~~~l~~~~----~~l~~~i~~l~~~~~~tpa~i 421 (455)
-+..++++..+.++-.+++..+..... ..+.+...++++..+..|--+
T Consensus 148 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal 199 (287)
T PF00931_consen 148 TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLAL 199 (287)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 157899999999999999999876543 223334455555555566443
No 254
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.13 E-value=1.6e-05 Score=90.83 Aligned_cols=128 Identities=23% Similarity=0.279 Sum_probs=92.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHH--------------------HHhcCCceEEEEec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRV--------------------LLSTGNRSILVVED 304 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~l--------------------l~~~~~~sIlliDe 304 (455)
.+++||.|.||+|||+|+.|+|+..|-.++.+++++-. +|..+ +..+..+.-+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQT---DLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccc---hHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 46899999999999999999999999999999988753 23333 33445677889999
Q ss_pred cccccccccccCCCccccccCCCccchhhHhhHhhhhhccc----------cCCCCceEEEEecCCC------CCCCccc
Q 012846 305 IDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW----------SSCGDERIIVFTTNHK------DRLDPAV 368 (455)
Q Consensus 305 iD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~----------~~~~~~~iiI~tTN~~------~~LD~aL 368 (455)
+.- .++..+.+|-.++|.-. -.+..+..|++|-|.- ..||..+
T Consensus 1620 iNL---------------------aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF 1678 (4600)
T COG5271 1620 INL---------------------ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSF 1678 (4600)
T ss_pred hhh---------------------hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHH
Confidence 873 23445666666666321 1233456666666643 3589999
Q ss_pred cCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 369 LRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 369 lrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
+. || ..|.+...+.++...|+...+..-
T Consensus 1679 ~n--RF-svV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1679 LN--RF-SVVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred hh--hh-heEEecccccchHHHHHHhhCCcc
Confidence 98 99 478888888888888887766543
No 255
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.08 E-value=7.4e-06 Score=86.81 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=51.3
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-CCceEEeec
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-NFDIYDLEL 278 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-~~~~~~l~~ 278 (455)
...-|+++.|.++.+++|++.+......- ...++.++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl-------~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGL-------EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhc-------CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 33459999999999999998875544321 2234678999999999999999999977 467887754
No 256
>PHA00729 NTP-binding motif containing protein
Probab=98.07 E-value=5.9e-06 Score=78.39 Aligned_cols=62 Identities=10% Similarity=0.230 Sum_probs=39.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc----------CChHHHHHHHHh----cCCceEEEEecccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV----------HSNSELRRVLLS----TGNRSILVVEDIDC 307 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~----------~~~~~L~~ll~~----~~~~sIlliDeiD~ 307 (455)
..++|+|+||||||+||.+||+.++..+..+..... .+.+++...+.. ..+..+|+|||+-.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~ 93 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGI 93 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCch
Confidence 379999999999999999999988644333221111 122333333322 22346899999753
No 257
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.05 E-value=1.7e-05 Score=77.22 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=61.8
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEe-------eccccCCh
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL-------ELSAVHSN 284 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l-------~~~~~~~~ 284 (455)
.|.|+.-+++.|+..+..++..+. -..|--+-|||+|||||+..++.||+.+-.....- ..-..-.+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 578999999999999999887642 11233456899999999999999999873222111 11111111
Q ss_pred -------HHHHHHHHhc---CCceEEEEeccccccc
Q 012846 285 -------SELRRVLLST---GNRSILVVEDIDCSLE 310 (455)
Q Consensus 285 -------~~L~~ll~~~---~~~sIlliDeiD~l~~ 310 (455)
.+|...+... -+++|.+|||+|.+-+
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 3344444332 3789999999998753
No 258
>PHA02774 E1; Provisional
Probab=98.04 E-value=3.7e-05 Score=81.61 Aligned_cols=58 Identities=24% Similarity=0.430 Sum_probs=43.2
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEE-eeccccCChHHHHHHHHhcCCceEEEEecc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD-LELSAVHSNSELRRVLLSTGNRSILVVEDI 305 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~-l~~~~~~~~~~L~~ll~~~~~~sIlliDei 305 (455)
|.|.+++++||||||||||+++.+|++.++..++. ++... .-.|......-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-------ccccchhccCCEEEEecC
Confidence 56767899999999999999999999999766544 45321 111334445569999999
No 259
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.04 E-value=2.2e-05 Score=82.09 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=59.9
Q ss_pred ccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHHHHH
Q 012846 213 LAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSELRR 289 (455)
Q Consensus 213 l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~L~~ 289 (455)
+++.......+.+.+..+. +....++++|.+||||+++++++.... +.+++.++|+.+. ...+..
T Consensus 141 lig~s~~~~~~~~~i~~~~-----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~-~~~~~~ 208 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA-----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN-ESLLES 208 (441)
T ss_pred eEecCHHHHHHHHHHhhcc-----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC-HHHHHH
Confidence 4555555555555543221 224679999999999999999997654 5789999999874 344555
Q ss_pred HHHh------------------cCCceEEEEeccccccc
Q 012846 290 VLLS------------------TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 290 ll~~------------------~~~~sIlliDeiD~l~~ 310 (455)
.++. ...+++|||||||.+..
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~ 247 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH
Confidence 4432 12468999999998854
No 260
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.99 E-value=5.7e-05 Score=66.86 Aligned_cols=31 Identities=23% Similarity=0.556 Sum_probs=24.7
Q ss_pred eEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
++++||||+|||+++.+++..+ +.+++.++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 6899999999999999998876 445555443
No 261
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.91 E-value=0.00048 Score=70.77 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=54.0
Q ss_pred CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC---------------------CCcHHHHHHHhhcCC--CCH
Q 012846 362 DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD---------------------HPLIYEIKEIMQNVR--VTP 418 (455)
Q Consensus 362 ~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~---------------------~~l~~~i~~l~~~~~--~tp 418 (455)
..|..|| |+|.-..|.++.++++.-+..+...|.... .....++...++..+ +|.
T Consensus 197 k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltD 274 (431)
T PF10443_consen 197 KPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTD 274 (431)
T ss_pred hhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHH
Confidence 4566677 668889999999999999999998886541 134556666666544 444
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHH
Q 012846 419 ADVGEQLL-KNEDPEIALKGLLEF 441 (455)
Q Consensus 419 a~i~~~l~-~~~~~~~al~~l~~~ 441 (455)
-+....-+ ...+|+.|++++++.
T Consensus 275 Le~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 275 LEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 43332223 356999999988865
No 262
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.90 E-value=6.5e-05 Score=77.75 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=68.3
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCCh
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSN 284 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~ 284 (455)
..+..|||......++.+.++.-..+ ...+||.|.+||||..+|++|-... +.|++.+||..+-.+
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 45789999998888888888755433 4579999999999999999997765 679999999998522
Q ss_pred HHHHH-HH-----------------HhcCCceEEEEecccccc
Q 012846 285 SELRR-VL-----------------LSTGNRSILVVEDIDCSL 309 (455)
Q Consensus 285 ~~L~~-ll-----------------~~~~~~sIlliDeiD~l~ 309 (455)
-+.. +| +..+.++-||+|||-.+.
T Consensus 289 -LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP 330 (550)
T COG3604 289 -LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP 330 (550)
T ss_pred -HHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC
Confidence 2221 22 112367899999998664
No 263
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.88 E-value=2.4e-05 Score=72.92 Aligned_cols=114 Identities=15% Similarity=0.235 Sum_probs=58.8
Q ss_pred eEEeCCCCCChHHHHHHH-HHH---cCCceEEeeccccC-----C--h-------------------HHHHHHHHhcCCc
Q 012846 248 YLLYGPPGTGKSSLIAAM-SNY---LNFDIYDLELSAVH-----S--N-------------------SELRRVLLSTGNR 297 (455)
Q Consensus 248 iLL~GppGTGKT~la~ai-A~~---l~~~~~~l~~~~~~-----~--~-------------------~~L~~ll~~~~~~ 297 (455)
++++|.||+|||+.|-.. ... -|.+++. +...+. . . ..+. .....+.+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPD-DWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHH-HHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhh-hhcccCCC
Confidence 689999999999877555 322 2666654 433221 0 0 0111 11222368
Q ss_pred eEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeE
Q 012846 298 SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVH 377 (455)
Q Consensus 298 sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~ 377 (455)
++|+|||+...++.+..... .. ...++.+... ...+.-||++|-++..||+.+++ .++.+
T Consensus 81 ~liviDEa~~~~~~r~~~~~-----------~~----~~~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~--lve~~ 140 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKGK-----------KV----PEIIEFLAQH---RHYGWDIILITQSPSQIDKFIRD--LVEYH 140 (193)
T ss_dssp -EEEETTGGGTSB---T-T-------------------HHHHGGGGC---CCTT-EEEEEES-GGGB-HHHHC--CEEEE
T ss_pred cEEEEECChhhcCCCccccc-----------cc----hHHHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHH--HHheE
Confidence 99999999998874333110 01 1222333222 22347788999999999999987 88999
Q ss_pred EEeCCC
Q 012846 378 IYMSYC 383 (455)
Q Consensus 378 I~~~~p 383 (455)
+++..+
T Consensus 141 ~~~~k~ 146 (193)
T PF05707_consen 141 YHCRKL 146 (193)
T ss_dssp EEEEE-
T ss_pred EEEEee
Confidence 887654
No 264
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.88 E-value=1e-05 Score=68.82 Aligned_cols=31 Identities=32% Similarity=0.724 Sum_probs=27.7
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
|++.||||+||||+++.+|+.++++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776654
No 265
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.85 E-value=7.3e-05 Score=70.18 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=32.5
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSA 280 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~ 280 (455)
|.+.+.-++++||||+|||+++..++... +..++.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67777789999999999999999887543 56777777764
No 266
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.85 E-value=6.3e-05 Score=85.57 Aligned_cols=140 Identities=20% Similarity=0.264 Sum_probs=90.2
Q ss_pred CCCceeEEeCCCCCChHH-HHHHHHHHcCCceEEeeccccCChHHHHHHHHhcC-----------------CceEEEEec
Q 012846 243 AWKRGYLLYGPPGTGKSS-LIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTG-----------------NRSILVVED 304 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~-la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~-----------------~~sIlliDe 304 (455)
...|+|+++||||+|||+ +.-++-+.+-+.+..++.+.-.+.+.....|.+.. ..-|||.||
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDe 1571 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDE 1571 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeec
Confidence 346899999999999997 67889999999999999877655554555554421 125999999
Q ss_pred cccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCC------CceEEEEecCCCCCC-----CccccCCCc
Q 012846 305 IDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCG------DERIIVFTTNHKDRL-----DPAVLRPGR 373 (455)
Q Consensus 305 iD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~------~~~iiI~tTN~~~~L-----D~aLlrpgR 373 (455)
|. +.. .+...+. ..-.-+-.|+ +=.|+|+... .++++.+++|.+.+. ...++| |
T Consensus 1572 In-Lp~--~~~y~~~---------~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r--~ 1636 (3164)
T COG5245 1572 IN-LPY--GFEYYPP---------TVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR--K 1636 (3164)
T ss_pred cC-Ccc--ccccCCC---------ceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--C
Confidence 98 321 1211110 1111111222 1235665432 347888899987653 233443 2
Q ss_pred eeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 374 MDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 374 ~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
...|+..||.-.....|...++..
T Consensus 1637 -~v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1637 -PVFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred -ceEEEecCcchhhHHHHHHHHHHH
Confidence 467889999999999998877743
No 267
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.82 E-value=0.00014 Score=70.87 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=42.6
Q ss_pred eEEEEecCC------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhh
Q 012846 352 RIIVFTTNH------------KDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQ 412 (455)
Q Consensus 352 ~iiI~tTN~------------~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~ 412 (455)
-++|++||+ |.-+|-.|+. |+ ..|...+.+.++.++|++.-+..++..+.++.-.++.
T Consensus 318 PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt 387 (454)
T KOG2680|consen 318 PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLT 387 (454)
T ss_pred cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHH
Confidence 366677775 5667888888 87 5666666677888899998888887777776666553
No 268
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.82 E-value=0.00016 Score=74.45 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=39.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc-CCceEEeeccccCChHHHHHHHHhcCCceEEEEecccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL-NFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCSL 309 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l-~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~ 309 (455)
..++++.||||||||+++.+++.+. -..-..+....+..+-. .+.+.......+|+|||+..+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~-~~~lg~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIS-TRQIGLVGRWDVVAFDEVATLK 273 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHH-HHHHhhhccCCEEEEEcCCCCc
Confidence 4589999999999999999998772 11111112222211111 1333444577899999998753
No 269
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.79 E-value=4.4e-05 Score=65.67 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=42.6
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
..|.|++-+++.|.+.+..++..+. ...|--+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3688999999999999999986641 1223345699999999999999999985
No 270
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.78 E-value=0.00023 Score=75.37 Aligned_cols=163 Identities=17% Similarity=0.262 Sum_probs=98.3
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCC--CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC-----
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAW--KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH----- 282 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~--~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~----- 282 (455)
|-.|.|.+.+|.-|.-.+ +.+-..+..-|.+. -..+|+.|.||||||-+.++.++.+...+|.---+.-.
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 667788888888876443 22211122212222 23489999999999999999999999988864211110
Q ss_pred ---ChHHHHHHHHh-----cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhh---------ccc
Q 012846 283 ---SNSELRRVLLS-----TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD---------GLW 345 (455)
Q Consensus 283 ---~~~~L~~ll~~-----~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD---------g~~ 345 (455)
.+++--+...+ .+..+|..|||+|.+-... + -.++.+|+ |+.
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~d------------------q---vAihEAMEQQtISIaKAGv~ 479 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKD------------------Q---VAIHEAMEQQTISIAKAGVV 479 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccChHh------------------H---HHHHHHHHhheehheecceE
Confidence 01111111111 2367899999999874311 1 22333333 111
Q ss_pred cCCCCceEEEEecCCCC-------------CCCccccCCCceeeE-EEeCCCCHHHHHHHHHHHcCC
Q 012846 346 SSCGDERIIVFTTNHKD-------------RLDPAVLRPGRMDVH-IYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 346 ~~~~~~~iiI~tTN~~~-------------~LD~aLlrpgR~d~~-I~~~~p~~~~r~~l~~~~l~~ 398 (455)
..-...--|++++|... .++++++. |||.. |.+..|++..=..|.++.+..
T Consensus 480 aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 480 ATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred EeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 11111234677777542 46889999 99865 677999998888888877654
No 271
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.78 E-value=1.3e-05 Score=80.96 Aligned_cols=164 Identities=20% Similarity=0.212 Sum_probs=82.8
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccc----c-----C
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA----V-----H 282 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~----~-----~ 282 (455)
+|.|.+.+|+.|.-.+..-...... ........-.+||.|.||||||.|.+.+++.....+|.--.+. + .
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecc
Confidence 4677777777765433211110000 0000111235999999999999999999877776666432111 1 0
Q ss_pred C----hHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc---------ccCCC
Q 012846 283 S----NSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL---------WSSCG 349 (455)
Q Consensus 283 ~----~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~---------~~~~~ 349 (455)
+ +-.+..-..-.+.++|++|||+|.+-. .....|+..|+.- ...-.
T Consensus 104 d~~~~~~~leaGalvlad~GiccIDe~dk~~~---------------------~~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLADGGICCIDEFDKMKE---------------------DDRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp CGGTSSECEEE-HHHHCTTSEEEECTTTT--C---------------------HHHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred ccccceeEEeCCchhcccCceeeecccccccc---------------------hHHHHHHHHHHcCeeccchhhhccccc
Confidence 1 101111112234789999999998743 1134455555421 10001
Q ss_pred CceEEEEecCCCC-------------CCCccccCCCceeeEEEe-CCCCHHHHHHHHHHHcCCC
Q 012846 350 DERIIVFTTNHKD-------------RLDPAVLRPGRMDVHIYM-SYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 350 ~~~iiI~tTN~~~-------------~LD~aLlrpgR~d~~I~~-~~p~~~~r~~l~~~~l~~~ 399 (455)
-..-|++++|... .+++.|+. |||..+.+ ..++.+.=..++++.+...
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 1245788888654 47889999 99988776 5666666666777666543
No 272
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.77 E-value=3.2e-05 Score=73.40 Aligned_cols=64 Identities=22% Similarity=0.396 Sum_probs=39.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccc----------c------CChHHHHHHHHhc----CCceEEEEec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA----------V------HSNSELRRVLLST----GNRSILVVED 304 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~----------~------~~~~~L~~ll~~~----~~~sIlliDe 304 (455)
+.-+|+||+||+|||++|+.+++. .-++..+.+. + ..-+.+.+.+... ....+||||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 345999999999999999999732 2222222211 0 0113344443322 2457999999
Q ss_pred cccccc
Q 012846 305 IDCSLE 310 (455)
Q Consensus 305 iD~l~~ 310 (455)
|+.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 998743
No 273
>PRK07261 topology modulation protein; Provisional
Probab=97.76 E-value=6e-05 Score=68.86 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=27.7
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
+++.|+||+|||++++.|+..++.+++.++.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999999988776653
No 274
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.76 E-value=2.8e-05 Score=70.33 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=30.6
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.+..++|+||||||||++++++|+.++.++++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3568999999999999999999999999988654
No 275
>PF14516 AAA_35: AAA-like domain
Probab=97.75 E-value=0.0009 Score=67.69 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=78.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCC-----hH-------------------------------
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHS-----NS------------------------------- 285 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~-----~~------------------------------- 285 (455)
+.-+.++||..+|||++...+.+.+ ++..+.+++..+.+ ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4567899999999999999887655 77788888777532 01
Q ss_pred -H----HHH-HHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCC-----Cc-eE
Q 012846 286 -E----LRR-VLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCG-----DE-RI 353 (455)
Q Consensus 286 -~----L~~-ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~-----~~-~i 353 (455)
. +.+ ++....+|-||+|||||++++. . .....|+..|-....... .. ++
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~------------------~-~~~~dF~~~LR~~~~~~~~~~~~~~L~l 171 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY------------------P-QIADDFFGLLRSWYEQRKNNPIWQKLRL 171 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccC------------------c-chHHHHHHHHHHHHHhcccCcccceEEE
Confidence 0 111 1122346889999999999751 1 112344444433221111 11 23
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 354 IVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 354 iI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
+++.+..+......--.|--+...|.++.-+.++...|++.|-
T Consensus 172 i~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 172 ILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred EEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 3333222221111113444566789999999999999999874
No 276
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=8.9e-05 Score=75.71 Aligned_cols=103 Identities=21% Similarity=0.321 Sum_probs=62.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc----C-CceEEeecccc----------------------CChHHHHHHHHhcCCc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL----N-FDIYDLELSAV----------------------HSNSELRRVLLSTGNR 297 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l----~-~~~~~l~~~~~----------------------~~~~~L~~ll~~~~~~ 297 (455)
+..++|.||+|+|||+++..||..+ + ..+..+..... .+..++...+......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4568999999999999999999753 2 23433333222 1234555666666778
Q ss_pred eEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccc
Q 012846 298 SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAV 368 (455)
Q Consensus 298 sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aL 368 (455)
.+|+||.+... .....+.+.+..+.+... +-+.++|+-+|+..+.++..+
T Consensus 217 DlVLIDTaG~~--------------------~~d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 217 HMVLIDTIGMS--------------------QRDRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CEEEEcCCCCC--------------------cccHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 89999998633 122335556666654322 122355555777777666443
No 277
>PRK08118 topology modulation protein; Reviewed
Probab=97.69 E-value=7e-05 Score=68.13 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=29.7
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
.|++.||||+|||++|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999988873
No 278
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.68 E-value=0.00024 Score=70.82 Aligned_cols=132 Identities=17% Similarity=0.274 Sum_probs=92.0
Q ss_pred ceeeeecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHH---cCCceE
Q 012846 198 SWHWITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY---LNFDIY 274 (455)
Q Consensus 198 ~~~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~---l~~~~~ 274 (455)
....+...+...|+.+++.....+.+++....+.-- --.+|+.|..||||-.+|+|.-.. -..||+
T Consensus 191 ~~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Aml-----------DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFl 259 (511)
T COG3283 191 QLQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAML-----------DAPLLITGETGTGKDLLAKACHLASPRHSKPFL 259 (511)
T ss_pred HHhhcccccccchHHHhhccHHHHHHHHHHHHhhcc-----------CCCeEEecCCCchHHHHHHHHhhcCcccCCCee
Confidence 344556677788999999988888887776554321 235899999999999999987543 368999
Q ss_pred EeeccccCChHHHHHHH------------HhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhh-
Q 012846 275 DLELSAVHSNSELRRVL------------LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL- 341 (455)
Q Consensus 275 ~l~~~~~~~~~~L~~ll------------~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l- 341 (455)
.++|..+-.+..=.++| ++.++++.+|+|||-.+.+ .....||.++
T Consensus 260 alNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp---------------------~lQaKLLRFL~ 318 (511)
T COG3283 260 ALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP---------------------RLQAKLLRFLN 318 (511)
T ss_pred EeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH---------------------HHHHHHHHHhc
Confidence 99999987544334444 3344678899999986654 2234566665
Q ss_pred hccccCCCC------ceEEEEecCCC
Q 012846 342 DGLWSSCGD------ERIIVFTTNHK 361 (455)
Q Consensus 342 Dg~~~~~~~------~~iiI~tTN~~ 361 (455)
||....-|+ .+-||+||..+
T Consensus 319 DGtFRRVGee~Ev~vdVRVIcatq~n 344 (511)
T COG3283 319 DGTFRRVGEDHEVHVDVRVICATQVN 344 (511)
T ss_pred CCceeecCCcceEEEEEEEEeccccc
Confidence 565444443 36788888764
No 279
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.68 E-value=0.00024 Score=67.17 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=30.1
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
|.+.+.-++++||||+|||+++..+|... +.+++.++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56667779999999999999999998654 456666654
No 280
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.61 E-value=0.00021 Score=65.25 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=46.5
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChH-----------------------HHHHHHHh-cCCceEEEE
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNS-----------------------ELRRVLLS-TGNRSILVV 302 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~-----------------------~L~~ll~~-~~~~sIlli 302 (455)
-+|+.||||+|||++|..++..++.+++.+.......++ +|.+++.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 479999999999999999999998888777765544321 23444444 344668888
Q ss_pred eccccccc
Q 012846 303 EDIDCSLE 310 (455)
Q Consensus 303 DeiD~l~~ 310 (455)
|-+..+..
T Consensus 83 D~Lt~~~~ 90 (170)
T PRK05800 83 DCLTTWVT 90 (170)
T ss_pred hhHHHHHH
Confidence 88877653
No 281
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.61 E-value=0.00023 Score=67.69 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=31.9
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELS 279 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~ 279 (455)
|.+.+.-++++||||+|||+++..+|... +..++.++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 66777778999999999999999998644 6677777766
No 282
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00088 Score=68.97 Aligned_cols=65 Identities=25% Similarity=0.431 Sum_probs=43.6
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcC-------CceEEeecccc--C--------------------ChHHHHHHHHhc
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLN-------FDIYDLELSAV--H--------------------SNSELRRVLLST 294 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~-------~~~~~l~~~~~--~--------------------~~~~L~~ll~~~ 294 (455)
.++.++|+||+|+|||+++.-+|..+. ..+..+++... . +...+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 456789999999999999999997652 33433333222 1 124455555555
Q ss_pred CCceEEEEeccccc
Q 012846 295 GNRSILVVEDIDCS 308 (455)
Q Consensus 295 ~~~sIlliDeiD~l 308 (455)
....+|+||.+..+
T Consensus 253 ~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 KDFDLVLVDTIGKS 266 (388)
T ss_pred CCCCEEEEcCCCCC
Confidence 56679999998755
No 283
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.56 E-value=0.00088 Score=69.44 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=75.0
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCc-eEEeeccccCChHHHHHHH---HhcC--CceEEEEeccccccccccccCCCcc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFD-IYDLELSAVHSNSELRRVL---LSTG--NRSILVVEDIDCSLELEDRQAQPTT 320 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~-~~~l~~~~~~~~~~L~~ll---~~~~--~~sIlliDeiD~l~~~~~~~~~~~~ 320 (455)
.++++||.++|||++++.+...+.-. +|...+.......++.+.+ .... .++.||||||.++-+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~---------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD---------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh----------
Confidence 78999999999999998888877654 3433444433444443333 2222 458999999997632
Q ss_pred ccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCC-CccccCCCceeeEEEeCCCCHHHHHH---------
Q 012846 321 VNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRL-DPAVLRPGRMDVHIYMSYCTPCGFDT--------- 390 (455)
Q Consensus 321 ~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~L-D~aLlrpgR~d~~I~~~~p~~~~r~~--------- 390 (455)
=...+..| .|.- .. -++|.++|..-.+ ..+-.=|||. ..+++.+.+..++..
T Consensus 109 ---------W~~~lk~l---~d~~----~~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~ 170 (398)
T COG1373 109 ---------WERALKYL---YDRG----NL-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPS 170 (398)
T ss_pred ---------HHHHHHHH---Hccc----cc-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchh
Confidence 11112222 2221 11 3455555543222 2222236794 788899999988854
Q ss_pred ----HHHHHcCCC
Q 012846 391 ----LAANYLGIT 399 (455)
Q Consensus 391 ----l~~~~l~~~ 399 (455)
++..|+...
T Consensus 171 ~~~~~f~~Yl~~G 183 (398)
T COG1373 171 KLELLFEKYLETG 183 (398)
T ss_pred HHHHHHHHHHHhC
Confidence 677777654
No 284
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.55 E-value=0.00044 Score=64.71 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=63.9
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCcc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTT 320 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~ 320 (455)
|......++|.|+.|+|||++++.|+.. +|.-+.....+.+. ...+...-|+.|||++.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~kd~----~~~l~~~~iveldEl~~~~k---------- 109 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDDKDF----LEQLQGKWIVELDELDGLSK---------- 109 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCCCcHH----HHHHHHhHheeHHHHhhcch----------
Confidence 4444456789999999999999999766 22212222222222 22334557899999997642
Q ss_pred ccccCCCccchhhHhhHhhhh-hccc-------cCCCCceEEEEecCCCCCC-CccccCCCceeeEEEeCC
Q 012846 321 VNVLKPLRPMQVTLSGLLNFL-DGLW-------SSCGDERIIVFTTNHKDRL-DPAVLRPGRMDVHIYMSY 382 (455)
Q Consensus 321 ~~~~~~~~~~~~~ls~LL~~l-Dg~~-------~~~~~~~iiI~tTN~~~~L-D~aLlrpgR~d~~I~~~~ 382 (455)
.....+..++..- |.+. .......++|+|||..+-| |+.=-| || ..|+++.
T Consensus 110 --------~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 110 --------KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred --------hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 1112233333221 1111 0111235788999998755 566667 87 4555554
No 285
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.54 E-value=0.00059 Score=62.50 Aligned_cols=30 Identities=27% Similarity=0.226 Sum_probs=23.0
Q ss_pred eEEeCCCCCChHHHHHHHHHHc---CCceEEee
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL---NFDIYDLE 277 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l---~~~~~~l~ 277 (455)
+|++||||||||+++..++... |.++..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 7899999999999999886543 45555443
No 286
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.53 E-value=0.00022 Score=71.43 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=44.8
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC---------------------ChHHHHHHH---Hh
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH---------------------SNSELRRVL---LS 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~---------------------~~~~L~~ll---~~ 293 (455)
|.|..+.++++||||||||+|+..++... +..+..++..... +.++...++ ..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777779999999999999987765433 4555555433211 111122222 22
Q ss_pred cCCceEEEEeccccccc
Q 012846 294 TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 294 ~~~~sIlliDeiD~l~~ 310 (455)
.....+||||-+-++.+
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 24678999999998875
No 287
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.52 E-value=0.00036 Score=66.84 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
|.|.+..++++||||||||+++.+++... +..++.++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67778889999999999999999996542 555555443
No 288
>PRK13947 shikimate kinase; Provisional
Probab=97.51 E-value=9.5e-05 Score=67.02 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=29.6
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
.++|.|+||+|||++++.+|+.+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999988763
No 289
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.50 E-value=9.7e-05 Score=65.48 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=28.5
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.|+|+||||+|||++++.+|..++.++++.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999988765
No 290
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.00017 Score=78.34 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=42.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeeccc----cC---ChHHH-HHHHHh-----cCCceEEEEecccccc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA----VH---SNSEL-RRVLLS-----TGNRSILVVEDIDCSL 309 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~----~~---~~~~L-~~ll~~-----~~~~sIlliDeiD~l~ 309 (455)
.+||.|.||||||.|.+.+++.+...+|.---+. +. ..+.. -+.... .+.++|++|||+|.+-
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~ 396 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN 396 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC
Confidence 4899999999999999999999988887531111 10 00111 111111 2368999999999864
No 291
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.49 E-value=0.0036 Score=71.49 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=85.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCCh--------------------------------H----HHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN--------------------------------S----ELR 288 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~--------------------------------~----~L~ 288 (455)
.+-++++||+|.|||+++...+...+ ++..+++..-.++ . -+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 35689999999999999999887776 6665554322110 0 011
Q ss_pred HHHHh---cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCC
Q 012846 289 RVLLS---TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLD 365 (455)
Q Consensus 289 ~ll~~---~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD 365 (455)
.++.. ...|.+|||||++.+-+. .....+..|+.. . +.++.+|+|+.....++
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~~-----------------~~~~~l~~l~~~---~----~~~~~lv~~sR~~~~~~ 166 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITNP-----------------EIHEAMRFFLRH---Q----PENLTLVVLSRNLPPLG 166 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCCh-----------------HHHHHHHHHHHh---C----CCCeEEEEEeCCCCCCc
Confidence 22222 246899999999976320 111123333332 2 23344545664422222
Q ss_pred c-cccCCCceeeEEEeC----CCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcCCCCHHHHHHHHH
Q 012846 366 P-AVLRPGRMDVHIYMS----YCTPCGFDTLAANYLGITDHPLIYEIKEIMQNVRVTPADVGEQLL 426 (455)
Q Consensus 366 ~-aLlrpgR~d~~I~~~----~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~ 426 (455)
- .+... +..+++. ..+.++-..++...++.. ...+++..+.+.++..|.-+..++.
T Consensus 167 ~~~l~~~---~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 167 IANLRVR---DQLLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred hHhHHhc---CcceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHHHHHHHHH
Confidence 1 11111 2234444 668888888887666543 2345677788877788877765443
No 292
>PRK03839 putative kinase; Provisional
Probab=97.49 E-value=9e-05 Score=67.94 Aligned_cols=30 Identities=27% Similarity=0.587 Sum_probs=27.8
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
++|.|+||+|||++++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999987754
No 293
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.48 E-value=0.00045 Score=65.51 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---C------CceEEeeccc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---N------FDIYDLELSA 280 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~------~~~~~l~~~~ 280 (455)
|.+.+.-+.|+||||+|||+++..+|... + ..++.++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 66777779999999999999999997653 2 4555565543
No 294
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.48 E-value=0.00095 Score=66.21 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=94.9
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHH---HHHcCCceEEeeccccC-C----
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAM---SNYLNFDIYDLELSAVH-S---- 283 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~ai---A~~l~~~~~~l~~~~~~-~---- 283 (455)
.+.|..+..+.|.+.++.-.-..+ ...+++.||.|+|||.++... +.+.|-+++.+-+.... +
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 456666777777777765543322 457999999999999876654 33677777766544321 1
Q ss_pred ----------------------hHHHHHHHHhcC-------CceEEEEeccccccccccccCCCccccccCCCccchhhH
Q 012846 284 ----------------------NSELRRVLLSTG-------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTL 334 (455)
Q Consensus 284 ----------------------~~~L~~ll~~~~-------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~l 334 (455)
.+.+..++.... .+.|.++||+|-..+ ..+.+
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~------------------h~rQt- 156 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP------------------HSRQT- 156 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc------------------chhhH-
Confidence 122333332221 235667789997764 22222
Q ss_pred hhHhhhhhccccCCCCceEEEEecCCCC---CCCccccCCCcee-eEEEe-CCCCHHHHHHHHHHHcCCC
Q 012846 335 SGLLNFLDGLWSSCGDERIIVFTTNHKD---RLDPAVLRPGRMD-VHIYM-SYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 335 s~LL~~lDg~~~~~~~~~iiI~tTN~~~---~LD~aLlrpgR~d-~~I~~-~~p~~~~r~~l~~~~l~~~ 399 (455)
-|-|.+|-..+. .-.+.||+.|.+.+ .|...+.. ||. +.|+| |..+.++...++++.+...
T Consensus 157 -llYnlfDisqs~-r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v~ 222 (408)
T KOG2228|consen 157 -LLYNLFDISQSA-RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSVP 222 (408)
T ss_pred -HHHHHHHHHhhc-CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcCC
Confidence 244666654332 23477777666654 34566666 884 44776 4445689999999988543
No 295
>PRK00625 shikimate kinase; Provisional
Probab=97.47 E-value=0.0001 Score=67.49 Aligned_cols=31 Identities=29% Similarity=0.600 Sum_probs=29.2
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.++|.|+||+|||++++.+|+.++++++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999999876
No 296
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.47 E-value=0.00029 Score=70.30 Aligned_cols=98 Identities=21% Similarity=0.267 Sum_probs=57.5
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcCCce-EEeeccccC--ChHHHHHH----------HHhc-CCceEEEEeccccc
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDI-YDLELSAVH--SNSELRRV----------LLST-GNRSILVVEDIDCS 308 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~~~~-~~l~~~~~~--~~~~L~~l----------l~~~-~~~sIlliDeiD~l 308 (455)
..++|+.||||-|.|||.|.......+..+- ..+-.-.++ .-.++..+ -... .+--||+|||+.-.
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~Vt 142 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVT 142 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeec
Confidence 4568999999999999999998887775432 111111110 00111111 1111 23459999999732
Q ss_pred cccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCC-CCCC
Q 012846 309 LELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNH-KDRL 364 (455)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~-~~~L 364 (455)
- - .....++.|++.|=. .++++|+|+|. |+.|
T Consensus 143 D----I--------------~DAMiL~rL~~~Lf~------~GV~lvaTSN~~P~~L 175 (367)
T COG1485 143 D----I--------------ADAMILGRLLEALFA------RGVVLVATSNTAPDNL 175 (367)
T ss_pred C----h--------------HHHHHHHHHHHHHHH------CCcEEEEeCCCChHHh
Confidence 1 0 234567777776632 35899999995 4444
No 297
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.0007 Score=60.51 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=22.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
..-+.+.||||+|||+++.-+|+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 34689999999999999999998773
No 298
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.46 E-value=0.00057 Score=64.71 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.8
Q ss_pred ceeEEeCCCCCChHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMS 266 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA 266 (455)
+.++|.||.|+|||++.+.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 679999999999999999998
No 299
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.45 E-value=7e-05 Score=65.53 Aligned_cols=27 Identities=37% Similarity=0.688 Sum_probs=23.8
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceE
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIY 274 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~ 274 (455)
+++.||||+|||++|+.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 689999999999999999999994443
No 300
>PRK13949 shikimate kinase; Provisional
Probab=97.44 E-value=0.00012 Score=66.68 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=29.2
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.++|.||||+|||++++.+|+.+++++++++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999998876
No 301
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.43 E-value=0.00034 Score=64.84 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
.++-+.|.||||+|||+|++.+.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356789999999999999999988763
No 302
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.42 E-value=0.00058 Score=68.61 Aligned_cols=65 Identities=28% Similarity=0.374 Sum_probs=49.5
Q ss_pred cc-cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-CCceEEeecccc
Q 012846 210 FD-TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-NFDIYDLELSAV 281 (455)
Q Consensus 210 f~-~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-~~~~~~l~~~~~ 281 (455)
|+ ++.|.++...+|++.+.....+ +-.-++-++|.||+|+|||++++.+-+.+ .+++|.+..+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g-------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQG-------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhc-------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 55 8999999999998877655432 22346789999999999999999998877 457777744433
No 303
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.41 E-value=0.0006 Score=68.39 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=46.0
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHH---cCCceEEeeccccC---------------------ChHHHHHHHH---h
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNY---LNFDIYDLELSAVH---------------------SNSELRRVLL---S 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~---l~~~~~~l~~~~~~---------------------~~~~L~~ll~---~ 293 (455)
|.|..+-+++|||||||||+|+..++.. .+.....++...-. +.+++..++. .
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 5676777899999999999999987643 35556655543211 1122222222 2
Q ss_pred cCCceEEEEeccccccc
Q 012846 294 TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 294 ~~~~sIlliDeiD~l~~ 310 (455)
.....+||||-+-++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 24678999999998875
No 304
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.41 E-value=0.0019 Score=60.34 Aligned_cols=64 Identities=23% Similarity=0.435 Sum_probs=39.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCCh----------HHHHHHHHhc-----------CCceEE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSN----------SELRRVLLST-----------GNRSIL 300 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~----------~~L~~ll~~~-----------~~~sIl 300 (455)
.+..++.||||||||+++++++..+ +..++.+..+.-... ..+..++... ....+|
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence 3567889999999999999987654 567777665543211 1222332221 234799
Q ss_pred EEeccccc
Q 012846 301 VVEDIDCS 308 (455)
Q Consensus 301 liDeiD~l 308 (455)
+|||+-.+
T Consensus 98 iVDEasmv 105 (196)
T PF13604_consen 98 IVDEASMV 105 (196)
T ss_dssp EESSGGG-
T ss_pred EEeccccc
Confidence 99999754
No 305
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00015 Score=63.81 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=28.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
...||+.|-||||||+++..+|..++++.+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 45799999999999999999999999987755
No 306
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.39 E-value=9.4e-05 Score=67.40 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=35.6
Q ss_pred ccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc---eEEeecccc
Q 012846 213 LAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD---IYDLELSAV 281 (455)
Q Consensus 213 l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~---~~~l~~~~~ 281 (455)
++|.++..+++...+. ... ...++.++|+||+|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~---------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ---------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS---------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH---------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4676667776666553 111 1225789999999999999999998766443 777776665
No 307
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.38 E-value=0.001 Score=65.75 Aligned_cols=61 Identities=18% Similarity=0.347 Sum_probs=40.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc----C-CceEEeeccccC----------------------ChHHHHHHHHhcCCc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL----N-FDIYDLELSAVH----------------------SNSELRRVLLSTGNR 297 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l----~-~~~~~l~~~~~~----------------------~~~~L~~ll~~~~~~ 297 (455)
++.++|.||+|+|||+++..+|.++ + ..+..+++.... +..++.+.+......
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~ 273 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDK 273 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCC
Confidence 4468899999999999999998765 3 555555544321 233455555555556
Q ss_pred eEEEEecc
Q 012846 298 SILVVEDI 305 (455)
Q Consensus 298 sIlliDei 305 (455)
.+||||..
T Consensus 274 d~vliDt~ 281 (282)
T TIGR03499 274 DLILIDTA 281 (282)
T ss_pred CEEEEeCC
Confidence 67777753
No 308
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00014 Score=66.10 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=30.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+.+.|.|++|+||||+.+++|+.|+++|++.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46899999999999999999999999999886
No 309
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0035 Score=59.96 Aligned_cols=126 Identities=10% Similarity=0.067 Sum_probs=92.9
Q ss_pred CceeEEeCCCC-CChHHHHHHHHHHcC---------CceEEeeccc-------cCChHHHHHHHHhcC------CceEEE
Q 012846 245 KRGYLLYGPPG-TGKSSLIAAMSNYLN---------FDIYDLELSA-------VHSNSELRRVLLSTG------NRSILV 301 (455)
Q Consensus 245 ~rgiLL~GppG-TGKT~la~aiA~~l~---------~~~~~l~~~~-------~~~~~~L~~ll~~~~------~~sIll 301 (455)
...||+.|..+ +||..++.-++..+. -+++.+.... ...-+++|++..... ..-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 46899999998 999999888776552 3566665332 224466776654432 456999
Q ss_pred EeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeC
Q 012846 302 VEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMS 381 (455)
Q Consensus 302 iDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~ 381 (455)
|+++|.+-. ...+.||..++. ++...++|++|+.++.|.|.+++ |+ .++.++
T Consensus 95 I~~ae~mt~---------------------~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~ 146 (263)
T PRK06581 95 IYSAELMNL---------------------NAANSCLKILED----APKNSYIFLITSRAASIISTIRS--RC-FKINVR 146 (263)
T ss_pred EechHHhCH---------------------HHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCC
Confidence 999998743 234788888876 34568888999999999999998 87 688899
Q ss_pred CCCHHHHHHHHHHHcCC
Q 012846 382 YCTPCGFDTLAANYLGI 398 (455)
Q Consensus 382 ~p~~~~r~~l~~~~l~~ 398 (455)
.|....-.+++..++..
T Consensus 147 ~p~~~~~~e~~~~~~~p 163 (263)
T PRK06581 147 SSILHAYNELYSQFIQP 163 (263)
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99998877777766543
No 310
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.37 E-value=0.0013 Score=60.05 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=45.0
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCCh-----------------------HHHHHHHHhcCCceEEEEec
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN-----------------------SELRRVLLSTGNRSILVVED 304 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~-----------------------~~L~~ll~~~~~~sIlliDe 304 (455)
+|+.||||+|||++|..++...+.+++.+....-.+. .+|.+.+...+.+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 6899999999999999999887777777765543221 23444444333566899998
Q ss_pred cccccc
Q 012846 305 IDCSLE 310 (455)
Q Consensus 305 iD~l~~ 310 (455)
+.....
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 887654
No 311
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.36 E-value=0.0013 Score=67.17 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=21.1
Q ss_pred eEEeCCCCCChHHHHHHHHHHcC
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~ 270 (455)
.|++||||+|||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 78999999999999999998764
No 312
>PTZ00202 tuzin; Provisional
Probab=97.34 E-value=0.013 Score=60.84 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=54.2
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChH
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNS 285 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~ 285 (455)
-|+.-.+.+|.+....++...+.. .....++-+.|.||+|+|||++++.++..++...+.+++.. ..+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg--~eE 324 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG--TED 324 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC--HHH
Confidence 345567888988888777665532 12223457789999999999999999999998888888772 334
Q ss_pred HHHHHHHh
Q 012846 286 ELRRVLLS 293 (455)
Q Consensus 286 ~L~~ll~~ 293 (455)
-++.++..
T Consensus 325 lLr~LL~A 332 (550)
T PTZ00202 325 TLRSVVKA 332 (550)
T ss_pred HHHHHHHH
Confidence 44444433
No 313
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.33 E-value=0.00019 Score=65.73 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=24.8
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
+++.||||+|||++++.||..+++..+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999999999865544
No 314
>PRK06217 hypothetical protein; Validated
Probab=97.32 E-value=0.00021 Score=65.85 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=28.4
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
-|+|.|+||+|||+++++|++.++.++++++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987765
No 315
>PRK13948 shikimate kinase; Provisional
Probab=97.32 E-value=0.00026 Score=65.36 Aligned_cols=34 Identities=29% Similarity=0.181 Sum_probs=31.6
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.++.++|.|++|+|||++++.+|+.++.++++.|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4578999999999999999999999999999877
No 316
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.32 E-value=0.00048 Score=75.10 Aligned_cols=51 Identities=27% Similarity=0.402 Sum_probs=41.5
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
+|..|++++|.++.++.|...+. . ++.++|+||||||||+++++++..+..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~----~-----------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAK----Q-----------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHH----h-----------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 46789999999988887655442 1 247999999999999999999998763
No 317
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.31 E-value=0.00061 Score=71.65 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=47.1
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC--------------------ChHHHHHHHHhc--C
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH--------------------SNSELRRVLLST--G 295 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~--------------------~~~~L~~ll~~~--~ 295 (455)
|.+...-+||+||||+|||+|+..+|... +..++.++..+-. .+..+.+++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56666778999999999999999998755 5666666543311 011222333222 3
Q ss_pred CceEEEEeccccccc
Q 012846 296 NRSILVVEDIDCSLE 310 (455)
Q Consensus 296 ~~sIlliDeiD~l~~ 310 (455)
++.+|+||.|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 678999999988754
No 318
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.30 E-value=0.00021 Score=63.26 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=25.0
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
++|.||||+|||++++.++..++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 319
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=97.29 E-value=0.015 Score=53.68 Aligned_cols=138 Identities=11% Similarity=0.145 Sum_probs=91.0
Q ss_pred eEEEEecCCCCcchHHHHHHHHHhccCCC-CCCCceEeecCC----------------------CCCceEEeccCCCeEE
Q 012846 52 ITLIIDQFDGLASNQIYRAADIYLGNKIS-PSTKMFRVSMPE----------------------KENKMSISMAKNQEIV 108 (455)
Q Consensus 52 ~ti~i~e~~~~~~n~~y~a~~~YL~t~~~-~~~~rl~~~~~~----------------------~~~~~~~~~~~~~~~~ 108 (455)
.|+.|+. .+++|+.+-.+|+.... ..++++.+.... +...+.+.+..| ...
T Consensus 27 ~sv~I~~-----~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h~ 100 (187)
T PF08740_consen 27 SSVEIPS-----DDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-THW 100 (187)
T ss_pred EEEEECC-----CCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CEE
Confidence 4556664 45899999999998754 445666665522 356788899999 888
Q ss_pred EeecCeeEEEEEEEeeccccccccccCccCCCCCcceEEEEEecCcchhhHHHhhhHHHHHhhhHHHhcCceeEEEeccc
Q 012846 109 DHFDGVKLKWKQVTRQVESTQYVSYTGQSTKMQSEIRYFNLTFHKQHKDKVLNSYFPYILRKSKSAQEENKTLKLYSLNQ 188 (455)
Q Consensus 109 d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~~~~~~~ 188 (455)
..|+| +|..+.+..+.. ..+. ..+.+.+.++|+.-.+..+ +|..+|.+..+... +.......+|....
T Consensus 101 F~y~G---~~~~~~R~~~~~-~~~~-----~~~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~~--~~~~~~t~Iy~~~~ 168 (187)
T PF08740_consen 101 FWYKG---RWFWFSRQRESN-SYNS-----WTGAPDETLTLSCLGRSPK-PLKDLLEEAREYYL--KKQKGKTTIYRADG 168 (187)
T ss_pred EEECC---EEEEEEEEeccc-cccc-----cCCCCceEEEEEEecCCHH-HHHHHHHHHHHHHH--HhcCCcEEEEeCCC
Confidence 89999 688888876443 2210 1134578899999887653 66666655544432 23333455888753
Q ss_pred ccccccCCCceeeeecCCCCCcccc
Q 012846 189 DHARRFGLDSWHWITFNHPATFDTL 213 (455)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~f~~l 213 (455)
. +..|..+.-.+++++++|
T Consensus 169 ~------~~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 169 S------EYRWRRVASRPKRPLSTV 187 (187)
T ss_pred C------CCCCcCCCCcCCCCCCCC
Confidence 2 115988777777888875
No 320
>PRK14531 adenylate kinase; Provisional
Probab=97.28 E-value=0.00028 Score=65.08 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=27.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+-++++||||+|||++++.+|..+|++.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4599999999999999999999998876543
No 321
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.27 E-value=0.0026 Score=66.54 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecccc
Q 012846 218 ELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAV 281 (455)
Q Consensus 218 ~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~ 281 (455)
...+.+.+.+...+.......... ..|..++++||||+|||+++..+|..+ +..+..+++...
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 344555555554443321111111 235678999999999999999999877 455555555443
No 322
>PRK14532 adenylate kinase; Provisional
Probab=97.27 E-value=0.00024 Score=65.51 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=26.5
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
.++|.||||+|||++++.||+.+++..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999998776644
No 323
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.26 E-value=0.00026 Score=62.02 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=28.2
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+.+.|+||+|||++++.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999998877
No 324
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.24 E-value=0.0009 Score=65.31 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=31.0
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHH---cCCceEEeecc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNY---LNFDIYDLELS 279 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~---l~~~~~~l~~~ 279 (455)
|.+.+..++++||||||||+++..+|.. .+.++..++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 6677777999999999999999988653 25677777765
No 325
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.23 E-value=0.00026 Score=63.66 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=24.6
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
|+|.||||+|||++++.+++.++..+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866653
No 326
>PRK13946 shikimate kinase; Provisional
Probab=97.22 E-value=0.00031 Score=64.79 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=31.2
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
++.|+|.|+||+|||++++.+|+.+++++++.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 5679999999999999999999999999998773
No 327
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.22 E-value=0.00029 Score=64.96 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=26.0
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+++.||||+|||++++.||..+++..+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998776654
No 328
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.22 E-value=0.00072 Score=67.71 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 215 MEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 215 g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
..++.++.+.+.++..+.... -...+..+.|.|+||+|||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 345566666666665443321 1344567999999999999999999999999999655
No 329
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.21 E-value=0.00036 Score=63.74 Aligned_cols=34 Identities=38% Similarity=0.686 Sum_probs=30.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
+..++|.||+|+|||++++.+|+.+++++++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3569999999999999999999999999987764
No 330
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.21 E-value=0.0018 Score=61.97 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=25.9
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEee
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLE 277 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~ 277 (455)
|.+...-+++.||||||||+++..++..+ +..+..++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 46666779999999999999975554332 44444443
No 331
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.20 E-value=0.001 Score=63.25 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=29.8
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc----CCceEEeeccc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL----NFDIYDLELSA 280 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l----~~~~~~l~~~~ 280 (455)
|.|.+..+|+.||||||||+|+..++... +.+++.++...
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 77778889999999999999998875322 67777776543
No 332
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.20 E-value=0.0016 Score=60.96 Aligned_cols=64 Identities=16% Similarity=0.318 Sum_probs=42.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH-----cCCceE-------------Eeeccc-cC--------ChHHHHHHHHhcC--
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY-----LNFDIY-------------DLELSA-VH--------SNSELRRVLLSTG-- 295 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~-----l~~~~~-------------~l~~~~-~~--------~~~~L~~ll~~~~-- 295 (455)
++.++|.||+|+|||++.+.|+.. .|.++- .+...+ +. .-.++.+++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 357899999999999999999843 344321 110000 00 0144667777777
Q ss_pred CceEEEEeccccc
Q 012846 296 NRSILVVEDIDCS 308 (455)
Q Consensus 296 ~~sIlliDeiD~l 308 (455)
.|.+|++||.-.-
T Consensus 105 ~p~llllDEp~~g 117 (199)
T cd03283 105 EPVLFLLDEIFKG 117 (199)
T ss_pred CCeEEEEecccCC
Confidence 8999999997543
No 333
>PRK13808 adenylate kinase; Provisional
Probab=97.19 E-value=0.0062 Score=61.33 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=25.6
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
|+|+||||+|||+++..||..+++..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 88999999999999999999998755543
No 334
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.18 E-value=0.0019 Score=64.82 Aligned_cols=137 Identities=22% Similarity=0.266 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcCCceEE
Q 012846 221 KMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSIL 300 (455)
Q Consensus 221 ~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIl 300 (455)
+.|.+.++.... .+|.+|.+||-||-.||||++|+|+-+.++-....+++..- .|.=-|--+-..-.+
T Consensus 139 ~~i~~iL~~lv~--------N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~d----kl~FELG~AiDQfmV 206 (417)
T PF06431_consen 139 DVILEILKCLVE--------NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD----KLNFELGCAIDQFMV 206 (417)
T ss_dssp HHHHHHHHHHHH--------TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-TT----THHHHHCCCTT-SEE
T ss_pred HHHHHHHHHHhc--------CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCChh----hcchhhheeeceEEE
Confidence 345555554444 46888999999999999999999999999988887776542 222222222356788
Q ss_pred EEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCC-----CCce-----EEEEecCCCCCCCccccC
Q 012846 301 VVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSC-----GDER-----IIVFTTNHKDRLDPAVLR 370 (455)
Q Consensus 301 liDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~-----~~~~-----iiI~tTN~~~~LD~aLlr 370 (455)
+|||+---.. .+..-.++ ..-..|..|-..|||...-. -.++ --|.|.|+ -.||..+.-
T Consensus 207 vFEDVKGq~~-~~~~Lp~G---------~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNe-Y~iP~Tv~v 275 (417)
T PF06431_consen 207 VFEDVKGQPS-DNKDLPPG---------QGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNE-YKIPQTVKV 275 (417)
T ss_dssp EEEEE--SST-TTTT-------------SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT
T ss_pred EEEecCCCcC-CCCCCCCC---------CCcccchhhhhhccCceeechhhhhcccccccCCCceEeecc-ccCCcceee
Confidence 9999853211 01100010 22234566677788753210 0011 24678886 457888877
Q ss_pred CCceeeEEEeCC
Q 012846 371 PGRMDVHIYMSY 382 (455)
Q Consensus 371 pgR~d~~I~~~~ 382 (455)
||...+.|..
T Consensus 276 --Rf~~~~~F~~ 285 (417)
T PF06431_consen 276 --RFCKVLDFRP 285 (417)
T ss_dssp --TEEEEEE---
T ss_pred --eeEeeEeccc
Confidence 9988888765
No 335
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.16 E-value=0.0012 Score=63.08 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=38.7
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---------CCceEEeeccccCChHHHHHHHHh
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---------NFDIYDLELSAVHSNSELRRVLLS 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---------~~~~~~l~~~~~~~~~~L~~ll~~ 293 (455)
|.+.+.-+.|+||||+|||+++..+|... +..++.++...-.....+.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~ 76 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAER 76 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHH
Confidence 56667778999999999999999997542 256777776654445666666544
No 336
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.14 E-value=0.001 Score=65.09 Aligned_cols=90 Identities=21% Similarity=0.406 Sum_probs=56.1
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc---eEEeec-ccc
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD---IYDLEL-SAV 281 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~---~~~l~~-~~~ 281 (455)
.+.+++++.......+.+.+.+...... +..+++.||+|+|||++..++..++... ++.++- .++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~-----------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRG-----------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHT-----------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhcccc-----------ceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4447889887766666665555433222 4679999999999999999999887544 343321 111
Q ss_pred -------------CChHHHHHHHHhc--CCceEEEEeccc
Q 012846 282 -------------HSNSELRRVLLST--GNRSILVVEDID 306 (455)
Q Consensus 282 -------------~~~~~L~~ll~~~--~~~sIlliDeiD 306 (455)
.....+.+++..+ ..|.+|++.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1223455555544 378999999995
No 337
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.14 E-value=0.00047 Score=62.52 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=29.2
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
.++|.|+||+|||++++.+|..+++++++.+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 58899999999999999999999999997753
No 338
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.13 E-value=0.001 Score=64.78 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=53.5
Q ss_pred CceeEEeCCCCCChHHHHHHHH------HHcCCceEEeeccccCChHHHHHHHHhc-----------------CCceEEE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMS------NYLNFDIYDLELSAVHSNSELRRVLLST-----------------GNRSILV 301 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA------~~l~~~~~~l~~~~~~~~~~L~~ll~~~-----------------~~~sIll 301 (455)
+..+||.||.|.|||.|++-|. +.+.-+++.++|..+..+..+..+|-.. ...++||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 4569999999999999999985 3567899999999998887777776332 2568999
Q ss_pred Eecccccc
Q 012846 302 VEDIDCSL 309 (455)
Q Consensus 302 iDeiD~l~ 309 (455)
+|||..+.
T Consensus 288 ldeigelg 295 (531)
T COG4650 288 LDEIGELG 295 (531)
T ss_pred hHhhhhcC
Confidence 99998765
No 339
>PRK14530 adenylate kinase; Provisional
Probab=97.11 E-value=0.00049 Score=65.10 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=27.0
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
.++|.||||+|||++++.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999877744
No 340
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.11 E-value=0.00047 Score=64.88 Aligned_cols=22 Identities=45% Similarity=0.827 Sum_probs=17.7
Q ss_pred eEEeCCCCCChHHHHHHHHHHc
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l 269 (455)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998777776665
No 341
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.11 E-value=0.0066 Score=63.45 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=40.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc-----CCceEEeeccccC----------------------ChHHHHHHHHhcCCc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLELSAVH----------------------SNSELRRVLLSTGNR 297 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~~~~~~----------------------~~~~L~~ll~~~~~~ 297 (455)
++.++|.||+|+|||+++..||..+ +..+..+++.... +..++...+......
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 4568999999999999999987654 3455555543321 223444555555556
Q ss_pred eEEEEeccc
Q 012846 298 SILVVEDID 306 (455)
Q Consensus 298 sIlliDeiD 306 (455)
.+|+||..-
T Consensus 301 DlVlIDt~G 309 (424)
T PRK05703 301 DVILIDTAG 309 (424)
T ss_pred CEEEEeCCC
Confidence 788888764
No 342
>PRK06762 hypothetical protein; Provisional
Probab=97.10 E-value=0.00059 Score=61.54 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=27.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+.-++++|+||+|||++|+.+++.++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 356889999999999999999999966565554
No 343
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00081 Score=60.16 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=41.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCc--eEEeecccc-----------------CChHHHHHHHHh---cCCceEEEE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFD--IYDLELSAV-----------------HSNSELRRVLLS---TGNRSILVV 302 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~--~~~l~~~~~-----------------~~~~~L~~ll~~---~~~~sIlli 302 (455)
..-+.|.||+|+|||+|+++|+..+... -+.++...+ .+..+.+++... +.+|.++++
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4568999999999999999999876422 112221111 122333333222 247899999
Q ss_pred eccccccc
Q 012846 303 EDIDCSLE 310 (455)
Q Consensus 303 DeiD~l~~ 310 (455)
||...-++
T Consensus 105 DEp~~~lD 112 (157)
T cd00267 105 DEPTSGLD 112 (157)
T ss_pred eCCCcCCC
Confidence 99986554
No 344
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.08 E-value=0.0033 Score=64.52 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=45.8
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC--------------------ChHHHHHHHHh--cC
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH--------------------SNSELRRVLLS--TG 295 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~--------------------~~~~L~~ll~~--~~ 295 (455)
|.+.+.-+||+||||+|||+|+..+|..+ +.+++.++..+-. .+..+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56666678999999999999999998654 3456655433211 11122223222 23
Q ss_pred CceEEEEeccccccc
Q 012846 296 NRSILVVEDIDCSLE 310 (455)
Q Consensus 296 ~~sIlliDeiD~l~~ 310 (455)
++.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 789999999988753
No 345
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.08 E-value=0.0051 Score=62.72 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.1
Q ss_pred eEEeCCCCCChHHHHHHHHHHcC
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~ 270 (455)
.|+.||||||||+|++.+|+.+.
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998773
No 346
>PF13245 AAA_19: Part of AAA domain
Probab=97.07 E-value=0.00088 Score=52.69 Aligned_cols=33 Identities=33% Similarity=0.606 Sum_probs=22.2
Q ss_pred eeEEeCCCCCChH-HHHHHHHHHc------CCceEEeecc
Q 012846 247 GYLLYGPPGTGKS-SLIAAMSNYL------NFDIYDLELS 279 (455)
Q Consensus 247 giLL~GppGTGKT-~la~aiA~~l------~~~~~~l~~~ 279 (455)
-+++.|||||||| ++++.++..+ +..+..+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3556999999999 5556666555 4455655544
No 347
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.07 E-value=0.002 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=19.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
++++++||+|+|||.++.+.+..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999998888776554
No 348
>PRK05973 replicative DNA helicase; Provisional
Probab=97.05 E-value=0.0034 Score=60.30 Aligned_cols=37 Identities=19% Similarity=-0.030 Sum_probs=28.0
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEee
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLE 277 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~ 277 (455)
|.+.+.-+++.|+||+|||+++-.++... |.+++.++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 56666779999999999999988876543 65555444
No 349
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.04 E-value=0.00051 Score=62.73 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=27.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+-++|.||||+|||+++++++..++.+++.++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 46899999999999999999999887766443
No 350
>PRK06547 hypothetical protein; Provisional
Probab=97.04 E-value=0.0007 Score=61.91 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=28.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+.-|++.||+|+|||++++.+++.++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 557889999999999999999999988877654
No 351
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.04 E-value=0.0041 Score=59.77 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=36.8
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHH---cCCceEEeeccccCChHHHHHHHHh
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNY---LNFDIYDLELSAVHSNSELRRVLLS 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~---l~~~~~~l~~~~~~~~~~L~~ll~~ 293 (455)
|.+.+..+|++||||||||+++..++.. -|.+.+.++... +..++.+-+..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~~~~ 70 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRNMAQ 70 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHHHHH
Confidence 7787888999999999999999876543 366777777654 44455544433
No 352
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.03 E-value=0.00063 Score=70.46 Aligned_cols=166 Identities=20% Similarity=0.178 Sum_probs=94.0
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhC--CCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---ChHH
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH---SNSE 286 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g--~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~---~~~~ 286 (455)
+|.|.+++|+.+.-.+.. ..+.-..-| +....+++|.|.||+.||-|.+.+.+-....+|..--++-+ +..-
T Consensus 343 EIyGheDVKKaLLLlLVG---gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG---GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhC---CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 577888888887655532 111000001 11123489999999999999999999988888865332211 1111
Q ss_pred HHHHH------Hh----cCCceEEEEeccccccccccccCCCccccccCCCccchhhH----hhHhhhhhccccCCCCce
Q 012846 287 LRRVL------LS----TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTL----SGLLNFLDGLWSSCGDER 352 (455)
Q Consensus 287 L~~ll------~~----~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~l----s~LL~~lDg~~~~~~~~~ 352 (455)
++.-+ .. .+..+|.+|||+|.+... +|...+.. ..+.++ .++...|.. ..
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-DRtAIHEV--------MEQQTISIaKAGI~TtLNA-------R~ 483 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-DRTAIHEV--------MEQQTISIAKAGINTTLNA-------RT 483 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-hhHHHHHH--------HHhhhhhhhhhccccchhh-------hH
Confidence 11110 11 135789999999998652 22111100 011111 122222211 12
Q ss_pred EEEEecCCCC-------------CCCccccCCCceeeEEEe-CCCCHHHHHHHHHHHcCC
Q 012846 353 IIVFTTNHKD-------------RLDPAVLRPGRMDVHIYM-SYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 353 iiI~tTN~~~-------------~LD~aLlrpgR~d~~I~~-~~p~~~~r~~l~~~~l~~ 398 (455)
-|+++.|... .||+||+. |||....+ ..|+.+.=..|+++....
T Consensus 484 sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyV 541 (721)
T KOG0482|consen 484 SILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYV 541 (721)
T ss_pred HhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhh
Confidence 3566666421 47899999 99977554 778888777888875443
No 353
>PRK09354 recA recombinase A; Provisional
Probab=97.03 E-value=0.0017 Score=65.73 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=44.5
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHH---cCCceEEeeccccC---------------------ChHHHHHHH---Hh
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNY---LNFDIYDLELSAVH---------------------SNSELRRVL---LS 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~---l~~~~~~l~~~~~~---------------------~~~~L~~ll---~~ 293 (455)
|.|..+-+++|||||||||+|+..++.. .+...+.++...-. +.++...++ ..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 5676777899999999999999877533 34455555433311 111112222 22
Q ss_pred cCCceEEEEeccccccc
Q 012846 294 TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 294 ~~~~sIlliDeiD~l~~ 310 (455)
.....+||||-|-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 24678999999998875
No 354
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.02 E-value=0.011 Score=56.88 Aligned_cols=127 Identities=18% Similarity=0.275 Sum_probs=76.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCC---ceEEeecccc---------------CChHHHH-----------HHHHhc-
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNF---DIYDLELSAV---------------HSNSELR-----------RVLLST- 294 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~---~~~~l~~~~~---------------~~~~~L~-----------~ll~~~- 294 (455)
+-.+.+.||+|||||+++..+-..+.. +++.+....- ....++. +.....
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 446899999999999999999776643 2232211110 0111211 121111
Q ss_pred ----CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccC
Q 012846 295 ----GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLR 370 (455)
Q Consensus 295 ----~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlr 370 (455)
..+++|+|||+-.-. ..+..+.++++. |- .-++-+|+.+...-.|||.+..
T Consensus 93 ~~k~~~~~LiIlDD~~~~~-------------------~k~~~l~~~~~~--gR----H~~is~i~l~Q~~~~lp~~iR~ 147 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDKK-------------------LKSKILRQFFNN--GR----HYNISIIFLSQSYFHLPPNIRS 147 (241)
T ss_pred ccCCCCCeEEEEeCCCCch-------------------hhhHHHHHHHhc--cc----ccceEEEEEeeecccCCHHHhh
Confidence 136899999974210 112235555542 11 1246778888888899999855
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 371 PGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 371 pgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
=++.++-+. -+..+.+.+++++....
T Consensus 148 --n~~y~i~~~-~s~~dl~~i~~~~~~~~ 173 (241)
T PF04665_consen 148 --NIDYFIIFN-NSKRDLENIYRNMNIKG 173 (241)
T ss_pred --cceEEEEec-CcHHHHHHHHHhccccc
Confidence 678788776 57888888888876543
No 355
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.0006 Score=60.89 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=25.9
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
+-+.||||||||++++-||+++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999885
No 356
>PRK14528 adenylate kinase; Provisional
Probab=97.02 E-value=0.00067 Score=62.79 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=26.7
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
.+++.||||+|||++++.+|..++++.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999877653
No 357
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.01 E-value=0.00066 Score=62.21 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=25.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
.-+++.||||+|||++++.++..+|+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 358899999999999999999998876543
No 358
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.01 E-value=0.0023 Score=58.95 Aligned_cols=25 Identities=36% Similarity=0.705 Sum_probs=22.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
++-++|.||+|+||+++++.|....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3578999999999999999999886
No 359
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.00052 Score=61.98 Aligned_cols=30 Identities=23% Similarity=0.526 Sum_probs=26.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
-++++|.||||||++++.++ .++++++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 9999887654
No 360
>PRK02496 adk adenylate kinase; Provisional
Probab=96.99 E-value=0.00063 Score=62.54 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=26.2
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+++.||||+|||++++.||..++++.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 88999999999999999999999876654
No 361
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.98 E-value=0.0037 Score=62.39 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=52.3
Q ss_pred cccccc-cHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEE----eeccccCCh
Q 012846 210 FDTLAM-EAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD----LELSAVHSN 284 (455)
Q Consensus 210 f~~l~g-~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~----l~~~~~~~~ 284 (455)
++++.+ ++++++.+.+.+-..+... .+...-++|+|+.|+|||++...|...+|-.... +.+.++.+.
T Consensus 47 L~~~~~~d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~ 119 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH 119 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC
Confidence 344444 4556666666554444331 3445678999999999999999999888754322 112221110
Q ss_pred HHHHHHHHhcCCceEEEEecccc
Q 012846 285 SELRRVLLSTGNRSILVVEDIDC 307 (455)
Q Consensus 285 ~~L~~ll~~~~~~sIlliDeiD~ 307 (455)
. --+......-+++.+|++.
T Consensus 120 -~--f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 120 -R--FGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred -C--chhhhhcCCEEEEecCCCC
Confidence 0 1122334577888999873
No 362
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.011 Score=60.83 Aligned_cols=49 Identities=24% Similarity=0.452 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 217 AELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 217 ~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
..+++.+.+.+...+.....+ ...++-++|.||+|+|||+++..||..+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 445666666665555432211 1224678999999999999999999766
No 363
>PRK04328 hypothetical protein; Provisional
Probab=96.97 E-value=0.0053 Score=59.54 Aligned_cols=51 Identities=25% Similarity=0.244 Sum_probs=36.5
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHH---cCCceEEeeccccCChHHHHHHHHh
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNY---LNFDIYDLELSAVHSNSELRRVLLS 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~---l~~~~~~l~~~~~~~~~~L~~ll~~ 293 (455)
|.|.+..+|++||||||||.|+..++.. -+.+.+.++..+ +...+.+.+..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~~~~~ 72 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRRNMRQ 72 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHHHHHH
Confidence 6777788999999999999998876543 356777777655 34445555443
No 364
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.97 E-value=0.00088 Score=68.63 Aligned_cols=105 Identities=19% Similarity=0.330 Sum_probs=64.2
Q ss_pred cceEEEEEecCcchhhHHHhhhHHHHHhhhHHHh-------cCce------eEEEecccccccccCCCceeeeecCCC--
Q 012846 143 EIRYFNLTFHKQHKDKVLNSYFPYILRKSKSAQE-------ENKT------LKLYSLNQDHARRFGLDSWHWITFNHP-- 207 (455)
Q Consensus 143 ~~~~~~l~~~~~~~~~vl~~yl~~v~~~~~~~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 207 (455)
+.....|+=..-. ..-++.+..+|++.|+.... ..-+ .++-...+. ....|.-....+-
T Consensus 170 ~~k~v~l~d~pl~-~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarPP-----fSd~~EITavRPvvk 243 (604)
T COG1855 170 EWKLVRLSDKPLT-REELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIARPP-----FSDRWEITAVRPVVK 243 (604)
T ss_pred cEEEEEcCCccCC-HHHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEecCC-----CCCceEEEEEeeeEE
Confidence 4555555433332 34567888888887755321 1111 111111111 1234543333222
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
.++++....+.+++.|.+. .+|+|+.||||.|||++|+|+|.++..
T Consensus 244 ~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 244 LSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred echhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHHh
Confidence 3688888888888887653 369999999999999999999998743
No 365
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.96 E-value=0.0021 Score=56.80 Aligned_cols=63 Identities=27% Similarity=0.332 Sum_probs=41.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCC-----------ceEEeeccccCChHHHHHHHHh---cCCceEEEEeccccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNF-----------DIYDLELSAVHSNSELRRVLLS---TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~-----------~~~~l~~~~~~~~~~L~~ll~~---~~~~sIlliDeiD~l~~ 310 (455)
+..+.+.||+|+|||+|+++|+..... .+..+. + .+..+.+++... ..+|.++++||-..-++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~--~-lS~G~~~rv~laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE--Q-LSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEc--c-CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 456889999999999999999987631 111111 1 234444444332 24899999999876553
No 366
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.94 E-value=0.00077 Score=64.53 Aligned_cols=31 Identities=26% Similarity=0.547 Sum_probs=27.4
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
-++|.||||+|||++++.+|+.++++.+.++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4899999999999999999999998776553
No 367
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.005 Score=68.86 Aligned_cols=149 Identities=18% Similarity=0.268 Sum_probs=91.4
Q ss_pred ccccccc-HHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceEEeec
Q 012846 210 FDTLAME-AELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYDLEL 278 (455)
Q Consensus 210 f~~l~g~-~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~l~~ 278 (455)
++-++|. ++-.+.+++.+. ...+++-+|.|.||+|||.++.-+|+.. +..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~-------------Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS-------------RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHh-------------ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5667775 555555555542 2234788999999999999999999765 345667777
Q ss_pred cccCC--------hHHHHHHHHh---cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC
Q 012846 279 SAVHS--------NSELRRVLLS---TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS 347 (455)
Q Consensus 279 ~~~~~--------~~~L~~ll~~---~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~ 347 (455)
..+.. +..++.++.. ...+.||+|||++.+...... . ...-...+|..+-. .
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~--~------------~~~d~~nlLkp~L~---r 314 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN--Y------------GAIDAANLLKPLLA---R 314 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc--c------------hHHHHHHhhHHHHh---c
Confidence 65542 3456666654 346789999999999863222 0 01112333333221 1
Q ss_pred CCCceEEEEecCCC-----CCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 012846 348 CGDERIIVFTTNHK-----DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAA 393 (455)
Q Consensus 348 ~~~~~iiI~tTN~~-----~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~ 393 (455)
++.-+|+||..- -.=||+|-| ||+ .+.++.|+.+.-..++.
T Consensus 315 --g~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~ 360 (898)
T KOG1051|consen 315 --GGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILP 360 (898)
T ss_pred --CCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhh
Confidence 226667655421 234899999 997 45678888665333333
No 368
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.93 E-value=0.00077 Score=63.48 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=26.0
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+++.||||+|||++++.||..+++..+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998877653
No 369
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.92 E-value=0.0014 Score=50.45 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=23.7
Q ss_pred eEEeCCCCCChHHHHHHHHHHc-CCceEEee
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL-NFDIYDLE 277 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l-~~~~~~l~ 277 (455)
+.+.|+||+|||++++++++.+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 5789999999999999999996 24444443
No 370
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.91 E-value=0.012 Score=58.77 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=25.4
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcCCc
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFD 272 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~~~ 272 (455)
..+..+.|+|+=|+|||++++.+-+.+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 456789999999999999999998877544
No 371
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.91 E-value=0.004 Score=64.00 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
.-+++.||||+|||+|++.|++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4489999999999999999999764
No 372
>PRK06696 uridine kinase; Validated
Probab=96.91 E-value=0.0026 Score=60.55 Aligned_cols=39 Identities=10% Similarity=0.226 Sum_probs=32.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHS 283 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~ 283 (455)
+.-|.+.|+||+|||++|+.|+..+ +.+++.+.+.++..
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 4568899999999999999999998 66777777666653
No 373
>PLN02200 adenylate kinase family protein
Probab=96.91 E-value=0.001 Score=63.87 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=28.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
+.-+++.||||+|||++++.||..+++.. ++.+++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdl 77 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDL 77 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHH
Confidence 34688999999999999999999998754 444443
No 374
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.91 E-value=0.00088 Score=63.33 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=26.4
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
|+++||||+|||++++.||..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999777654
No 375
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.88 E-value=0.00069 Score=57.71 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=21.0
Q ss_pred eEEeCCCCCChHHHHHHHHHHc
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l 269 (455)
|+|.|+||||||++++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 376
>PRK14527 adenylate kinase; Provisional
Probab=96.87 E-value=0.00087 Score=62.12 Aligned_cols=31 Identities=23% Similarity=0.525 Sum_probs=26.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
+.-++++||||+|||++++.+|+.++...+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4569999999999999999999999876553
No 377
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.85 E-value=0.0025 Score=59.55 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=26.2
Q ss_pred hhHHhhh--CCCCCceeEEeCCCCCChHHHHHHHHH
Q 012846 234 KDYYRRV--GKAWKRGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 234 ~~~y~~~--g~~~~rgiLL~GppGTGKT~la~aiA~ 267 (455)
.+.-+++ |+|.+.-+|+.|+.|||||.|.+.++-
T Consensus 15 delDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~Y 50 (235)
T COG2874 15 DELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAY 50 (235)
T ss_pred HHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHH
Confidence 3444555 466666689999999999999999873
No 378
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.85 E-value=0.0017 Score=68.94 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=43.4
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--------ChHHHHHHHHh-----cCCceEEEEeccccccc
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--------SNSELRRVLLS-----TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--------~~~~L~~ll~~-----~~~~sIlliDeiD~l~~ 310 (455)
+||+|.||||||-+.+.+++-....++..-.+.-. .+.--++.-.. .+.++|.+|||+|.+-+
T Consensus 485 vLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd 560 (854)
T KOG0477|consen 485 VLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND 560 (854)
T ss_pred EEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcc
Confidence 89999999999999999999888887764332211 01111112111 23688999999999865
No 379
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.83 E-value=0.00082 Score=61.84 Aligned_cols=33 Identities=30% Similarity=0.641 Sum_probs=26.2
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
-+++.||||+||||+|+.||+. +++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHH
Confidence 4789999999999999999999 44555554443
No 380
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.83 E-value=0.004 Score=60.36 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
+.-+++.||+|+|||+|++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 445899999999999999999998765
No 381
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.82 E-value=0.02 Score=67.03 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=80.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHH------------H---H-HHHHhcCCceEEEEecccccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSE------------L---R-RVLLSTGNRSILVVEDIDCSL 309 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~------------L---~-~ll~~~~~~sIlliDeiD~l~ 309 (455)
-.+|+-||.-+|||+++..+|...|-.++.++.-+..+-.+ | . -+....+++--|++||..-..
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLAp 968 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAP 968 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCc
Confidence 45999999999999999999999999999997554321111 0 0 112233456678999987432
Q ss_pred ccccccCCCccccccCCCccchhhHhhHhhhh--------hccccCCCCceEEEEecCCCC------CCCccccCCCcee
Q 012846 310 ELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFL--------DGLWSSCGDERIIVFTTNHKD------RLDPAVLRPGRMD 375 (455)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l--------Dg~~~~~~~~~iiI~tTN~~~------~LD~aLlrpgR~d 375 (455)
. +.-..|+.||.-= +.+. .+..+..+++|-|.|. -|..|+.. ||
T Consensus 969 T------------------DVLEaLNRLLDDNRelfIPETqevV-~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF- 1026 (4600)
T COG5271 969 T------------------DVLEALNRLLDDNRELFIPETQEVV-VPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF- 1026 (4600)
T ss_pred H------------------HHHHHHHHhhccccceecCCcceee-ccCCCeeEEeecCCCccccchHHHHHHHHh--hh-
Confidence 1 2222333333211 1111 1234567777888764 35677776 87
Q ss_pred eEEEeCCCCHHHHHHHHHHHc
Q 012846 376 VHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 376 ~~I~~~~p~~~~r~~l~~~~l 396 (455)
..++|..-..++...|+..-.
T Consensus 1027 lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1027 LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred HhhhcccCcHHHHHHHHhccC
Confidence 567777777777777776443
No 382
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.81 E-value=0.0053 Score=58.51 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=41.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHH-H----cCCc---------eE-----Eeeccc-cC--------ChHHHHHHHHhcCC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSN-Y----LNFD---------IY-----DLELSA-VH--------SNSELRRVLLSTGN 296 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~-~----l~~~---------~~-----~l~~~~-~~--------~~~~L~~ll~~~~~ 296 (455)
.+-++|.||.|+|||++.+.++. . .|.. ++ .+...+ +. .-.++..++..+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999986 2 1211 11 111111 10 11456677778889
Q ss_pred ceEEEEecccc
Q 012846 297 RSILVVEDIDC 307 (455)
Q Consensus 297 ~sIlliDeiD~ 307 (455)
+++++|||+..
T Consensus 111 ~sLvllDE~~~ 121 (222)
T cd03287 111 RSLVILDELGR 121 (222)
T ss_pred CeEEEEccCCC
Confidence 99999999864
No 383
>PRK04182 cytidylate kinase; Provisional
Probab=96.81 E-value=0.0011 Score=60.11 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=26.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
.|+|.|+||+|||++++.+|+.+++++++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998876
No 384
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.80 E-value=0.0037 Score=62.35 Aligned_cols=62 Identities=19% Similarity=0.334 Sum_probs=39.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC-----CceEEeecc-ccC-------------ChHHHHHHHHhc--CCceEEEEe
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN-----FDIYDLELS-AVH-------------SNSELRRVLLST--GNRSILVVE 303 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~-----~~~~~l~~~-~~~-------------~~~~L~~ll~~~--~~~sIlliD 303 (455)
+.++++.||+|+|||++++++++++. ..++.++-. ++. ....+.+++..+ .+|.+|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46899999999999999999998862 333333211 000 011344444433 368888888
Q ss_pred ccc
Q 012846 304 DID 306 (455)
Q Consensus 304 eiD 306 (455)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 885
No 385
>PRK04296 thymidine kinase; Provisional
Probab=96.79 E-value=0.0059 Score=56.68 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=23.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc---CCceEEe
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL---NFDIYDL 276 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l---~~~~~~l 276 (455)
-.+++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 47899999999999888887654 5555544
No 386
>PLN02199 shikimate kinase
Probab=96.79 E-value=0.0025 Score=62.82 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=30.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
++.|+|.|++|+|||++++.+|+.+++++++.|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 468999999999999999999999999999876
No 387
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.77 E-value=0.0089 Score=67.15 Aligned_cols=64 Identities=13% Similarity=0.320 Sum_probs=39.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH-----cCC----------ceEEeeccccCC--------------hHHHHHHHHhcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY-----LNF----------DIYDLELSAVHS--------------NSELRRVLLSTG 295 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~-----l~~----------~~~~l~~~~~~~--------------~~~L~~ll~~~~ 295 (455)
.+.++|+||.+.|||++.+.++-. .|. ++++--.+.+.+ -..+..++..+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCC
Confidence 357899999999999999888632 232 222111111111 123445555567
Q ss_pred CceEEEEeccccc
Q 012846 296 NRSILVVEDIDCS 308 (455)
Q Consensus 296 ~~sIlliDeiD~l 308 (455)
.+++++|||+-.-
T Consensus 407 ~~sLvLlDE~~~G 419 (782)
T PRK00409 407 KNSLVLFDELGAG 419 (782)
T ss_pred cCcEEEecCCCCC
Confidence 8999999999753
No 388
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.77 E-value=0.01 Score=59.89 Aligned_cols=128 Identities=16% Similarity=0.245 Sum_probs=76.6
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCCh----------------------------HHHHHHHHh--
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN----------------------------SELRRVLLS-- 293 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~----------------------------~~L~~ll~~-- 293 (455)
.|..+.|||-.|||||.+++++-+.++.+.+.+++-+..+- ..+..+|.+
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~ 108 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWP 108 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhH
Confidence 46677999999999999999999999988887766544210 112233332
Q ss_pred -cC---CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE-ecCCCCCCCccc
Q 012846 294 -TG---NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF-TTNHKDRLDPAV 368 (455)
Q Consensus 294 -~~---~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~-tTN~~~~LD~aL 368 (455)
+. +...|++|.+|.+-+ .....+..|+..-.-+ .. ....||+ .+-.+.. -+
T Consensus 109 ~~t~~d~~~~liLDnad~lrD------------------~~a~ll~~l~~L~el~-~~--~~i~iils~~~~e~~---y~ 164 (438)
T KOG2543|consen 109 AATNRDQKVFLILDNADALRD------------------MDAILLQCLFRLYELL-NE--PTIVIILSAPSCEKQ---YL 164 (438)
T ss_pred HhhccCceEEEEEcCHHhhhc------------------cchHHHHHHHHHHHHh-CC--CceEEEEeccccHHH---hh
Confidence 11 256889999998753 2334455554432222 11 1122222 2322222 12
Q ss_pred cCCCce-eeEEEeCCCCHHHHHHHHHHH
Q 012846 369 LRPGRM-DVHIYMSYCTPCGFDTLAANY 395 (455)
Q Consensus 369 lrpgR~-d~~I~~~~p~~~~r~~l~~~~ 395 (455)
.+-|-+ -..++||.++.++.++|+.+-
T Consensus 165 ~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 165 INTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 233444 357899999999988887643
No 389
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.77 E-value=0.0068 Score=56.66 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=40.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHH-H----cCCce--------------EEeeccccC---------ChHHHHHHHHhcCCc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN-Y----LNFDI--------------YDLELSAVH---------SNSELRRVLLSTGNR 297 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~-~----l~~~~--------------~~l~~~~~~---------~~~~L~~ll~~~~~~ 297 (455)
.-++|.||.|+|||++.++|+. . .|..+ ..+...+.. .-..+..++.....|
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 4689999999999999999983 1 22211 111111110 013344555556789
Q ss_pred eEEEEecccccc
Q 012846 298 SILVVEDIDCSL 309 (455)
Q Consensus 298 sIlliDeiD~l~ 309 (455)
.++++||.-.-.
T Consensus 110 ~llllDEp~~gl 121 (202)
T cd03243 110 SLVLIDELGRGT 121 (202)
T ss_pred eEEEEecCCCCC
Confidence 999999997544
No 390
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.77 E-value=0.0013 Score=59.25 Aligned_cols=29 Identities=24% Similarity=0.608 Sum_probs=26.6
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+.++|+||+|||++++.+|+.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999997754
No 391
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.76 E-value=0.0093 Score=66.87 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
+.++|.||.|.|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 57899999999999999999765
No 392
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.76 E-value=0.0062 Score=59.62 Aligned_cols=85 Identities=22% Similarity=0.304 Sum_probs=52.2
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC---CceEEeec-ccc--
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDIYDLEL-SAV-- 281 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~---~~~~~l~~-~~~-- 281 (455)
.+++++...++..+.+.+.+. . ....+++.||+|+|||+++.++..++. ..++.++- .++
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~----~----------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE----K----------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh----c----------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 468888888777666544331 1 122479999999999999999987764 33444421 111
Q ss_pred --------CC--hHHHHHHHHhc--CCceEEEEeccc
Q 012846 282 --------HS--NSELRRVLLST--GNRSILVVEDID 306 (455)
Q Consensus 282 --------~~--~~~L~~ll~~~--~~~sIlliDeiD 306 (455)
.. .......+..+ ..|.+|++.||.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 11223333222 379999999995
No 393
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.76 E-value=0.0062 Score=56.19 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=39.4
Q ss_pred eEEeCCCCCChHHHHHHHHH-----HcCCce---------E-----EeeccccC---------ChHHHHHHHHhcCCceE
Q 012846 248 YLLYGPPGTGKSSLIAAMSN-----YLNFDI---------Y-----DLELSAVH---------SNSELRRVLLSTGNRSI 299 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~-----~l~~~~---------~-----~l~~~~~~---------~~~~L~~ll~~~~~~sI 299 (455)
++|+||.|.|||++.+.++- ..|..+ + .+...+.. .-.++..++..+..|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999982 233222 1 11111111 01345555666668999
Q ss_pred EEEecccccc
Q 012846 300 LVVEDIDCSL 309 (455)
Q Consensus 300 lliDeiD~l~ 309 (455)
+++||.-.-.
T Consensus 82 lllDEp~~g~ 91 (185)
T smart00534 82 VLLDELGRGT 91 (185)
T ss_pred EEEecCCCCC
Confidence 9999997544
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.76 E-value=0.0053 Score=57.36 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.5
Q ss_pred ceeEEeCCCCCChHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMS 266 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA 266 (455)
+.++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999988
No 395
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.74 E-value=0.00096 Score=60.06 Aligned_cols=26 Identities=31% Similarity=0.632 Sum_probs=20.8
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceE
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIY 274 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~ 274 (455)
|.|+|+||||||+|+++|+.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999999 77755
No 396
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.74 E-value=0.00096 Score=59.31 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=22.5
Q ss_pred EeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 250 LYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 250 L~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
|.||||+|||++++.||..+++..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999998765443
No 397
>PHA00350 putative assembly protein
Probab=96.73 E-value=0.0023 Score=65.85 Aligned_cols=121 Identities=10% Similarity=0.101 Sum_probs=61.8
Q ss_pred eeEEeCCCCCChHHHHHH--H--HHHcCCceEEeeccccCCh--------------------------HHHHHHHHhcCC
Q 012846 247 GYLLYGPPGTGKSSLIAA--M--SNYLNFDIYDLELSAVHSN--------------------------SELRRVLLSTGN 296 (455)
Q Consensus 247 giLL~GppGTGKT~la~a--i--A~~l~~~~~~l~~~~~~~~--------------------------~~L~~ll~~~~~ 296 (455)
-++++|.||+|||+.+-. | |-.-|+.++. +...+.-+ ..+...+...+.
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~ 81 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLNLDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPR 81 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHhhcccCcccceeEEeccccccchhhhccccccCCC
Confidence 368999999999987664 3 3334665553 33322100 011111222457
Q ss_pred ceEEEEeccccccccccccCCCcccc-ccC----CCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCC
Q 012846 297 RSILVVEDIDCSLELEDRQAQPTTVN-VLK----PLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRP 371 (455)
Q Consensus 297 ~sIlliDeiD~l~~~~~~~~~~~~~~-~~~----~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrp 371 (455)
.++|||||+..+++.+.......... ..+ .+... -..+++++.... ..+.=||++|-++..||..+..
T Consensus 82 gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~---p~~~i~~l~~HR---H~G~DIiliTQ~~~~Id~~iR~- 154 (399)
T PHA00350 82 GALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEG---PENFLEAFMRHR---HYNWDIILLTPNIRKIHSDIRA- 154 (399)
T ss_pred CCEEEEECchhhcCCCccccccccccccccccccccccC---CHHHHHHHHHhc---ccCceEEEEeCCHHHhhHHHHH-
Confidence 79999999999987442211100000 000 00000 122333333211 1234477788888899888765
Q ss_pred Cceee
Q 012846 372 GRMDV 376 (455)
Q Consensus 372 gR~d~ 376 (455)
++++
T Consensus 155 -lvE~ 158 (399)
T PHA00350 155 -MIEM 158 (399)
T ss_pred -hhhh
Confidence 5555
No 398
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.73 E-value=0.0032 Score=54.98 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=25.2
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFD 272 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~ 272 (455)
+.-++|.|+.|+|||++++++++.++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4568999999999999999999999864
No 399
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.043 Score=52.81 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=87.7
Q ss_pred Cce-eEEeCCCCCChHHHHHHHHHHcCCce---EEeeccccCC--------------------------hHHHHHHHHhc
Q 012846 245 KRG-YLLYGPPGTGKSSLIAAMSNYLNFDI---YDLELSAVHS--------------------------NSELRRVLLST 294 (455)
Q Consensus 245 ~rg-iLL~GppGTGKT~la~aiA~~l~~~~---~~l~~~~~~~--------------------------~~~L~~ll~~~ 294 (455)
.+| +.++|+-|||||.+++|+...++-+= +.++...+.. +..|..++.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 454 56899999999999998877665332 2233222211 12233333444
Q ss_pred CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecC-CCC-CCC--ccccC
Q 012846 295 GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTN-HKD-RLD--PAVLR 370 (455)
Q Consensus 295 ~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN-~~~-~LD--~aLlr 370 (455)
.+|.++++||++.+.. ..-..+.-|.|.-++... .-.+++|+=.. ++. +++ ..+-+
T Consensus 130 ~r~v~l~vdEah~L~~------------------~~le~Lrll~nl~~~~~~--~l~ivL~Gqp~L~~~lr~~~l~e~~~ 189 (269)
T COG3267 130 KRPVVLMVDEAHDLND------------------SALEALRLLTNLEEDSSK--LLSIVLIGQPKLRPRLRLPVLRELEQ 189 (269)
T ss_pred CCCeEEeehhHhhhCh------------------hHHHHHHHHHhhcccccC--ceeeeecCCcccchhhchHHHHhhhh
Confidence 5679999999997753 112222333333222211 11234443211 110 110 12334
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHHcCCC--CCCcH--HHHHHHhhcCCCCHHHHHHHHH
Q 012846 371 PGRMDVHIYMSYCTPCGFDTLAANYLGIT--DHPLI--YEIKEIMQNVRVTPADVGEQLL 426 (455)
Q Consensus 371 pgR~d~~I~~~~p~~~~r~~l~~~~l~~~--~~~l~--~~i~~l~~~~~~tpa~i~~~l~ 426 (455)
|++..|++++.+.++-...++..|+.. +.+++ +.+..+-....-.|.-|.+++.
T Consensus 190 --R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 190 --RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred --eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999889999999998888888777653 23333 2233333344457777766643
No 400
>PRK04040 adenylate kinase; Provisional
Probab=96.73 E-value=0.0016 Score=60.52 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=25.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc--CCceE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL--NFDIY 274 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l--~~~~~ 274 (455)
.-++++|+||+|||++++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 468999999999999999999999 55543
No 401
>PRK01184 hypothetical protein; Provisional
Probab=96.72 E-value=0.0014 Score=60.13 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=24.7
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
-++|.||||+||||+++ +++.++++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999887 788998877654
No 402
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.71 E-value=0.0049 Score=61.94 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=40.7
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---------CCceEEeeccccCChHHHHHHHHhc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---------NFDIYDLELSAVHSNSELRRVLLST 294 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---------~~~~~~l~~~~~~~~~~L~~ll~~~ 294 (455)
|.+.+.-++++||||+|||.++..+|-.. +..++.++...-.+...+.++....
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~ 160 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEAL 160 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHc
Confidence 57777778999999999999999998653 3467788876654566777766443
No 403
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.70 E-value=0.0041 Score=57.11 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=40.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCc--eEEeec-------ccc-CChHHHHHHHHh---cCCceEEEEeccccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFD--IYDLEL-------SAV-HSNSELRRVLLS---TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~--~~~l~~-------~~~-~~~~~L~~ll~~---~~~~sIlliDeiD~l~~ 310 (455)
+.-+.|.||.|+|||+|++.|+..+... -+.++. ... .+..+-+++-.. ..+|.++++||--.-++
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 4468899999999999999999865311 111111 110 222333333222 24799999999875543
No 404
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.70 E-value=0.0015 Score=61.07 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=27.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
-+++.||+|||||.++-++|+.+|.+++.+|--..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 47899999999999999999999999999875554
No 405
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.69 E-value=0.0043 Score=55.99 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=40.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCc--eEEeecccc------------------CChHHHHHHHHh---cCCceEEE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFD--IYDLELSAV------------------HSNSELRRVLLS---TGNRSILV 301 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~--~~~l~~~~~------------------~~~~~L~~ll~~---~~~~sIll 301 (455)
+..+.|.||+|+|||+|.+.|+...... -+.++...+ .+..+.+++... ..+|.||+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 4568899999999999999999765311 111211111 122233333322 24799999
Q ss_pred Eeccccccc
Q 012846 302 VEDIDCSLE 310 (455)
Q Consensus 302 iDeiD~l~~ 310 (455)
+||-..-++
T Consensus 106 lDEP~~~LD 114 (163)
T cd03216 106 LDEPTAALT 114 (163)
T ss_pred EECCCcCCC
Confidence 999876543
No 406
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.67 E-value=0.0061 Score=52.50 Aligned_cols=64 Identities=23% Similarity=0.316 Sum_probs=40.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCc--------------------eEEeeccccCChHHHHHH--HHhcCCceEEEE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFD--------------------IYDLELSAVHSNSELRRV--LLSTGNRSILVV 302 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~--------------------~~~l~~~~~~~~~~L~~l--l~~~~~~sIlli 302 (455)
..-++|+|+=|+|||+++++++..++.. ++.+|+=-+.+..++..+ +......+|++|
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~I 94 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVI 94 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEE
Confidence 4568999999999999999999998643 334444444444444432 122345778888
Q ss_pred eccccc
Q 012846 303 EDIDCS 308 (455)
Q Consensus 303 DeiD~l 308 (455)
|=.+.+
T Consensus 95 EW~e~~ 100 (123)
T PF02367_consen 95 EWPERL 100 (123)
T ss_dssp ESGGGG
T ss_pred ECcccc
Confidence 765544
No 407
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.66 E-value=0.0064 Score=59.69 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=23.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
.++++.||||+|||+|.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999998874
No 408
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.65 E-value=0.0022 Score=57.12 Aligned_cols=30 Identities=33% Similarity=0.532 Sum_probs=25.4
Q ss_pred eEEeCCCCCChHHHHHHHHHHc---CCceEEee
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL---NFDIYDLE 277 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l---~~~~~~l~ 277 (455)
+++.|+||+|||++++.++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999988 55555554
No 409
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.62 E-value=0.0029 Score=62.07 Aligned_cols=61 Identities=21% Similarity=0.370 Sum_probs=34.4
Q ss_pred eEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC----------ChHHHHHHHHh-----cCCceEEEEeccccc
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH----------SNSELRRVLLS-----TGNRSILVVEDIDCS 308 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~----------~~~~L~~ll~~-----~~~~sIlliDeiD~l 308 (455)
++|+|.||+|||++|+.|+.++ +..+..++...+. .+..++..+.. ..+..|+++|+.-.+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7899999999999999999875 4566665533321 23444444432 246689999998754
No 410
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.62 E-value=0.0046 Score=60.18 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=37.8
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHHHHHHHH
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSELRRVLL 292 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~L~~ll~ 292 (455)
|.|.++.+|++|+||||||+++...+... |.+++.++..+. ..++.+.+.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 67778889999999999999998886543 677888877653 455555543
No 411
>PRK08233 hypothetical protein; Provisional
Probab=96.62 E-value=0.0022 Score=58.37 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=25.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC-CceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN-FDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~-~~~~~l~ 277 (455)
.-+.+.|+||+||||+++.|+..++ ..++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3467889999999999999999985 4444444
No 412
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.62 E-value=0.0018 Score=64.19 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=25.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc-CCceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL-NFDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l-~~~~~~ 275 (455)
.-+++.||||||||++++.+++.+ +..+++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 458899999999999999999998 555554
No 413
>PRK14526 adenylate kinase; Provisional
Probab=96.58 E-value=0.0022 Score=60.70 Aligned_cols=28 Identities=36% Similarity=0.714 Sum_probs=25.0
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
++|.||||+|||++++.+|..++...+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876554
No 414
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.57 E-value=0.0075 Score=60.51 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=40.2
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHH---------cCCceEEeeccccCChHHHHHHHHhc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNY---------LNFDIYDLELSAVHSNSELRRVLLST 294 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~---------l~~~~~~l~~~~~~~~~~L~~ll~~~ 294 (455)
|.+...-++++||||+|||.++..+|-. .+..++.++...-.+.+.+.++....
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 5777777899999999999999887632 24567778876655667777776544
No 415
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.57 E-value=0.0054 Score=61.34 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=30.8
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---------CCceEEeeccc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---------NFDIYDLELSA 280 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---------~~~~~~l~~~~ 280 (455)
|.+.+.-++++||||+|||+++..+|... +..++.++...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56667778999999999999999997653 23666676555
No 416
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.016 Score=53.25 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=41.2
Q ss_pred eEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC--CCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 012846 376 VHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV--RVTPADVGEQLLKNEDPEIALKGLLEFLNAKLI 447 (455)
Q Consensus 376 ~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~--~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~~~ 447 (455)
..|.+-+|+.++.+.-+. ..+.+..+.|..-+..+ ++..++--.+++-++|.+.|++.+...+.....
T Consensus 116 v~IFi~pPs~eeL~~RL~----~Rgtds~e~I~~Rl~~a~~Ei~~~~~fdyvivNdd~e~a~~~l~~ii~aer~ 185 (191)
T COG0194 116 VSIFILPPSLEELERRLK----GRGTDSEEVIARRLENAKKEISHADEFDYVIVNDDLEKALEELKSIILAERL 185 (191)
T ss_pred EEEEEcCCCHHHHHHHHH----ccCCCCHHHHHHHHHHHHHHHHHHHhCCEEEECccHHHHHHHHHHHHHHHHH
Confidence 567888888887655444 22233444554444432 233333333344689999999999998877644
No 417
>PRK10646 ADP-binding protein; Provisional
Probab=96.55 E-value=0.018 Score=51.50 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=24.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
+.-++|.|+=|+|||++++++++.++.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345899999999999999999999874
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.54 E-value=0.007 Score=56.90 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=38.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHH-----HcCCce---------E-----Eeeccc-cC--------ChHHHHHHHHhcCC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSN-----YLNFDI---------Y-----DLELSA-VH--------SNSELRRVLLSTGN 296 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~-----~l~~~~---------~-----~l~~~~-~~--------~~~~L~~ll~~~~~ 296 (455)
++-++|.||.|+|||++.+.++. .+|..+ + .+...+ +. .-.++..++....+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 35689999999999999999863 233321 1 111111 00 01234444555568
Q ss_pred ceEEEEecccc
Q 012846 297 RSILVVEDIDC 307 (455)
Q Consensus 297 ~sIlliDeiD~ 307 (455)
++++++||+..
T Consensus 109 ~~lvllDE~~~ 119 (204)
T cd03282 109 DSLVLIDELGR 119 (204)
T ss_pred CcEEEeccccC
Confidence 99999999864
No 419
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.53 E-value=0.012 Score=57.37 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=57.5
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---------CCceEEeeccccCChHHHHHHH--------------------
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---------NFDIYDLELSAVHSNSELRRVL-------------------- 291 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---------~~~~~~l~~~~~~~~~~L~~ll-------------------- 291 (455)
|++.+.-+=|+||||+|||.|+-.+|-.. +..++.++...-.+...+.++.
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 45444445699999999999998887543 3447777765543333332222
Q ss_pred ---------Hhc------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC
Q 012846 292 ---------LST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS 347 (455)
Q Consensus 292 ---------~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~ 347 (455)
... .+-.+|+||-|-.++...-. +... +......+..++..|-.+...
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~-~~~~-------~~~R~~~L~~~~~~L~~lA~~ 176 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFS-GRGD-------LAERQRMLARLARILKRLARK 176 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSG-STTT-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHc-cchh-------hHHHHHHHHHHHHHHHHHHHh
Confidence 111 24579999999988752211 1100 003345677777777666543
No 420
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.52 E-value=0.0024 Score=58.93 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=25.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
..+.|.||+|+||||+++.|+..++.+++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 358899999999999999999988766544
No 421
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.01 Score=63.01 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=41.8
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEeeccc--c--------------------CChHHHHHHHHhcCC
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLELSA--V--------------------HSNSELRRVLLSTGN 296 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~~~~--~--------------------~~~~~L~~ll~~~~~ 296 (455)
++..+.|.||+|+|||+++..||..+ +..+..++... . .+...+...+.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 35568899999999999999998754 22343333211 1 123456666666666
Q ss_pred ceEEEEecccc
Q 012846 297 RSILVVEDIDC 307 (455)
Q Consensus 297 ~sIlliDeiD~ 307 (455)
..+||||..-.
T Consensus 429 ~DLVLIDTaG~ 439 (559)
T PRK12727 429 YKLVLIDTAGM 439 (559)
T ss_pred CCEEEecCCCc
Confidence 77888888753
No 422
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.50 E-value=0.0027 Score=61.46 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=25.8
Q ss_pred eEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
++|.|+||+|||++|++++..+ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999987 456666543
No 423
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.50 E-value=0.0066 Score=61.55 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=40.3
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---------CCceEEeeccccCChHHHHHHHHhc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---------NFDIYDLELSAVHSNSELRRVLLST 294 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---------~~~~~~l~~~~~~~~~~L~~ll~~~ 294 (455)
|++...-+.|+||||||||.|+..+|-.. +..++.++...-....++.++....
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~ 184 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHc
Confidence 56666778999999999999999886322 3567778876655677777776543
No 424
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.046 Score=56.70 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=25.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc----CCceEEeecc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL----NFDIYDLELS 279 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l----~~~~~~l~~~ 279 (455)
+.-++|.||+|+|||+++..+|... |..+..+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 3458899999999999999999654 3444444433
No 425
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.48 E-value=0.007 Score=60.87 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=39.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc-----CCceEEeec-cccC------------ChHHHHHHHHhc--CCceEEEEec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLEL-SAVH------------SNSELRRVLLST--GNRSILVVED 304 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~~-~~~~------------~~~~L~~ll~~~--~~~sIlliDe 304 (455)
+.++|+.||+|+|||++++|++.++ +..++.++- .++. ..-.+.+++..+ .+|..|++-|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4689999999999999999999876 233444331 1110 112234444332 3788898888
Q ss_pred cc
Q 012846 305 ID 306 (455)
Q Consensus 305 iD 306 (455)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 84
No 426
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.48 E-value=0.18 Score=50.59 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=51.3
Q ss_pred CceEEEEeccccccccccccCCCccccccCCCccchhh-HhhHhhhhhccccCCCCceEE-EEecC---CCC--CCCccc
Q 012846 296 NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT-LSGLLNFLDGLWSSCGDERII-VFTTN---HKD--RLDPAV 368 (455)
Q Consensus 296 ~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~-ls~LL~~lDg~~~~~~~~~ii-I~tTN---~~~--~LD~aL 368 (455)
-|.++.||++.+++..+.=..... ... .....+ ...|++.+.+-.+-+.+.+++ +.+|. .+. .++.+|
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~--~~I---~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L 230 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDF--KPI---HPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVAL 230 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCC--ccc---cHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhh
Confidence 367888999999986422111110 000 022233 344555544333322222321 44433 223 456666
Q ss_pred cC-CCc-----ee-------------eEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 369 LR-PGR-----MD-------------VHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 369 lr-pgR-----~d-------------~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
.. +++ |. ..|+++..+.++.+.+++.|....
T Consensus 231 ~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 231 GGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred ccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCC
Confidence 53 221 10 167889999999999999887554
No 427
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.48 E-value=0.0056 Score=62.14 Aligned_cols=60 Identities=25% Similarity=0.395 Sum_probs=42.8
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcCCceEEEEeccc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDID 306 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD 306 (455)
|+|.+..+++||||+||||+++-.+-+.++..++..-.+.- +=.|.-...--|-+|||+-
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~S------hFWLqPL~d~Ki~llDDAT 317 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS------HFWLQPLADAKIALLDDAT 317 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTTS------CGGGGGGCT-SSEEEEEE-
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCCC------cccccchhcCcEEEEcCCc
Confidence 78889999999999999999999999999988776422211 0112233455688899875
No 428
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.45 E-value=0.0098 Score=62.75 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=44.7
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC--------------------ChHHHHHHHHh--cC
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH--------------------SNSELRRVLLS--TG 295 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~--------------------~~~~L~~ll~~--~~ 295 (455)
|.+...-+||+|+||+|||+|+..+|..+ +.+++.++..+-. .+..+..+... ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56666679999999999999999987654 3456555543211 01112222222 23
Q ss_pred CceEEEEecccccc
Q 012846 296 NRSILVVEDIDCSL 309 (455)
Q Consensus 296 ~~sIlliDeiD~l~ 309 (455)
++.+|+||.|-.+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 68899999998764
No 429
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.45 E-value=0.0032 Score=58.86 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=25.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCce
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDI 273 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~ 273 (455)
+.-+++.|+||+|||++++.+|..++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34689999999999999999999987643
No 430
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.0096 Score=54.09 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
.+.-+.|.||+|+|||+|.++|+..+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568999999999999999999875
No 431
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.43 E-value=0.0081 Score=66.75 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=43.8
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHH---HcCCceEEeeccccC---------------------ChHHHHHHHH---h
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSN---YLNFDIYDLELSAVH---------------------SNSELRRVLL---S 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~---~l~~~~~~l~~~~~~---------------------~~~~L~~ll~---~ 293 (455)
|.+..+.++++||||||||+|+..++. ..+..+..++...-. +.+.+..++. .
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 567777799999999999999965433 234455544433211 1122222222 2
Q ss_pred cCCceEEEEeccccccc
Q 012846 294 TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 294 ~~~~sIlliDeiD~l~~ 310 (455)
...+.+|+||-|..+.+
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 23688999999998875
No 432
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.43 E-value=0.02 Score=63.95 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=40.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc---C--CceEEeeccccC----------ChHHHHHHHHhc------------CCce
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL---N--FDIYDLELSAVH----------SNSELRRVLLST------------GNRS 298 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l---~--~~~~~l~~~~~~----------~~~~L~~ll~~~------------~~~s 298 (455)
+-.+|.|+||||||++++++...+ + ..++.+..+.-. ....++++|... ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468899999999999999996654 4 445544433221 123455555321 1346
Q ss_pred EEEEeccccc
Q 012846 299 ILVVEDIDCS 308 (455)
Q Consensus 299 IlliDeiD~l 308 (455)
+|++||+-.+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999754
No 433
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.42 E-value=0.012 Score=59.21 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+..+++.||+|+|||+++++++.+.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999999864
No 434
>PF13479 AAA_24: AAA domain
Probab=96.42 E-value=0.0022 Score=60.70 Aligned_cols=60 Identities=27% Similarity=0.449 Sum_probs=39.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCce-EEeeccc-------------cCChHHHHHHHHhc----CCceEEEEecccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDI-YDLELSA-------------VHSNSELRRVLLST----GNRSILVVEDIDC 307 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~-~~l~~~~-------------~~~~~~L~~ll~~~----~~~sIlliDeiD~ 307 (455)
-.++||||||+|||+++..+ +.++ ++++.+. +.+-.++.+.+... ..--+|+||-++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 35899999999999999888 3332 2333331 11345666665443 2446999998887
Q ss_pred cc
Q 012846 308 SL 309 (455)
Q Consensus 308 l~ 309 (455)
+.
T Consensus 80 ~~ 81 (213)
T PF13479_consen 80 LE 81 (213)
T ss_pred HH
Confidence 63
No 435
>PLN02459 probable adenylate kinase
Probab=96.40 E-value=0.0037 Score=60.77 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=25.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
..++|.||||+|||++++.+|+.+++..+.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 348889999999999999999999876554
No 436
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.40 E-value=0.0033 Score=67.78 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=29.7
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
-+.|.|+||+|||++.+.+|+.++++++++|.
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 48899999999999999999999999999863
No 437
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.39 E-value=0.014 Score=57.16 Aligned_cols=61 Identities=21% Similarity=0.434 Sum_probs=46.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCCh----HHHHHHHHhcC---CceEEEEeccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN----SELRRVLLSTG---NRSILVVEDID 306 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~----~~L~~ll~~~~---~~sIlliDeiD 306 (455)
...||.|.+|+||.++++..|.-.++.++.+..+.-.+- .+|+.++..+. ++++++|+|-+
T Consensus 32 Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 32 GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCC
T ss_pred CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcc
Confidence 358999999999999999999999999999987664432 45667766553 68899998865
No 438
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.38 E-value=0.012 Score=60.38 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.2
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l 269 (455)
.+|+.||+|+|||++++++..++
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998877
No 439
>PLN02674 adenylate kinase
Probab=96.38 E-value=0.0037 Score=60.36 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=26.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
+..++|.||||+||+++++.||..+++..+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3458999999999999999999999865543
No 440
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.36 E-value=0.0047 Score=56.20 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=26.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~ 277 (455)
+.-+.|.|+||+|||+++++++..+ +..+..++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id 39 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD 39 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 4468899999999999999999887 33444444
No 441
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=96.36 E-value=0.014 Score=62.14 Aligned_cols=91 Identities=20% Similarity=0.330 Sum_probs=51.8
Q ss_pred cccccc-cHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc-eEEeeccccCChHHH
Q 012846 210 FDTLAM-EAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD-IYDLELSAVHSNSEL 287 (455)
Q Consensus 210 f~~l~g-~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~-~~~l~~~~~~~~~~L 287 (455)
++++.+ +.++..-+.+.+-.-+.. ...+...+.|+||-|+|||+++..|.+.+|.. +..+..+.+...+.=
T Consensus 201 L~~~~~~d~el~~ll~~i~g~~l~g-------~~~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~~~~~~ 273 (517)
T COG3378 201 LDRVAGGDPELRNLLQRIIGASLTG-------RVSEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEADDRH 273 (517)
T ss_pred HHHhhcCCHHHHHHHHHHHhheecC-------cccceeEEEEEcCCCCChHHHHHHHHHHhccchhccccHHHhhhhccC
Confidence 566666 555554444433322222 13466789999999999999999999999753 333333333310000
Q ss_pred HHHHHhcCCceEEEEecccc
Q 012846 288 RRVLLSTGNRSILVVEDIDC 307 (455)
Q Consensus 288 ~~ll~~~~~~sIlliDeiD~ 307 (455)
+.-+......+++..+|.+.
T Consensus 274 ~~~~A~Lvg~~~v~~~E~~k 293 (517)
T COG3378 274 PFGLAALVGKRLVTVSETEK 293 (517)
T ss_pred cchHHHhhCceEEEecCccc
Confidence 11112223456777777664
No 442
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.34 E-value=0.013 Score=59.55 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.9
Q ss_pred CCceeEEeCCCCCChHHHHHHHHH
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~ 267 (455)
.|+|++|||.-|||||+|.-..-.
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~ 136 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYD 136 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhh
Confidence 479999999999999999877653
No 443
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.33 E-value=0.017 Score=60.50 Aligned_cols=83 Identities=25% Similarity=0.421 Sum_probs=55.8
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCce-eEEeCCCCCChHHHHHHHHHHcCCceE---Eee-----
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMSNYLNFDIY---DLE----- 277 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rg-iLL~GppGTGKT~la~aiA~~l~~~~~---~l~----- 277 (455)
..+|+++.+.+...+.+.+.+.. |.| +|+.||.|+|||++.-++-++++.+.. .++
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 34799999999888887766531 456 577899999999999999888865433 321
Q ss_pred -ccccC----------C-hHHHHHHHHhcCCceEEEEeccc
Q 012846 278 -LSAVH----------S-NSELRRVLLSTGNRSILVVEDID 306 (455)
Q Consensus 278 -~~~~~----------~-~~~L~~ll~~~~~~sIlliDeiD 306 (455)
...+. + ..-|+.++ ...|.||.+.||-
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~L--RqDPDvImVGEIR 337 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAIL--RQDPDVIMVGEIR 337 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHh--ccCCCeEEEeccC
Confidence 11111 1 12233332 2379999999995
No 444
>PRK13764 ATPase; Provisional
Probab=96.32 E-value=0.0043 Score=67.15 Aligned_cols=62 Identities=23% Similarity=0.391 Sum_probs=39.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC---CceEEee------cc----ccC----ChHHHHHHHHhcCCceEEEEecccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN---FDIYDLE------LS----AVH----SNSELRRVLLSTGNRSILVVEDIDC 307 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~---~~~~~l~------~~----~~~----~~~~L~~ll~~~~~~sIlliDeiD~ 307 (455)
+.++|++||||+||||+++|++.++. ..+..++ .. .+. +...+.+.+. ..+|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lL-R~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILL-LVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHH-hhCCCEEEECCCCC
Confidence 46899999999999999999998875 3332331 11 010 1122222221 34799999999864
No 445
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.31 E-value=0.005 Score=56.08 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-++|.|+||+|||++++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999886
No 446
>PRK14529 adenylate kinase; Provisional
Probab=96.31 E-value=0.0032 Score=60.02 Aligned_cols=27 Identities=26% Similarity=0.504 Sum_probs=25.2
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceE
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIY 274 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~ 274 (455)
++|.||||+|||++++.||..++++.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 789999999999999999999998765
No 447
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.30 E-value=0.0041 Score=57.06 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.7
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+.|+|+||+|||++++.+++ +|+++++.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67999999999999999999 888877654
No 448
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.29 E-value=0.014 Score=53.11 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+|||+|.++|+...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3458899999999999999999865
No 449
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.29 E-value=0.007 Score=61.72 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=22.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
.-+++.|.||||||.|+-.++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 458899999999999999999988
No 450
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.27 E-value=0.013 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=19.3
Q ss_pred ceeEEeCCCCCChHH-HHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSS-LIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~-la~aiA~~l~ 270 (455)
+.+++.||+|||||. ++..+...+.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 579999999999999 5555555443
No 451
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.26 E-value=0.019 Score=58.91 Aligned_cols=27 Identities=44% Similarity=0.730 Sum_probs=23.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
+..+++.||.|||||+++++|.+.+..
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 467899999999999999999888754
No 452
>PRK12338 hypothetical protein; Provisional
Probab=96.25 E-value=0.0041 Score=62.15 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=25.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCce
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDI 273 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~ 273 (455)
|.-+++.|+||+|||++|+++|..++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 45789999999999999999999998754
No 453
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.25 E-value=0.0039 Score=56.87 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.4
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~ 271 (455)
-+++.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998754
No 454
>PTZ00035 Rad51 protein; Provisional
Probab=96.22 E-value=0.014 Score=59.10 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=38.6
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---------CCceEEeeccccCChHHHHHHHHhc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---------NFDIYDLELSAVHSNSELRRVLLST 294 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---------~~~~~~l~~~~~~~~~~L~~ll~~~ 294 (455)
|++.+.-+.++||||+|||+++..+|... +..++.++.........+.++....
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~ 176 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERF 176 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHh
Confidence 56666678999999999999999887533 3355666665544556677776543
No 455
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.21 E-value=0.0043 Score=55.07 Aligned_cols=46 Identities=24% Similarity=0.425 Sum_probs=35.9
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHH
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRV 290 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~l 290 (455)
+.+-.+++-|++|+|||+++++++.+++.+|++- .++....+..++
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg--Dd~Hp~~NveKM 55 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDG--DDLHPPANVEKM 55 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCccccc--ccCCCHHHHHHH
Confidence 3455688999999999999999999999988754 455555555554
No 456
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.21 E-value=0.017 Score=54.84 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=41.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH-----cCC---------ceE-----Eeeccc-cC--------ChHHHHHHHHhcCC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY-----LNF---------DIY-----DLELSA-VH--------SNSELRRVLLSTGN 296 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~-----l~~---------~~~-----~l~~~~-~~--------~~~~L~~ll~~~~~ 296 (455)
++.++|+||.|.|||++.+.++.. .|. +++ .+...+ +. .-.++..++..+..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 457899999999999999888643 231 221 111111 11 11456677888889
Q ss_pred ceEEEEecccc
Q 012846 297 RSILVVEDIDC 307 (455)
Q Consensus 297 ~sIlliDeiD~ 307 (455)
+++++|||+-.
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999864
No 457
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.0078 Score=54.72 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=30.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAV 281 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~ 281 (455)
+..+.|.|.+|+|||++|.|+...| |+.+|.+|...+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 4568899999999999999999876 788888876443
No 458
>PLN02165 adenylate isopentenyltransferase
Probab=96.20 E-value=0.0048 Score=61.99 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=29.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeecc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~ 279 (455)
+..+.|.||+|+|||+|+..||..++..++..+.-
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 34689999999999999999999999877766544
No 459
>PRK10436 hypothetical protein; Provisional
Probab=96.18 E-value=0.032 Score=58.89 Aligned_cols=85 Identities=26% Similarity=0.480 Sum_probs=53.8
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCce-eEEeCCCCCChHHHHHHHHHHcC---CceEEee-----
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMSNYLN---FDIYDLE----- 277 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rg-iLL~GppGTGKT~la~aiA~~l~---~~~~~l~----- 277 (455)
+.+++++.+.+...+.+.+.+.. +.| +|+.||+|+|||++..++.++++ .+++.++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 34789999888777666554421 334 78999999999999888777664 3455442
Q ss_pred -cccc-----C--ChHHHHHHHHhc--CCceEEEEeccc
Q 012846 278 -LSAV-----H--SNSELRRVLLST--GNRSILVVEDID 306 (455)
Q Consensus 278 -~~~~-----~--~~~~L~~ll~~~--~~~sIlliDeiD 306 (455)
+..+ . ........+... ..|.||++.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1111 0 111233333332 379999999985
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.18 E-value=0.0046 Score=57.11 Aligned_cols=26 Identities=27% Similarity=0.671 Sum_probs=23.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+..+++.||+|+|||+++++++..+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46799999999999999999998764
No 461
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.17 E-value=0.0047 Score=57.71 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
|+-++|.||+|+|||+.+.-||.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4568999999999999999998766
No 462
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.17 E-value=0.0041 Score=56.63 Aligned_cols=22 Identities=36% Similarity=0.779 Sum_probs=19.9
Q ss_pred eEEeCCCCCChHHHHHHHHHHc
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l 269 (455)
++|.|+||+||||+++.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7999999999999999999888
No 463
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.16 E-value=0.013 Score=55.54 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=29.1
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
|.+.+.-+++.|+||+|||.++..++... +.+++.++.
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 66777779999999999999998887532 556655544
No 464
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.16 E-value=0.018 Score=58.40 Aligned_cols=54 Identities=15% Similarity=0.082 Sum_probs=39.8
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---------CCceEEeeccccCChHHHHHHHHhc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---------NFDIYDLELSAVHSNSELRRVLLST 294 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---------~~~~~~l~~~~~~~~~~L~~ll~~~ 294 (455)
|.+...-++++|+||+|||.++..+|-.. +..++.++...-.+.+.+.++....
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~ 181 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERF 181 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHc
Confidence 56666668999999999999999887432 2367778877655667777776554
No 465
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.16 E-value=0.015 Score=52.40 Aligned_cols=65 Identities=23% Similarity=0.420 Sum_probs=39.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc---------------CCceEEee----c--cccCC-h---HHHHHHHHhcC--Cce
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL---------------NFDIYDLE----L--SAVHS-N---SELRRVLLSTG--NRS 298 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l---------------~~~~~~l~----~--~~~~~-~---~~L~~ll~~~~--~~s 298 (455)
+..++.||.|+|||++.++++-.+ +..+-..+ . ..+.. . ..+...+.... .|.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 468999999999999999985322 22222222 0 11111 1 23344444433 789
Q ss_pred EEEEeccccccc
Q 012846 299 ILVVEDIDCSLE 310 (455)
Q Consensus 299 IlliDeiD~l~~ 310 (455)
+++|||+..-.+
T Consensus 102 llllDEp~~gld 113 (162)
T cd03227 102 LYILDEIDRGLD 113 (162)
T ss_pred EEEEeCCCCCCC
Confidence 999999986543
No 466
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.16 E-value=0.0075 Score=57.73 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=30.7
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc----CCceEEeecc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL----NFDIYDLELS 279 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l----~~~~~~l~~~ 279 (455)
|.+++.-++|.||||+|||+++..++... +.+++.+++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 66777779999999999999998886543 7777766643
No 467
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.15 E-value=0.013 Score=62.59 Aligned_cols=131 Identities=19% Similarity=0.201 Sum_probs=80.3
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHH--cCCceEEeeccccCChHHHHHHHHhc-------------------CCceEEEE
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNY--LNFDIYDLELSAVHSNSELRRVLLST-------------------GNRSILVV 302 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~--l~~~~~~l~~~~~~~~~~L~~ll~~~-------------------~~~sIlli 302 (455)
+.-.+|+.|.|||||-.+++++-+. ..-+++.++|..+. +..+...|+.. .....+|+
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip-~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIP-EALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccch-HHhhhHHHhccCccccccchhccccccceecCCCccHH
Confidence 3456999999999999999999543 56789999999885 23333333221 13579999
Q ss_pred eccccccccccccCCCccccccCCCccchhhHhhHhhhhh-ccccCCCC-----ceEEEEecCCCCCCCccccCCCcee-
Q 012846 303 EDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD-GLWSSCGD-----ERIIVFTTNHKDRLDPAVLRPGRMD- 375 (455)
Q Consensus 303 DeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD-g~~~~~~~-----~~iiI~tTN~~~~LD~aLlrpgR~d- 375 (455)
|||..+.- ...+.||..|. +..-.-|+ .+-||++|+.+= ..|.+.|||-
T Consensus 414 deIgd~p~---------------------~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fre 469 (606)
T COG3284 414 DEIGDMPL---------------------ALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFRE 469 (606)
T ss_pred HHhhhchH---------------------HHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchH
Confidence 99986532 22355665553 21111111 356777887642 2566777763
Q ss_pred --------eEEEeCCCCH-HHHHHHHHHHcCCC
Q 012846 376 --------VHIYMSYCTP-CGFDTLAANYLGIT 399 (455)
Q Consensus 376 --------~~I~~~~p~~-~~r~~l~~~~l~~~ 399 (455)
..|.+|.... .++..++.+++..+
T Consensus 470 dLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~ 502 (606)
T COG3284 470 DLYYRLNAFVITLPPLRERSDRIPLLDRILKRE 502 (606)
T ss_pred HHHHHhcCeeeccCchhcccccHHHHHHHHHHc
Confidence 3455655544 44555666665544
No 468
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.15 E-value=0.0048 Score=46.42 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=20.2
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l 269 (455)
..+|+||.|+|||++..||.--+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999997544
No 469
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.14 E-value=0.049 Score=49.09 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=21.3
Q ss_pred eEEeCCCCCChHHHHHHHHHHc---CCceEE
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL---NFDIYD 275 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l---~~~~~~ 275 (455)
+.+|+++|+|||++|-++|-.. |..+..
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6789999999999999887443 444444
No 470
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.11 E-value=0.0062 Score=56.84 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=29.5
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHc-CCceEEeeccccC
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYL-NFDIYDLELSAVH 282 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l-~~~~~~l~~~~~~ 282 (455)
.|.-+++.|+||+|||+++..+...+ +.+++.++...+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 46678999999999999999999888 7777777766654
No 471
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.11 E-value=0.027 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.5
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.++|.|+||+|||+++.++++.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999998753
No 472
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.10 E-value=0.016 Score=56.95 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSA 280 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~ 280 (455)
++-++|.||||+|||+++..+|..+ +..+..+++..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4678899999999999999998766 55555555443
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.10 E-value=0.012 Score=62.78 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=37.1
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHH----cCCceEEeeccccCChHHHHHHHHh
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNY----LNFDIYDLELSAVHSNSELRRVLLS 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~----l~~~~~~l~~~~~~~~~~L~~ll~~ 293 (455)
|.+.++.+|+.||||||||+|+..++.. .+.+.+.++..+ +..++.+....
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE--~~~~l~~~~~~ 71 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE--SPQDIIKNARS 71 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CHHHHHHHHHH
Confidence 6788888999999999999999988432 257877777653 44455444433
No 474
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.09 E-value=0.022 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~ 267 (455)
+.-+.|.||.|+|||+|.+++..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 44588999999999999999963
No 475
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.09 E-value=0.011 Score=54.12 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=27.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~ 282 (455)
.-+.+.||+|+|||+++++++..++.. .++...+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd~~~ 38 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK--FIDGDDLH 38 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE--EECCcccC
Confidence 358899999999999999999998874 33443443
No 476
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.09 E-value=0.012 Score=51.27 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.1
Q ss_pred eEEeCCCCCChHHHHHHHHHH
Q 012846 248 YLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~ 268 (455)
+.|.||+|+|||+|++++.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 679999999999999999865
No 477
>PRK13975 thymidylate kinase; Provisional
Probab=96.07 E-value=0.0084 Score=55.44 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCce
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDI 273 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~ 273 (455)
.-|.|.|++|+|||++++.+|+.++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3578999999999999999999998643
No 478
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.07 E-value=0.0067 Score=56.56 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
.+.-+.|.||+|+|||+|++.|+..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356789999999999999999999876
No 479
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.07 E-value=0.0077 Score=54.07 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=28.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAV 281 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~ 281 (455)
.-|.|.|.||+|||++|+++...| +.+++.++...+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 357899999999999999998776 677787776544
No 480
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.06 E-value=0.007 Score=55.63 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=26.7
Q ss_pred eEEeCCCCCChHHHHHHHHHHcC---CceEEeecccc
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLN---FDIYDLELSAV 281 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~---~~~~~l~~~~~ 281 (455)
+.+.|+||+|||++++.|+..++ .++..+++.++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 57899999999999999999874 45555555444
No 481
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.06 E-value=0.057 Score=64.59 Aligned_cols=91 Identities=16% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCCccc-ccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChH
Q 012846 207 PATFDT-LAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNS 285 (455)
Q Consensus 207 ~~~f~~-l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~ 285 (455)
+..+++ .+.-+.+++.+.+....+..+ +..+||-||.|+|||+++.-+|..++..+..++.-+..+-.
T Consensus 412 ~~~~~~~~i~T~~vq~~la~~~~a~~~~-----------~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~q 480 (1856)
T KOG1808|consen 412 LTSEATHYIITPRVQKNLADLARAISSG-----------KFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQ 480 (1856)
T ss_pred cccccceeeccHHHHHHHHHHHHHHhcC-----------CCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHH
Confidence 344555 566667777666655544332 34699999999999999999999999999988765543222
Q ss_pred HHH----------------HHHHhcCCceEEEEeccccc
Q 012846 286 ELR----------------RVLLSTGNRSILVVEDIDCS 308 (455)
Q Consensus 286 ~L~----------------~ll~~~~~~sIlliDeiD~l 308 (455)
++. .+...+.+++.+++|++...
T Consensus 481 eyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 481 EYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred HHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEecccccc
Confidence 211 12233446789999999754
No 482
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.05 E-value=0.011 Score=61.50 Aligned_cols=136 Identities=24% Similarity=0.284 Sum_probs=71.4
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--------ChHHHHHHHHh-----cCCceEEEEecccccccccc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--------SNSELRRVLLS-----TGNRSILVVEDIDCSLELED 313 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--------~~~~L~~ll~~-----~~~~sIlliDeiD~l~~~~~ 313 (455)
++||.|.|||.||-|.+-+-+-....+|.---+.-. -++.-+....+ .+.++|++|||+|.+-+ .+
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre-~D 444 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE-DD 444 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCc-hh
Confidence 489999999999999998877666666643211110 01111222111 23678999999998754 11
Q ss_pred ccCCCccccccCCCccchhhHhhHhhhhh-ccccCCCCceEEEEecCCC-----------CCCC--ccccCCCceeeEEE
Q 012846 314 RQAQPTTVNVLKPLRPMQVTLSGLLNFLD-GLWSSCGDERIIVFTTNHK-----------DRLD--PAVLRPGRMDVHIY 379 (455)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~ls~LL~~lD-g~~~~~~~~~iiI~tTN~~-----------~~LD--~aLlrpgR~d~~I~ 379 (455)
|-.-+.. ..+.|+|---.-+- -+.+. .-|+++.|.+ +.+| |.++. |||+..-
T Consensus 445 RVAIHEA--------MEQQTISIAKAGITT~LNSR----tSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFI 510 (729)
T KOG0481|consen 445 RVAIHEA--------MEQQTISIAKAGITTTLNSR----TSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFI 510 (729)
T ss_pred hhHHHHH--------HHhhhHHHhhhcceeeecch----hhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEE
Confidence 1111000 11222221111111 01122 2355666643 2333 78888 9999887
Q ss_pred eCCCCHHHH-HHHHHHHcC
Q 012846 380 MSYCTPCGF-DTLAANYLG 397 (455)
Q Consensus 380 ~~~p~~~~r-~~l~~~~l~ 397 (455)
+..-..+.+ ..|+++.+.
T Consensus 511 VKD~h~~~~D~~lAkHVI~ 529 (729)
T KOG0481|consen 511 VKDEHDEERDITLAKHVIN 529 (729)
T ss_pred EeccCcchhhhHHHHHhhh
Confidence 766555544 445555443
No 483
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.04 E-value=0.017 Score=60.47 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=26.5
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCCc
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNFD 272 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~~ 272 (455)
.|.-++++|+||+|||+++..+|..++..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 36778999999999999999999999985
No 484
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.04 E-value=0.012 Score=62.55 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=24.6
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
|.+.+..+|+.||||||||+|+..++...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~ 287 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENA 287 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67777779999999999999998887644
No 485
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.03 E-value=0.034 Score=53.47 Aligned_cols=62 Identities=16% Similarity=0.353 Sum_probs=39.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH-----cCCce----EE----------eeccc-cCC--------hHHHHHHHHhcCCc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY-----LNFDI----YD----------LELSA-VHS--------NSELRRVLLSTGNR 297 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~-----l~~~~----~~----------l~~~~-~~~--------~~~L~~ll~~~~~~ 297 (455)
+.++|+||...|||++.+.+|-. +|..+ .. +...+ +.. -.++..++.....+
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 67899999999999999999742 23211 11 11111 111 14667778888899
Q ss_pred eEEEEecccc
Q 012846 298 SILVVEDIDC 307 (455)
Q Consensus 298 sIlliDeiD~ 307 (455)
++|+|||+-.
T Consensus 124 sLvliDE~g~ 133 (235)
T PF00488_consen 124 SLVLIDELGR 133 (235)
T ss_dssp EEEEEESTTT
T ss_pred eeeecccccC
Confidence 9999999964
No 486
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.02 E-value=0.0047 Score=58.64 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.9
Q ss_pred eEEeCCCCCChHHHHHHHHHHc
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l 269 (455)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999884
No 487
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.02 E-value=0.0064 Score=56.73 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=27.5
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
-+.++|++|+|||++++.+++.+|+++++.+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 4789999999999999999998898888654
No 488
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.01 E-value=0.029 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.5
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|+||+|||+|+.++++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999863
No 489
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.01 E-value=0.016 Score=55.02 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=38.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHH-----HcCCc---------eEEeeccccC------C-h-------HHHHHHHHhcCCc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN-----YLNFD---------IYDLELSAVH------S-N-------SELRRVLLSTGNR 297 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~-----~l~~~---------~~~l~~~~~~------~-~-------~~L~~ll~~~~~~ 297 (455)
+-++|.||.|+|||++.+.++. ..+.. ++.--...+. . . .++..++....++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999863 22221 1110001111 0 0 2355666667799
Q ss_pred eEEEEeccc
Q 012846 298 SILVVEDID 306 (455)
Q Consensus 298 sIlliDeiD 306 (455)
++++|||..
T Consensus 111 ~llllDEp~ 119 (216)
T cd03284 111 SLVLLDEIG 119 (216)
T ss_pred eEEEEecCC
Confidence 999999984
No 490
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.00 E-value=0.0093 Score=55.97 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=26.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC-CceEEeecc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN-FDIYDLELS 279 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~-~~~~~l~~~ 279 (455)
+.-+.+.||+|+|||+|+++|+..++ ..+..++..
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 34688999999999999999999883 334444443
No 491
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.00 E-value=0.041 Score=48.75 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=18.5
Q ss_pred eEEeCCCCCChHHHHHHHHH
Q 012846 248 YLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~ 267 (455)
+++.|+||+|||+|+.++.+
T Consensus 3 i~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78899999999999999975
No 492
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.00 E-value=0.0052 Score=56.00 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
+-++|.||+|+|||++++.|++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 35889999999999999999997654
No 493
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.00 E-value=0.022 Score=58.36 Aligned_cols=62 Identities=23% Similarity=0.357 Sum_probs=40.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC-------CceEEeeccccC--------------------ChHHHHHHHHhcCCc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN-------FDIYDLELSAVH--------------------SNSELRRVLLSTGNR 297 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~-------~~~~~l~~~~~~--------------------~~~~L~~ll~~~~~~ 297 (455)
++-+.|.||.|+|||+..+-||.... .-++.+|.=-++ +..++...+......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56688999999999988777776543 334444433333 334555555555666
Q ss_pred eEEEEeccc
Q 012846 298 SILVVEDID 306 (455)
Q Consensus 298 sIlliDeiD 306 (455)
-+||+|=+-
T Consensus 283 d~ILVDTaG 291 (407)
T COG1419 283 DVILVDTAG 291 (407)
T ss_pred CEEEEeCCC
Confidence 788877664
No 494
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.99 E-value=0.0078 Score=60.15 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=29.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
+.-+++.||+|+|||+++..+|..++..++..|.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 3468999999999999999999999887766554
No 495
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.99 E-value=0.029 Score=59.73 Aligned_cols=85 Identities=25% Similarity=0.360 Sum_probs=53.9
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCce-eEEeCCCCCChHHHHHHHHHHcC---CceEEeec----
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMSNYLN---FDIYDLEL---- 278 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rg-iLL~GppGTGKT~la~aiA~~l~---~~~~~l~~---- 278 (455)
+.+++++.+.++..+.+...+. .+.| +|+.||+|+|||++..++.+++. .+++.++-
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 4578999888887776655432 1345 68999999999999998877764 34554421
Q ss_pred --ccc-----CC--hHHHHHHHHhc--CCceEEEEeccc
Q 012846 279 --SAV-----HS--NSELRRVLLST--GNRSILVVEDID 306 (455)
Q Consensus 279 --~~~-----~~--~~~L~~ll~~~--~~~sIlliDeiD 306 (455)
..+ .. .......+... ..|.||++.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 111 00 01122222222 479999999986
No 496
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.98 E-value=0.011 Score=59.55 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=26.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
+.-++|.||+|+|||+++..||..+ +..+..+++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4568899999999999999999876 344544443
No 497
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.97 E-value=0.033 Score=60.41 Aligned_cols=85 Identities=26% Similarity=0.419 Sum_probs=54.1
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCce-eEEeCCCCCChHHHHHHHHHHcC---CceEEeecc----
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMSNYLN---FDIYDLELS---- 279 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rg-iLL~GppGTGKT~la~aiA~~l~---~~~~~l~~~---- 279 (455)
.+++++.+.++..+.+.+.+.. +.| +|++||+|+|||++..++.++++ .+++.++-.
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 4689999988877777654421 234 68999999999999988887774 334433211
Q ss_pred --cc-----C--ChHHHHHHHHhc--CCceEEEEecccc
Q 012846 280 --AV-----H--SNSELRRVLLST--GNRSILVVEDIDC 307 (455)
Q Consensus 280 --~~-----~--~~~~L~~ll~~~--~~~sIlliDeiD~ 307 (455)
.+ . ........+... ..|.||++.||-.
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 11 0 011233333332 3799999999963
No 498
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.97 E-value=0.022 Score=57.29 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=37.6
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHcC---------CceEEeeccccCChHHHHHHHHh
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---------FDIYDLELSAVHSNSELRRVLLS 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l~---------~~~~~l~~~~~~~~~~L~~ll~~ 293 (455)
|.+...-+.++||||+|||+++..+|.... ..++.++.....+...+.++...
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~ 153 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAER 153 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 566666789999999999999998875321 25567776665555566666544
No 499
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.97 E-value=0.041 Score=63.03 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=41.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHH---cCCceEEeeccccC----------ChHHHHHHHHh-------cCCceEEEEeccc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY---LNFDIYDLELSAVH----------SNSELRRVLLS-------TGNRSILVVEDID 306 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~---l~~~~~~l~~~~~~----------~~~~L~~ll~~-------~~~~sIlliDeiD 306 (455)
-++|.|+||||||++.+++... .|+.++-+-++... ....+.+++.. .....||+|||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 4679999999999998887544 46777766544431 12345555432 1245799999997
Q ss_pred cc
Q 012846 307 CS 308 (455)
Q Consensus 307 ~l 308 (455)
.+
T Consensus 444 Mv 445 (988)
T PRK13889 444 MV 445 (988)
T ss_pred cC
Confidence 54
No 500
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.94 E-value=0.0097 Score=54.00 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=27.7
Q ss_pred eEEeCCCCCChHHHHHHHHHHc---CCceEEeecccc
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAV 281 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~ 281 (455)
+++.||||+|||+++..+|..+ +..+..+++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6889999999999999998765 566777776554
Done!