Query 012846
Match_columns 455
No_of_seqs 422 out of 2898
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:21:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2.7E-41 9.1E-46 343.3 21.2 212 206-426 143-363 (405)
2 4b4t_I 26S protease regulatory 100.0 6.2E-41 2.1E-45 341.6 22.8 215 203-426 174-397 (437)
3 4b4t_L 26S protease subunit RP 100.0 6.1E-40 2.1E-44 338.0 22.3 213 205-426 175-396 (437)
4 4b4t_M 26S protease regulatory 100.0 1.5E-40 5.2E-45 342.2 17.8 234 203-445 173-422 (434)
5 4b4t_K 26S protease regulatory 100.0 1.6E-39 5.4E-44 334.4 21.7 214 204-426 165-388 (428)
6 4b4t_H 26S protease regulatory 100.0 2.2E-39 7.6E-44 333.1 20.9 214 204-426 202-424 (467)
7 3cf2_A TER ATPase, transitiona 100.0 8E-35 2.7E-39 319.2 8.0 213 206-427 472-693 (806)
8 3cf2_A TER ATPase, transitiona 100.0 4.8E-33 1.6E-37 305.1 18.3 208 207-426 200-416 (806)
9 3cf0_A Transitional endoplasmi 100.0 3.5E-29 1.2E-33 247.5 20.8 213 205-426 9-230 (301)
10 2x8a_A Nuclear valosin-contain 100.0 6.7E-29 2.3E-33 242.5 20.1 208 207-426 6-227 (274)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.4E-27 4.7E-32 238.4 24.0 208 206-427 7-225 (322)
12 3h4m_A Proteasome-activating n 100.0 8.5E-28 2.9E-32 234.6 21.3 215 203-426 9-232 (285)
13 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.3E-27 4.5E-32 229.8 21.5 211 207-426 2-223 (262)
14 2ce7_A Cell division protein F 100.0 1.1E-27 3.7E-32 250.1 20.6 211 206-426 11-230 (476)
15 1lv7_A FTSH; alpha/beta domain 100.0 4.6E-27 1.6E-31 226.4 21.8 213 204-426 5-226 (257)
16 3eie_A Vacuolar protein sortin 100.0 2.5E-27 8.6E-32 236.3 19.2 210 203-426 10-229 (322)
17 2qp9_X Vacuolar protein sortin 99.9 1.5E-26 5.3E-31 233.8 19.1 209 205-427 45-263 (355)
18 3hu3_A Transitional endoplasmi 99.9 2.4E-26 8.2E-31 241.3 18.8 209 206-426 199-416 (489)
19 2zan_A Vacuolar protein sortin 99.9 5.7E-26 1.9E-30 236.3 19.6 209 205-427 128-347 (444)
20 2dhr_A FTSH; AAA+ protein, hex 99.9 2.5E-25 8.6E-30 233.4 21.4 211 206-426 26-245 (499)
21 2r62_A Cell division protease 99.9 7.1E-27 2.4E-31 226.2 8.5 213 206-426 6-227 (268)
22 3vfd_A Spastin; ATPase, microt 99.9 3.7E-25 1.3E-29 226.2 19.6 212 202-426 106-327 (389)
23 1ixz_A ATP-dependent metallopr 99.9 1.2E-24 4.3E-29 209.0 19.6 212 205-426 10-230 (254)
24 3d8b_A Fidgetin-like protein 1 99.9 7E-25 2.4E-29 221.8 17.6 209 205-426 78-296 (357)
25 3b9p_A CG5977-PA, isoform A; A 99.9 1.7E-24 5.9E-29 212.5 17.9 209 205-426 15-234 (297)
26 3t15_A Ribulose bisphosphate c 99.9 1.9E-25 6.6E-30 220.0 8.6 164 239-413 30-214 (293)
27 1iy2_A ATP-dependent metallopr 99.9 1.6E-23 5.6E-28 204.2 19.7 212 205-426 34-254 (278)
28 1ypw_A Transitional endoplasmi 99.9 8.4E-27 2.9E-31 258.7 -5.9 212 206-426 472-692 (806)
29 1ypw_A Transitional endoplasmi 99.9 2.5E-22 8.4E-27 222.9 17.0 208 206-425 199-415 (806)
30 3pfi_A Holliday junction ATP-d 99.8 5.8E-19 2E-23 176.2 20.3 191 203-424 21-226 (338)
31 2c9o_A RUVB-like 1; hexameric 99.8 2.1E-20 7.3E-25 194.9 9.3 171 207-385 33-226 (456)
32 1hqc_A RUVB; extended AAA-ATPa 99.8 3.7E-18 1.3E-22 169.0 19.7 191 204-425 5-211 (324)
33 3syl_A Protein CBBX; photosynt 99.8 1.1E-18 3.6E-23 171.9 13.7 178 210-407 29-228 (309)
34 1g41_A Heat shock protein HSLU 99.8 2.1E-19 7.2E-24 185.3 5.6 163 211-392 15-188 (444)
35 1ofh_A ATP-dependent HSL prote 99.8 8.5E-18 2.9E-22 164.8 16.3 174 211-395 15-214 (310)
36 3u61_B DNA polymerase accessor 99.7 2.2E-17 7.7E-22 163.8 15.6 154 203-396 18-178 (324)
37 1d2n_A N-ethylmaleimide-sensit 99.7 9.1E-17 3.1E-21 155.6 17.5 167 211-394 33-210 (272)
38 2chg_A Replication factor C sm 99.7 1.8E-16 6.2E-21 146.5 18.1 155 203-398 9-176 (226)
39 3hws_A ATP-dependent CLP prote 99.7 3.1E-18 1.1E-22 173.1 5.2 201 212-425 16-298 (363)
40 1sxj_A Activator 1 95 kDa subu 99.7 1.6E-16 5.6E-21 168.0 17.1 170 203-398 31-224 (516)
41 3uk6_A RUVB-like 2; hexameric 99.7 2.1E-16 7.2E-21 159.2 16.9 184 206-425 38-303 (368)
42 1njg_A DNA polymerase III subu 99.7 1E-15 3.5E-20 142.9 18.6 183 203-425 15-228 (250)
43 1jbk_A CLPB protein; beta barr 99.7 8.2E-17 2.8E-21 145.3 9.5 152 206-392 17-194 (195)
44 3m6a_A ATP-dependent protease 99.7 2.2E-16 7.4E-21 168.0 14.0 160 210-396 80-266 (543)
45 3pvs_A Replication-associated 99.7 1.5E-15 5.1E-20 157.7 19.1 151 204-398 19-180 (447)
46 2chq_A Replication factor C sm 99.7 7.3E-16 2.5E-20 151.5 14.2 160 203-403 9-181 (319)
47 4fcw_A Chaperone protein CLPB; 99.7 1.1E-15 3.9E-20 150.1 15.3 160 211-397 17-230 (311)
48 1sxj_B Activator 1 37 kDa subu 99.6 2.9E-15 9.8E-20 147.4 15.2 155 203-398 13-181 (323)
49 1um8_A ATP-dependent CLP prote 99.6 2E-15 6.7E-20 153.2 13.8 173 212-394 22-284 (376)
50 1iqp_A RFCS; clamp loader, ext 99.6 5.6E-15 1.9E-19 145.6 16.0 160 203-403 17-189 (327)
51 1l8q_A Chromosomal replication 99.6 1.7E-15 5.9E-20 150.3 12.2 184 204-421 4-204 (324)
52 1jr3_A DNA polymerase III subu 99.6 1.2E-14 4.1E-19 146.2 17.8 157 203-399 8-194 (373)
53 2r44_A Uncharacterized protein 99.6 3.9E-15 1.3E-19 148.1 14.0 153 208-398 24-200 (331)
54 3bos_A Putative DNA replicatio 99.6 1.9E-15 6.4E-20 142.1 10.9 161 204-399 21-190 (242)
55 2v1u_A Cell division control p 99.6 4.6E-15 1.6E-19 149.4 14.2 163 206-397 14-215 (387)
56 1sxj_D Activator 1 41 kDa subu 99.6 4.8E-15 1.6E-19 148.0 14.0 157 203-400 29-209 (353)
57 2p65_A Hypothetical protein PF 99.6 2.3E-15 7.9E-20 135.6 9.3 146 205-384 16-187 (187)
58 3pxi_A Negative regulator of g 99.6 8.1E-15 2.8E-19 161.9 15.2 158 211-397 491-676 (758)
59 1in4_A RUVB, holliday junction 99.6 8.1E-14 2.8E-18 139.3 20.8 192 203-425 17-223 (334)
60 2qby_B CDC6 homolog 3, cell di 99.6 2.3E-14 8E-19 144.6 16.3 151 211-397 20-211 (384)
61 1r6b_X CLPA protein; AAA+, N-t 99.6 1.6E-14 5.3E-19 159.6 15.0 154 212-397 459-667 (758)
62 3te6_A Regulatory protein SIR3 99.6 4.1E-14 1.4E-18 140.1 16.5 200 213-447 22-288 (318)
63 1sxj_E Activator 1 40 kDa subu 99.6 2.1E-14 7.1E-19 143.8 14.2 183 203-425 6-237 (354)
64 2z4s_A Chromosomal replication 99.6 1.7E-14 6E-19 149.5 13.6 159 204-397 98-277 (440)
65 2bjv_A PSP operon transcriptio 99.6 1E-13 3.5E-18 133.5 18.0 154 208-396 3-194 (265)
66 1g8p_A Magnesium-chelatase 38 99.5 3.6E-14 1.2E-18 141.6 14.6 153 205-395 18-231 (350)
67 2qby_A CDC6 homolog 1, cell di 99.5 8.8E-14 3E-18 139.7 16.5 161 206-397 15-211 (386)
68 1sxj_C Activator 1 40 kDa subu 99.5 6E-14 2E-18 140.3 13.4 156 203-399 17-185 (340)
69 3pxg_A Negative regulator of g 99.5 8.1E-14 2.8E-18 145.6 14.6 148 204-398 173-340 (468)
70 1qvr_A CLPB protein; coiled co 99.5 4E-14 1.4E-18 158.3 12.5 158 205-397 164-346 (854)
71 1fnn_A CDC6P, cell division co 99.5 2.9E-13 9.9E-18 136.6 17.6 160 208-397 14-207 (389)
72 1r6b_X CLPA protein; AAA+, N-t 99.5 1.2E-13 4E-18 152.6 15.0 158 205-396 180-362 (758)
73 3n70_A Transport activator; si 99.5 7E-14 2.4E-18 122.7 8.4 132 212-383 2-144 (145)
74 3pxi_A Negative regulator of g 99.5 6.2E-13 2.1E-17 146.8 17.4 147 205-398 174-340 (758)
75 1a5t_A Delta prime, HOLB; zinc 99.5 2.3E-12 8E-17 128.6 19.3 148 244-423 23-203 (334)
76 3co5_A Putative two-component 99.4 6.2E-14 2.1E-18 122.8 4.1 132 212-383 5-142 (143)
77 1qvr_A CLPB protein; coiled co 99.4 4.3E-13 1.5E-17 150.0 10.8 160 210-397 557-771 (854)
78 1ojl_A Transcriptional regulat 99.4 1.3E-12 4.5E-17 128.9 10.8 152 211-397 2-191 (304)
79 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.2E-11 4.2E-16 129.7 17.1 146 212-397 23-197 (500)
80 2gno_A DNA polymerase III, gam 99.3 7.5E-12 2.6E-16 123.5 12.6 123 245-397 18-153 (305)
81 3f9v_A Minichromosome maintena 99.3 3.6E-13 1.2E-17 144.6 1.1 128 247-398 329-492 (595)
82 3ec2_A DNA replication protein 99.3 4.7E-12 1.6E-16 114.6 7.4 95 206-308 5-112 (180)
83 4akg_A Glutathione S-transfera 99.3 2.8E-11 9.5E-16 146.9 16.1 137 245-397 1267-1432(2695)
84 1w5s_A Origin recognition comp 99.3 6E-11 2E-15 120.5 15.0 164 209-397 20-229 (412)
85 2w58_A DNAI, primosome compone 99.1 4.4E-11 1.5E-15 110.0 6.9 97 206-308 20-127 (202)
86 1svm_A Large T antigen; AAA+ f 99.1 9.1E-11 3.1E-15 118.8 7.2 121 240-382 164-284 (377)
87 2qgz_A Helicase loader, putati 99.0 1.9E-10 6.7E-15 113.5 5.4 96 207-308 120-226 (308)
88 3cmw_A Protein RECA, recombina 99.0 4.8E-10 1.6E-14 131.1 8.8 147 208-361 1017-1218(1706)
89 1tue_A Replication protein E1; 99.0 9.7E-10 3.3E-14 101.4 7.6 115 241-384 54-180 (212)
90 2fna_A Conserved hypothetical 98.9 2.4E-08 8.3E-13 98.7 16.4 175 209-425 11-250 (357)
91 2kjq_A DNAA-related protein; s 98.8 4.4E-09 1.5E-13 92.6 7.6 58 245-309 36-96 (149)
92 2r2a_A Uncharacterized protein 98.8 3.6E-09 1.2E-13 97.8 7.1 122 245-387 5-157 (199)
93 3k1j_A LON protease, ATP-depen 98.8 1.4E-09 4.9E-14 116.9 5.0 53 204-271 34-86 (604)
94 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.9E-09 6.6E-14 106.2 5.2 115 241-368 119-242 (331)
95 2qen_A Walker-type ATPase; unk 98.8 5.5E-07 1.9E-11 88.7 22.0 181 207-425 8-246 (350)
96 4akg_A Glutathione S-transfera 98.8 1.8E-08 6.1E-13 122.7 11.4 128 245-393 645-790 (2695)
97 3vkg_A Dynein heavy chain, cyt 98.8 1E-07 3.6E-12 116.8 17.6 134 245-396 1304-1469(3245)
98 3dzd_A Transcriptional regulat 98.7 2.9E-07 1E-11 92.9 16.2 152 212-397 130-317 (368)
99 1u0j_A DNA replication protein 98.7 9.4E-08 3.2E-12 91.8 11.6 59 243-308 102-160 (267)
100 1ny5_A Transcriptional regulat 98.6 4.4E-07 1.5E-11 92.2 14.7 153 210-397 136-326 (387)
101 3f8t_A Predicted ATPase involv 98.4 4E-07 1.4E-11 93.7 8.0 138 213-386 215-384 (506)
102 3vkg_A Dynein heavy chain, cyt 98.4 1.3E-06 4.4E-11 107.4 12.9 132 245-397 604-754 (3245)
103 3cmu_A Protein RECA, recombina 98.3 6.2E-07 2.1E-11 106.3 8.4 114 241-361 1423-1563(2050)
104 1ye8_A Protein THEP1, hypothet 98.1 1E-05 3.5E-10 73.0 9.1 27 247-273 2-28 (178)
105 1jr3_D DNA polymerase III, del 98.0 3.8E-05 1.3E-09 76.1 12.1 125 245-400 18-159 (343)
106 1z6t_A APAF-1, apoptotic prote 98.0 0.00011 3.8E-09 78.0 15.7 166 207-421 120-324 (591)
107 2cvh_A DNA repair and recombin 97.8 8.6E-05 2.9E-09 68.1 10.7 40 241-280 16-55 (220)
108 3sfz_A APAF-1, apoptotic pepti 97.8 0.00038 1.3E-08 79.8 16.7 165 206-419 119-322 (1249)
109 3hr8_A Protein RECA; alpha and 97.7 0.00014 4.9E-09 72.7 9.7 70 241-310 57-153 (356)
110 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00015 5.1E-09 66.8 9.2 29 241-269 19-47 (235)
111 1n0w_A DNA repair protein RAD5 97.6 0.00022 7.4E-09 66.4 10.0 40 241-280 20-68 (243)
112 3trf_A Shikimate kinase, SK; a 97.6 3.7E-05 1.3E-09 68.9 3.9 33 245-277 5-37 (185)
113 1qhx_A CPT, protein (chloramph 97.6 5.6E-05 1.9E-09 67.1 5.0 34 246-279 4-37 (178)
114 2z43_A DNA repair and recombin 97.6 8.9E-05 3.1E-09 73.1 7.0 40 241-280 103-151 (324)
115 1xp8_A RECA protein, recombina 97.5 0.00026 8.9E-09 71.1 9.9 70 241-310 70-166 (366)
116 3kb2_A SPBC2 prophage-derived 97.5 7.7E-05 2.6E-09 65.5 5.4 32 247-278 3-34 (173)
117 2zr9_A Protein RECA, recombina 97.5 0.00017 6E-09 72.0 8.2 70 241-310 57-153 (349)
118 1u94_A RECA protein, recombina 97.5 0.00019 6.6E-09 71.8 8.5 70 241-310 59-155 (356)
119 2rhm_A Putative kinase; P-loop 97.5 5.3E-05 1.8E-09 68.0 3.8 34 243-276 3-36 (193)
120 3vaa_A Shikimate kinase, SK; s 97.5 6.1E-05 2.1E-09 68.6 4.2 33 245-277 25-57 (199)
121 3cmu_A Protein RECA, recombina 97.5 0.00022 7.7E-09 84.8 9.7 72 241-312 1077-1175(2050)
122 1v5w_A DMC1, meiotic recombina 97.4 0.00031 1E-08 69.9 8.7 40 241-280 118-166 (343)
123 2a5y_B CED-4; apoptosis; HET: 97.4 0.0063 2.2E-07 64.2 18.7 162 214-422 131-334 (549)
124 1pzn_A RAD51, DNA repair and r 97.4 0.00032 1.1E-08 70.0 8.1 29 241-269 127-155 (349)
125 3iij_A Coilin-interacting nucl 97.4 9E-05 3.1E-09 66.1 3.6 33 245-277 11-43 (180)
126 2orw_A Thymidine kinase; TMTK, 97.4 9.8E-05 3.4E-09 66.8 3.8 31 246-276 4-37 (184)
127 4a74_A DNA repair and recombin 97.4 0.00027 9.1E-09 65.1 6.8 29 241-269 21-49 (231)
128 2iyv_A Shikimate kinase, SK; t 97.4 0.0001 3.4E-09 66.0 3.8 31 247-277 4-34 (184)
129 1via_A Shikimate kinase; struc 97.4 9.1E-05 3.1E-09 65.8 3.5 31 247-277 6-36 (175)
130 1zuh_A Shikimate kinase; alpha 97.3 0.00012 4.1E-09 64.5 3.9 32 246-277 8-39 (168)
131 1y63_A LMAJ004144AAA protein; 97.3 0.00011 3.9E-09 66.0 3.7 33 245-277 10-43 (184)
132 1kag_A SKI, shikimate kinase I 97.3 0.00017 5.8E-09 63.6 4.5 30 246-275 5-34 (173)
133 1gvn_B Zeta; postsegregational 97.3 0.00039 1.3E-08 67.4 7.2 35 244-278 32-66 (287)
134 2ehv_A Hypothetical protein PH 97.3 0.0007 2.4E-08 63.1 8.8 26 241-266 26-51 (251)
135 2cdn_A Adenylate kinase; phosp 97.3 0.00019 6.4E-09 65.3 4.5 33 245-277 20-52 (201)
136 2i1q_A DNA repair and recombin 97.2 0.00038 1.3E-08 68.3 6.7 28 241-268 94-121 (322)
137 1e6c_A Shikimate kinase; phosp 97.2 0.00015 5.1E-09 63.9 3.4 31 247-277 4-34 (173)
138 2ze6_A Isopentenyl transferase 97.2 0.00018 6.3E-09 68.3 4.2 33 247-279 3-35 (253)
139 3lw7_A Adenylate kinase relate 97.2 0.00017 5.9E-09 63.0 3.6 29 247-276 3-31 (179)
140 1tev_A UMP-CMP kinase; ploop, 97.2 0.00018 6E-09 64.5 3.5 32 245-276 3-34 (196)
141 3be4_A Adenylate kinase; malar 97.2 0.00017 5.8E-09 66.6 3.3 31 246-276 6-36 (217)
142 3io5_A Recombination and repai 97.2 0.0011 3.7E-08 65.1 9.1 69 241-310 25-125 (333)
143 1qf9_A UMP/CMP kinase, protein 97.2 0.00019 6.7E-09 64.1 3.6 33 244-276 5-37 (194)
144 2pt5_A Shikimate kinase, SK; a 97.2 0.00022 7.7E-09 62.5 3.7 31 247-277 2-32 (168)
145 3t61_A Gluconokinase; PSI-biol 97.2 0.00026 8.9E-09 64.4 4.2 33 245-277 18-50 (202)
146 3lda_A DNA repair protein RAD5 97.1 0.00079 2.7E-08 68.4 8.1 28 241-268 174-201 (400)
147 2c95_A Adenylate kinase 1; tra 97.1 0.00022 7.6E-09 64.0 3.6 33 245-277 9-41 (196)
148 1kht_A Adenylate kinase; phosp 97.1 0.0002 7E-09 63.9 3.2 30 246-275 4-38 (192)
149 3e1s_A Exodeoxyribonuclease V, 97.1 0.00098 3.3E-08 70.9 8.9 63 246-308 205-291 (574)
150 3cm0_A Adenylate kinase; ATP-b 97.1 0.00019 6.6E-09 64.0 2.9 31 246-276 5-35 (186)
151 2bwj_A Adenylate kinase 5; pho 97.1 0.00023 8E-09 64.1 3.4 33 245-277 12-44 (199)
152 3dl0_A Adenylate kinase; phosp 97.1 0.00026 8.9E-09 65.0 3.7 29 248-276 3-31 (216)
153 1ly1_A Polynucleotide kinase; 97.1 0.00016 5.3E-09 64.1 2.1 29 246-274 3-32 (181)
154 1zd8_A GTP:AMP phosphotransfer 97.1 0.00025 8.5E-09 65.9 3.4 32 245-276 7-38 (227)
155 1nlf_A Regulatory protein REPA 97.1 0.0012 4E-08 63.4 8.3 29 241-269 26-54 (279)
156 2p5t_B PEZT; postsegregational 97.1 0.00064 2.2E-08 64.4 6.3 38 244-281 31-68 (253)
157 1zp6_A Hypothetical protein AT 97.1 0.00027 9.1E-09 63.4 3.4 36 243-278 7-42 (191)
158 1aky_A Adenylate kinase; ATP:A 97.1 0.00031 1.1E-08 64.8 3.9 31 246-276 5-35 (220)
159 3fb4_A Adenylate kinase; psych 97.1 0.00029 9.8E-09 64.7 3.6 29 248-276 3-31 (216)
160 2vli_A Antibiotic resistance p 97.1 0.00031 1.1E-08 62.4 3.7 29 246-274 6-34 (183)
161 1knq_A Gluconate kinase; ALFA/ 97.0 0.00045 1.5E-08 61.1 4.2 31 246-276 9-39 (175)
162 1ak2_A Adenylate kinase isoenz 97.0 0.0004 1.4E-08 64.8 4.0 31 246-276 17-47 (233)
163 1ukz_A Uridylate kinase; trans 97.0 0.0004 1.4E-08 63.1 3.8 32 246-277 16-47 (203)
164 2pez_A Bifunctional 3'-phospho 97.0 0.0006 2.1E-08 60.6 4.9 34 245-278 5-41 (179)
165 1zak_A Adenylate kinase; ATP:A 97.0 0.00025 8.6E-09 65.5 2.3 32 245-276 5-36 (222)
166 1g5t_A COB(I)alamin adenosyltr 96.9 0.0026 8.9E-08 58.0 8.7 108 247-381 30-178 (196)
167 4eun_A Thermoresistant glucoki 96.9 0.00066 2.2E-08 61.7 4.6 31 245-275 29-59 (200)
168 2pbr_A DTMP kinase, thymidylat 96.9 0.00069 2.3E-08 60.6 4.6 32 247-278 2-36 (195)
169 3tlx_A Adenylate kinase 2; str 96.9 0.00053 1.8E-08 64.6 3.8 32 245-276 29-60 (243)
170 3crm_A TRNA delta(2)-isopenten 96.9 0.0006 2E-08 67.2 4.2 34 245-278 5-38 (323)
171 1e4v_A Adenylate kinase; trans 96.9 0.00045 1.6E-08 63.5 3.2 30 247-276 2-31 (214)
172 1vt4_I APAF-1 related killer D 96.9 0.0061 2.1E-07 68.6 12.6 55 214-280 131-191 (1221)
173 3umf_A Adenylate kinase; rossm 96.9 0.00075 2.6E-08 62.8 4.4 31 244-274 28-58 (217)
174 2bbw_A Adenylate kinase 4, AK4 96.8 0.00088 3E-08 62.9 4.5 31 245-275 27-57 (246)
175 2plr_A DTMP kinase, probable t 96.8 0.0016 5.5E-08 58.9 6.0 27 246-272 5-31 (213)
176 3upu_A ATP-dependent DNA helic 96.8 0.0016 5.6E-08 67.2 6.7 65 202-279 15-83 (459)
177 2xb4_A Adenylate kinase; ATP-b 96.8 0.00085 2.9E-08 62.2 4.1 29 248-276 3-31 (223)
178 2jaq_A Deoxyguanosine kinase; 96.7 0.00087 3E-08 60.4 3.9 29 247-275 2-30 (205)
179 2v54_A DTMP kinase, thymidylat 96.7 0.001 3.4E-08 60.2 4.2 33 246-278 5-38 (204)
180 2if2_A Dephospho-COA kinase; a 96.7 0.00068 2.3E-08 61.5 3.0 30 247-277 3-32 (204)
181 3sr0_A Adenylate kinase; phosp 96.7 0.00096 3.3E-08 61.5 4.0 28 248-275 3-30 (206)
182 2z0h_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 59.3 4.5 31 248-278 3-36 (197)
183 1cke_A CK, MSSA, protein (cyti 96.7 0.0011 3.9E-08 61.0 4.4 30 246-275 6-35 (227)
184 1nks_A Adenylate kinase; therm 96.7 0.00059 2E-08 60.9 2.4 24 247-270 3-26 (194)
185 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00066 2.3E-08 67.6 2.9 52 215-275 3-54 (359)
186 3ake_A Cytidylate kinase; CMP 96.7 0.00096 3.3E-08 60.4 3.6 31 247-277 4-34 (208)
187 3nwj_A ATSK2; P loop, shikimat 96.6 0.00099 3.4E-08 63.3 3.7 33 245-277 48-80 (250)
188 2zts_A Putative uncharacterize 96.6 0.0051 1.8E-07 57.0 8.4 49 241-291 26-78 (251)
189 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0015 5.1E-08 62.1 4.7 32 246-277 5-39 (260)
190 1jjv_A Dephospho-COA kinase; P 96.6 0.00091 3.1E-08 60.8 3.1 30 247-277 4-33 (206)
191 3r20_A Cytidylate kinase; stru 96.6 0.0014 4.9E-08 61.5 4.4 32 245-276 9-40 (233)
192 2grj_A Dephospho-COA kinase; T 96.6 0.0011 3.8E-08 60.3 3.4 32 246-277 13-44 (192)
193 2iut_A DNA translocase FTSK; n 96.6 0.015 5.2E-07 61.4 12.4 73 298-392 345-419 (574)
194 3uie_A Adenylyl-sulfate kinase 96.6 0.0019 6.7E-08 58.5 5.0 33 245-277 25-60 (200)
195 1g41_A Heat shock protein HSLU 96.5 0.01 3.5E-07 60.9 10.4 100 283-393 236-346 (444)
196 2wwf_A Thymidilate kinase, put 96.5 0.00071 2.4E-08 61.6 1.6 30 245-274 10-39 (212)
197 1uf9_A TT1252 protein; P-loop, 96.5 0.0014 4.7E-08 59.1 3.4 32 245-277 8-39 (203)
198 2b8t_A Thymidine kinase; deoxy 96.5 0.0061 2.1E-07 56.8 7.8 62 247-308 14-101 (223)
199 2fz4_A DNA repair protein RAD2 96.4 0.0065 2.2E-07 56.8 7.7 33 247-279 110-142 (237)
200 2r8r_A Sensor protein; KDPD, P 96.4 0.0025 8.7E-08 59.4 4.6 33 246-278 7-42 (228)
201 2h92_A Cytidylate kinase; ross 96.4 0.0019 6.5E-08 59.2 3.8 32 246-277 4-35 (219)
202 2qor_A Guanylate kinase; phosp 96.3 0.0023 7.8E-08 58.3 4.0 28 243-270 10-37 (204)
203 1kgd_A CASK, peripheral plasma 96.3 0.0024 8.2E-08 57.0 4.0 26 245-270 5-30 (180)
204 1vht_A Dephospho-COA kinase; s 96.3 0.002 6.8E-08 59.1 3.5 31 246-277 5-35 (218)
205 1nn5_A Similar to deoxythymidy 96.3 0.0012 3.9E-08 60.2 1.8 27 245-271 9-35 (215)
206 4gp7_A Metallophosphoesterase; 96.3 0.0054 1.8E-07 54.3 6.1 20 245-264 9-28 (171)
207 1kao_A RAP2A; GTP-binding prot 96.3 0.015 5.2E-07 49.6 8.9 22 247-268 5-26 (167)
208 4e22_A Cytidylate kinase; P-lo 96.3 0.0031 1.1E-07 59.6 4.8 30 246-275 28-57 (252)
209 4b3f_X DNA-binding protein smu 96.3 0.0059 2E-07 65.8 7.5 53 213-280 188-243 (646)
210 2qmh_A HPR kinase/phosphorylas 96.3 0.0019 6.5E-08 59.1 3.0 32 245-277 34-65 (205)
211 3foz_A TRNA delta(2)-isopenten 96.3 0.0027 9.2E-08 62.1 4.3 35 245-279 10-44 (316)
212 3cmw_A Protein RECA, recombina 96.3 0.0034 1.2E-07 74.0 5.7 114 239-358 1422-1565(1706)
213 3a8t_A Adenylate isopentenyltr 96.3 0.0021 7E-08 63.7 3.3 36 246-281 41-76 (339)
214 3zvl_A Bifunctional polynucleo 96.2 0.0043 1.5E-07 63.2 5.6 42 245-288 258-299 (416)
215 1q3t_A Cytidylate kinase; nucl 96.2 0.0035 1.2E-07 58.4 4.6 32 245-276 16-47 (236)
216 2bdt_A BH3686; alpha-beta prot 96.2 0.003 1E-07 56.5 3.8 25 247-271 4-28 (189)
217 1ltq_A Polynucleotide kinase; 96.2 0.0018 6.2E-08 62.4 2.5 30 246-275 3-33 (301)
218 1uj2_A Uridine-cytidine kinase 96.2 0.0029 9.9E-08 59.7 3.8 28 245-272 22-49 (252)
219 2yvu_A Probable adenylyl-sulfa 96.2 0.0049 1.7E-07 55.0 5.1 26 245-270 13-38 (186)
220 2ius_A DNA translocase FTSK; n 96.2 0.022 7.4E-07 59.5 10.7 41 351-393 332-374 (512)
221 2qt1_A Nicotinamide riboside k 96.2 0.002 6.8E-08 58.6 2.5 32 246-277 22-54 (207)
222 2dr3_A UPF0273 protein PH0284; 96.1 0.004 1.4E-07 57.7 4.6 38 241-278 19-59 (247)
223 1w4r_A Thymidine kinase; type 96.1 0.019 6.5E-07 52.2 8.6 32 246-277 21-55 (195)
224 3tau_A Guanylate kinase, GMP k 96.1 0.0034 1.2E-07 57.4 3.6 27 245-271 8-34 (208)
225 2j41_A Guanylate kinase; GMP, 96.0 0.0032 1.1E-07 56.8 3.4 25 245-269 6-30 (207)
226 1rz3_A Hypothetical protein rb 96.0 0.012 4.1E-07 53.3 7.2 35 245-279 22-59 (201)
227 2c9o_A RUVB-like 1; hexameric 96.0 0.0086 2.9E-07 61.7 6.9 72 297-397 296-380 (456)
228 3t1o_A Gliding protein MGLA; G 96.0 0.024 8.1E-07 50.0 8.9 24 246-269 15-38 (198)
229 1m7g_A Adenylylsulfate kinase; 96.0 0.0048 1.6E-07 56.4 4.4 33 245-277 25-61 (211)
230 3d3q_A TRNA delta(2)-isopenten 96.0 0.0035 1.2E-07 62.1 3.5 32 246-277 8-39 (340)
231 2f6r_A COA synthase, bifunctio 96.0 0.0035 1.2E-07 60.4 3.3 31 246-277 76-106 (281)
232 2gxq_A Heat resistant RNA depe 95.9 0.014 4.8E-07 52.5 7.0 23 246-268 39-62 (207)
233 2v3c_C SRP54, signal recogniti 95.9 0.016 5.6E-07 59.3 8.2 34 245-278 99-135 (432)
234 3fdi_A Uncharacterized protein 95.9 0.0047 1.6E-07 56.4 3.8 30 246-275 7-36 (201)
235 1ex7_A Guanylate kinase; subst 95.9 0.0052 1.8E-07 55.6 4.0 28 246-273 2-29 (186)
236 3exa_A TRNA delta(2)-isopenten 95.9 0.0044 1.5E-07 60.7 3.7 34 246-279 4-37 (322)
237 3c8u_A Fructokinase; YP_612366 95.9 0.008 2.7E-07 54.8 5.2 26 245-270 22-47 (208)
238 2ce2_X GTPase HRAS; signaling 95.9 0.022 7.6E-07 48.4 7.8 22 247-268 5-26 (166)
239 3tr0_A Guanylate kinase, GMP k 95.8 0.0057 1.9E-07 55.1 3.9 26 245-270 7-32 (205)
240 3kw6_A 26S protease regulatory 95.8 0.0071 2.4E-07 46.4 3.8 65 381-445 1-73 (78)
241 1u8z_A RAS-related protein RAL 95.8 0.03 1E-06 47.8 8.2 23 246-268 5-27 (168)
242 3b9q_A Chloroplast SRP recepto 95.7 0.0094 3.2E-07 58.1 5.4 53 217-269 70-124 (302)
243 1z0j_A RAB-22, RAS-related pro 95.7 0.013 4.6E-07 50.3 5.8 24 246-269 7-30 (170)
244 3a00_A Guanylate kinase, GMP k 95.7 0.0059 2E-07 54.7 3.5 25 246-270 2-26 (186)
245 3kl4_A SRP54, signal recogniti 95.7 0.012 4E-07 60.3 6.1 60 217-277 69-132 (433)
246 2a9k_A RAS-related protein RAL 95.7 0.036 1.2E-06 48.3 8.6 23 246-268 19-41 (187)
247 4dsu_A GTPase KRAS, isoform 2B 95.7 0.023 7.8E-07 49.8 7.3 22 247-268 6-27 (189)
248 2px0_A Flagellar biosynthesis 95.7 0.023 8E-07 55.0 7.9 59 245-303 105-189 (296)
249 1vec_A ATP-dependent RNA helic 95.7 0.019 6.4E-07 51.7 6.8 18 246-263 41-58 (206)
250 1c1y_A RAS-related protein RAP 95.7 0.028 9.4E-07 48.1 7.6 22 247-268 5-26 (167)
251 3bc1_A RAS-related protein RAB 95.6 0.025 8.6E-07 49.6 7.4 22 246-267 12-33 (195)
252 1r8s_A ADP-ribosylation factor 95.6 0.081 2.8E-06 45.0 10.5 22 247-268 2-23 (164)
253 3asz_A Uridine kinase; cytidin 95.6 0.0053 1.8E-07 55.8 2.8 30 246-275 7-38 (211)
254 2bov_A RAla, RAS-related prote 95.6 0.043 1.5E-06 48.8 8.9 23 246-268 15-37 (206)
255 2xau_A PRE-mRNA-splicing facto 95.6 0.031 1E-06 61.5 9.3 59 208-268 72-132 (773)
256 3dm5_A SRP54, signal recogniti 95.6 0.014 4.9E-07 59.8 6.1 61 217-278 73-136 (443)
257 1lvg_A Guanylate kinase, GMP k 95.5 0.0069 2.4E-07 55.0 3.3 26 245-270 4-29 (198)
258 1x6v_B Bifunctional 3'-phospho 95.5 0.01 3.4E-07 63.6 5.0 33 245-277 52-87 (630)
259 3q72_A GTP-binding protein RAD 95.5 0.015 5E-07 50.0 5.2 21 247-267 4-24 (166)
260 1ek0_A Protein (GTP-binding pr 95.5 0.016 5.4E-07 49.7 5.4 22 247-268 5-26 (170)
261 3ney_A 55 kDa erythrocyte memb 95.5 0.0099 3.4E-07 54.3 4.2 26 245-270 19-44 (197)
262 2og2_A Putative signal recogni 95.5 0.012 4.2E-07 58.7 5.2 53 217-269 127-181 (359)
263 2v9p_A Replication protein E1; 95.5 0.0092 3.2E-07 58.2 4.1 33 241-273 122-154 (305)
264 1nrj_B SR-beta, signal recogni 95.4 0.022 7.4E-07 51.7 6.3 25 245-269 12-36 (218)
265 2atv_A RERG, RAS-like estrogen 95.4 0.048 1.6E-06 48.5 8.5 24 245-268 28-51 (196)
266 3eph_A TRNA isopentenyltransfe 95.4 0.0082 2.8E-07 60.8 3.6 32 246-277 3-34 (409)
267 2efe_B Small GTP-binding prote 95.4 0.027 9.3E-07 49.0 6.6 23 246-268 13-35 (181)
268 3gmt_A Adenylate kinase; ssgci 95.4 0.0084 2.9E-07 56.1 3.3 30 247-276 10-39 (230)
269 1c9k_A COBU, adenosylcobinamid 95.4 0.0082 2.8E-07 54.0 3.1 33 248-281 2-34 (180)
270 4eaq_A DTMP kinase, thymidylat 95.3 0.011 3.6E-07 55.2 4.0 31 246-276 27-59 (229)
271 1htw_A HI0065; nucleotide-bind 95.3 0.012 4E-07 51.7 4.1 27 243-269 31-57 (158)
272 2yhs_A FTSY, cell division pro 95.3 0.013 4.5E-07 60.8 5.0 25 245-269 293-317 (503)
273 1cr0_A DNA primase/helicase; R 95.3 0.0092 3.1E-07 57.4 3.6 29 241-269 31-59 (296)
274 3bh0_A DNAB-like replicative h 95.3 0.028 9.6E-07 54.9 7.1 39 241-279 64-105 (315)
275 2nzj_A GTP-binding protein REM 95.3 0.024 8.2E-07 49.0 5.9 22 246-267 5-26 (175)
276 1z6g_A Guanylate kinase; struc 95.3 0.01 3.5E-07 54.7 3.6 25 245-269 23-47 (218)
277 1r2q_A RAS-related protein RAB 95.3 0.021 7.2E-07 48.9 5.4 22 246-267 7-28 (170)
278 3con_A GTPase NRAS; structural 95.3 0.028 9.6E-07 49.6 6.4 22 247-268 23-44 (190)
279 2oil_A CATX-8, RAS-related pro 95.2 0.027 9.1E-07 49.9 6.2 23 246-268 26-48 (193)
280 1z0f_A RAB14, member RAS oncog 95.2 0.036 1.2E-06 48.0 6.9 23 246-268 16-38 (179)
281 3tkl_A RAS-related protein RAB 95.2 0.029 9.9E-07 49.6 6.3 23 246-268 17-39 (196)
282 1znw_A Guanylate kinase, GMP k 95.2 0.012 4E-07 53.6 3.7 26 245-270 20-45 (207)
283 1x3s_A RAS-related protein RAB 95.2 0.039 1.3E-06 48.6 7.1 23 246-268 16-38 (195)
284 1gtv_A TMK, thymidylate kinase 95.2 0.0038 1.3E-07 56.7 0.4 25 247-271 2-26 (214)
285 1s96_A Guanylate kinase, GMP k 95.2 0.013 4.3E-07 54.4 3.8 28 243-270 14-41 (219)
286 1vma_A Cell division protein F 95.1 0.015 5.1E-07 56.8 4.5 59 219-278 79-140 (306)
287 2erx_A GTP-binding protein DI- 95.1 0.029 1E-06 48.1 5.9 21 247-267 5-25 (172)
288 3kkq_A RAS-related protein M-R 95.1 0.035 1.2E-06 48.5 6.5 23 246-268 19-41 (183)
289 1odf_A YGR205W, hypothetical 3 95.1 0.015 5.3E-07 56.2 4.4 26 245-270 31-56 (290)
290 3hdt_A Putative kinase; struct 95.1 0.011 3.8E-07 55.0 3.2 30 246-275 15-44 (223)
291 2gk6_A Regulator of nonsense t 95.0 0.019 6.4E-07 61.6 5.3 24 246-269 196-219 (624)
292 1hv8_A Putative ATP-dependent 95.0 0.063 2.2E-06 52.2 8.7 56 208-266 6-65 (367)
293 1zu4_A FTSY; GTPase, signal re 95.0 0.031 1E-06 54.9 6.3 36 244-279 104-142 (320)
294 1p9r_A General secretion pathw 95.0 0.032 1.1E-06 56.8 6.6 50 207-270 143-192 (418)
295 3tqf_A HPR(Ser) kinase; transf 94.9 0.013 4.3E-07 52.4 2.9 24 245-268 16-39 (181)
296 3lxx_A GTPase IMAP family memb 94.9 0.069 2.4E-06 49.4 8.2 23 246-268 30-52 (239)
297 2eyu_A Twitching motility prot 94.9 0.017 5.8E-07 55.0 4.0 25 245-269 25-49 (261)
298 3b6e_A Interferon-induced heli 94.9 0.014 4.9E-07 52.6 3.3 23 246-268 49-71 (216)
299 3q85_A GTP-binding protein REM 94.9 0.043 1.5E-06 47.1 6.2 20 247-266 4-23 (169)
300 1wb9_A DNA mismatch repair pro 94.8 0.051 1.7E-06 59.9 8.1 24 245-268 607-630 (800)
301 3e70_C DPA, signal recognition 94.8 0.033 1.1E-06 54.8 6.0 26 244-269 128-153 (328)
302 3dz8_A RAS-related protein RAB 94.8 0.033 1.1E-06 49.3 5.6 24 246-269 24-47 (191)
303 2jeo_A Uridine-cytidine kinase 94.8 0.017 5.8E-07 54.0 3.7 27 246-272 26-52 (245)
304 2i3b_A HCR-ntpase, human cance 94.8 0.016 5.4E-07 52.4 3.3 23 247-269 3-25 (189)
305 3fe2_A Probable ATP-dependent 94.8 0.034 1.2E-06 51.6 5.7 52 208-262 29-83 (242)
306 2axn_A 6-phosphofructo-2-kinas 94.8 0.018 6.2E-07 60.4 4.1 26 245-270 35-60 (520)
307 1a7j_A Phosphoribulokinase; tr 94.7 0.0094 3.2E-07 57.7 1.8 37 246-282 6-45 (290)
308 3pey_A ATP-dependent RNA helic 94.7 0.11 3.7E-06 51.1 9.5 56 208-263 5-62 (395)
309 1np6_A Molybdopterin-guanine d 94.7 0.02 6.8E-07 51.1 3.7 25 245-269 6-30 (174)
310 3thx_A DNA mismatch repair pro 94.7 0.06 2E-06 60.3 8.3 22 245-266 662-683 (934)
311 1fzq_A ADP-ribosylation factor 94.7 0.15 5E-06 44.8 9.4 24 245-268 16-39 (181)
312 2fn4_A P23, RAS-related protei 94.7 0.054 1.8E-06 46.9 6.5 23 246-268 10-32 (181)
313 1zd9_A ADP-ribosylation factor 94.6 0.095 3.3E-06 46.2 8.1 22 247-268 24-45 (188)
314 2j37_W Signal recognition part 94.6 0.035 1.2E-06 57.9 5.9 34 245-278 101-137 (504)
315 3thx_B DNA mismatch repair pro 94.6 0.052 1.8E-06 60.6 7.6 25 243-267 671-695 (918)
316 3tqc_A Pantothenate kinase; bi 94.6 0.042 1.4E-06 53.9 6.1 25 246-270 93-117 (321)
317 1z06_A RAS-related protein RAB 94.6 0.064 2.2E-06 47.3 6.8 22 246-267 21-42 (189)
318 2ewv_A Twitching motility prot 94.6 0.023 7.7E-07 57.0 4.2 27 243-269 134-160 (372)
319 2b6h_A ADP-ribosylation factor 94.5 0.092 3.1E-06 46.7 7.7 23 245-267 29-51 (192)
320 3lnc_A Guanylate kinase, GMP k 94.5 0.012 4.1E-07 54.4 1.9 26 245-270 27-53 (231)
321 2p5s_A RAS and EF-hand domain 94.5 0.06 2.1E-06 48.0 6.5 23 245-267 28-50 (199)
322 2hup_A RAS-related protein RAB 94.5 0.07 2.4E-06 47.8 6.9 22 246-267 30-51 (201)
323 2f7s_A C25KG, RAS-related prot 94.5 0.075 2.6E-06 47.9 7.2 22 246-267 26-47 (217)
324 2hxs_A RAB-26, RAS-related pro 94.5 0.047 1.6E-06 47.3 5.5 22 246-267 7-28 (178)
325 2wjy_A Regulator of nonsense t 94.4 0.032 1.1E-06 61.6 5.3 23 247-269 373-395 (800)
326 2r6a_A DNAB helicase, replicat 94.4 0.039 1.4E-06 56.6 5.7 38 241-278 199-240 (454)
327 1zbd_A Rabphilin-3A; G protein 94.4 0.056 1.9E-06 48.2 6.0 23 246-268 9-31 (203)
328 1m8p_A Sulfate adenylyltransfe 94.3 0.025 8.6E-07 60.0 4.1 33 246-278 397-433 (573)
329 1rj9_A FTSY, signal recognitio 94.3 0.028 9.5E-07 54.8 4.0 25 245-269 102-126 (304)
330 2gf0_A GTP-binding protein DI- 94.3 0.058 2E-06 47.7 5.9 22 246-267 9-30 (199)
331 3jvv_A Twitching mobility prot 94.3 0.02 7E-07 57.0 3.1 23 247-269 125-147 (356)
332 2ged_A SR-beta, signal recogni 94.3 0.021 7.2E-07 50.5 2.9 25 244-268 47-71 (193)
333 1sky_E F1-ATPase, F1-ATP synth 94.3 0.057 2E-06 55.6 6.4 24 246-269 152-175 (473)
334 2q6t_A DNAB replication FORK h 94.3 0.039 1.3E-06 56.5 5.2 38 241-278 196-237 (444)
335 3oes_A GTPase rhebl1; small GT 94.2 0.038 1.3E-06 49.5 4.5 23 246-268 25-47 (201)
336 4edh_A DTMP kinase, thymidylat 94.2 0.027 9.3E-07 51.9 3.5 31 246-276 7-40 (213)
337 2h57_A ADP-ribosylation factor 94.2 0.021 7.3E-07 50.5 2.7 24 246-269 22-45 (190)
338 4i1u_A Dephospho-COA kinase; s 94.2 0.028 9.7E-07 51.7 3.5 31 247-278 11-41 (210)
339 2oap_1 GSPE-2, type II secreti 94.2 0.017 5.9E-07 60.4 2.4 62 245-306 260-343 (511)
340 2fh5_B SR-beta, signal recogni 94.1 0.051 1.8E-06 49.0 5.2 24 245-268 7-30 (214)
341 3kta_A Chromosome segregation 94.1 0.026 8.7E-07 49.9 3.1 24 247-270 28-51 (182)
342 3tmk_A Thymidylate kinase; pho 94.1 0.065 2.2E-06 49.5 5.9 29 246-274 6-34 (216)
343 2krk_A 26S protease regulatory 94.1 0.027 9.3E-07 44.1 2.8 48 379-426 7-55 (86)
344 4dkx_A RAS-related protein RAB 94.1 0.061 2.1E-06 49.5 5.7 21 247-267 15-35 (216)
345 3aez_A Pantothenate kinase; tr 94.1 0.031 1.1E-06 54.6 3.9 26 245-270 90-115 (312)
346 2xxa_A Signal recognition part 94.1 0.045 1.6E-06 56.0 5.2 37 244-280 99-139 (433)
347 1zj6_A ADP-ribosylation factor 94.1 0.12 4.2E-06 45.3 7.5 23 245-267 16-38 (187)
348 3v9p_A DTMP kinase, thymidylat 94.0 0.038 1.3E-06 51.4 4.1 30 247-276 27-63 (227)
349 1j8m_F SRP54, signal recogniti 94.0 0.065 2.2E-06 51.9 5.9 35 245-279 98-135 (297)
350 1sq5_A Pantothenate kinase; P- 94.0 0.028 9.6E-07 54.7 3.3 25 246-270 81-105 (308)
351 2ocp_A DGK, deoxyguanosine kin 94.0 0.04 1.4E-06 51.2 4.2 25 246-270 3-27 (241)
352 1p5z_B DCK, deoxycytidine kina 93.9 0.013 4.4E-07 55.4 0.8 25 246-270 25-49 (263)
353 1z2a_A RAS-related protein RAB 93.9 0.028 9.7E-07 48.0 2.9 23 246-268 6-28 (168)
354 1xjc_A MOBB protein homolog; s 93.9 0.034 1.2E-06 49.4 3.4 32 246-277 5-39 (169)
355 2il1_A RAB12; G-protein, GDP, 93.9 0.054 1.8E-06 48.1 4.8 22 246-267 27-48 (192)
356 2fg5_A RAB-22B, RAS-related pr 93.9 0.045 1.5E-06 48.6 4.3 23 246-268 24-46 (192)
357 1ewq_A DNA mismatch repair pro 93.8 0.15 5.1E-06 55.9 9.0 24 245-268 576-599 (765)
358 1bif_A 6-phosphofructo-2-kinas 93.8 0.018 6.2E-07 59.4 1.7 27 245-271 39-65 (469)
359 2dyk_A GTP-binding protein; GT 93.8 0.033 1.1E-06 47.3 3.1 22 247-268 3-24 (161)
360 2xzl_A ATP-dependent helicase 93.8 0.044 1.5E-06 60.5 4.7 22 247-268 377-398 (802)
361 2f9l_A RAB11B, member RAS onco 93.7 0.033 1.1E-06 49.8 3.1 22 247-268 7-28 (199)
362 2j0s_A ATP-dependent RNA helic 93.7 0.15 5.1E-06 50.7 8.2 53 208-263 37-92 (410)
363 3b85_A Phosphate starvation-in 93.7 0.032 1.1E-06 51.2 3.0 23 246-268 23-45 (208)
364 3bgw_A DNAB-like replicative h 93.7 0.054 1.8E-06 55.6 4.9 39 241-279 193-234 (444)
365 4a1f_A DNAB helicase, replicat 93.7 0.06 2.1E-06 53.2 5.0 38 241-278 42-82 (338)
366 1oix_A RAS-related protein RAB 93.6 0.033 1.1E-06 49.7 2.8 23 247-269 31-53 (191)
367 1w36_D RECD, exodeoxyribonucle 93.5 0.037 1.3E-06 59.1 3.5 24 246-269 165-188 (608)
368 4f4c_A Multidrug resistance pr 93.5 0.16 5.5E-06 59.1 8.9 28 243-270 442-469 (1321)
369 1q57_A DNA primase/helicase; d 93.4 0.046 1.6E-06 56.9 3.9 39 241-279 238-280 (503)
370 2pt7_A CAG-ALFA; ATPase, prote 93.4 0.046 1.6E-06 53.8 3.8 26 245-270 171-196 (330)
371 3eiq_A Eukaryotic initiation f 93.4 0.15 5.1E-06 50.6 7.6 52 208-262 40-94 (414)
372 3tif_A Uncharacterized ABC tra 93.4 0.035 1.2E-06 51.8 2.7 26 245-270 31-56 (235)
373 2qe7_A ATP synthase subunit al 93.4 0.2 6.9E-06 51.8 8.6 60 248-307 165-230 (502)
374 2zj8_A DNA helicase, putative 93.4 0.27 9.3E-06 53.3 10.2 18 245-262 39-56 (720)
375 2cbz_A Multidrug resistance-as 93.3 0.036 1.2E-06 51.8 2.7 25 245-269 31-55 (237)
376 3llu_A RAS-related GTP-binding 93.3 0.14 4.9E-06 45.4 6.7 23 246-268 21-43 (196)
377 3ice_A Transcription terminati 93.3 0.21 7.2E-06 50.2 8.3 25 245-269 174-198 (422)
378 2ffh_A Protein (FFH); SRP54, s 93.3 0.13 4.4E-06 52.5 6.8 34 245-278 98-134 (425)
379 2gza_A Type IV secretion syste 93.2 0.056 1.9E-06 53.9 4.1 26 245-270 175-200 (361)
380 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.047 1.6E-06 47.2 3.1 23 246-268 8-30 (177)
381 2wji_A Ferrous iron transport 93.2 0.044 1.5E-06 47.4 2.9 21 247-267 5-25 (165)
382 1z08_A RAS-related protein RAB 93.2 0.049 1.7E-06 46.7 3.2 23 246-268 7-29 (170)
383 2www_A Methylmalonic aciduria 93.2 0.16 5.3E-06 50.3 7.2 24 246-269 75-98 (349)
384 2pcj_A ABC transporter, lipopr 93.2 0.032 1.1E-06 51.7 2.1 26 245-270 30-55 (224)
385 2onk_A Molybdate/tungstate ABC 93.2 0.043 1.5E-06 51.5 3.0 25 246-270 25-49 (240)
386 3p32_A Probable GTPase RV1496/ 93.2 0.068 2.3E-06 53.0 4.6 31 246-276 80-113 (355)
387 1lw7_A Transcriptional regulat 93.2 0.039 1.3E-06 54.9 2.8 28 245-272 170-197 (365)
388 1ky3_A GTP-binding protein YPT 93.1 0.05 1.7E-06 47.2 3.1 23 246-268 9-31 (182)
389 1g16_A RAS-related protein SEC 93.1 0.044 1.5E-06 46.9 2.7 23 246-268 4-26 (170)
390 3sop_A Neuronal-specific septi 93.1 0.043 1.5E-06 52.4 2.9 24 247-270 4-27 (270)
391 2o8b_B DNA mismatch repair pro 93.1 0.17 5.7E-06 57.3 8.0 22 245-266 789-810 (1022)
392 1f2t_A RAD50 ABC-ATPase; DNA d 93.1 0.046 1.6E-06 47.2 2.7 23 247-269 25-47 (149)
393 2pze_A Cystic fibrosis transme 93.0 0.034 1.1E-06 51.7 1.9 26 245-270 34-59 (229)
394 1fx0_A ATP synthase alpha chai 93.0 0.19 6.4E-06 52.1 7.6 60 248-307 166-231 (507)
395 3t34_A Dynamin-related protein 92.9 0.42 1.5E-05 47.1 10.0 21 247-267 36-56 (360)
396 4hlc_A DTMP kinase, thymidylat 92.9 0.1 3.6E-06 47.5 5.1 29 248-276 5-35 (205)
397 1b0u_A Histidine permease; ABC 92.9 0.046 1.6E-06 52.0 2.8 26 245-270 32-57 (262)
398 2zej_A Dardarin, leucine-rich 92.9 0.043 1.5E-06 48.4 2.5 21 247-267 4-24 (184)
399 1g8f_A Sulfate adenylyltransfe 92.9 0.067 2.3E-06 55.8 4.2 26 246-271 396-421 (511)
400 1mv5_A LMRA, multidrug resista 92.9 0.044 1.5E-06 51.4 2.5 25 245-269 28-52 (243)
401 3b1v_A Ferrous iron uptake tra 92.8 0.16 5.6E-06 48.3 6.5 21 247-267 5-25 (272)
402 3lv8_A DTMP kinase, thymidylat 92.8 0.051 1.7E-06 50.9 2.8 25 246-270 28-52 (236)
403 2lkc_A Translation initiation 92.8 0.065 2.2E-06 46.3 3.4 23 245-267 8-30 (178)
404 1sgw_A Putative ABC transporte 92.8 0.043 1.5E-06 50.5 2.3 26 245-270 35-60 (214)
405 2wjg_A FEOB, ferrous iron tran 92.8 0.049 1.7E-06 47.8 2.6 23 246-268 8-30 (188)
406 1upt_A ARL1, ADP-ribosylation 92.7 0.06 2E-06 46.2 3.1 22 246-267 8-29 (171)
407 2zu0_C Probable ATP-dependent 92.7 0.06 2E-06 51.3 3.3 24 245-268 46-69 (267)
408 3clv_A RAB5 protein, putative; 92.7 0.06 2E-06 47.4 3.1 23 246-268 8-30 (208)
409 2ghi_A Transport protein; mult 92.7 0.05 1.7E-06 51.6 2.7 25 245-269 46-70 (260)
410 1tf7_A KAIC; homohexamer, hexa 92.7 0.051 1.7E-06 56.9 3.0 29 241-269 277-305 (525)
411 2y8e_A RAB-protein 6, GH09086P 92.7 0.054 1.8E-06 46.8 2.7 23 246-268 15-37 (179)
412 1g6h_A High-affinity branched- 92.7 0.045 1.5E-06 51.8 2.3 25 245-269 33-57 (257)
413 2r9v_A ATP synthase subunit al 92.7 0.18 6E-06 52.3 6.9 61 247-307 177-243 (515)
414 2olj_A Amino acid ABC transpor 92.6 0.053 1.8E-06 51.6 2.8 26 245-270 50-75 (263)
415 2qi9_C Vitamin B12 import ATP- 92.6 0.04 1.4E-06 52.0 1.9 26 245-270 26-51 (249)
416 2d2e_A SUFC protein; ABC-ATPas 92.6 0.055 1.9E-06 50.9 2.9 24 245-268 29-52 (250)
417 2ixe_A Antigen peptide transpo 92.6 0.054 1.8E-06 51.8 2.7 26 245-270 45-70 (271)
418 2ff7_A Alpha-hemolysin translo 92.5 0.049 1.7E-06 51.3 2.3 25 245-269 35-59 (247)
419 3fmp_B ATP-dependent RNA helic 92.4 0.56 1.9E-05 47.9 10.5 52 208-261 92-147 (479)
420 1vpl_A ABC transporter, ATP-bi 92.4 0.059 2E-06 51.1 2.8 25 245-269 41-65 (256)
421 3cr8_A Sulfate adenylyltranfer 92.4 0.046 1.6E-06 57.7 2.2 25 246-270 370-394 (552)
422 3gfo_A Cobalt import ATP-bindi 92.4 0.052 1.8E-06 52.0 2.4 25 245-269 34-58 (275)
423 1ji0_A ABC transporter; ATP bi 92.4 0.052 1.8E-06 50.8 2.3 26 245-270 32-57 (240)
424 3tw8_B RAS-related protein RAB 92.4 0.065 2.2E-06 46.3 2.8 22 246-267 10-31 (181)
425 2bme_A RAB4A, RAS-related prot 92.4 0.062 2.1E-06 46.9 2.7 23 246-268 11-33 (186)
426 3iby_A Ferrous iron transport 92.3 0.15 5.3E-06 48.0 5.6 22 247-268 3-24 (256)
427 1m7b_A RND3/RHOE small GTP-bin 92.3 0.063 2.1E-06 47.2 2.7 23 246-268 8-30 (184)
428 1svi_A GTP-binding protein YSX 92.3 0.07 2.4E-06 47.0 3.0 23 245-267 23-45 (195)
429 3ld9_A DTMP kinase, thymidylat 92.3 0.071 2.4E-06 49.5 3.2 30 246-275 22-55 (223)
430 4tmk_A Protein (thymidylate ki 92.3 0.066 2.2E-06 49.3 2.9 23 247-269 5-27 (213)
431 1yrb_A ATP(GTP)binding protein 92.3 0.11 3.9E-06 48.4 4.6 32 246-277 15-48 (262)
432 2yz2_A Putative ABC transporte 92.3 0.061 2.1E-06 51.2 2.7 25 245-269 33-57 (266)
433 2wsm_A Hydrogenase expression/ 92.3 0.067 2.3E-06 48.5 2.9 25 246-270 31-55 (221)
434 1tf7_A KAIC; homohexamer, hexa 92.3 0.06 2.1E-06 56.3 2.9 24 242-265 36-59 (525)
435 2f1r_A Molybdopterin-guanine d 92.3 0.036 1.2E-06 49.2 1.0 24 247-270 4-27 (171)
436 2ihy_A ABC transporter, ATP-bi 92.3 0.051 1.7E-06 52.2 2.1 25 245-269 47-71 (279)
437 3vkw_A Replicase large subunit 92.2 0.1 3.5E-06 53.4 4.4 24 245-268 161-184 (446)
438 2g6b_A RAS-related protein RAB 92.2 0.076 2.6E-06 46.0 3.1 23 246-268 11-33 (180)
439 4g1u_C Hemin import ATP-bindin 92.2 0.058 2E-06 51.4 2.5 25 245-269 37-61 (266)
440 2gf9_A RAS-related protein RAB 92.2 0.076 2.6E-06 46.8 3.1 23 246-268 23-45 (189)
441 1mh1_A RAC1; GTP-binding, GTPa 92.2 0.074 2.5E-06 46.3 2.9 23 246-268 6-28 (186)
442 2nq2_C Hypothetical ABC transp 92.1 0.059 2E-06 50.9 2.3 25 245-269 31-55 (253)
443 2qm8_A GTPase/ATPase; G protei 92.1 0.092 3.1E-06 51.8 3.8 24 246-269 56-79 (337)
444 1tq4_A IIGP1, interferon-induc 92.0 0.13 4.6E-06 52.1 5.0 22 247-268 71-92 (413)
445 2obl_A ESCN; ATPase, hydrolase 92.0 0.11 3.6E-06 51.6 4.2 30 245-274 71-100 (347)
446 1ko7_A HPR kinase/phosphatase; 92.0 0.092 3.1E-06 51.3 3.6 28 245-273 144-171 (314)
447 3fvq_A Fe(3+) IONS import ATP- 92.0 0.071 2.4E-06 53.1 2.9 25 245-269 30-54 (359)
448 2db3_A ATP-dependent RNA helic 92.0 0.46 1.6E-05 48.0 9.1 51 208-261 56-109 (434)
449 3bwd_D RAC-like GTP-binding pr 92.0 0.085 2.9E-06 45.8 3.1 23 246-268 9-31 (182)
450 3c5c_A RAS-like protein 12; GD 91.9 0.086 2.9E-06 46.6 3.1 22 247-268 23-44 (187)
451 1knx_A Probable HPR(Ser) kinas 91.9 0.067 2.3E-06 52.2 2.5 29 245-274 147-175 (312)
452 2gj8_A MNME, tRNA modification 91.9 0.071 2.4E-06 46.6 2.5 23 246-268 5-27 (172)
453 2it1_A 362AA long hypothetical 91.9 0.083 2.8E-06 52.7 3.3 25 245-269 29-53 (362)
454 1m2o_B GTP-binding protein SAR 91.9 0.076 2.6E-06 47.1 2.7 22 246-267 24-45 (190)
455 1vg8_A RAS-related protein RAB 91.9 0.087 3E-06 46.9 3.1 23 246-268 9-31 (207)
456 2iwr_A Centaurin gamma 1; ANK 91.9 0.067 2.3E-06 46.4 2.3 23 246-268 8-30 (178)
457 2yyz_A Sugar ABC transporter, 91.8 0.085 2.9E-06 52.6 3.2 25 245-269 29-53 (359)
458 2cxx_A Probable GTP-binding pr 91.8 0.068 2.3E-06 46.8 2.3 22 247-268 3-24 (190)
459 1v43_A Sugar-binding transport 91.8 0.086 3E-06 52.8 3.3 25 245-269 37-61 (372)
460 2a5j_A RAS-related protein RAB 91.8 0.09 3.1E-06 46.4 3.1 22 247-268 23-44 (191)
461 1z47_A CYSA, putative ABC-tran 91.8 0.077 2.6E-06 52.8 2.9 25 245-269 41-65 (355)
462 3ihw_A Centg3; RAS, centaurin, 91.8 0.094 3.2E-06 46.3 3.2 22 247-268 22-43 (184)
463 1moz_A ARL1, ADP-ribosylation 91.7 0.088 3E-06 45.8 2.9 22 245-266 18-39 (183)
464 2pjz_A Hypothetical protein ST 91.7 0.077 2.6E-06 50.5 2.7 25 245-269 30-54 (263)
465 3rlf_A Maltose/maltodextrin im 91.7 0.09 3.1E-06 52.8 3.3 25 245-269 29-53 (381)
466 3reg_A RHO-like small GTPase; 91.7 0.094 3.2E-06 46.4 3.1 23 246-268 24-46 (194)
467 1ls1_A Signal recognition part 91.6 0.19 6.4E-06 48.5 5.4 34 245-278 98-134 (295)
468 3oaa_A ATP synthase subunit al 91.6 0.3 1E-05 50.5 7.1 58 248-307 165-230 (513)
469 3cph_A RAS-related protein SEC 91.6 0.095 3.2E-06 46.9 3.1 23 246-268 21-43 (213)
470 3pqc_A Probable GTP-binding pr 91.6 0.082 2.8E-06 46.4 2.6 24 245-268 23-46 (195)
471 3t5g_A GTP-binding protein RHE 91.6 0.086 3E-06 45.8 2.7 22 246-267 7-28 (181)
472 2bcg_Y Protein YP2, GTP-bindin 91.6 0.085 2.9E-06 47.1 2.7 23 246-268 9-31 (206)
473 1pui_A ENGB, probable GTP-bind 91.5 0.047 1.6E-06 49.0 0.9 24 245-268 26-49 (210)
474 2dpy_A FLII, flagellum-specifi 91.5 0.16 5.5E-06 51.9 4.9 29 245-273 157-185 (438)
475 2ck3_A ATP synthase subunit al 91.4 0.34 1.1E-05 50.3 7.3 58 248-307 165-238 (510)
476 3dpu_A RAB family protein; roc 91.4 0.22 7.4E-06 52.1 6.1 22 246-267 42-63 (535)
477 2hf9_A Probable hydrogenase ni 91.4 0.092 3.1E-06 47.7 2.8 24 246-269 39-62 (226)
478 1g29_1 MALK, maltose transport 91.4 0.089 3E-06 52.7 2.9 25 245-269 29-53 (372)
479 3iev_A GTP-binding protein ERA 91.4 0.24 8.2E-06 47.9 5.9 24 244-267 8-32 (308)
480 3gj0_A GTP-binding nuclear pro 91.4 0.08 2.8E-06 48.0 2.3 23 246-268 16-39 (221)
481 3k53_A Ferrous iron transport 91.3 0.081 2.8E-06 50.1 2.4 23 246-268 4-26 (271)
482 2fu5_C RAS-related protein RAB 91.3 0.065 2.2E-06 46.7 1.6 22 246-267 9-30 (183)
483 2npi_A Protein CLP1; CLP1-PCF1 91.2 0.095 3.3E-06 54.0 2.9 26 244-269 137-162 (460)
484 2qag_B Septin-6, protein NEDD5 91.2 0.11 3.8E-06 52.9 3.4 21 248-268 45-65 (427)
485 2gks_A Bifunctional SAT/APS ki 91.2 0.11 3.7E-06 54.8 3.4 32 246-277 373-407 (546)
486 1ksh_A ARF-like protein 2; sma 91.2 0.1 3.5E-06 45.7 2.7 23 245-267 18-40 (186)
487 2vp4_A Deoxynucleoside kinase; 91.2 0.11 3.8E-06 47.9 3.1 28 247-275 22-49 (230)
488 2bbs_A Cystic fibrosis transme 91.1 0.086 2.9E-06 50.9 2.3 25 245-269 64-88 (290)
489 3d31_A Sulfate/molybdate ABC t 91.1 0.075 2.6E-06 52.7 2.0 25 245-269 26-50 (348)
490 1gwn_A RHO-related GTP-binding 91.1 0.1 3.5E-06 47.1 2.7 23 246-268 29-51 (205)
491 2rcn_A Probable GTPase ENGC; Y 91.0 0.12 4.1E-06 51.4 3.3 25 246-270 216-240 (358)
492 4ag6_A VIRB4 ATPase, type IV s 91.0 0.23 8E-06 49.5 5.5 34 245-278 35-71 (392)
493 4f4c_A Multidrug resistance pr 91.0 0.18 6E-06 58.8 5.2 27 243-269 1103-1129(1321)
494 3qks_A DNA double-strand break 90.9 0.12 4.1E-06 46.9 3.0 25 247-271 25-49 (203)
495 2ew1_A RAS-related protein RAB 90.9 0.11 3.7E-06 46.8 2.7 23 246-268 27-49 (201)
496 3ch4_B Pmkase, phosphomevalona 90.7 0.2 6.8E-06 45.7 4.3 38 243-280 9-47 (202)
497 2atx_A Small GTP binding prote 90.7 0.12 4.1E-06 45.6 2.8 23 246-268 19-41 (194)
498 2cjw_A GTP-binding protein GEM 90.7 0.13 4.5E-06 45.7 3.1 22 247-268 8-29 (192)
499 2fv8_A H6, RHO-related GTP-bin 90.6 0.12 4.2E-06 46.3 2.8 23 246-268 26-48 (207)
500 3gd7_A Fusion complex of cysti 90.6 0.12 4E-06 52.1 2.9 25 245-269 47-71 (390)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-41 Score=343.32 Aligned_cols=212 Identities=25% Similarity=0.332 Sum_probs=181.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC--
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-- 283 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~-- 283 (455)
+..+|++|+|.+++|++|.+.+..++.+|+.|...|.++|+|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 446999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred ----hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 284 ----NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 284 ----~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
+..++.+|..+. .||||||||||+++..+........ ...+.++++||+.|||+... ++++||+|
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~-------~~~~~~l~~lL~~lDg~~~~--~~V~vIaA 293 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGD-------SEVQRTMLELLNQLDGFETS--KNIKIIMA 293 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGG-------GHHHHHHHHHHHHHHTTTCC--CCEEEEEE
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCc-------HHHHHHHHHHHHhhhccCCC--CCeEEEec
Confidence 577888887764 7999999999999874433222111 04567899999999999765 45999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
||+|+.|||||+||||||.+|++|.|+.++|.+|++.++.........++..++... ++|+|||..+|.
T Consensus 294 TNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 294 TNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp ESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred cCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999775443333456666544 599999988764
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-41 Score=341.57 Aligned_cols=215 Identities=22% Similarity=0.301 Sum_probs=182.3
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~ 282 (455)
.-.+..+|++|+|.+++|++|.+.+..|+.+++.|...|.++++|||||||||||||++|+|+|++++.+++.++.+++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 34455799999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred C------hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEE
Q 012846 283 S------NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERII 354 (455)
Q Consensus 283 ~------~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ii 354 (455)
+ +..++.+|..+. .||||||||||+++..+........ .....++++||+.|||+... ++++|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~-------~~~~~~l~~LL~~lDg~~~~--~~ViV 324 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGE-------REIQRTMLELLNQLDGFDDR--GDVKV 324 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSC-------CHHHHHHHHHHHHHHHCCCS--SSEEE
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCcc-------HHHHHHHHHHHHHhhCcCCC--CCEEE
Confidence 3 466788887654 7999999999999874433222211 14567899999999998654 56999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 355 VFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 355 I~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|+|||+|+.|||||+||||||.+|++++|+.++|++||+.++......-..+++.++... ++|+|||..+|.
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999765433333455665543 599999998874
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-40 Score=338.01 Aligned_cols=213 Identities=24% Similarity=0.339 Sum_probs=181.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC-
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS- 283 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~- 283 (455)
.+..+|++|+|.+++|+.|.+.+..++.+++.|...|.++++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 4556899999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred -----hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 284 -----NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 284 -----~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
...++.+|..+ ..||||||||||+++..+........ .....++++||+.|||+.+. ++++||+
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~-------~~~~~~l~~lL~~lDg~~~~--~~vivI~ 325 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSAD-------REIQRTLMELLTQMDGFDNL--GQTKIIM 325 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSST-------THHHHHHHHHHHHHHSSSCT--TSSEEEE
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcc-------hHHHHHHHHHHHHhhcccCC--CCeEEEE
Confidence 46678888665 48999999999999874433222111 14567899999999999765 4699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|||+|+.|||||+||||||.+|++|+|+.++|.+||+.++.........++..++... ++|+|||..+|.
T Consensus 326 ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp EESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred ecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765433333456666554 599999998774
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-40 Score=342.22 Aligned_cols=234 Identities=22% Similarity=0.282 Sum_probs=188.3
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~ 282 (455)
.-.++.+|++|+|.+++|++|.+.+..|+.+++.|.+.|.++|+|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred C------hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEE
Q 012846 283 S------NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERII 354 (455)
Q Consensus 283 ~------~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ii 354 (455)
+ +..++.+|..+. .||||||||||+++..+......+. ...+.++++||+.|||+.+. ++++|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~-------~~~~~~~~~lL~~ldg~~~~--~~ViV 323 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGD-------REVQRTMLELLNQLDGFSSD--DRVKV 323 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTT-------HHHHHHHHHHHHHHTTSCSS--CSSEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCc-------hHHHHHHHHHHHHhhccCCC--CCEEE
Confidence 3 467788886654 7999999999999874432222111 14567889999999999765 46999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHHc------
Q 012846 355 VFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLLK------ 427 (455)
Q Consensus 355 I~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~------ 427 (455)
|+|||+|+.|||||+||||||.+|++|+|+.++|.+||+.++......-..+++.++... ++|+|||..+|..
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988654322222345555543 5999999988642
Q ss_pred -CCCHHHHHHHHHHHHHHH
Q 012846 428 -NEDPEIALKGLLEFLNAK 445 (455)
Q Consensus 428 -~~~~~~al~~l~~~l~~~ 445 (455)
.+......+.+.+++++.
T Consensus 404 r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 404 RNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHTCSSBCHHHHHHHHHSC
T ss_pred HcCCCCcCHHHHHHHHHHH
Confidence 222223344555665543
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-39 Score=334.38 Aligned_cols=214 Identities=24% Similarity=0.317 Sum_probs=180.9
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS 283 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~ 283 (455)
-.+..+|++|+|.+++|+.|.+.+..|+.+++.|..+|.++++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 34456999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ------hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEE
Q 012846 284 ------NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIV 355 (455)
Q Consensus 284 ------~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI 355 (455)
+..++.+|..+. .||||||||+|+++..+........ ...+.++++||+.|||+.+. .+++||
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~-------~~~~r~l~~lL~~ldg~~~~--~~v~vI 315 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSD-------REVQRILIELLTQMDGFDQS--TNVKVI 315 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCC-------CHHHHHHHHHHHHHHHSCSS--CSEEEE
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCC-------hHHHHHHHHHHHHhhCCCCC--CCEEEE
Confidence 467888887664 7999999999999874432222111 14567899999999999776 459999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeC-CCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 356 FTTNHKDRLDPAVLRPGRMDVHIYMS-YCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 356 ~tTN~~~~LD~aLlrpgR~d~~I~~~-~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
+|||+|+.|||||+||||||.+|+|| +|+.++|..|++.++.........++..++... ++|+|||..+|.
T Consensus 316 ~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 316 MATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp EEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred EecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999999999999999997 899999999999998765332223455665543 599999998874
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-39 Score=333.07 Aligned_cols=214 Identities=21% Similarity=0.236 Sum_probs=180.8
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS 283 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~ 283 (455)
-.+..+|++|+|.+++|++|.+.+..++.+++.|..+|.++++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred ------hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEE
Q 012846 284 ------NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIV 355 (455)
Q Consensus 284 ------~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI 355 (455)
+..++.+|..+ ..||||||||+|.++..+.....+.. .....++++||+.||+.... ++++||
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~-------~~~~~~l~~lL~~lDg~~~~--~~ViVI 352 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGD-------NEVQRTMLELITQLDGFDPR--GNIKVM 352 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGG-------GHHHHHHHHHHHHHHSSCCT--TTEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCcc-------HHHHHHHHHHHHHhhccCCC--CcEEEE
Confidence 46788888765 48999999999999874433222111 14567889999999998654 569999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 356 FTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 356 ~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
+|||+|+.|||||+||||||.+|+++.|+.++|.+||+.++.........+++.++... ++|+|||..+|.
T Consensus 353 aATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 353 FATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp EECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred eCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765433323345555443 599999998874
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8e-35 Score=319.15 Aligned_cols=213 Identities=21% Similarity=0.329 Sum_probs=160.5
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--- 282 (455)
+..+|++++|.+++|+.|.+.+..++.+++.|.+.|..+++|+|||||||||||++|+|+|++++.+++.++.+++.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ---ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 283 ---SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 283 ---~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
++..++++|..+. .||||||||||+++..+........ ....+++++||..|||+.+. ++++||+|
T Consensus 552 vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~-------~~~~rv~~~lL~~mdg~~~~--~~V~vi~a 622 (806)
T 3cf2_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG-------GAADRVINQILTEMDGMSTK--KNVFIIGA 622 (806)
T ss_dssp CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------------CHHHHHHHHHHHSSCSS--SSEEEECC
T ss_pred cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCc-------hHHHHHHHHHHHHHhCCCCC--CCEEEEEe
Confidence 5688999998774 7999999999999875433211111 04567899999999999765 45999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHHc
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLLK 427 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~ 427 (455)
||+|+.||||++||||||.+|++|+|+.++|.+||+.++.........++..+++.. ++|+|||..+|..
T Consensus 623 TN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 623 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp -CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHH
T ss_pred CCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999776444444566666654 5999999998653
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.8e-33 Score=305.10 Aligned_cols=208 Identities=21% Similarity=0.300 Sum_probs=179.5
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC----
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH---- 282 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~---- 282 (455)
..+|++|+|.+++|++|.+.+..++.+++.|..+|..+++|+|||||||||||+||+++|++++.+++.++++++.
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred --ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec
Q 012846 283 --SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358 (455)
Q Consensus 283 --~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT 358 (455)
++..++.+|..+. .||||||||||.+++.+.... .. ..+..+++||..||++.+. ..++||+||
T Consensus 280 gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~--------~~~riv~~LL~~mdg~~~~--~~V~VIaaT 347 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GE--------VERRIVSQLLTLMDGLKQR--AHVIVMAAT 347 (806)
T ss_dssp THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CT--------THHHHHHHHHTHHHHCCGG--GCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--Ch--------HHHHHHHHHHHHHhccccc--CCEEEEEec
Confidence 3477889998775 799999999999987443221 11 4567889999999999765 359999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 359 NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 359 N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|+|+.|||||+||||||.+|+++.|+.++|.+|++.++.........++..++... +++++|+..++.
T Consensus 348 N~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~ 416 (806)
T 3cf2_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp SSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999998765443344566666544 699999988754
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=3.5e-29 Score=247.49 Aligned_cols=213 Identities=21% Similarity=0.320 Sum_probs=173.3
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-- 282 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~-- 282 (455)
.++.+|++|+|.+++|+.|.+.+..++..++.|...|.+.++++|||||||||||++|+++|+.++.+++.++++++.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999987763
Q ss_pred ----ChHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ----SNSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ----~~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
+...++.+|..+ ..|+||||||||.+...+........ ......++.||..||++... .+++||+
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~-------~~~~~~~~~lL~~l~~~~~~--~~v~vi~ 159 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG-------GAADRVINQILTEMDGMSTK--KNVFIIG 159 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSS-------CSCCHHHHHHHHHHHSSCTT--SSEEEEE
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcc-------hHHHHHHHHHHHHhhcccCC--CCEEEEE
Confidence 345677777665 36899999999998764332111110 03456678999999987543 4699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQN-VRVTPADVGEQLL 426 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 426 (455)
|||+++.||++++|||||+..|+++.|+.++|.+|++.++.........+++.+... .+++++|+..++.
T Consensus 160 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 160 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred ecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999976543222233444433 3689999988764
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=6.7e-29 Score=242.47 Aligned_cols=208 Identities=22% Similarity=0.347 Sum_probs=164.1
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC---
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS--- 283 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~--- 283 (455)
..+|++|+|.+++|+.|.+.+..++..++.+..+|...++|++|+||||||||+|+++||+.++.+++.++..++.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~ 85 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYV 85 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred ---hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec
Q 012846 284 ---NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358 (455)
Q Consensus 284 ---~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT 358 (455)
...+..+|..+ ..|+|+++||+|.+...+... .. . .....+++++..|||.... ..++++++|
T Consensus 86 ~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~----~----~~~~~~~~~l~~Lsgg~~~--~~~i~ia~t 153 (274)
T 2x8a_A 86 GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ET----G----ASVRVVNQLLTEMDGLEAR--QQVFIMAAT 153 (274)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------------CTTHHHHHHHHHHTCCST--TCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cc----h----HHHHHHHHHHHhhhccccc--CCEEEEeec
Confidence 24567777764 479999999999886532211 00 0 2345678999999998543 458899999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC-CCc--HHHHHHHhhc---CCCCHHHHHHHHH
Q 012846 359 NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD-HPL--IYEIKEIMQN---VRVTPADVGEQLL 426 (455)
Q Consensus 359 N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~-~~l--~~~i~~l~~~---~~~tpa~i~~~l~ 426 (455)
|+|+.||++++||||||.+|++++|+.++|.+|++.++.... .++ ..+++.++.. .++|+||+..++.
T Consensus 154 n~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 154 NRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp SCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred CChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 999999999999999999999999999999999999985421 121 2345566653 3799999998754
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=238.43 Aligned_cols=208 Identities=22% Similarity=0.292 Sum_probs=171.0
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-CCceEEeeccccC--
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-NFDIYDLELSAVH-- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-~~~~~~l~~~~~~-- 282 (455)
++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 4568999999999999999999999999998874 34556899999999999999999999999 8999999988764
Q ss_pred ----ChHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ----SNSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ----~~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
++..++.+|..+ .+|+||||||||.+...+.... . ......+++||..||++... ...++||+
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~--~--------~~~~~~~~~ll~~ld~~~~~-~~~v~vI~ 154 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--S--------EAARRIKTEFLVQMQGVGVD-NDGILVLG 154 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC--T--------THHHHHHHHHHHHHHCSSSC-CTTEEEEE
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc--c--------hHHHHHHHHHHHHHhccccc-CCCEEEEE
Confidence 346677777654 4789999999999976332211 1 03456789999999998542 35699999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc-HHHHHHHhhcC-CCCHHHHHHHHHc
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL-IYEIKEIMQNV-RVTPADVGEQLLK 427 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l~~ 427 (455)
|||+|+.||++++| ||+..++++.|+.++|..|++.++......+ ...+..++... +++++|+..++..
T Consensus 155 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 155 ATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp EESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred ecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999997765443 45677777655 5899999987643
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=8.5e-28 Score=234.58 Aligned_cols=215 Identities=25% Similarity=0.281 Sum_probs=172.9
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~ 282 (455)
...++.+|++|+|.+++++.|.+.+..++..++.|...|...++++|||||||||||++|+++|+.++.+++.+++..+.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred C------hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEE
Q 012846 283 S------NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERII 354 (455)
Q Consensus 283 ~------~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ii 354 (455)
. ...+..+|..+ ..|+||||||||.+...+........ ...+..+..+++.++++... ..++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~-------~~~~~~l~~ll~~~~~~~~~--~~~~v 159 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGD-------REVQRTLMQLLAEMDGFDAR--GDVKI 159 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGG-------GHHHHHHHHHHHHHHTTCSS--SSEEE
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCcc-------HHHHHHHHHHHHHhhCCCCC--CCEEE
Confidence 2 24455666544 36899999999998763322111110 14456788888988887543 46999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 355 VFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 355 I~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|+|||.++.+|++++|||||+..++++.|+.+++.+|++.++.........++..+.... +++++++..++.
T Consensus 160 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 160 IGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp EEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred EEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765433333455555433 589999988654
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=1.3e-27 Score=229.81 Aligned_cols=211 Identities=22% Similarity=0.309 Sum_probs=155.0
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC---
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS--- 283 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~--- 283 (455)
+.+|++|+|.+++|+.|.+.+. ++..++.|...|...++++|||||||||||++|+++|+.++.+++.++++.+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4679999999999999988765 477888899999999999999999999999999999999999999999988642
Q ss_pred ---hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec
Q 012846 284 ---NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358 (455)
Q Consensus 284 ---~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT 358 (455)
...++.+|..+. .++||||||+|.+...+........ . ...+..+..|++.+++.... ..++||+||
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~--~----~~~~~~l~~ll~~~~~~~~~--~~~~vi~~t 152 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFS--N----TEEEQTLNQLLVEMDGMGTT--DHVIVLAST 152 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------------CHHHHHHHHHHHTCCTT--CCEEEEEEE
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCcc--c----hhHHHHHHHHHHHhhCcCCC--CCEEEEecC
Confidence 345666666543 6899999999998763322111000 0 03456788999999987443 468999999
Q ss_pred CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHH--HHHHhhcC-CCCHHHHHHHHH
Q 012846 359 NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYE--IKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 359 N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~--i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|.++.+|++++|||||+..++++.|+.++|.+|++.++.........+ +..+.... +++++++..++.
T Consensus 153 n~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 153 NRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp SCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999987654444333 24454443 589999987764
No 14
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=1.1e-27 Score=250.07 Aligned_cols=211 Identities=25% Similarity=0.330 Sum_probs=167.5
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC--
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-- 283 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~-- 283 (455)
...+|++|+|.++.|+++.+.+. ++..+..|..+|...++|+||+||||||||++++++|++++.+++.++++++..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 34589999999999999988765 577888999999999999999999999999999999999999999999888752
Q ss_pred ----hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 284 ----NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 284 ----~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
...++.+|..+ ..||||||||||.+...+........ .....++++||..||++... .+++||+|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~-------~~~~~~l~~LL~~ld~~~~~--~~viVIaa 160 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH-------DEREQTLNQLLVEMDGFDSK--EGIIVMAA 160 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------------CHHHHHHHHHHHHHHHSCGG--GTEEEEEE
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCc-------HHHHHHHHHHHHHHhccCCC--CCEEEEEe
Confidence 35677777665 37999999999999763322111100 03456789999999987543 45999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
||+++.|||+++||||||..|.++.|+.++|.+|++.++.........++..+.... +++++|+..++-
T Consensus 161 Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 161 TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999998765322122244454443 588899887653
No 15
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=4.6e-27 Score=226.43 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=163.3
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC-
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH- 282 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~- 282 (455)
...+.+|++|+|.+++|+.+.+.+. ++..++.|+..|...++|+||+||||||||++++++|+.++.+++.++++++.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 3456789999999999999988765 57778888889988999999999999999999999999999999999988764
Q ss_pred -----ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEE
Q 012846 283 -----SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIV 355 (455)
Q Consensus 283 -----~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI 355 (455)
....++.+|..+. .|+++||||||.+...+........ ......++.+|..+|++... ..++||
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~-------~~~~~~~~~ll~~l~~~~~~--~~~~vI 154 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH-------DEREQTLNQMLVEMDGFEGN--EGIIVI 154 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTT-------CHHHHHHHHHHHHHHTCCSS--SCEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCc-------hHHHHHHHHHHHHhhCcccC--CCEEEE
Confidence 2456777777653 5799999999998753221111000 13346788999999987543 458999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 356 FTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 356 ~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
+|||+++.+|++++|||||+..++++.|+.++|.+|++.++..........+..+.... +++++|+..++.
T Consensus 155 ~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 155 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp EEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998654322122233444444 469999987654
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=2.5e-27 Score=236.30 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=170.5
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~ 282 (455)
...++.+|++|+|.+++|+.|.+.+..++..++.+... ..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN-RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT-CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC-CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 44566789999999999999999999999999888774 45568999999999999999999999999999999988763
Q ss_pred C------hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEE
Q 012846 283 S------NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERII 354 (455)
Q Consensus 283 ~------~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ii 354 (455)
+ ...++.+|..+ ..|+||||||||.+...+...... ......+.|+..+|++... ...++|
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~----------~~~~~~~~ll~~l~~~~~~-~~~v~v 157 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE----------ASRRIKTELLVQMNGVGND-SQGVLV 157 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------C----------CTHHHHHHHHHHHGGGGTS-CCCEEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcch----------HHHHHHHHHHHHhcccccc-CCceEE
Confidence 2 34566666554 478999999999997633221110 3456779999999998543 346999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc-HHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 355 VFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL-IYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 355 I~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|+|||+|+.||++++| ||+..|+++.|+.++|..|++.++......+ ...+..+.... ++++++|..++.
T Consensus 158 i~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 158 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999998765543 45667776655 589999988764
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=1.5e-26 Score=233.84 Aligned_cols=209 Identities=20% Similarity=0.264 Sum_probs=166.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-- 282 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~-- 282 (455)
.++.+|++|+|.+++|+.|.+.+..++..++.|.. +...++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 34568999999999999999999999999998887 556678999999999999999999999999999999987753
Q ss_pred ----ChHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ----SNSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ----~~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
....++.+|..+ ..++||||||||.+...+..... . .....+++||..||++... ...++||+
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~-~---------~~~~~~~~ll~~l~~~~~~-~~~v~vI~ 192 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES-E---------ASRRIKTELLVQMNGVGND-SQGVLVLG 192 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------C-T---------HHHHHHHHHHHHHHHCC----CCEEEEE
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcc-h---------HHHHHHHHHHHHhhccccc-CCCeEEEe
Confidence 345667777654 37899999999998763322110 0 3456678999999987542 24689999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc-HHHHHHHhhcC-CCCHHHHHHHHHc
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL-IYEIKEIMQNV-RVTPADVGEQLLK 427 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l~~ 427 (455)
|||+++.||++++| ||+..++++.|+.++|..|++.++......+ ...+..++... ++++++|..+|..
T Consensus 193 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~ 263 (355)
T 2qp9_X 193 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKD 263 (355)
T ss_dssp EESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999998765433 44666676655 5899999887643
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=2.4e-26 Score=241.33 Aligned_cols=209 Identities=21% Similarity=0.300 Sum_probs=173.3
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC--
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-- 283 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~-- 283 (455)
.+.+|++|+|.+..+++|.+.+..++..++.|..+|.+.++++|||||||||||++|+++|+.++.+++.++|+.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 456799999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred ----hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 284 ----NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 284 ----~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
...++.+|..+. .|+||||||||.+...+... ... .....++.||..||+.... ..++||+|
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~--------~~~~~~~~LL~~ld~~~~~--~~v~vIaa 346 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGE--------VERRIVSQLLTLMDGLKQR--AHVIVMAA 346 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCH--------HHHHHHHHHHHHHHHSCTT--SCEEEEEE
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cch--------HHHHHHHHHHHHhhccccC--CceEEEEe
Confidence 356677776653 68999999999998633211 110 3456789999999987543 45999999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
||+++.||+++.|+|||+..|+++.|+.++|.+|++.++..........+..++... +++++++..++.
T Consensus 347 Tn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp ESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999998765433333455555443 689999987754
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=5.7e-26 Score=236.32 Aligned_cols=209 Identities=21% Similarity=0.274 Sum_probs=166.7
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-CCceEEeeccccCC
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-NFDIYDLELSAVHS 283 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-~~~~~~l~~~~~~~ 283 (455)
.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 45678999999999999999999999988888774 34556899999999999999999999999 89999999887642
Q ss_pred ------hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEE
Q 012846 284 ------NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIV 355 (455)
Q Consensus 284 ------~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI 355 (455)
...++.+|..+ ..|+||||||||.+...+.... .. .....+++||..||++... ...++||
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~--------~~~~~~~~lL~~l~~~~~~-~~~v~vI 275 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SE--------AARRIKTEFLVQMQGVGVD-NDGILVL 275 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC--CG--------GGHHHHHHHHTTTTCSSCC-CSSCEEE
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc--cc--------HHHHHHHHHHHHHhCcccC-CCCEEEE
Confidence 34566777554 4789999999999876332211 10 3456789999999997532 3569999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc-HHHHHHHhhcC-CCCHHHHHHHHHc
Q 012846 356 FTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL-IYEIKEIMQNV-RVTPADVGEQLLK 427 (455)
Q Consensus 356 ~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l~~ 427 (455)
+|||+|+.||++++| ||+..++++.|+.++|..|++.++......+ ...+..++... ++++++|..++..
T Consensus 276 ~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 276 GATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp EEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999997765433 34566666654 5899999987643
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=2.5e-25 Score=233.44 Aligned_cols=211 Identities=24% Similarity=0.306 Sum_probs=165.9
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC--
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-- 283 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~-- 283 (455)
++.+|++|+|.++.|+++.+.+. ++..+..|..+|...++|+||+||||||||+|+++||+.++.+++.++++++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 56789999999999999988765 567788899999999999999999999999999999999999999999987642
Q ss_pred ----hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 284 ----NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 284 ----~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
...++.+|..+. .|+|+||||||.+...+........ .....++++||..|||.... ..++++++
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~-------~e~~~~l~~LL~~Ldg~~~~--~~viviAa 175 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN-------DEREQTLNQLLVEMDGFEKD--TAIVVMAA 175 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSS-------HHHHHHHHHHHHHGGGCCSS--CCCEEEEC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCc-------HHHHHHHHHHHHHhcccccC--ccEEEEEe
Confidence 245677776664 5899999999998653221100000 03456789999999987543 45899999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
||+|+.||++++||||||.+|+++.|+.++|.+|++.++.........++..+.... +++++|+..++-
T Consensus 176 tn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 176 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp CSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred cCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999887643222222344444443 578888877653
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=7.1e-27 Score=226.18 Aligned_cols=213 Identities=24% Similarity=0.344 Sum_probs=160.2
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC--
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-- 283 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~-- 283 (455)
++.+|++|+|.+++++.+.+.+. ++..++.|...|...++|+|||||||||||++|+++|+.++.+++.++++.+.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 45679999999999999988765 578889999999999999999999999999999999999999999998877642
Q ss_pred ----hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 284 ----NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 284 ----~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
...++.+|..+ ..++||||||+|.+...+......... ......++.||+.+|+.... ...++||+|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~------~~~~~~~~~ll~~l~~~~~~-~~~v~vi~t 157 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGN------DEREQTLNQLLAEMDGFGSE-NAPVIVLAA 157 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------C------CCSCSSTTTTTTTTTCSSCS-CSCCEEEEC
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCc------hhHHHHHHHHHHHhhCcccC-CCCEEEEEe
Confidence 22344444433 368999999999987633221110000 03345678899999987442 345899999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
||.++.+|++++|+|||+..++++.|+.++|..+++.++..........+..+.... +++++++..++.
T Consensus 158 tn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~ 227 (268)
T 2r62_A 158 TNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIIN 227 (268)
T ss_dssp BSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred cCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998654322112233344333 478888877653
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=3.7e-25 Score=226.21 Aligned_cols=212 Identities=23% Similarity=0.302 Sum_probs=165.9
Q ss_pred eecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 202 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
+...++.+|++|+|.+.+++.|.+.+..+...++.|...+.+ ++++|||||||||||++|+++|+.++.+++.++++.+
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAP-ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCC-CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCC-CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 445678899999999999999999999999888888887744 6899999999999999999999999999999999887
Q ss_pred CC------hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceE
Q 012846 282 HS------NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERI 353 (455)
Q Consensus 282 ~~------~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~i 353 (455)
.. ...++.+|..+ ..++||||||||.+...+..... ......+..|+..+++........++
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~----------~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEH----------DASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccc----------hHHHHHHHHHHHHhhcccccCCCCEE
Confidence 53 34556666544 36899999999999763321111 03456778999999988765556799
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH-HHHHHHhhcC-CCCHHHHHHHHH
Q 012846 354 IVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI-YEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 354 iI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
||+|||.++.||++++| ||+.+|+++.|+.++|..|++.++......+. ..+..+.... +++++++..++.
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999877655543 3455555443 588888877653
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=1.2e-24 Score=208.99 Aligned_cols=212 Identities=23% Similarity=0.288 Sum_probs=160.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-- 282 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~-- 282 (455)
.++.+|++++|.++.++++.+.... +..+..+..++...++|++|+||||||||+|++++|+.++.+++.++..++.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 3456899999999999999876654 5677888899999999999999999999999999999999999999876542
Q ss_pred ----ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ----SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ----~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
....+..+|.... .++++++||||.+...+........ ......++.++..|+|.... ..+++++
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~-------~~~~~~~~~ll~~l~g~~~~--~~~i~~a 159 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN-------DEREQTLNQLLVEMDGFEKD--TAIVVMA 159 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------C-------HHHHHHHHHHHHHHHTCCTT--CCEEEEE
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccc-------hHHHHHHHHHHHHHhCCCCC--CCEEEEE
Confidence 1245667777654 5899999999988653221100000 03345678899999987543 3478889
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
+||+|+.||++++|||||+.+|+++.|+.++|.+|++.++.........++..+.... +++++|+..++.
T Consensus 160 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 160 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred ccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999887543222222344455443 578888887754
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=7e-25 Score=221.82 Aligned_cols=209 Identities=22% Similarity=0.311 Sum_probs=165.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC-
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS- 283 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~- 283 (455)
.++.+|++|+|.+++++.|.+.+..++..++.|...+ ..++++||+||||||||++|+++|+.++.+++.++++++..
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3567899999999999999999999888888887765 45679999999999999999999999999999999988753
Q ss_pred -----hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 284 -----NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 284 -----~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
...++.+|..+ ..++||||||||.+...+..... ......++.||..+++........++||+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~----------~~~~~~~~~lL~~l~~~~~~~~~~v~vI~ 226 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEH----------ESSRRIKTEFLVQLDGATTSSEDRILVVG 226 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------------CHHHHHHHHHHHHHHC----CCCCEEEEE
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcc----------hHHHHHHHHHHHHHhcccccCCCCEEEEE
Confidence 24455555543 46899999999999763221110 03456778999999987655556799999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc-HHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL-IYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
|||.++.||++++| ||+..++++.|+.++|..+++.++......+ ...+..+.... +++++++..++-
T Consensus 227 atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 227 ATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999 9999999999999999999999886654444 34566666544 589999988754
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.92 E-value=1.7e-24 Score=212.49 Aligned_cols=209 Identities=20% Similarity=0.291 Sum_probs=161.1
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC-
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS- 283 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~- 283 (455)
.++.+|++++|.+++++.|.+.+..+...++.|...+. .++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~-~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGC-CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCC-CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 45678999999999999999999998888888877663 4679999999999999999999999999999999987642
Q ss_pred -----hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC-CCCceEEE
Q 012846 284 -----NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS-CGDERIIV 355 (455)
Q Consensus 284 -----~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~-~~~~~iiI 355 (455)
...++.+|..+ ..|+||||||+|.+...+...... ......+.||..+|+.... .+..++||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~----------~~~~~~~~ll~~l~~~~~~~~~~~v~vi 163 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE----------ASRRLKTEFLVEFDGLPGNPDGDRIVVL 163 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----C----------CSHHHHHHHHHHHHHCC------CEEEE
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcch----------HHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 23455555443 478999999999997633221110 3345667899999987542 23468999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH-HHHHHHhhcC-CCCHHHHHHHHH
Q 012846 356 FTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI-YEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 356 ~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
+|||+++.+|++++| ||+..++++.|+.+++..|++.++......+. ..+..+.... +++++++..++.
T Consensus 164 ~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 164 AATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp EEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred eecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999 99999999999999999999998866544433 3455555433 588888876653
No 26
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=1.9e-25 Score=219.96 Aligned_cols=164 Identities=18% Similarity=0.171 Sum_probs=117.5
Q ss_pred hhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC------hHHHHHHHHhc------CCceEEEEeccc
Q 012846 239 RVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS------NSELRRVLLST------GNRSILVVEDID 306 (455)
Q Consensus 239 ~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~------~~~L~~ll~~~------~~~sIlliDeiD 306 (455)
..+..+|+|+|||||||||||++|+++|+.++.+++.++++++.+ ...++.+|..+ ..|+||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 346777899999999999999999999999999999999888643 34567777655 278999999999
Q ss_pred cccccccccCCCccccccCCCccchhhHhhHhhhhhcccc---------CCCCceEEEEecCCCCCCCccccCCCceeeE
Q 012846 307 CSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWS---------SCGDERIIVFTTNHKDRLDPAVLRPGRMDVH 377 (455)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~---------~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~ 377 (455)
.+.+......... ...+...+.|++.||+... ....+++||+|||+++.||++++||||||.+
T Consensus 110 ~~~~~~~~~~~~~--------~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~ 181 (293)
T 3t15_A 110 AGAGRMGGTTQYT--------VNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181 (293)
T ss_dssp ----------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEE
T ss_pred hhcCCCCCCcccc--------chHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCcee
Confidence 9876222111100 0334566889999985531 1224689999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhc
Q 012846 378 IYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQN 413 (455)
Q Consensus 378 I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~ 413 (455)
|++ |+.++|.+|++.++...+.. ...+..+...
T Consensus 182 i~~--P~~~~r~~Il~~~~~~~~~~-~~~l~~~~~~ 214 (293)
T 3t15_A 182 YWA--PTREDRIGVCTGIFRTDNVP-AEDVVKIVDN 214 (293)
T ss_dssp EEC--CCHHHHHHHHHHHHGGGCCC-HHHHHHHHHH
T ss_pred EeC--cCHHHHHHHHHHhccCCCCC-HHHHHHHhCC
Confidence 985 69999999999888644322 4455555554
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=1.6e-23 Score=204.16 Aligned_cols=212 Identities=23% Similarity=0.288 Sum_probs=159.7
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC--
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH-- 282 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~-- 282 (455)
.++.+|++++|.++.++++.+.... +..+..+..++...++|++|+||||||||+|+++||+.++.+++.+++.++.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 3567899999999999999876654 5667788899999999999999999999999999999999999999876542
Q ss_pred ----ChHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEE
Q 012846 283 ----SNSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVF 356 (455)
Q Consensus 283 ----~~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~ 356 (455)
....+..+|... ..|+++++||||.+...+........ ......+..++..+++.... ..+++++
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~-------~~~~~~~~~ll~~lsgg~~~--~~~i~~a 183 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN-------DEREQTLNQLLVEMDGFEKD--TAIVVMA 183 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------C-------HHHHHHHHHHHHHHTTCCTT--CCEEEEE
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcc-------hHHHHHHHHHHHHHhCCCCC--CCEEEEE
Confidence 124466667665 36899999999988643221100000 03345678899999886432 3478889
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 357 TTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 357 tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
+||+|+.||++++|||||+.+|+++.|+.++|.+|++.++..........+..+.... +++++|+..++.
T Consensus 184 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 184 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp EESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred ecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999887643222122244444433 578888877654
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=8.4e-27 Score=258.67 Aligned_cols=212 Identities=21% Similarity=0.323 Sum_probs=165.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH--- 282 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~--- 282 (455)
+..+|++++|.+++|+.|.+.+..++..++.|...|...+.++|||||||||||++|+++|+.++.+++.++++++.
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 34589999999999999999888888888888888999999999999999999999999999999999999988864
Q ss_pred ---ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 283 ---SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 283 ---~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
....++.+|..+. .||||||||||.+...+........ ......+++||+.||++... ..++||+|
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~-------~~~~~v~~~LL~~ld~~~~~--~~v~vI~t 622 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG-------GAADRVINQILTEMDGMSTK--KNVFIIGA 622 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHH-------HHHHHHHHHHHTTCC--------CCBCCCC
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcc-------hhHHHHHHHHHHHHhccccc--CCeEEEEe
Confidence 3467888887654 6899999999998763322111100 03467789999999998554 56899999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQN-VRVTPADVGEQLL 426 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 426 (455)
||+++.||||++|||||+.+|++++|+.+++..|++.++.........++..+... .++|+++|..++.
T Consensus 623 TN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 623 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp CBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred cCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999865432212223333332 3589999988764
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=2.5e-22 Score=222.87 Aligned_cols=208 Identities=21% Similarity=0.300 Sum_probs=169.9
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC--
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS-- 283 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~-- 283 (455)
.+.+|++|+|.+.++++|.+.+..++..++.|..++...++++||+||||||||+++++||+.++.+++.+++.++.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999877642
Q ss_pred ----hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe
Q 012846 284 ----NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT 357 (455)
Q Consensus 284 ----~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t 357 (455)
...++.+|.... .|+|+||||||.+...+.... .. .....+..|+..+++.... ..+++|+|
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~--~~--------~~~~~~~~Ll~ll~g~~~~--~~v~vI~a 346 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GE--------VERRIVSQLLTLMDGLKQR--AHVIVMAA 346 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC--SH--------HHHHHHHHHHHHHHSSCTT--SCCEEEEE
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc--ch--------HHHHHHHHHHHHhhhhccc--ccEEEecc
Confidence 345677776653 689999999999876332111 10 3456778899999998654 45899999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 012846 358 TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQN-VRVTPADVGEQL 425 (455)
Q Consensus 358 TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 425 (455)
||+++.+|+++.|+|||+..+.++.|+.++|..+++.++.........++..+... .+++++++...+
T Consensus 347 tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~ 415 (806)
T 1ypw_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp CSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHH
T ss_pred cCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHH
Confidence 99999999999999999999999999999999999988765433222234445443 358888887664
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=5.8e-19 Score=176.17 Aligned_cols=191 Identities=16% Similarity=0.161 Sum_probs=145.8
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~ 282 (455)
....|.+|++++|.+..++.+...+...... .....++||+||||||||++|+++|+.++.+++.+++..+.
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~ 92 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE 92 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred hccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc
Confidence 3456789999999999999998887655321 12346899999999999999999999999999999999988
Q ss_pred ChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcccc--------------CC
Q 012846 283 SNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWS--------------SC 348 (455)
Q Consensus 283 ~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~--------------~~ 348 (455)
....+...+.....+++|||||||.+.. .....|+..++...- ..
T Consensus 93 ~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 93 KSGDLAAILTNLSEGDILFIDEIHRLSP---------------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp SHHHHHHHHHTCCTTCEEEEETGGGCCH---------------------HHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred chhHHHHHHHhccCCCEEEEechhhcCH---------------------HHHHHHHHHHHhccchhhcccCccccceecC
Confidence 8888999998888999999999998743 223455555553210 00
Q ss_pred CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHH-HHHHhhcCCCCHHHHHHH
Q 012846 349 GDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYE-IKEIMQNVRVTPADVGEQ 424 (455)
Q Consensus 349 ~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~-i~~l~~~~~~tpa~i~~~ 424 (455)
...+++|++||....++++|++ ||+.+++++.|+.+++..+++.++......+.++ +..+.......+.++...
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 0137899999999999999999 9999999999999999999998876554444333 344444444555555443
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.81 E-value=2.1e-20 Score=194.90 Aligned_cols=171 Identities=16% Similarity=0.093 Sum_probs=117.8
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC--CceEEeeccccCC-
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN--FDIYDLELSAVHS- 283 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~--~~~~~l~~~~~~~- 283 (455)
...|++++|.+++++.+...+..+. .|..+++++|||||||||||++|+++|+.++ .+++.++++.+.+
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 3468999999999998887665432 2556678999999999999999999999999 9999999988753
Q ss_pred ----hHHHHHHHHhc-----CCceEEEEeccccccccccccCCCccccccCC---------CccchhhHhhHhhhhhccc
Q 012846 284 ----NSELRRVLLST-----GNRSILVVEDIDCSLELEDRQAQPTTVNVLKP---------LRPMQVTLSGLLNFLDGLW 345 (455)
Q Consensus 284 ----~~~L~~ll~~~-----~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~---------~~~~~~~ls~LL~~lDg~~ 345 (455)
...+++.|..+ ..||||||||||.+...+.............. ........+.++..++...
T Consensus 105 ~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~ 184 (456)
T 2c9o_A 105 EIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKER 184 (456)
T ss_dssp SSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhcc
Confidence 23478888776 37899999999999875433211111000000 0011122234555555322
Q ss_pred cCCCCceEEEEecCCCCCCCccccCCCceee--EEEeCCCCH
Q 012846 346 SSCGDERIIVFTTNHKDRLDPAVLRPGRMDV--HIYMSYCTP 385 (455)
Q Consensus 346 ~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~--~I~~~~p~~ 385 (455)
...++.++|++|||+++.+|+++.||||||. .+.+|.|+.
T Consensus 185 ~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 185 VEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp CCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred CCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 2334446666899999999999999999998 566677754
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.79 E-value=3.7e-18 Score=168.96 Aligned_cols=191 Identities=18% Similarity=0.195 Sum_probs=145.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS 283 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~ 283 (455)
...|.+|++++|.+..++.+.+.+...... + ..+.++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------K-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------C-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 346778999999999999988877654321 1 23468999999999999999999999999999999999888
Q ss_pred hHHHHHHHHh-cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-----cC---------C
Q 012846 284 NSELRRVLLS-TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-----SS---------C 348 (455)
Q Consensus 284 ~~~L~~ll~~-~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-----~~---------~ 348 (455)
..++...|.. ...+++|||||||.+.. . ....|+..++... .. .
T Consensus 77 ~~~l~~~l~~~~~~~~~l~lDEi~~l~~------------------~---~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~ 135 (324)
T 1hqc_A 77 PGDLAAILANSLEEGDILFIDEIHRLSR------------------Q---AEEHLYPAMEDFVMDIVIGQGPAARTIRLE 135 (324)
T ss_dssp HHHHHHHHTTTCCTTCEEEETTTTSCCH------------------H---HHHHHHHHHHHSEEEECCSSSSSCCCEEEE
T ss_pred hHHHHHHHHHhccCCCEEEEECCccccc------------------c---hHHHHHHHHHhhhhHHhccccccccccccC
Confidence 8888888776 57889999999998753 1 1244555554321 00 0
Q ss_pred CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 012846 349 GDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIY-EIKEIMQNVRVTPADVGEQL 425 (455)
Q Consensus 349 ~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~-~i~~l~~~~~~tpa~i~~~l 425 (455)
...+++|++||.+..++++|.+ ||+.++.++.|+.+++..+++.++...+..+.+ .++.++......|.++.+.+
T Consensus 136 ~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 136 LPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp CCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred CCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1247899999999999999998 999999999999999999999988665544433 34455555556777766654
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=1.1e-18 Score=171.85 Aligned_cols=178 Identities=16% Similarity=0.218 Sum_probs=133.9
Q ss_pred cc-cccccHHHHHHHHHHHHHHHhchhHHhhhCCCC---CceeEEeCCCCCChHHHHHHHHHHcC-------CceEEeec
Q 012846 210 FD-TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAW---KRGYLLYGPPGTGKSSLIAAMSNYLN-------FDIYDLEL 278 (455)
Q Consensus 210 f~-~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~---~rgiLL~GppGTGKT~la~aiA~~l~-------~~~~~l~~ 278 (455)
++ +|+|.+++|+.|.+.+..+.. +..+...|... +.++||+||||||||++|+++|+.++ .+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 699999999999988876553 55566666544 34699999999999999999999883 48999998
Q ss_pred cccCC------hHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCce
Q 012846 279 SAVHS------NSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDER 352 (455)
Q Consensus 279 ~~~~~------~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ 352 (455)
+.+.. ...+..+|... .++||||||+|.+...+.. .. .....++.|++.|+.. ...+
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~--~~----------~~~~~~~~Ll~~l~~~----~~~~ 170 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNE--RD----------YGQEAIEILLQVMENN----RDDL 170 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC-----C----------CTHHHHHHHHHHHHHC----TTTC
T ss_pred HHhhhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCCc--cc----------ccHHHHHHHHHHHhcC----CCCE
Confidence 87742 34556666554 6789999999998742211 00 3445678888888864 2457
Q ss_pred EEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHH
Q 012846 353 IIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEI 407 (455)
Q Consensus 353 iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i 407 (455)
++|+|||.++ .++|+|.+ ||+.+|+|+.|+.+++..|++.++......+.++.
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 228 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEA 228 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 8888888653 35799999 99999999999999999999999876554444433
No 34
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=2.1e-19 Score=185.28 Aligned_cols=163 Identities=13% Similarity=0.161 Sum_probs=73.1
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCC-CCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC-------
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH------- 282 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~-~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~------- 282 (455)
+.|+|.++.|+.|...+..+.++...+...+. .+++++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 36899999999998888776665555444433 3568999999999999999999999999999999986653
Q ss_pred -ChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEe-cCC
Q 012846 283 -SNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFT-TNH 360 (455)
Q Consensus 283 -~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~t-TN~ 360 (455)
.+..++.+|..+. .++++||+|.+..... . . ...+++++||+.|||+.+.. .+ +++ ||+
T Consensus 95 d~e~~lr~lf~~a~--~~~~~De~d~~~~~~~---~-~---------~e~rvl~~LL~~~dg~~~~~---~v-~a~~TN~ 155 (444)
T 1g41_A 95 EVDSIIRDLTDSAM--KLVRQQEIAKNRARAE---D-V---------AEERILDALLPPAKNQWGEV---EN-HDSHSST 155 (444)
T ss_dssp CTHHHHHHHHHHHH--HHHHHHHHHSCC----------------------------------------------------
T ss_pred cHHHHHHHHHHHHH--hcchhhhhhhhhccch---h-h---------HHHHHHHHHHHHhhcccccc---cc-ccccccC
Confidence 2345666665442 2345788876643111 0 0 44678999999999996542 23 444 999
Q ss_pred CCCCCccccCCCceeeEEEeCCCCHH-HHHHHH
Q 012846 361 KDRLDPAVLRPGRMDVHIYMSYCTPC-GFDTLA 392 (455)
Q Consensus 361 ~~~LD~aLlrpgR~d~~I~~~~p~~~-~r~~l~ 392 (455)
|+.||+||+||||||.+|+++.|+.. .+.+|+
T Consensus 156 ~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 156 RQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999999999999999987 555554
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.76 E-value=8.5e-18 Score=164.84 Aligned_cols=174 Identities=15% Similarity=0.252 Sum_probs=122.8
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhh-CCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC------
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS------ 283 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~-g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~------ 283 (455)
+.++|.++.++.|...+............. +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358999999999988876643322111111 1123578999999999999999999999999999999987643
Q ss_pred --hHHHHHHHHhc-------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcccc------CC
Q 012846 284 --NSELRRVLLST-------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWS------SC 348 (455)
Q Consensus 284 --~~~L~~ll~~~-------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~------~~ 348 (455)
...+..++... ..++||||||||.+........... ......+.|+..|++..- ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~---------~~~~~~~~Ll~~le~~~~~~~~~~~~ 165 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADV---------SREGVQRDLLPLVEGSTVSTKHGMVK 165 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHH---------HHHHHHHHHHHHHHCCEEEETTEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccch---------hHHHHHHHHHHHhcCCeEeccccccc
Confidence 24466665533 2479999999999865221100000 122235778888876410 01
Q ss_pred CCceEEEEe----cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012846 349 GDERIIVFT----TNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANY 395 (455)
Q Consensus 349 ~~~~iiI~t----TN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 395 (455)
...+++|++ ++.+..++|+|++ ||+.+|+|+.|+.+++..|++..
T Consensus 166 ~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 166 TDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp CTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred CCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhh
Confidence 134777877 5678899999998 99999999999999999999853
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.74 E-value=2.2e-17 Score=163.77 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=120.1
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~ 282 (455)
....|.+|++++|.++.++.+.+.+. . | ..+..+|++||||||||++++++|+.++.+++.++++...
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~----~-------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~ 85 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITS----K-------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK 85 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHH----T-------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHH----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC
Confidence 45778999999999999888877664 1 2 3356789999999999999999999999999999988765
Q ss_pred ChHHHHHHHHhc----C---CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEE
Q 012846 283 SNSELRRVLLST----G---NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIV 355 (455)
Q Consensus 283 ~~~~L~~ll~~~----~---~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI 355 (455)
...++..+... + .+.||+|||+|.+.. ....+.|+..++... ..+.+|
T Consensus 86 -~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------------------~~~~~~L~~~le~~~----~~~~iI 140 (324)
T 3u61_B 86 -IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------------------AESQRHLRSFMEAYS----SNCSII 140 (324)
T ss_dssp -HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------------------HHHHHHHHHHHHHHG----GGCEEE
T ss_pred -HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------------------HHHHHHHHHHHHhCC----CCcEEE
Confidence 55555554332 2 678999999998751 112355666666542 347888
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 356 FTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 356 ~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
+|||.+..++++|.+ |+. .+.|+.|+.+++..+++.++
T Consensus 141 ~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 141 ITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp EEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred EEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 999999999999999 885 79999999999877766554
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=9.1e-17 Score=155.63 Aligned_cols=167 Identities=21% Similarity=0.243 Sum_probs=114.0
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC---C----
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH---S---- 283 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~---~---- 283 (455)
+.+++.....+.+......+. ......+...++++||+||||||||++|+++|+.++.+++.+++++.. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 456666666566665422221 112223455678999999999999999999999999999999876532 1
Q ss_pred hHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCC
Q 012846 284 NSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 361 (455)
Q Consensus 284 ~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~ 361 (455)
...++.+|... ..++||||||||.++...... .. .....+..|+..+++... .+..++||+|||.+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~---------~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG--PR---------FSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRK 177 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT--TB---------CCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC--hh---------HHHHHHHHHHHHhcCccC-CCCCEEEEEecCCh
Confidence 14566666654 468999999999987532111 00 233445666666665432 24568899999999
Q ss_pred CCCCc-cccCCCceeeEEEeCCCCH-HHHHHHHHH
Q 012846 362 DRLDP-AVLRPGRMDVHIYMSYCTP-CGFDTLAAN 394 (455)
Q Consensus 362 ~~LD~-aLlrpgR~d~~I~~~~p~~-~~r~~l~~~ 394 (455)
+.+|+ .+.+ ||+..|++|.++. ++...++..
T Consensus 178 ~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 178 DVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp HHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred hhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 98888 5555 9999999988776 666666654
No 38
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.72 E-value=1.8e-16 Score=146.47 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=117.7
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEee
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLE 277 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~ 277 (455)
....|.+|++++|.++.++.+.+.+.. + ...++||+||||||||++++++++.+ ...++.++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 346788999999999888887766531 1 12359999999999999999999876 45688888
Q ss_pred ccccCChHHHHHHHHhc--------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCC
Q 012846 278 LSAVHSNSELRRVLLST--------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCG 349 (455)
Q Consensus 278 ~~~~~~~~~L~~ll~~~--------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~ 349 (455)
++.......+...+... ..+.||+|||+|.+.. .....|+..++.. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------~~~~~l~~~l~~~----~ 130 (226)
T 2chg_A 76 ASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------------DAQAALRRTMEMY----S 130 (226)
T ss_dssp TTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------------------HHHHHHHHHHHHT----T
T ss_pred cccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------------------HHHHHHHHHHHhc----C
Confidence 87766555555444321 4689999999998743 1234556666553 2
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 350 DERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 350 ~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
....+|+|||.++.+++++.+ |+. .++++.++.++...+++.++..
T Consensus 131 ~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHH
Confidence 357888999999999999998 887 8999999999999999887643
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.71 E-value=3.1e-18 Score=173.13 Aligned_cols=201 Identities=15% Similarity=0.209 Sum_probs=129.4
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhh-hCC-CCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCC------
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRR-VGK-AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHS------ 283 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~-~g~-~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~------ 283 (455)
.|+|.+..++.|...+............ .+. ..+.++||+||||||||++|++||+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3689999999998888654433211000 111 24578999999999999999999999999999999988753
Q ss_pred --hHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC--------
Q 012846 284 --NSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS-------- 347 (455)
Q Consensus 284 --~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~-------- 347 (455)
...+..++... ..++||||||||.+...+....... +. .....++.||..|||....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~--~~-----~~~~~~~~Ll~~leg~~~~~~~~~~~~ 168 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITR--DV-----SGEGVQQALLKLIEGTVAAVPPQGGRK 168 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---C--HH-----HHHHHHHHHHHHHHCC-----------
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccccccc--cc-----chHHHHHHHHHHhcCceeeccCccccc
Confidence 23455555544 3579999999999875322111100 00 1223678999999954210
Q ss_pred ---------CCCceEEEEecCCC----------CC-----------------------------------CCccccCCCc
Q 012846 348 ---------CGDERIIVFTTNHK----------DR-----------------------------------LDPAVLRPGR 373 (455)
Q Consensus 348 ---------~~~~~iiI~tTN~~----------~~-----------------------------------LD~aLlrpgR 373 (455)
...++++|+|+|.. .. +.|+|+. |
T Consensus 169 ~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R 246 (363)
T 3hws_A 169 HPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--R 246 (363)
T ss_dssp -----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--T
T ss_pred cCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--c
Confidence 11234455555432 11 6788887 9
Q ss_pred eeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhc----CCCCHHHHHHHH
Q 012846 374 MDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQN----VRVTPADVGEQL 425 (455)
Q Consensus 374 ~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~----~~~tpa~i~~~l 425 (455)
|+..+.++.|+.+.+..|+...+. .+..++...+.. ..+++.-+..++
T Consensus 247 ~~~~~~~~pl~~~~~~~I~~~~~~----~l~~~~~~~~~~~~~~l~~~~~a~~~L~ 298 (363)
T 3hws_A 247 LPVVATLNELSEEALIQILKEPKN----ALTKQYQALFNLEGVDLEFRDEALDAIA 298 (363)
T ss_dssp CCEEEECCCCCHHHHHHHHHSSTT----CHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred cCeeeecCCCCHHHHHHHHHHHHH----HHHHHHHHHHHhcCceEEECHHHHHHHH
Confidence 999999999999999999986332 233444444332 235665554443
No 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.6e-16 Score=168.05 Aligned_cols=170 Identities=16% Similarity=0.243 Sum_probs=118.9
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhc-hhHHhhhCC---CCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKR-KDYYRRVGK---AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~-~~~y~~~g~---~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
....|.+|++|+|.+..++.|.+.+..+... +..+...|. +.++++||+||||||||++|+++|+.++.+++.+++
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 4578899999999999999999888765432 223333333 256799999999999999999999999999999999
Q ss_pred cccCChHHHHHHHH-------------h-------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHh
Q 012846 279 SAVHSNSELRRVLL-------------S-------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLL 338 (455)
Q Consensus 279 ~~~~~~~~L~~ll~-------------~-------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 338 (455)
++..+...+...+. . ...++||||||+|.+.. ..+..+..|+
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~------------------~~~~~l~~L~ 172 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG------------------GDRGGVGQLA 172 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT------------------TSTTHHHHHH
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch------------------hhHHHHHHHH
Confidence 98876544433332 1 13678999999998864 1122345666
Q ss_pred hhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 339 NFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 339 ~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
+.++.. ...+|+|+++.....++ .+.| ....|.|+.|+.+++..++...+..
T Consensus 173 ~~l~~~----~~~iIli~~~~~~~~l~-~l~~---r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 173 QFCRKT----STPLILICNERNLPKMR-PFDR---VCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp HHHHHC----SSCEEEEESCTTSSTTG-GGTT---TSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHhc----CCCEEEEEcCCCCccch-hhHh---ceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 666542 11233333333334444 3444 4569999999999999888776543
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=2.1e-16 Score=159.18 Aligned_cols=184 Identities=16% Similarity=0.147 Sum_probs=123.6
Q ss_pred CCC-CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC--ceEEeeccccC
Q 012846 206 HPA-TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF--DIYDLELSAVH 282 (455)
Q Consensus 206 ~~~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~--~~~~l~~~~~~ 282 (455)
.|. +|++++|.+..++.+......... |...++++||+||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~--------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT--------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHc--------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 344 499999999998876554433321 4445689999999999999999999999975 67777754421
Q ss_pred C-------------------------------------------------------hHHHHHHHHhc-------C----C
Q 012846 283 S-------------------------------------------------------NSELRRVLLST-------G----N 296 (455)
Q Consensus 283 ~-------------------------------------------------------~~~L~~ll~~~-------~----~ 296 (455)
+ ...++..+... . .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 0 23344444222 1 2
Q ss_pred ceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec-----------CCCCCCC
Q 012846 297 RSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT-----------NHKDRLD 365 (455)
Q Consensus 297 ~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT-----------N~~~~LD 365 (455)
|+||||||||.+.. ..++.|+..++.. ...+++++|. |.+..++
T Consensus 190 ~~vl~IDEi~~l~~---------------------~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~ 244 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI---------------------ESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIP 244 (368)
T ss_dssp BCEEEEESGGGSBH---------------------HHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCC
T ss_pred CceEEEhhccccCh---------------------HHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCC
Confidence 68999999998742 2345566666543 1234444443 3578899
Q ss_pred ccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHH-HHHHhhcCC-CCHHHHHHHH
Q 012846 366 PAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYE-IKEIMQNVR-VTPADVGEQL 425 (455)
Q Consensus 366 ~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~-i~~l~~~~~-~tpa~i~~~l 425 (455)
++|++ ||.. ++|+.|+.+++..+++..+...+..+.++ ++.++.... .++.++..+|
T Consensus 245 ~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 245 IDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999 9976 89999999999999998876655444443 333343333 5666655544
No 42
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.69 E-value=1e-15 Score=142.93 Aligned_cols=183 Identities=14% Similarity=0.212 Sum_probs=128.4
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----------- 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----------- 271 (455)
....|..|++++|.+..++.|.+.+.. + ..++.++|+||||||||++++++++.++.
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 346788899999999988888776542 1 12357999999999999999999988753
Q ss_pred -------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchh
Q 012846 272 -------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQV 332 (455)
Q Consensus 272 -------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (455)
+++.++.........+..++.... .+.+|+|||+|.+.. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~---------------------~ 141 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------------H 141 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH---------------------H
T ss_pred cHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH---------------------H
Confidence 334444443333455667666542 478999999997632 2
Q ss_pred hHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH-HHHHHHh
Q 012846 333 TLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI-YEIKEIM 411 (455)
Q Consensus 333 ~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~ 411 (455)
.+..|+..++.. ....++|++||.+..+++++.+ |+ ..++++.++.++..++++.++...+..+. +.++.+.
T Consensus 142 ~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 142 SFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp HHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 345677777653 3458889999999999999988 75 68999999999999999988754433332 2334444
Q ss_pred hcCCCCHHHHHHHH
Q 012846 412 QNVRVTPADVGEQL 425 (455)
Q Consensus 412 ~~~~~tpa~i~~~l 425 (455)
...+..|..+...+
T Consensus 215 ~~~~G~~~~~~~~~ 228 (250)
T 1njg_A 215 RAAEGSLRDALSLT 228 (250)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHcCCCHHHHHHHH
Confidence 44444555554443
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=8.2e-17 Score=145.34 Aligned_cols=152 Identities=18% Similarity=0.245 Sum_probs=106.9
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceEE
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYD 275 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~ 275 (455)
.|.+|++++|.++..+.+.+.+.. ..+++++|+||||||||++++++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 467799999999888877765421 235689999999999999999999986 788888
Q ss_pred eeccccCC--------hHHHHHHHHh---cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc
Q 012846 276 LELSAVHS--------NSELRRVLLS---TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL 344 (455)
Q Consensus 276 l~~~~~~~--------~~~L~~ll~~---~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~ 344 (455)
+++..+.. ...+..++.. ...++||+|||+|.+....... ........|...++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~-------------~~~~~~~~l~~~~~~- 149 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-------------GAMDAGNMLKPALAR- 149 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------------------CCCCHHHHHHHHHT-
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc-------------chHHHHHHHHHhhcc-
Confidence 88766531 1234455443 3468899999999986532110 011112222233322
Q ss_pred ccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 012846 345 WSSCGDERIIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLA 392 (455)
Q Consensus 345 ~~~~~~~~iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~ 392 (455)
.++.+|++||.++ .+|+++.+ ||+ .|+++.|+.+++.+++
T Consensus 150 -----~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 -----GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -----TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred -----CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 2467888888876 78999999 998 6999999999988764
No 44
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.67 E-value=2.2e-16 Score=167.99 Aligned_cols=160 Identities=21% Similarity=0.190 Sum_probs=113.2
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChH----
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNS---- 285 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~---- 285 (455)
.++++|.+++++.+.+.+....... ...+..+||+||||||||+++++||+.++.++..++++.+....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~-------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK-------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS-------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc-------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 4568999999998876654322111 11345799999999999999999999999999999987754321
Q ss_pred -----------HHHHHHHhcC-CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC------
Q 012846 286 -----------ELRRVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS------ 347 (455)
Q Consensus 286 -----------~L~~ll~~~~-~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~------ 347 (455)
.+...|..+. ...||||||||.+..... ....+.||..||.....
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~-----------------~~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFR-----------------GDPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC--------------------------CCGGGTCTTTTTBCCCSS
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhc-----------------cCHHHHHHHHHhhhhcceeeccc
Confidence 2334444442 456999999999865211 11235566666643211
Q ss_pred -----CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 348 -----CGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 348 -----~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
.-..++||+|||.++.+||+|++ ||+ .|+++.|+.+++..|++.++
T Consensus 216 ~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 216 IEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred CCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 01357999999999999999999 996 69999999999999999887
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.67 E-value=1.5e-15 Score=157.74 Aligned_cols=151 Identities=21% Similarity=0.336 Sum_probs=112.4
Q ss_pred cCCCCCcccccccHHHH---HHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccc
Q 012846 204 FNHPATFDTLAMEAELK---KMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA 280 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k---~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~ 280 (455)
...|.+|++++|.+.++ +.+...+.. |. ..++||+||||||||++|++||+.++.+++.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 45788999999999887 555544431 11 258999999999999999999999999999998766
Q ss_pred cCChHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEE
Q 012846 281 VHSNSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERII 354 (455)
Q Consensus 281 ~~~~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ii 354 (455)
. ....++.++..+ ..++||||||||.+.. .....||..++. ..+++
T Consensus 86 ~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~---------------------~~q~~LL~~le~------~~v~l 137 (447)
T 3pvs_A 86 S-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK---------------------SQQDAFLPHIED------GTITF 137 (447)
T ss_dssp C-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------------CCHHHHHT------TSCEE
T ss_pred C-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------------------HHHHHHHHHHhc------CceEE
Confidence 4 345566666443 3689999999998743 112457777764 23555
Q ss_pred EEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 355 VFTT--NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 355 I~tT--N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
|++| |....++++|++ |+. .+.++.|+.+++..+++.++..
T Consensus 138 I~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred EecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 5544 444689999999 886 6779999999999999998765
No 46
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.65 E-value=7.3e-16 Score=151.47 Aligned_cols=160 Identities=15% Similarity=0.187 Sum_probs=117.7
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEee
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLE 277 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~ 277 (455)
....|.+|++++|.+..++.+.+.+. . |. ..++|||||||||||++++++|+.+ +.+++.++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVE----R-------KN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTT----T-------TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHh----C-------CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 45678899999999988887766542 1 11 2249999999999999999999986 45678888
Q ss_pred ccccCChHHHHHHH---H-hc----CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCC
Q 012846 278 LSAVHSNSELRRVL---L-ST----GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCG 349 (455)
Q Consensus 278 ~~~~~~~~~L~~ll---~-~~----~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~ 349 (455)
+++......++..+ . .. ..+.||+|||+|.+.. ...+.|+..++.. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------~~~~~L~~~le~~----~ 130 (319)
T 2chq_A 76 ASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------------DAQAALRRTMEMY----S 130 (319)
T ss_dssp TTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---------------------HHHHTTGGGTSSS----S
T ss_pred CccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---------------------HHHHHHHHHHHhc----C
Confidence 87654333332222 1 11 3578999999998743 1234566666543 3
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc
Q 012846 350 DERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL 403 (455)
Q Consensus 350 ~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 403 (455)
...++|++||.+..+++++.+ |+. .+.++.|+.+++..++...+...+..+
T Consensus 131 ~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i 181 (319)
T 2chq_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKI 181 (319)
T ss_dssp SSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCB
T ss_pred CCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 457888999999999999998 875 899999999999999998876554443
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.65 E-value=1.1e-15 Score=150.11 Aligned_cols=160 Identities=16% Similarity=0.268 Sum_probs=114.6
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHHH
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSEL 287 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~L 287 (455)
+.++|.+..++.|...+......-. . ...+...+||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---C-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 4578999999988888765432100 0 01112369999999999999999999988 567999999887544333
Q ss_pred HHHH------------------HhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCC
Q 012846 288 RRVL------------------LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCG 349 (455)
Q Consensus 288 ~~ll------------------~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~ 349 (455)
..++ .....++||||||+|.+.. ...+.|+..|+.-.-..+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------------~~~~~Ll~~le~~~~~~~ 151 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP---------------------DVFNILLQMLDDGRLTDS 151 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH---------------------HHHHHHHHHHHHSEEECT
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH---------------------HHHHHHHHHHhcCEEEcC
Confidence 2222 1112458999999997743 234667777764321111
Q ss_pred -------CceEEEEecCC--------------------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 350 -------DERIIVFTTNH--------------------------KDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 350 -------~~~iiI~tTN~--------------------------~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
.+.++|+|||. ...++|+|+. ||+..+.+++|+.+++..|++.++
T Consensus 152 ~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 152 HGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp TSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHT
T ss_pred CCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 25789999998 4578899998 999999999999999999999887
Q ss_pred C
Q 012846 397 G 397 (455)
Q Consensus 397 ~ 397 (455)
.
T Consensus 230 ~ 230 (311)
T 4fcw_A 230 S 230 (311)
T ss_dssp H
T ss_pred H
Confidence 4
No 48
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=2.9e-15 Score=147.45 Aligned_cols=155 Identities=12% Similarity=0.168 Sum_probs=116.9
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEee
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLE 277 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~ 277 (455)
....|.+|++++|.+..++.+.+.+. . | ..+. +|||||||||||++++++|+.+ +.+++.++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAK----D-------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHH----S-------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHH----c-------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 44678899999999998888776653 1 2 2233 9999999999999999999986 45678888
Q ss_pred ccccCChHHHHHHHHhc--------C-CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCC
Q 012846 278 LSAVHSNSELRRVLLST--------G-NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSC 348 (455)
Q Consensus 278 ~~~~~~~~~L~~ll~~~--------~-~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~ 348 (455)
+++......++.++... . .+.||+|||+|.+.. ...+.|+..++..
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------------~~~~~L~~~le~~---- 134 (323)
T 1sxj_B 80 ASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------------GAQQALRRTMELY---- 134 (323)
T ss_dssp TTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------------HHHHTTHHHHHHT----
T ss_pred CccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------------HHHHHHHHHHhcc----
Confidence 77655555666555421 2 478999999998743 1234566666543
Q ss_pred CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 349 GDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 349 ~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
....++|++||.+..+++++.+ |+. .+.++.|+.++...+++..+..
T Consensus 135 ~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 135 SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHH
Confidence 2357788889999999999998 775 8999999999999999877643
No 49
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.62 E-value=2e-15 Score=153.16 Aligned_cols=173 Identities=17% Similarity=0.262 Sum_probs=113.0
Q ss_pred cccccHHHHHHHHHHHHHHHhchhH------------------HhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCce
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDY------------------YRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDI 273 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~------------------y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~ 273 (455)
.|+|.+.+|+.|...+......... +.. ....+.++||+||||||||++|+++|+.++.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4799999999998877543332211 111 123456899999999999999999999999999
Q ss_pred EEeeccccCC--------hHHHHHHHHhc------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhh
Q 012846 274 YDLELSAVHS--------NSELRRVLLST------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLN 339 (455)
Q Consensus 274 ~~l~~~~~~~--------~~~L~~ll~~~------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 339 (455)
+.++++.+.. ...+..++... ..++||||||||.+...+....... +. .....++.|+.
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~--~~-----~~~~~~~~Ll~ 173 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITR--DV-----SGEGVQQALLK 173 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------------CHHHHHHHHH
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceec--cc-----chHHHHHHHHH
Confidence 9999887641 23345555433 2679999999999875321111000 00 12235788888
Q ss_pred hhhccc----cC-------------CCCceEEEEecCC-----------------------------------------C
Q 012846 340 FLDGLW----SS-------------CGDERIIVFTTNH-----------------------------------------K 361 (455)
Q Consensus 340 ~lDg~~----~~-------------~~~~~iiI~tTN~-----------------------------------------~ 361 (455)
.||+.. .. ...++++|+|||. .
T Consensus 174 ~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 253 (376)
T 1um8_A 174 IVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVT 253 (376)
T ss_dssp HHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHH
T ss_pred HhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhh
Confidence 888641 00 0134577777762 0
Q ss_pred CCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 012846 362 DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAAN 394 (455)
Q Consensus 362 ~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~ 394 (455)
..+.|+|+. |++..+.|+.++.++...++..
T Consensus 254 ~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 254 YGLIPELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp TTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred cCCChHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 124567777 9989999999999999998874
No 50
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=5.6e-15 Score=145.62 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=116.7
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC-----CceEEee
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN-----FDIYDLE 277 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~-----~~~~~l~ 277 (455)
....|.+|++++|.++.++.+...+.. |. ..++||+||||||||++++++|+.+. .+++.++
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~ 83 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN 83 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee
Confidence 457788999999999998888765532 11 23599999999999999999999863 3477777
Q ss_pred ccccCChHHHHHHHH----hc----CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCC
Q 012846 278 LSAVHSNSELRRVLL----ST----GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCG 349 (455)
Q Consensus 278 ~~~~~~~~~L~~ll~----~~----~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~ 349 (455)
+++......++..+. .. ..+.||+|||+|.+.. ...+.|+..++.. .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------~~~~~L~~~le~~----~ 138 (327)
T 1iqp_A 84 ASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------------DAQQALRRTMEMF----S 138 (327)
T ss_dssp TTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------------HHHHHHHHHHHHT----T
T ss_pred ccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------------------HHHHHHHHHHHhc----C
Confidence 765432222222221 11 3578999999998743 1245667776653 2
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCc
Q 012846 350 DERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPL 403 (455)
Q Consensus 350 ~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l 403 (455)
....+|++||.+..+++++.+ |+. .+.++.++.++...+++..+...+..+
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~ 189 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLEL 189 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEE
T ss_pred CCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 357788899999999999988 886 899999999999999988776554433
No 51
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.62 E-value=1.7e-15 Score=150.30 Aligned_cols=184 Identities=14% Similarity=0.218 Sum_probs=116.2
Q ss_pred cCCCCCccccc-ccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecc
Q 012846 204 FNHPATFDTLA-MEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELS 279 (455)
Q Consensus 204 ~~~~~~f~~l~-g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~ 279 (455)
+++..+|++++ |.... .. ...+......+ + ....+++||||||||||++++++++.+ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~~-~a-~~~~~~~~~~~------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNR-LA-YEVVKEALENL------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTTH-HH-HHHHHHHHHTT------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcHH-HH-HHHHHHHHhCc------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 44566899997 43322 11 12233333322 1 134689999999999999999999998 8999999987
Q ss_pred ccCCh--H-----HHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCce
Q 012846 280 AVHSN--S-----ELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDER 352 (455)
Q Consensus 280 ~~~~~--~-----~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~ 352 (455)
.+... . .+..+......+.||||||||.+... ......|+..++..... +.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~-------------------~~~~~~l~~~l~~~~~~--~~~ 133 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK-------------------ERTQIEFFHIFNTLYLL--EKQ 133 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC-------------------HHHHHHHHHHHHHHHHT--TCE
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCC-------------------hHHHHHHHHHHHHHHHC--CCe
Confidence 65311 0 01111222235899999999987531 11234455555544332 236
Q ss_pred EEEEecCCCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHH-HHHhhcCCCCHHHH
Q 012846 353 IIVFTTNHKD---RLDPAVLRPGRMD--VHIYMSYCTPCGFDTLAANYLGITDHPLIYEI-KEIMQNVRVTPADV 421 (455)
Q Consensus 353 iiI~tTN~~~---~LD~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i-~~l~~~~~~tpa~i 421 (455)
+|+.+++.+. .++++|.+ ||+ ..++++. +.+++..+++.++...+..+.++. +.++... ....++
T Consensus 134 iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 134 IILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp EEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHH
T ss_pred EEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHH
Confidence 6666766665 68999998 886 7899999 999999999998765444444433 3333333 344443
No 52
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.61 E-value=1.2e-14 Score=146.20 Aligned_cols=157 Identities=16% Similarity=0.267 Sum_probs=117.0
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF----------- 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~----------- 271 (455)
....|.+|++++|.+..++.+...+.. | ..+..+||+||||||||++++++|+.++.
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 346788999999999988888776531 1 22457999999999999999999998864
Q ss_pred -------------ceEEeeccccCChHHHHHHHHhcC------CceEEEEeccccccccccccCCCccccccCCCccchh
Q 012846 272 -------------DIYDLELSAVHSNSELRRVLLSTG------NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQV 332 (455)
Q Consensus 272 -------------~~~~l~~~~~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (455)
+++.++.........++.++.... .+.||+|||+|.+.. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~---------------------~ 134 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------------H 134 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH---------------------H
T ss_pred cHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH---------------------H
Confidence 345555443222345666665542 468999999997632 2
Q ss_pred hHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 333 TLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 333 ~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
.++.|+..++.. ...+++|++||.+..+++++.+ |+ ..+.++.|+.++...+++.++...
T Consensus 135 ~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~ 194 (373)
T 1jr3_A 135 SFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE 194 (373)
T ss_dssp HHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 346677777653 3458888899999999999988 76 689999999999999998877543
No 53
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.61 E-value=3.9e-15 Score=148.08 Aligned_cols=153 Identities=13% Similarity=0.179 Sum_probs=108.6
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHH
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSEL 287 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L 287 (455)
..+++++|.++.++.+...+.. +.++||+||||||||++|+++|+.++.+++.++++......++
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 3467889999888777665431 2589999999999999999999999999999987533222222
Q ss_pred HHHHH-h--------cCC---ceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc-------ccCC
Q 012846 288 RRVLL-S--------TGN---RSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL-------WSSC 348 (455)
Q Consensus 288 ~~ll~-~--------~~~---~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~-------~~~~ 348 (455)
..... . ... .+||||||+|.+.. ...+.|+..|+.- ....
T Consensus 89 ~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~---------------------~~~~~Ll~~l~~~~~~~~g~~~~~ 147 (331)
T 2r44_A 89 IGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA---------------------KVQSALLECMQEKQVTIGDTTYPL 147 (331)
T ss_dssp HEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH---------------------HHHHHHHHHHHHSEEEETTEEEEC
T ss_pred CCceeecCCCCceEeccCcccccEEEEEccccCCH---------------------HHHHHHHHHHhcCceeeCCEEEEC
Confidence 11000 0 011 37999999997643 2234555555421 1112
Q ss_pred CCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 349 GDERIIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 349 ~~~~iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
+..++||+|+|..+ .++++|++ ||+.++.+++|+.+++.+|++..+..
T Consensus 148 ~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 148 DNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 23467778888543 38999999 99999999999999999999998765
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.61 E-value=1.9e-15 Score=142.08 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=105.0
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC---CceEEeeccc
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDIYDLELSA 280 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~---~~~~~l~~~~ 280 (455)
+.++.+|+++++.+. .+.+++.+..+... +.+++++|+||||||||++++++++.+. .+++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 21 LPDDETFTSYYPAAG-NDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCTTCSTTTSCC--C-CHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCCCChhhccCCCC-CHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 444578999998321 12333444444332 1357899999999999999999998774 7788888877
Q ss_pred cCChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCce-EEEEecC
Q 012846 281 VHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDER-IIVFTTN 359 (455)
Q Consensus 281 ~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~-iiI~tTN 359 (455)
+... +.+.+.....+.+|+|||+|.+.. . ......|+..++..... ... +|+.+++
T Consensus 91 ~~~~--~~~~~~~~~~~~vliiDe~~~~~~------------------~-~~~~~~l~~~l~~~~~~--~~~~ii~~~~~ 147 (242)
T 3bos_A 91 HASI--STALLEGLEQFDLICIDDVDAVAG------------------H-PLWEEAIFDLYNRVAEQ--KRGSLIVSASA 147 (242)
T ss_dssp GGGS--CGGGGTTGGGSSEEEEETGGGGTT------------------C-HHHHHHHHHHHHHHHHH--CSCEEEEEESS
T ss_pred HHHH--HHHHHHhccCCCEEEEeccccccC------------------C-HHHHHHHHHHHHHHHHc--CCCeEEEEcCC
Confidence 5421 222233345689999999998743 1 11123455555543322 123 4444444
Q ss_pred CCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 360 HKD---RLDPAVLRPGRMD--VHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 360 ~~~---~LD~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
.+. .+++++.+ |+. ..++++.|+.+++..+++.++...
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~ 190 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMR 190 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHT
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHc
Confidence 444 45688888 775 899999999999999999887543
No 55
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.60 E-value=4.6e-15 Score=149.39 Aligned_cols=163 Identities=18% Similarity=0.124 Sum_probs=114.9
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---------CCceEEe
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---------NFDIYDL 276 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---------~~~~~~l 276 (455)
+...+++++|.++..+.+.+.+...+. ...+++++|+||||||||++++++++.+ +.+++.+
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 334458899999888888776543221 1235689999999999999999999988 7888889
Q ss_pred eccccCCh----------------------HH-HHHHHHh---cCCceEEEEeccccccccccccCCCccccccCCCccc
Q 012846 277 ELSAVHSN----------------------SE-LRRVLLS---TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPM 330 (455)
Q Consensus 277 ~~~~~~~~----------------------~~-L~~ll~~---~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~ 330 (455)
++....+. .. +..++.. ...++||+|||+|.+.... ..
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------------~~ 148 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------------GG 148 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------------TH
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------------CC
Confidence 88764321 22 2222222 2357899999999886410 02
Q ss_pred hhhHhhHhhhhhccccCCCCceEEEEecCCC---CCCCccccCCCceee-EEEeCCCCHHHHHHHHHHHcC
Q 012846 331 QVTLSGLLNFLDGLWSSCGDERIIVFTTNHK---DRLDPAVLRPGRMDV-HIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 331 ~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~---~~LD~aLlrpgR~d~-~I~~~~p~~~~r~~l~~~~l~ 397 (455)
+..+..+++.++.... +..+++|++||.+ +.+++++.+ |+.. .++++.++.++...+++..+.
T Consensus 149 ~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 149 QDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp HHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred ChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 3445666665543310 2357889999987 788999998 8865 899999999999999998764
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=4.8e-15 Score=147.99 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=115.1
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC------CceEEe
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN------FDIYDL 276 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~------~~~~~l 276 (455)
....|.+|++++|.++.++.+...+. . |. ..++||+||||||||++++++|+.++ ..+..+
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 95 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLK----S-------AN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILEL 95 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTT----C-------TT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHh----c-------CC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEE
Confidence 45678899999999988877765542 1 11 13499999999999999999998864 467888
Q ss_pred eccccCChHHHHHHHH---h---------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHh
Q 012846 277 ELSAVHSNSELRRVLL---S---------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLL 338 (455)
Q Consensus 277 ~~~~~~~~~~L~~ll~---~---------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 338 (455)
++++......+++.+. . ...+.||+|||+|.+.. ...+.|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---------------------~~~~~Ll 154 (353)
T 1sxj_D 96 NASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------------------DAQSALR 154 (353)
T ss_dssp CSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH---------------------HHHHHHH
T ss_pred ccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH---------------------HHHHHHH
Confidence 8877544444433321 1 12457999999998743 1235677
Q ss_pred hhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCC
Q 012846 339 NFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITD 400 (455)
Q Consensus 339 ~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~ 400 (455)
..|+... ....+|++||++..+++++.+ |+. .+.++.++.++...+++..+...+
T Consensus 155 ~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~ 209 (353)
T 1sxj_D 155 RTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQEN 209 (353)
T ss_dssp HHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred HHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhC
Confidence 7776542 236677788999999999998 886 899999999999999888765443
No 57
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.59 E-value=2.3e-15 Score=135.57 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=101.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceE
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIY 274 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~ 274 (455)
..|.+|++++|.+...+.+.+.+.. ..++++||+||||||||++++++++.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 3467899999999877777665421 235689999999999999999999987 77888
Q ss_pred EeeccccCC--------hHHHHHHHHh---cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhc
Q 012846 275 DLELSAVHS--------NSELRRVLLS---TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG 343 (455)
Q Consensus 275 ~l~~~~~~~--------~~~L~~ll~~---~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg 343 (455)
.+++..+.. ...+.+++.. ...+.||+|||+|.+...... .. .....+..|+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~-~~-----------~~~~~~~~l~~~~~~ 150 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV-AE-----------GALDAGNILKPMLAR 150 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS-CT-----------TSCCTHHHHHHHHHT
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc-cc-----------cchHHHHHHHHHHhc
Confidence 888765421 1234444433 346789999999998642210 00 111223334444432
Q ss_pred cccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCC
Q 012846 344 LWSSCGDERIIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCT 384 (455)
Q Consensus 344 ~~~~~~~~~iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~ 384 (455)
..+++|++||.++ .+|+++.+ ||+. |+++.|+
T Consensus 151 ------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 151 ------GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ------TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ------CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 3477888898765 68999999 9984 9999885
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.59 E-value=8.1e-15 Score=161.91 Aligned_cols=158 Identities=15% Similarity=0.220 Sum_probs=113.4
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCc-eeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCCh--
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKR-GYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSN-- 284 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~r-giLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~-- 284 (455)
+.++|.+..++.|.+.+......- . ....+. ++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~--~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---K--DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---S--CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---C--CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 468899999988888776542210 0 001122 59999999999999999999997 788999999988632
Q ss_pred ---HHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC-------CCCceEE
Q 012846 285 ---SELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS-------CGDERII 354 (455)
Q Consensus 285 ---~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~-------~~~~~ii 354 (455)
..+...+.. ..++||||||||.+.+ ..++.|+..||.-.-. ...+++|
T Consensus 566 ~~~~~l~~~~~~-~~~~vl~lDEi~~~~~---------------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~i 623 (758)
T 3pxi_A 566 TSGGQLTEKVRR-KPYSVVLLDAIEKAHP---------------------DVFNILLQVLEDGRLTDSKGRTVDFRNTIL 623 (758)
T ss_dssp CC---CHHHHHH-CSSSEEEEECGGGSCH---------------------HHHHHHHHHHHHSBCC-----CCBCTTCEE
T ss_pred cccchhhHHHHh-CCCeEEEEeCccccCH---------------------HHHHHHHHHhccCeEEcCCCCEeccCCeEE
Confidence 233333332 3578999999997632 3457777777752110 1135789
Q ss_pred EEecCCCCC------------CCccccCCCceeeEEEeCCCCHHHHHHHHHHHcC
Q 012846 355 VFTTNHKDR------------LDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 355 I~tTN~~~~------------LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
|+|||.+.. ++|+|+. |||..|.|++|+.+++..|++.++.
T Consensus 624 I~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 624 IMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp EEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred EEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 999997654 7888888 9999999999999999999998773
No 59
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.58 E-value=8.1e-14 Score=139.26 Aligned_cols=192 Identities=18% Similarity=0.202 Sum_probs=131.7
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH 282 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~ 282 (455)
..-.|.+|++++|.+.+++.+...+..-.. .|.+ +..++|+||||||||+|++++|+.++.++...+.....
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~-~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKM-------RGEV-LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCC-CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHh-------cCCC-CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 345677899999988777766554432211 1222 35799999999999999999999999988777766655
Q ss_pred ChHHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc------cC--------C
Q 012846 283 SNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW------SS--------C 348 (455)
Q Consensus 283 ~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~------~~--------~ 348 (455)
...++..++.....+.|++|||++.+... ....|+..++... .. .
T Consensus 89 ~~~~l~~~~~~~~~~~v~~iDE~~~l~~~---------------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 89 KQGDMAAILTSLERGDVLFIDEIHRLNKA---------------------VEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp SHHHHHHHHHHCCTTCEEEEETGGGCCHH---------------------HHHHHHHHHHTSCCCC--------------
T ss_pred CHHHHHHHHHHccCCCEEEEcchhhcCHH---------------------HHHHHHHHHHhcccceeeccCccccccccc
Confidence 56677777666667889999999987530 0111222222110 00 0
Q ss_pred CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 012846 349 GDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLI-YEIKEIMQNVRVTPADVGEQL 425 (455)
Q Consensus 349 ~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~~~tpa~i~~~l 425 (455)
-..+.++.+||++..|++++.+ ||...+.+++++.+++..+++.........+. +.+..++....-+|..+..+|
T Consensus 148 l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred CCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 0135667799999999999999 99999999999999999999887643333333 334555555566776655544
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=2.3e-14 Score=144.63 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=111.7
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-----------CCceEEeecc
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----------NFDIYDLELS 279 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-----------~~~~~~l~~~ 279 (455)
++++|.++..+.+.+.+...... ..+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999998887665432 224689999999999999999999987 8899999876
Q ss_pred ccC-Ch-----------------------HH-HHHHHHhcC-CceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 280 AVH-SN-----------------------SE-LRRVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 280 ~~~-~~-----------------------~~-L~~ll~~~~-~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
... +. .. +..++.... .+.||+|||+|.+... .....
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~-----------------~~~~~ 153 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKR-----------------RGGDI 153 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHS-----------------TTSHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccC-----------------CCCce
Confidence 644 21 12 222222222 3349999999988541 11222
Q ss_pred -HhhHhhhhhccccCCCCceEEEEecCCC---CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcC
Q 012846 334 -LSGLLNFLDGLWSSCGDERIIVFTTNHK---DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 334 -ls~LL~~lDg~~~~~~~~~iiI~tTN~~---~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
+..|+... .++.+|+|||.+ +.+++++.+ ||...|+++.++.++...+++.++.
T Consensus 154 ~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 154 VLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp HHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred eHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 34444432 347888999987 788999988 8877999999999999999998764
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.57 E-value=1.6e-14 Score=159.59 Aligned_cols=154 Identities=17% Similarity=0.292 Sum_probs=113.9
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCC---CC-ceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCCh---
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKA---WK-RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSN--- 284 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~---~~-rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~--- 284 (455)
.++|.++.++.|...+.... .|.. .+ ..+||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~--------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMAR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHH--------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 57788888887777664332 2221 12 369999999999999999999999999999999887431
Q ss_pred ----------------HHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc--c
Q 012846 285 ----------------SELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW--S 346 (455)
Q Consensus 285 ----------------~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~--~ 346 (455)
..+...+.. ..++||||||||.+.+ ..++.|+..||.-. .
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~~---------------------~~~~~Ll~~le~~~~~~ 588 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAHP---------------------DVFNILLQVMDNGTLTD 588 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSCH---------------------HHHHHHHHHHHHSEEEE
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccCH---------------------HHHHHHHHHhcCcEEEc
Confidence 123333333 4579999999997632 34677788777321 1
Q ss_pred CCC-----CceEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 347 SCG-----DERIIVFTTNHKD-------------------------RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 347 ~~~-----~~~iiI~tTN~~~-------------------------~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
..| .+++||+|||... .++|+|+. |||..|.|+.++.+++..|++.++
T Consensus 589 ~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 589 NNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp TTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHH
Confidence 111 3578999999754 57888988 999999999999999999999887
Q ss_pred C
Q 012846 397 G 397 (455)
Q Consensus 397 ~ 397 (455)
.
T Consensus 667 ~ 667 (758)
T 1r6b_X 667 V 667 (758)
T ss_dssp H
T ss_pred H
Confidence 4
No 62
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.1e-14 Score=140.14 Aligned_cols=200 Identities=11% Similarity=0.086 Sum_probs=128.2
Q ss_pred ccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceEEeeccccC
Q 012846 213 LAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIYDLELSAVH 282 (455)
Q Consensus 213 l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~~l~~~~~~ 282 (455)
|.+.++..++|...+...+.. ..+.+++||||||||||++++++++.+ ++.++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 455566666666666555433 346789999999999999999999998 4567888877653
Q ss_pred C----------------------hHHHHHHHHhc----CCceEEEEeccccccccccccCCCccccccCCCccchhhHhh
Q 012846 283 S----------------------NSELRRVLLST----GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSG 336 (455)
Q Consensus 283 ~----------------------~~~L~~ll~~~----~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 336 (455)
+ ...+.++|... ..++||+|||+|.+.. +..+-.
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~--------------------q~~L~~ 152 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS--------------------EKILQY 152 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC--------------------THHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc--------------------chHHHH
Confidence 2 23456666653 3578999999998851 123444
Q ss_pred HhhhhhccccCCCCceEEEEecCCCCCC----CccccCCCcee-eEEEeCCCCHHHHHHHHHHHcCCCCCCcH-------
Q 012846 337 LLNFLDGLWSSCGDERIIVFTTNHKDRL----DPAVLRPGRMD-VHIYMSYCTPCGFDTLAANYLGITDHPLI------- 404 (455)
Q Consensus 337 LL~~lDg~~~~~~~~~iiI~tTN~~~~L----D~aLlrpgR~d-~~I~~~~p~~~~r~~l~~~~l~~~~~~l~------- 404 (455)
|++... .....++||+++|..+.. ++++.+ ||. ..|.|+.++.++...|++.-+.......+
T Consensus 153 l~~~~~----~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~ 226 (318)
T 3te6_A 153 FEKWIS----SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKK 226 (318)
T ss_dssp HHHHHH----CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTC
T ss_pred HHhccc----ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccc
Confidence 554322 122458899999988653 455566 886 68999999999999999987643211100
Q ss_pred ---------H-HHHHHhh-----cCCCCHHHHHHHHH----cCCCHHHHHHHHHHHHHHHhh
Q 012846 405 ---------Y-EIKEIMQ-----NVRVTPADVGEQLL----KNEDPEIALKGLLEFLNAKLI 447 (455)
Q Consensus 405 ---------~-~i~~l~~-----~~~~tpa~i~~~l~----~~~~~~~al~~l~~~l~~~~~ 447 (455)
+ .-+..-. ...++++-|.-+.. .++|...||+-+..+.+....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~ 288 (318)
T 3te6_A 227 EMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKK 288 (318)
T ss_dssp CEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Confidence 0 0000000 01245554433332 368999999988888765544
No 63
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=2.1e-14 Score=143.76 Aligned_cols=183 Identities=14% Similarity=0.151 Sum_probs=119.4
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-CC----------
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-NF---------- 271 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-~~---------- 271 (455)
...+|.+|++++|.+..++.+...+. . .| ..+. ++|+||||||||++++++|+.+ +.
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSD---Q-------PR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTT---C-------TT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHh---h-------CC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 45789999999999988776655430 1 12 2233 9999999999999999999964 21
Q ss_pred ------------------ceEEeeccccCChH--HHHHHHHhc----------------CCceEEEEecccccccccccc
Q 012846 272 ------------------DIYDLELSAVHSNS--ELRRVLLST----------------GNRSILVVEDIDCSLELEDRQ 315 (455)
Q Consensus 272 ------------------~~~~l~~~~~~~~~--~L~~ll~~~----------------~~~sIlliDeiD~l~~~~~~~ 315 (455)
+++.++.+...... .+++.+... .++.||+|||+|.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~----- 148 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK----- 148 (354)
T ss_dssp ------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-----
T ss_pred eecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-----
Confidence 12334333322111 345544332 2567999999998422
Q ss_pred CCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHH
Q 012846 316 AQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANY 395 (455)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~ 395 (455)
...+.|+..|+... .+..+|++||.++.+.+++.+ |+ ..+.|+.|+.+++..+++..
T Consensus 149 ----------------~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 149 ----------------DAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp ----------------HHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHH
Confidence 12355666666542 347888899999999999998 88 78999999999999999987
Q ss_pred cCCCCCCcH--HHHHHHhhcCCCCHHHHHHHH
Q 012846 396 LGITDHPLI--YEIKEIMQNVRVTPADVGEQL 425 (455)
Q Consensus 396 l~~~~~~l~--~~i~~l~~~~~~tpa~i~~~l 425 (455)
+..++..+. +.++.++...+.++.++...|
T Consensus 206 ~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 206 VTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 754433332 234444444444555544433
No 64
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.56 E-value=1.7e-14 Score=149.50 Aligned_cols=159 Identities=15% Similarity=0.267 Sum_probs=106.7
Q ss_pred cCCCCCccccc-ccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEee
Q 012846 204 FNHPATFDTLA-MEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLE 277 (455)
Q Consensus 204 ~~~~~~f~~l~-g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~ 277 (455)
+++..+|++++ |..... ....+......+ |. ..+++||||||||||+|++++|+.+ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 45556899987 543322 223333333322 21 5689999999999999999999988 88899998
Q ss_pred ccccCChHHHH---------HHHHhcC-CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC
Q 012846 278 LSAVHSNSELR---------RVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS 347 (455)
Q Consensus 278 ~~~~~~~~~L~---------~ll~~~~-~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~ 347 (455)
+..+. ..+. .+..... .+.||||||+|.+... ..+...|+..++.+...
T Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~-------------------~~~q~~l~~~l~~l~~~ 226 (440)
T 2z4s_A 168 SEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK-------------------TGVQTELFHTFNELHDS 226 (440)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC-------------------HHHHHHHHHHHHHHHTT
T ss_pred HHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC-------------------hHHHHHHHHHHHHHHHC
Confidence 87653 1222 2222234 7899999999987531 12234455555554332
Q ss_pred CCCceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHHcC
Q 012846 348 CGDERIIVFTTNHKDR---LDPAVLRPGRMD--VHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 348 ~~~~~iiI~tTN~~~~---LD~aLlrpgR~d--~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
+..+||.|.+.+.. ++++|++ ||+ ..+.++.|+.+++..+++..+.
T Consensus 227 --~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 227 --GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp --TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred --CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 23555545444554 8899998 886 8899999999999999998775
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.56 E-value=1e-13 Score=133.47 Aligned_cols=154 Identities=15% Similarity=0.169 Sum_probs=102.1
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC---CceEEeeccccCCh
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDIYDLELSAVHSN 284 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~---~~~~~l~~~~~~~~ 284 (455)
.+|++++|.....+.+.+.+..... .+.++||+||||||||++|+++++.+. .+++.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~- 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE- 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-
Confidence 3699999999998888887765532 246899999999999999999999875 6899999998742
Q ss_pred HHHHHHHH------------------hcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-
Q 012846 285 SELRRVLL------------------STGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW- 345 (455)
Q Consensus 285 ~~L~~ll~------------------~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~- 345 (455)
..+...+. ....+++|||||||.+.. .....|+..++.-.
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~---------------------~~q~~Ll~~l~~~~~ 129 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM---------------------MVQEKLLRVIEYGEL 129 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH---------------------HHHHHHHHHHHHCEE
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH---------------------HHHHHHHHHHHhCCe
Confidence 22222221 113468999999998743 12345566655311
Q ss_pred cCC------CCceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHHc
Q 012846 346 SSC------GDERIIVFTTNHK-------DRLDPAVLRPGRMD-VHIYMSYCTP--CGFDTLAANYL 396 (455)
Q Consensus 346 ~~~------~~~~iiI~tTN~~-------~~LD~aLlrpgR~d-~~I~~~~p~~--~~r~~l~~~~l 396 (455)
... ...+.||+|||.+ ..++++|.. ||+ ..|.+|.... ++...+++.++
T Consensus 130 ~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 130 ERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp CCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred ecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 000 1246788899874 357888888 885 5677777765 66777777665
No 66
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.55 E-value=3.6e-14 Score=141.57 Aligned_cols=153 Identities=20% Similarity=0.257 Sum_probs=100.1
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-------c-----
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF-------D----- 272 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~-------~----- 272 (455)
..+.+|++++|.+..++.+...+ . . +...++||+||||||||++|+++|+.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~---~-~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA---V-D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH---H-C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHh---h-C---------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 45678999999988776542221 1 1 11346999999999999999999999863 1
Q ss_pred ---------------------eEEeeccccCChHHH------HHHHHhc-----------CCceEEEEeccccccccccc
Q 012846 273 ---------------------IYDLELSAVHSNSEL------RRVLLST-----------GNRSILVVEDIDCSLELEDR 314 (455)
Q Consensus 273 ---------------------~~~l~~~~~~~~~~L------~~ll~~~-----------~~~sIlliDeiD~l~~~~~~ 314 (455)
++.+..+. +...+ ...+... ..++||||||||.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---- 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED---- 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----
T ss_pred cccccchhhhhccccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----
Confidence 22211111 11121 2222221 1478999999998743
Q ss_pred cCCCccccccCCCccchhhHhhHhhhhhcc---ccCCC------CceEEEEecCCCC-CCCccccCCCceeeEEEeCCC-
Q 012846 315 QAQPTTVNVLKPLRPMQVTLSGLLNFLDGL---WSSCG------DERIIVFTTNHKD-RLDPAVLRPGRMDVHIYMSYC- 383 (455)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~---~~~~~------~~~iiI~tTN~~~-~LD~aLlrpgR~d~~I~~~~p- 383 (455)
..++.|+..++.- ....| ..+++|+|||..+ .++++|++ ||+.++++++|
T Consensus 159 -----------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~ 219 (350)
T 1g8p_A 159 -----------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPR 219 (350)
T ss_dssp -----------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCC
T ss_pred -----------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCC
Confidence 2234566655531 11111 2578889999754 89999999 99999999999
Q ss_pred CHHHHHHHHHHH
Q 012846 384 TPCGFDTLAANY 395 (455)
Q Consensus 384 ~~~~r~~l~~~~ 395 (455)
+.+.+..|++..
T Consensus 220 ~~~~~~~il~~~ 231 (350)
T 1g8p_A 220 DVETRVEVIRRR 231 (350)
T ss_dssp SHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 577777888764
No 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=8.8e-14 Score=139.73 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=113.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc------CCceEEeecc
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL------NFDIYDLELS 279 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l------~~~~~~l~~~ 279 (455)
+...+++++|.++..+.+.+.+...+.. ..+..++|+||||||||++++++++.+ +.+++.+++.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 3345688999998888887665432211 235689999999999999999999988 8888888865
Q ss_pred ccCC----------------------hHHHH----HHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 280 AVHS----------------------NSELR----RVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 280 ~~~~----------------------~~~L~----~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
...+ ...+. ..+.....+.||+|||+|.+... .....
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~-----------------~~~~~ 148 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKK-----------------YNDDI 148 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHS-----------------SCSTH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhcc-----------------CcCHH
Confidence 4321 12222 22222335899999999988641 11344
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCC---CCCCccccCCCcee-eEEEeCCCCHHHHHHHHHHHcC
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHK---DRLDPAVLRPGRMD-VHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~---~~LD~aLlrpgR~d-~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
+..|+..++.. .+..+.+|++||.+ +.+++.+.+ |+. ..|+++.++.++...+++..+.
T Consensus 149 l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 149 LYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp HHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 67777777654 22457888899877 567888887 664 5899999999999999998653
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=6e-14 Score=140.28 Aligned_cols=156 Identities=20% Similarity=0.280 Sum_probs=113.0
Q ss_pred ecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC-----ceEEee
Q 012846 203 TFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF-----DIYDLE 277 (455)
Q Consensus 203 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~-----~~~~l~ 277 (455)
....|.+|++++|.+.+++.|...+. . |. .+ .+||+||||||||++++++|+.+.. .+..++
T Consensus 17 ~k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 17 EKYRPETLDEVYGQNEVITTVRKFVD----E-------GK-LP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHH----T-------TC-CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHh----c-------CC-Cc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 45788999999999888777665543 1 21 12 3999999999999999999998742 366677
Q ss_pred ccccCChHHHHHHHHhc--------CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCC
Q 012846 278 LSAVHSNSELRRVLLST--------GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCG 349 (455)
Q Consensus 278 ~~~~~~~~~L~~ll~~~--------~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~ 349 (455)
.++......+++.+... ..+.|++|||+|.+.. ...+.|+..++...
T Consensus 84 ~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------------~~~~~L~~~le~~~---- 138 (340)
T 1sxj_C 84 ASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------------------AAQNALRRVIERYT---- 138 (340)
T ss_dssp TTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------------------HHHHHHHHHHHHTT----
T ss_pred CcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---------------------HHHHHHHHHHhcCC----
Confidence 66544444555443221 1368999999997742 12355777776542
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCC
Q 012846 350 DERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGIT 399 (455)
Q Consensus 350 ~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~ 399 (455)
....+|++||.+..+.+++.+ |+. .+.++.++.++....+...+...
T Consensus 139 ~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~ 185 (340)
T 1sxj_C 139 KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHE 185 (340)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999998 875 78999999998888888776443
No 69
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.52 E-value=8.1e-14 Score=145.61 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=106.7
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCce
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDI 273 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~ 273 (455)
...|..|+.|+|.++..+.+++.+.. ..+.++||+||||||||++|+++|+.+ +.++
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 239 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 34567899999999988888776531 235689999999999999999999997 7889
Q ss_pred EEeeccccC---ChHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCC
Q 012846 274 YDLELSAVH---SNSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSC 348 (455)
Q Consensus 274 ~~l~~~~~~---~~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~ 348 (455)
+.++++... ....++.+|.... .++||||| .. . . ..+.|+..|+.
T Consensus 240 ~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~---~--------------~---a~~~L~~~L~~----- 289 (468)
T 3pxg_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---I--------------D---ASNILKPSLAR----- 289 (468)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------CCCTTS-----
T ss_pred EEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc---h--------------h---HHHHHHHhhcC-----
Confidence 988887211 1245666665543 68999999 10 0 1 11334444431
Q ss_pred CCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 349 GDERIIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 349 ~~~~iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
+.+.+|++||.++ .+|++|.| ||.. |.++.|+.+++..|++.++..
T Consensus 290 -g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 290 -GELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp -SSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred -CCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 3588999999887 69999999 9984 999999999999999988765
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=4e-14 Score=158.30 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=105.6
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceE
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIY 274 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~ 274 (455)
..|.+|+.++|.++..+.+++.+. . ..++++||+||||||||++++++|+.+ +.+++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~----~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILL----R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHH----C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHh----c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 356789999999988877776552 1 235689999999999999999999987 88999
Q ss_pred EeeccccCC--------hHHHHHHHHhc---CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhc
Q 012846 275 DLELSAVHS--------NSELRRVLLST---GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG 343 (455)
Q Consensus 275 ~l~~~~~~~--------~~~L~~ll~~~---~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg 343 (455)
.++++.+.. ...+..++... ..++||||||+|.+.+.....+ .....+.|...++.
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-------------~~~~~~~L~~~l~~ 297 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-------------AVDAGNMLKPALAR 297 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------------HHHHHT
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-------------hHHHHHHHHHHHhC
Confidence 999887742 23466666554 3678999999999875322210 01112223333332
Q ss_pred cccCCCCceEEEEecCCCC----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcC
Q 012846 344 LWSSCGDERIIVFTTNHKD----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 344 ~~~~~~~~~iiI~tTN~~~----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
.++.+|++||.++ .+|++|.| ||+. |.++.|+.+++..|++.++.
T Consensus 298 ------~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 298 ------GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp ------TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred ------CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 3467888888764 58999999 9986 99999999999999986554
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=2.9e-13 Score=136.55 Aligned_cols=160 Identities=15% Similarity=0.057 Sum_probs=113.9
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----CCceEEeeccccCC
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----NFDIYDLELSAVHS 283 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----~~~~~~l~~~~~~~ 283 (455)
..+++++|.++..+.|.+.+....... .+..+.++|+||||||||++++++++.+ +..++.+++....+
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 345889999999999988887654431 1112379999999999999999999998 67788888766543
Q ss_pred hHH--------------------------HHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhH
Q 012846 284 NSE--------------------------LRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGL 337 (455)
Q Consensus 284 ~~~--------------------------L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 337 (455)
... +...+.....+.||+|||+|.+. ...+..|
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------------~~~~~~L 145 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------------PDILSTF 145 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------------HHHHHHH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------------hHHHHHH
Confidence 211 12222233468899999999762 1234556
Q ss_pred hhhhhccccCCCCceEEEEecCCC---CCCCccccCCCceee-EEEeCCCCHHHHHHHHHHHcC
Q 012846 338 LNFLDGLWSSCGDERIIVFTTNHK---DRLDPAVLRPGRMDV-HIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 338 L~~lDg~~~~~~~~~iiI~tTN~~---~~LD~aLlrpgR~d~-~I~~~~p~~~~r~~l~~~~l~ 397 (455)
+..++........++.+|++||.+ +.+++.+.+ |+.. .++++.++.++...+++..+.
T Consensus 146 ~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 146 IRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp HHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 666654321000257888899988 778888887 8865 899999999999999988764
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.50 E-value=1.2e-13 Score=152.56 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=111.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceE
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIY 274 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~ 274 (455)
..|..|+.++|.++..+.+++.+. ...+.++||+||||||||++|+++|+.+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 346689999999988888776542 1246789999999999999999999987 66788
Q ss_pred EeeccccCC--------hHHHHHHHHhcC--CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhcc
Q 012846 275 DLELSAVHS--------NSELRRVLLSTG--NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL 344 (455)
Q Consensus 275 ~l~~~~~~~--------~~~L~~ll~~~~--~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~ 344 (455)
.++++.+.. +..++.++.... .++||||||+|.+.+..... . .... ..+.+..+
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~----------~~~~----~~~~L~~~ 310 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--G----------GQVD----AANLIKPL 310 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--S----------CHHH----HHHHHSSC
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--c----------chHH----HHHHHHHH
Confidence 887766532 356777776664 47999999999987522110 0 1111 12222222
Q ss_pred ccCCCCceEEEEecCCC-----CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 345 WSSCGDERIIVFTTNHK-----DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 345 ~~~~~~~~iiI~tTN~~-----~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
... +++.+|++||.+ -.+|++|.| ||+ .|.++.|+.+++..+++.+.
T Consensus 311 l~~--~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 311 LSS--GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp SSS--CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHH
T ss_pred HhC--CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHH
Confidence 222 357788888864 357899999 998 69999999999999888654
No 73
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.47 E-value=7e-14 Score=122.69 Aligned_cols=132 Identities=11% Similarity=0.082 Sum_probs=90.6
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHHHH
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSELR 288 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~L~ 288 (455)
+++|.....+.+.+.+..... ....+||+||||||||++|+++++.. +.+++ ++|+.+.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 467888888888887765532 24579999999999999999999987 77899 9999887665555
Q ss_pred HHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCC-------
Q 012846 289 RVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHK------- 361 (455)
Q Consensus 289 ~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~------- 361 (455)
..+..+ .+++|||||||.+.. .....|+..|.... ..+.+|+|||.+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~~---------------------~~q~~Ll~~l~~~~----~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLTR---------------------EQQYHLVQLQSQEH----RPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSCH---------------------HHHHHHHHHHHSSS----CSSCEEEEESSCHHHHHHH
T ss_pred cHHHHc-CCcEEEEcChHHCCH---------------------HHHHHHHHHHhhcC----CCEEEEEECCcCHHHHHHc
Confidence 655544 568999999998743 12345666664332 235677888864
Q ss_pred CCCCccccCCCce-eeEEEeCCC
Q 012846 362 DRLDPAVLRPGRM-DVHIYMSYC 383 (455)
Q Consensus 362 ~~LD~aLlrpgR~-d~~I~~~~p 383 (455)
..+++.|.. |+ ...|++|..
T Consensus 124 ~~~~~~L~~--rl~~~~i~lPpL 144 (145)
T 3n70_A 124 NHIIAELYY--CFAMTQIACLPL 144 (145)
T ss_dssp SCCCHHHHH--HHHHHEEECCCC
T ss_pred CCCCHHHHH--HhcCCEEeCCCC
Confidence 234555544 44 235666653
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.47 E-value=6.2e-13 Score=146.80 Aligned_cols=147 Identities=18% Similarity=0.202 Sum_probs=107.1
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----------CCceE
Q 012846 205 NHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----------NFDIY 274 (455)
Q Consensus 205 ~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----------~~~~~ 274 (455)
..+..|+.++|.++.++.+.+.+.. ..+.++||+||||||||++|+++|+.+ +.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 4567899999999998888776531 335689999999999999999999997 88888
Q ss_pred EeeccccC---ChHHHHHHHHhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCC
Q 012846 275 DLELSAVH---SNSELRRVLLST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCG 349 (455)
Q Consensus 275 ~l~~~~~~---~~~~L~~ll~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~ 349 (455)
.+++..-. .+..++.+|... ..++||||| .. . . ..+.|+..|+ .
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~---~--------------~---~~~~L~~~l~------~ 289 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---I--------------D---ASNILKPSLA------R 289 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------CCCTT------S
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc---h--------------h---HHHHHHHHHh------c
Confidence 88872211 234667777654 368999999 10 0 1 1133444443 1
Q ss_pred CceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCC
Q 012846 350 DERIIVFTTNHKD-----RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 350 ~~~iiI~tTN~~~-----~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
+++.+|++||..+ .+|++|.| ||. .|.++.|+.+++..|++.++..
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 3588999999888 79999999 995 5999999999999999987765
No 75
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.46 E-value=2.3e-12 Score=128.61 Aligned_cols=148 Identities=19% Similarity=0.184 Sum_probs=106.5
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcC------------------------CceEEeecc---ccCChHHHHHHHHhcC-
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLN------------------------FDIYDLELS---AVHSNSELRRVLLSTG- 295 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~------------------------~~~~~l~~~---~~~~~~~L~~ll~~~~- 295 (455)
.+.+||||||||||||++|+++|+.+. .+++.++.. ....-+.++.++....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999999874 245666653 2224456777766542
Q ss_pred -----CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccC
Q 012846 296 -----NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLR 370 (455)
Q Consensus 296 -----~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlr 370 (455)
.+.|++|||+|.+.. ...+.||..|+.. +...++|++||+++.++|++.+
T Consensus 103 ~~~~~~~kvviIdead~l~~---------------------~a~naLLk~lEep----~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTD---------------------AAANALLKTLEEP----PAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCH---------------------HHHHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHT
T ss_pred ccccCCcEEEEECchhhcCH---------------------HHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHhh
Confidence 468999999998742 2246788888753 3468889999999999999998
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcCCCCHHHHHH
Q 012846 371 PGRMDVHIYMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNVRVTPADVGE 423 (455)
Q Consensus 371 pgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~ 423 (455)
|+ ..+.|+.|+.++...+++...... .+.+..++..++.++..+..
T Consensus 158 --Rc-~~~~~~~~~~~~~~~~L~~~~~~~----~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 158 --RC-RLHYLAPPPEQYAVTWLSREVTMS----QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp --TS-EEEECCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHTTTCHHHHHH
T ss_pred --cc-eeeeCCCCCHHHHHHHHHHhcCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 87 479999999999999888776221 23334444444455544433
No 76
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.42 E-value=6.2e-14 Score=122.81 Aligned_cols=132 Identities=9% Similarity=0.019 Sum_probs=87.4
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHH
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVL 291 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll 291 (455)
+++|.+...+.+.+.+..+... +.++||+||||||||++|+++++..+ +++.++++.+... ....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR-----------TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC-----------SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHH
Confidence 4678888888888888765422 46799999999999999999999888 9999998876422 133344
Q ss_pred HhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCC-CCC----Cc
Q 012846 292 LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHK-DRL----DP 366 (455)
Q Consensus 292 ~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~-~~L----D~ 366 (455)
. ...+++|||||||.+.. .. ...|+..++... ...+.+|+|||.+ +.+ ++
T Consensus 72 ~-~a~~~~l~lDei~~l~~------------------~~---q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 72 Q-KAEGGVLYVGDIAQYSR------------------NI---QTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp H-HTTTSEEEEEECTTCCH------------------HH---HHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHH
T ss_pred H-hCCCCeEEEeChHHCCH------------------HH---HHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccH
Confidence 3 44578999999998753 11 244555555431 1346677888754 432 33
Q ss_pred cccCCCce-eeEEEeCCC
Q 012846 367 AVLRPGRM-DVHIYMSYC 383 (455)
Q Consensus 367 aLlrpgR~-d~~I~~~~p 383 (455)
.|.. |+ ...|++|..
T Consensus 127 ~L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 127 KLAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHHH--HSSSEEEEECCC
T ss_pred HHHH--HhcCcEEeCCCC
Confidence 3443 54 456777764
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.41 E-value=4.3e-13 Score=149.95 Aligned_cols=160 Identities=18% Similarity=0.290 Sum_probs=113.0
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChH-
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNS- 285 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~- 285 (455)
++.|+|.+..++.+...+......- ...+. +...+||+||||||||++|++||+.+ +.+++.++|+.+....
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~---~~~~~-p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGL---KDPNR-PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGC---SCSSS-CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhccc---CCCCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 3567899888888887775442110 00001 12379999999999999999999998 7899999998775321
Q ss_pred ------------------HHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc--
Q 012846 286 ------------------ELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-- 345 (455)
Q Consensus 286 ------------------~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-- 345 (455)
.+...+.. ..++||||||||.+.. ..++.|+..||.-.
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~~---------------------~~~~~Ll~~l~~~~~~ 690 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAHP---------------------DVFNILLQILDDGRLT 690 (854)
T ss_dssp GGGC--------------CHHHHHHH-CSSEEEEESSGGGSCH---------------------HHHHHHHHHHTTTEEC
T ss_pred HHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEecccccCH---------------------HHHHHHHHHhccCceE
Confidence 12222222 3468999999997632 34677888887421
Q ss_pred cCCC-----CceEEEEecCCC--------------------------CCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 012846 346 SSCG-----DERIIVFTTNHK--------------------------DRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAAN 394 (455)
Q Consensus 346 ~~~~-----~~~iiI~tTN~~--------------------------~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~ 394 (455)
...+ .+.+||+|||.. ..+.|+|+. |+|..+.+++|+.+++..|++.
T Consensus 691 ~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~ 768 (854)
T 1qvr_A 691 DSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEI 768 (854)
T ss_dssp CSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHH
T ss_pred CCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHH
Confidence 1111 357899999972 346777777 9999999999999999999998
Q ss_pred HcC
Q 012846 395 YLG 397 (455)
Q Consensus 395 ~l~ 397 (455)
++.
T Consensus 769 ~l~ 771 (854)
T 1qvr_A 769 QLS 771 (854)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.37 E-value=1.3e-12 Score=128.85 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=102.0
Q ss_pred ccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHHH
Q 012846 211 DTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSEL 287 (455)
Q Consensus 211 ~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~L 287 (455)
++++|.....+.+.+.+.... ..+.++||+||||||||++|+++++.. +.+++.++|+.+.. ..+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~ 69 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLL 69 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHH
T ss_pred CCcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHH
Confidence 357888888888888776542 225689999999999999999999976 67899999988743 222
Q ss_pred HHHHHh------------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccc-cC-
Q 012846 288 RRVLLS------------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLW-SS- 347 (455)
Q Consensus 288 ~~ll~~------------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~-~~- 347 (455)
...++. ...+++|||||||.+.. .....|+..++... ..
T Consensus 70 ~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~---------------------~~q~~Ll~~l~~~~~~~~ 128 (304)
T 1ojl_A 70 ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP---------------------LMQVRLLRAIQEREVQRV 128 (304)
T ss_dssp HHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH---------------------HHHHHHHHHHHSSBCCBT
T ss_pred HHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH---------------------HHHHHHHHHHhcCEeeec
Confidence 222211 12457999999998753 12345666665421 00
Q ss_pred -----CCCceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCC--HHHHHHHHHHHcC
Q 012846 348 -----CGDERIIVFTTNHK-------DRLDPAVLRPGRM-DVHIYMSYCT--PCGFDTLAANYLG 397 (455)
Q Consensus 348 -----~~~~~iiI~tTN~~-------~~LD~aLlrpgR~-d~~I~~~~p~--~~~r~~l~~~~l~ 397 (455)
....+.||+|||.+ ..+++.|.. |+ ...|++|... .++...|++.|+.
T Consensus 129 g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 129 GSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp TBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred CCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 01246788899875 245667776 77 4557788777 4667777776653
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.35 E-value=1.2e-11 Score=129.65 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=93.9
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC--ceEEeeccccCChHHH--
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF--DIYDLELSAVHSNSEL-- 287 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~--~~~~l~~~~~~~~~~L-- 287 (455)
.++|.+++++.+...+. . +.++||+||||||||++|+++|+.++. ++..+.+.. .+.+++
T Consensus 23 ~ivGq~~~i~~l~~al~----~-----------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL----S-----------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH----H-----------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh----c-----------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 46788877766654432 1 358999999999999999999998854 444444432 111111
Q ss_pred ---------HHHHHhcC-----CceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhc-------ccc
Q 012846 288 ---------RRVLLSTG-----NRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG-------LWS 346 (455)
Q Consensus 288 ---------~~ll~~~~-----~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg-------~~~ 346 (455)
...+.... .++|||||||+.+.+ .+.+.|+..|+. ...
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~---------------------~~q~~LL~~lee~~v~i~G~~~ 145 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGP---------------------AILNTLLTAINERQFRNGAHVE 145 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCCH---------------------HHHHHHHHHHHSSEEECSSSEE
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcH---------------------HHHHHHHHHHHHHhccCCCCcC
Confidence 11121111 356999999986432 345667777752 111
Q ss_pred CCCCceEEEEecCCCCC---CCccccCCCceeeEEEeCCCCH-HHHHHHHHHHcC
Q 012846 347 SCGDERIIVFTTNHKDR---LDPAVLRPGRMDVHIYMSYCTP-CGFDTLAANYLG 397 (455)
Q Consensus 347 ~~~~~~iiI~tTN~~~~---LD~aLlrpgR~d~~I~~~~p~~-~~r~~l~~~~l~ 397 (455)
.. ...++|+|||.+.. +.+++++ ||..+|.+|+|+. +++..|++....
T Consensus 146 ~~-~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 146 KI-PMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp EC-CCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred Cc-chhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 11 23467888886322 4459999 9999999999998 778888886553
No 80
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=7.5e-12 Score=123.49 Aligned_cols=123 Identities=16% Similarity=0.231 Sum_probs=96.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc------CCceEEeeccc-cCChHHHHHHHHhcC------CceEEEEecccccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL------NFDIYDLELSA-VHSNSELRRVLLSTG------NRSILVVEDIDCSLEL 311 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l------~~~~~~l~~~~-~~~~~~L~~ll~~~~------~~sIlliDeiD~l~~~ 311 (455)
...||||||||||||++++++|+.+ ..+++.++.+. -..-+.+++++..+. ...|++|||+|.+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~- 96 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ- 96 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-
Confidence 3589999999999999999999863 45788888764 334556777766543 357999999998742
Q ss_pred ccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHH
Q 012846 312 EDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTL 391 (455)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l 391 (455)
...+.||..|+.. ++..++|++||++..|.|++.+ | .++|+.|+.++....
T Consensus 97 --------------------~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 97 --------------------QAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDL 147 (305)
T ss_dssp --------------------HHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHH
T ss_pred --------------------HHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHH
Confidence 2246788888753 3457888888999999999999 7 889999999998888
Q ss_pred HHHHcC
Q 012846 392 AANYLG 397 (455)
Q Consensus 392 ~~~~l~ 397 (455)
++..++
T Consensus 148 L~~~~~ 153 (305)
T 2gno_A 148 VKEKIG 153 (305)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 887763
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=3.6e-13 Score=144.55 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=86.6
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeec----cccCC---hHHH------HHHHHhcCCceEEEEecccccccccc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL----SAVHS---NSEL------RRVLLSTGNRSILVVEDIDCSLELED 313 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~----~~~~~---~~~L------~~ll~~~~~~sIlliDeiD~l~~~~~ 313 (455)
++||+||||||||+||+++|+.++...+.... ..+.. .... ..-....+.++||||||||.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~--- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD--- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS---
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCH---
Confidence 79999999999999999999999877665321 22110 0000 00001112568999999998743
Q ss_pred ccCCCccccccCCCccchhhHhhHhhhhhcc---------ccCCCCceEEEEecCCCC-------------CCCccccCC
Q 012846 314 RQAQPTTVNVLKPLRPMQVTLSGLLNFLDGL---------WSSCGDERIIVFTTNHKD-------------RLDPAVLRP 371 (455)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~---------~~~~~~~~iiI~tTN~~~-------------~LD~aLlrp 371 (455)
...+.|+..|+.- .........||+|||.+. .|+++|++
T Consensus 406 ------------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~- 466 (595)
T 3f9v_A 406 ------------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS- 466 (595)
T ss_dssp ------------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG-
T ss_pred ------------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh-
Confidence 2245666666531 111123578999999886 89999999
Q ss_pred Cceee-EEEeCCCCHHHHHHHHHHHcCC
Q 012846 372 GRMDV-HIYMSYCTPCGFDTLAANYLGI 398 (455)
Q Consensus 372 gR~d~-~I~~~~p~~~~r~~l~~~~l~~ 398 (455)
|||. .+..++|+.+ ...|+++.+..
T Consensus 467 -RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 467 -RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp -GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred -hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9984 5666788878 88888887764
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.27 E-value=4.7e-12 Score=114.57 Aligned_cols=95 Identities=21% Similarity=0.325 Sum_probs=65.3
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc----CCceEEeecccc
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL----NFDIYDLELSAV 281 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l----~~~~~~l~~~~~ 281 (455)
.+.+|+++++.....+.+.+.+..+... ...+.+.+++|+||||||||+|++++++.+ +..++.++..++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4578999988655555566666655543 233446789999999999999999999877 566666665544
Q ss_pred CChHHHH---------HHHHhcCCceEEEEeccccc
Q 012846 282 HSNSELR---------RVLLSTGNRSILVVEDIDCS 308 (455)
Q Consensus 282 ~~~~~L~---------~ll~~~~~~sIlliDeiD~l 308 (455)
.. .+. .++....++.+|+|||++..
T Consensus 79 ~~--~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 79 IF--RLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HH--HHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HH--HHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 21 111 23333457899999999854
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.27 E-value=2.8e-11 Score=146.92 Aligned_cols=137 Identities=21% Similarity=0.385 Sum_probs=97.9
Q ss_pred CceeEEeCCCCCChHHHH-HHHHHHcCCceEEeeccccCChHHHHHHHHhc-----------------CCceEEEEeccc
Q 012846 245 KRGYLLYGPPGTGKSSLI-AAMSNYLNFDIYDLELSAVHSNSELRRVLLST-----------------GNRSILVVEDID 306 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la-~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~-----------------~~~sIlliDeiD 306 (455)
++++||+||||||||++| +++++..++.++.++++...+...+.+.+... .+++||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 579999999999999999 55666668889999999888777777777542 134799999999
Q ss_pred cccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCC------CceEEEEecCCCC-----CCCccccCCCcee
Q 012846 307 CSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCG------DERIIVFTTNHKD-----RLDPAVLRPGRMD 375 (455)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~------~~~iiI~tTN~~~-----~LD~aLlrpgR~d 375 (455)
.... ++- +.+ .....+.+++. ..|++.... .++.+|+|||+|. .|+|+|+| ||
T Consensus 1347 mp~~--d~y--g~q--------~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1347 LPKL--DKY--GSQ--------NVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp CSCC--CSS--SCC--------HHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred cccc--ccc--Cch--------hHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 5321 111 000 12223333331 224443211 2478999999995 89999999 99
Q ss_pred eEEEeCCCCHHHHHHHHHHHcC
Q 012846 376 VHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 376 ~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
..|.++.|+.+++..|+..++.
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHH
Confidence 7899999999999999988763
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.25 E-value=6e-11 Score=120.55 Aligned_cols=164 Identities=10% Similarity=0.087 Sum_probs=106.4
Q ss_pred CcccccccHHHHHHHHHHH-HHHHhchhHHhhhCCCCCceeEE--eCCCCCChHHHHHHHHHHc---------CCceEEe
Q 012846 209 TFDTLAMEAELKKMIIEDL-ERFVKRKDYYRRVGKAWKRGYLL--YGPPGTGKSSLIAAMSNYL---------NFDIYDL 276 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l-~~~~~~~~~y~~~g~~~~rgiLL--~GppGTGKT~la~aiA~~l---------~~~~~~l 276 (455)
..+.++|.++..+.|.+.+ ....... ...+..++| +||||+|||+|++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3478999998888888776 5443220 012457899 9999999999999999876 4567777
Q ss_pred eccccCCh----------------------HH----HHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCccc
Q 012846 277 ELSAVHSN----------------------SE----LRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPM 330 (455)
Q Consensus 277 ~~~~~~~~----------------------~~----L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~ 330 (455)
++....+. .. +...+.....+.||+|||+|.+..... ..
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~---------------~~ 157 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR---------------IA 157 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT---------------SC
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC---------------cc
Confidence 76432211 11 222233334688999999998753100 12
Q ss_pred hhhHhhHhhhhhccccCCC--CceEEEEecCCCC---CCC---ccccCCCceeeEEEeCCCCHHHHHHHHHHHcC
Q 012846 331 QVTLSGLLNFLDGLWSSCG--DERIIVFTTNHKD---RLD---PAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 331 ~~~ls~LL~~lDg~~~~~~--~~~iiI~tTN~~~---~LD---~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
...+..|+..++.... .+ ..+.+|+|||.++ .++ +.+.+ |+...+.++.++.++..++++..+.
T Consensus 158 ~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 158 AEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp HHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 2345555555554321 12 4578888888665 344 56666 5555599999999999999976653
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.14 E-value=4.4e-11 Score=109.99 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=63.7
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCC-CCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecccc
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAV 281 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~-~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~ 281 (455)
.+.+|+++++.+...+.+.+.+..++... ... .+++++|+||||||||+|++++++.+ +.+++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 35689999886655555556665555431 111 12789999999999999999999987 677777776553
Q ss_pred CC-------hHHHHHHHHhcCCceEEEEeccccc
Q 012846 282 HS-------NSELRRVLLSTGNRSILVVEDIDCS 308 (455)
Q Consensus 282 ~~-------~~~L~~ll~~~~~~sIlliDeiD~l 308 (455)
.. ...+..++.......+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 21 0111222333334569999999764
No 86
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.09 E-value=9.1e-11 Score=118.84 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=86.9
Q ss_pred hCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCc
Q 012846 240 VGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPT 319 (455)
Q Consensus 240 ~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~ 319 (455)
++.+.++.++|+||||+|||++++++++.++..++.++... ......+....+..++++||++.......+ ....
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~-l~~~ 238 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGESRD-LPSG 238 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTTTTT-CCCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHHHhh-cccc
Confidence 47788889999999999999999999999887766543322 122223444557788999999987642111 0000
Q ss_pred cccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 012846 320 TVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSY 382 (455)
Q Consensus 320 ~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~ 382 (455)
....++..+.+.+||. +.|+++||+++.+ +++++|||++..+...+
T Consensus 239 ---------~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 239 ---------QGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp ---------SHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred ---------CcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 1112456778888874 4578899999999 89999999999888766
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.01 E-value=1.9e-10 Score=113.49 Aligned_cols=96 Identities=24% Similarity=0.377 Sum_probs=60.9
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC----CceEEeeccccC
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN----FDIYDLELSAVH 282 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~----~~~~~l~~~~~~ 282 (455)
+.+|+++.+....++.+.+.+..|+... +...+.+++|+||||||||+|+.++|+.+. .++..+++.++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4689999876544445555555555431 111357999999999999999999998665 677777655431
Q ss_pred -------ChHHHHHHHHhcCCceEEEEeccccc
Q 012846 283 -------SNSELRRVLLSTGNRSILVVEDIDCS 308 (455)
Q Consensus 283 -------~~~~L~~ll~~~~~~sIlliDeiD~l 308 (455)
....+...+.......+|+|||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 11111122222335679999999754
No 88
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.99 E-value=4.8e-10 Score=131.13 Aligned_cols=147 Identities=12% Similarity=0.138 Sum_probs=91.8
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhc----------hhHHhh------hC------------CCCCceeEEeCCCCCChH
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKR----------KDYYRR------VG------------KAWKRGYLLYGPPGTGKS 259 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~----------~~~y~~------~g------------~~~~rgiLL~GppGTGKT 259 (455)
.+|+++.|.++.|+.+++.+..++.. ++.++. .| .|.++.+|+|||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 57999999999999999999988844 445554 12 344455999999999999
Q ss_pred HHHHHHHHHc---CCceEEeeccccC----------------------ChHHHHHHHHh--cCCceEEEEeccccccccc
Q 012846 260 SLIAAMSNYL---NFDIYDLELSAVH----------------------SNSELRRVLLS--TGNRSILVVEDIDCSLELE 312 (455)
Q Consensus 260 ~la~aiA~~l---~~~~~~l~~~~~~----------------------~~~~L~~ll~~--~~~~sIlliDeiD~l~~~~ 312 (455)
+||.+++.+. +-+...++..... ++..++.++.. ...+|+|++|++|++.+.+
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999999866 3444444333311 23455555432 3479999999999998854
Q ss_pred cccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCC
Q 012846 313 DRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 361 (455)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~ 361 (455)
...+..+..+. .-..+.++++|..||++.... +++|| +||+.
T Consensus 1177 ~~~g~~~~~~~----~~~~r~~~q~l~~~~~~~~~~--~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGEIGDSHM----GLAARMMSQAMRKLAGNLKQS--NTLLI-FINQI 1218 (1706)
T ss_dssp HHHSCTTCCCT----THHHHHHHHHHHHHHHHHHHT--TCEEE-EEECE
T ss_pred ccccccccccc----cHHHHHHHHHHHHHHhhhccC--CeEEE-Eeccc
Confidence 32211111000 023446899999999976542 35555 77865
No 89
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.96 E-value=9.7e-10 Score=101.43 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=67.8
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcCCceEEEEeccccccccccccCCCcc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTT 320 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~ 320 (455)
|.|.++++|+|||||||||++|.++|+.+...++.+..+. +. -.+.......||+|||+|.-.-
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~----f~l~~l~~~kIiiLDEad~~~~---------- 117 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH----FWLEPLTDTKVAMLDDATTTCW---------- 117 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC----GGGGGGTTCSSEEEEEECHHHH----------
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch----hhhcccCCCCEEEEECCCchhH----------
Confidence 4677788999999999999999999999976554332111 10 0122233456999999984210
Q ss_pred ccccCCCccchhhHhhHhhhhhccc----cCCC-----CceEEEEecCCCCCCC---ccccCCCceeeEEEeCCCC
Q 012846 321 VNVLKPLRPMQVTLSGLLNFLDGLW----SSCG-----DERIIVFTTNHKDRLD---PAVLRPGRMDVHIYMSYCT 384 (455)
Q Consensus 321 ~~~~~~~~~~~~~ls~LL~~lDg~~----~~~~-----~~~iiI~tTN~~~~LD---~aLlrpgR~d~~I~~~~p~ 384 (455)
...-..+-+.+||.. .... ....+|.|||..-.-+ +.|.. |+ ..+.++.|-
T Consensus 118 ----------~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~F~~~~ 180 (212)
T 1tue_A 118 ----------TYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI-TVFEFPNAF 180 (212)
T ss_dssp ----------HHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC-EEEECCSCC
T ss_pred ----------HHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE-EEEEcCCCC
Confidence 111133456667741 0000 1235788999742222 34656 77 467776543
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.91 E-value=2.4e-08 Score=98.70 Aligned_cols=175 Identities=15% Similarity=0.085 Sum_probs=103.8
Q ss_pred CcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc-----CC
Q 012846 209 TFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV-----HS 283 (455)
Q Consensus 209 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~-----~~ 283 (455)
.-+.++|.++..+.|.+ +. . +.++++||+|+|||+|++.+++.++.+.+.+++... .+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 45678888777666654 42 1 479999999999999999999998877777776542 11
Q ss_pred h--------------------------------------------------HHHHHHHHhcC-CceEEEEeccccccccc
Q 012846 284 N--------------------------------------------------SELRRVLLSTG-NRSILVVEDIDCSLELE 312 (455)
Q Consensus 284 ~--------------------------------------------------~~L~~ll~~~~-~~sIlliDeiD~l~~~~ 312 (455)
. ..+.+.+.... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 0 11222223322 38899999999875310
Q ss_pred cccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCC---------CCCccccCCCceeeEEEeCCC
Q 012846 313 DRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKD---------RLDPAVLRPGRMDVHIYMSYC 383 (455)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~---------~LD~aLlrpgR~d~~I~~~~p 383 (455)
....+..|-..++.. .++.+|+|++... .....+ .||+...+.++..
T Consensus 154 -----------------~~~~~~~l~~~~~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l 209 (357)
T 2fna_A 154 -----------------GVNLLPALAYAYDNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPF 209 (357)
T ss_dssp -----------------TCCCHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCC
T ss_pred -----------------chhHHHHHHHHHHcC-----CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCC
Confidence 011112222222321 1355666655421 111222 2477778999999
Q ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHhhcCCCCHHHHHHHH
Q 012846 384 TPCGFDTLAANYLGITDHPLIYEIKEIMQNVRVTPADVGEQL 425 (455)
Q Consensus 384 ~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~~l 425 (455)
+.++..++++..++..+..... ...+....+..|.-+..++
T Consensus 210 ~~~e~~~~l~~~~~~~~~~~~~-~~~i~~~t~G~P~~l~~~~ 250 (357)
T 2fna_A 210 SREEAIEFLRRGFQEADIDFKD-YEVVYEKIGGIPGWLTYFG 250 (357)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCC-HHHHHHHHCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCc-HHHHHHHhCCCHHHHHHHH
Confidence 9999999998765321111111 1555566666777665543
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.85 E-value=4.4e-09 Score=92.56 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=46.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCChHHHHHHHHhcCCceEEEEecccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCSL 309 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l~ 309 (455)
+..++|+||+|+|||+|++++++.+ +..++.++..++... .-..++.+|+|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCccccC
Confidence 5679999999999999999999988 677888887776543 113468899999998753
No 92
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.84 E-value=3.6e-09 Score=97.76 Aligned_cols=122 Identities=13% Similarity=0.104 Sum_probs=77.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH--------cC-CceEEeeccccCC---------------------hHHHHHHHH-h
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY--------LN-FDIYDLELSAVHS---------------------NSELRRVLL-S 293 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~--------l~-~~~~~l~~~~~~~---------------------~~~L~~ll~-~ 293 (455)
...+|++|+||||||++|.+++.. .| .++|..++.++.. ...+...+. .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 346899999999999998887543 34 7777665543321 022222211 1
Q ss_pred cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCc
Q 012846 294 TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGR 373 (455)
Q Consensus 294 ~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR 373 (455)
..+++||+|||++.+.+.+.... +. ..++..+..- .....-||++|+.++.||.++.+ |
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~------------e~----~rll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~--r 143 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGS------------KI----PENVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRT--L 143 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTC------------CC----CHHHHGGGGT---TTTTCEEEEEESCGGGBCHHHHT--T
T ss_pred ccCceEEEEEChhhhccCccccc------------hh----HHHHHHHHhc---CcCCeEEEEECCCHHHHhHHHHH--H
Confidence 23589999999999875221100 11 1244444322 12346678888889999999888 9
Q ss_pred eeeEEEeCCCCHHH
Q 012846 374 MDVHIYMSYCTPCG 387 (455)
Q Consensus 374 ~d~~I~~~~p~~~~ 387 (455)
++.+++++.+....
T Consensus 144 i~~~~~l~~~~~~~ 157 (199)
T 2r2a_A 144 VRKHYHIASNKMGM 157 (199)
T ss_dssp EEEEEEEEECSSCC
T ss_pred hheEEEEcCcccCc
Confidence 99999998865443
No 93
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.84 E-value=1.4e-09 Score=116.92 Aligned_cols=53 Identities=32% Similarity=0.338 Sum_probs=42.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 204 FNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 204 ~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
...|..|++++|.+.+++.+...+. . +..++|+||||||||+++++||+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~----~-----------g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN----Q-----------KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH----T-----------TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhcccccc----C-----------CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3457789999999888766654432 1 358999999999999999999998854
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.83 E-value=1.9e-09 Score=106.18 Aligned_cols=115 Identities=12% Similarity=0.159 Sum_probs=66.2
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHcCCc--eEEeecccc----C-C-hHHHHHHHHhcC-CceEEEEecccccccc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD--IYDLELSAV----H-S-NSELRRVLLSTG-NRSILVVEDIDCSLEL 311 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~--~~~l~~~~~----~-~-~~~L~~ll~~~~-~~sIlliDeiD~l~~~ 311 (455)
|.+.++.++|+||||||||+|+.++|...+.+ ++.++..+. . . +..+..+..... .+ +|+||+++.+...
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVIGA 197 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC--
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEecccccccc
Confidence 44556678999999999999999999875554 445511111 1 1 122222222222 23 9999999988542
Q ss_pred ccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccc
Q 012846 312 EDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAV 368 (455)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aL 368 (455)
.......+ .....+.+++..|+++.... ++.+|++|| +...|+++
T Consensus 198 ~~~~s~~G---------~v~~~lrqlL~~L~~~~k~~--gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNTTSG---------GISRGAFDLLSDIGAMAASR--GCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHH--TCEEEEECC-CSSCSSSH
T ss_pred cccccccc---------hHHHHHHHHHHHHHHHHhhC--CCEEEEEeC-CcccchhH
Confidence 21110000 22345677777777664432 367788888 66677764
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.80 E-value=5.5e-07 Score=88.71 Aligned_cols=181 Identities=17% Similarity=0.074 Sum_probs=107.2
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccC----
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVH---- 282 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~---- 282 (455)
+..-+.++|.+...+.|.+.+.. | +.++++||+|+|||+|++.+++..+ .+.+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 33456788988887777665531 1 5799999999999999999999876 5555543221
Q ss_pred --Ch---------------------------------------HHHHHHHHhc---CCceEEEEeccccccccccccCCC
Q 012846 283 --SN---------------------------------------SELRRVLLST---GNRSILVVEDIDCSLELEDRQAQP 318 (455)
Q Consensus 283 --~~---------------------------------------~~L~~ll~~~---~~~sIlliDeiD~l~~~~~~~~~~ 318 (455)
+. ..+.+.+... ..+.+|+|||++.+......
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~---- 146 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR---- 146 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT----
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc----
Confidence 10 1122222221 13899999999987531000
Q ss_pred ccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCC---------CCCccccCCCceeeEEEeCCCCHHHHH
Q 012846 319 TTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKD---------RLDPAVLRPGRMDVHIYMSYCTPCGFD 389 (455)
Q Consensus 319 ~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~---------~LD~aLlrpgR~d~~I~~~~p~~~~r~ 389 (455)
.....+..|-..++.. ..+.+|+|+.... .....+. ||....++++..+.++..
T Consensus 147 ----------~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~ 209 (350)
T 2qen_A 147 ----------GGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSV 209 (350)
T ss_dssp ----------TTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHH
T ss_pred ----------chhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHH
Confidence 0112222222333332 2355566554321 1122232 476678999999999999
Q ss_pred HHHHHHcCCCCCCc-HHHHHHHhhcCCCCHHHHHHHH
Q 012846 390 TLAANYLGITDHPL-IYEIKEIMQNVRVTPADVGEQL 425 (455)
Q Consensus 390 ~l~~~~l~~~~~~l-~~~i~~l~~~~~~tpa~i~~~l 425 (455)
++++..+...+... .+.+..+....+..|.-+..++
T Consensus 210 ~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~~ 246 (350)
T 2qen_A 210 EFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFG 246 (350)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 99987664433322 3455666666677787665543
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.76 E-value=1.8e-08 Score=122.69 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=95.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcC-CceEEEEeccccccccccccCCCccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNV 323 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~-~~sIlliDeiD~l~~~~~~~~~~~~~~~ 323 (455)
..|.+++||+|||||++++++|+.+|.+++.++|++-.+...+.++|..+. .++.++|||++.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 468999999999999999999999999999999999888899999887765 589999999997643
Q ss_pred cCCCccchhhHhhHh----hhh---------hccccCCCCceEEEEecC----CCCCCCccccCCCceeeEEEeCCCCHH
Q 012846 324 LKPLRPMQVTLSGLL----NFL---------DGLWSSCGDERIIVFTTN----HKDRLDPAVLRPGRMDVHIYMSYCTPC 386 (455)
Q Consensus 324 ~~~~~~~~~~ls~LL----~~l---------Dg~~~~~~~~~iiI~tTN----~~~~LD~aLlrpgR~d~~I~~~~p~~~ 386 (455)
.....+++.+ +.+ +|-.-.......|++|.| ....|+++|.+ || +.|.|.+|+.+
T Consensus 712 -----evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 712 -----KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 1111222222 221 110001112345778888 34679999988 88 78999999998
Q ss_pred HHHHHHH
Q 012846 387 GFDTLAA 393 (455)
Q Consensus 387 ~r~~l~~ 393 (455)
...++.-
T Consensus 784 ~i~ei~l 790 (2695)
T 4akg_A 784 TIAEMIL 790 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777754
No 97
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.75 E-value=1e-07 Score=116.81 Aligned_cols=134 Identities=19% Similarity=0.403 Sum_probs=93.2
Q ss_pred CceeEEeCCCCCChHHHHHH-HHHHcCCceEEeeccccCChHHHHHHHHh------c------------CCceEEEEecc
Q 012846 245 KRGYLLYGPPGTGKSSLIAA-MSNYLNFDIYDLELSAVHSNSELRRVLLS------T------------GNRSILVVEDI 305 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~a-iA~~l~~~~~~l~~~~~~~~~~L~~ll~~------~------------~~~sIlliDei 305 (455)
++.+||+||||||||++++. +++..+.+++.++++...+...+...+.. . .++.|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 46899999999999987755 45455778889999988887788777753 0 12369999999
Q ss_pred ccccccccccCCCccccccCCCccchhhHhhHhhhhh--ccccCCC------CceEEEEecCCC-----CCCCccccCCC
Q 012846 306 DCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD--GLWSSCG------DERIIVFTTNHK-----DRLDPAVLRPG 372 (455)
Q Consensus 306 D~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD--g~~~~~~------~~~iiI~tTN~~-----~~LD~aLlrpg 372 (455)
+.-.. +. . ..+..+.-|...|| |++.... .++.+|+|+|.| ..|+++|+|
T Consensus 1384 Nmp~~--D~--y-----------GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r-- 1446 (3245)
T 3vkg_A 1384 NLPST--DK--Y-----------GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR-- 1446 (3245)
T ss_dssp TCCCC--CT--T-----------SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--
T ss_pred CCCCc--cc--c-----------ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--
Confidence 84211 11 1 12233344444444 2222211 246788999988 469999999
Q ss_pred ceeeEEEeCCCCHHHHHHHHHHHc
Q 012846 373 RMDVHIYMSYCTPCGFDTLAANYL 396 (455)
Q Consensus 373 R~d~~I~~~~p~~~~r~~l~~~~l 396 (455)
||. .+.+++|+.++...|+..++
T Consensus 1447 ~F~-vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1447 HAP-ILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp TCC-EEECCCCCHHHHHHHHHHHH
T ss_pred hce-EEEeCCCCHHHHHHHHHHHH
Confidence 995 59999999999999987654
No 98
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.69 E-value=2.9e-07 Score=92.87 Aligned_cols=152 Identities=18% Similarity=0.244 Sum_probs=97.0
Q ss_pred cccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCc--eEEeeccccCChHHHHH
Q 012846 212 TLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFD--IYDLELSAVHSNSELRR 289 (455)
Q Consensus 212 ~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~--~~~l~~~~~~~~~~L~~ 289 (455)
.++|......++.+.+..... ....+|++|++||||+.+|+++....+.. ++.++|+.+..+.--..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 466776666666665543322 23469999999999999999999877544 99999998854322233
Q ss_pred HH-----------------HhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhc-cccCCCC-
Q 012846 290 VL-----------------LSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG-LWSSCGD- 350 (455)
Q Consensus 290 ll-----------------~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg-~~~~~~~- 350 (455)
+| .....+++||||||+.+.. .....||..|+. .....|+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~---------------------~~Q~~Ll~~l~~~~~~~~g~~ 257 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQ---------------------RVQAKLLRVLETGSFTRLGGN 257 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCH---------------------HHHHHHHHHHHHSEECCBTCC
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCCH---------------------HHHHHHHHHHHhCCcccCCCC
Confidence 32 1223567999999998753 223556666642 1111111
Q ss_pred -----ceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHHcC
Q 012846 351 -----ERIIVFTTNHK-------DRLDPAVLRPGRMD-VHIYMSYCTP--CGFDTLAANYLG 397 (455)
Q Consensus 351 -----~~iiI~tTN~~-------~~LD~aLlrpgR~d-~~I~~~~p~~--~~r~~l~~~~l~ 397 (455)
.+-+|++||.. ..+.+.|.. |+. ..|++|+... ++...|+..|+.
T Consensus 258 ~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 258 QKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp CBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 24577777742 123334443 443 4688998877 788888888763
No 99
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.68 E-value=9.4e-08 Score=91.83 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=39.8
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcCCceEEEEeccccc
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTGNRSILVVEDIDCS 308 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~sIlliDeiD~l 308 (455)
+++.+++||||||||||+++.|||+.+..- -.++.+.. ...|.....+.|++.||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~~------~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTNE------NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTCS------SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeecccc------ccccccccccEEEEeccccch
Confidence 556789999999999999999999987552 22232211 112344456677887877643
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.61 E-value=4.4e-07 Score=92.17 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=97.5
Q ss_pred cccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC---CceEEeeccccCChHH
Q 012846 210 FDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN---FDIYDLELSAVHSNSE 286 (455)
Q Consensus 210 f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~---~~~~~l~~~~~~~~~~ 286 (455)
++.++|.....+++.+.+.... +....+|++|++||||+++|+++..... .+++.++|+.+.. ..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~-~~ 203 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR-DI 203 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH-HH
T ss_pred chhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH-HH
Confidence 3456666666667766665432 1235689999999999999999988764 6899999998743 33
Q ss_pred HHHHHHh------------------cCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhc-cccC
Q 012846 287 LRRVLLS------------------TGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDG-LWSS 347 (455)
Q Consensus 287 L~~ll~~------------------~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg-~~~~ 347 (455)
+...++. ...+++||||||+.+.. . ....||..|+. -...
T Consensus 204 ~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~------------------~---~q~~Ll~~l~~~~~~~ 262 (387)
T 1ny5_A 204 FEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL------------------E---AQAKLLRVIESGKFYR 262 (387)
T ss_dssp HHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH------------------H---HHHHHHHHHHHSEECC
T ss_pred HHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH------------------H---HHHHHHHHHhcCcEEe
Confidence 3333332 23467999999998753 2 23455555542 1111
Q ss_pred CC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHHcC
Q 012846 348 CG------DERIIVFTTNHK-------DRLDPAVLRPGRM-DVHIYMSYCTP--CGFDTLAANYLG 397 (455)
Q Consensus 348 ~~------~~~iiI~tTN~~-------~~LD~aLlrpgR~-d~~I~~~~p~~--~~r~~l~~~~l~ 397 (455)
.| -.+.||+|||.. ..+.+.|.- |+ ...|++|.... ++...|+..|+.
T Consensus 263 ~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 263 LGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp BTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 11 135688888863 233444443 44 35678887765 777888887763
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.40 E-value=4e-07 Score=93.74 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=81.2
Q ss_pred ccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHH-HHHcCCceEEeeccccCChHHHH---
Q 012846 213 LAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAM-SNYLNFDIYDLELSAVHSNSELR--- 288 (455)
Q Consensus 213 l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~ai-A~~l~~~~~~l~~~~~~~~~~L~--- 288 (455)
|.|.+.+|+.|.-.+. ..-.. ....-.+||.|+||| ||++++++ ++.+....|..... .+...|.
T Consensus 215 I~G~e~vK~aLll~L~---GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF---SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHT---TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHc---CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEE
Confidence 7788887776654331 11000 011225999999999 99999999 88776655542221 1111111
Q ss_pred ---------HHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhh-------ccccCCCCce
Q 012846 289 ---------RVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLD-------GLWSSCGDER 352 (455)
Q Consensus 289 ---------~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD-------g~~~~~~~~~ 352 (455)
.-....+...|+|+|||+.+.. .+++.|+..|+ |. .-....
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~---------------------~~qsaLlEaMEe~~VtI~G~--~lparf 340 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGAPE---------------------PHRWALMEAMDKGTVTVDGI--ALNARC 340 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTCCH---------------------HHHHHHHHHHHHSEEEETTE--EEECCC
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhCCH---------------------HHHHHHHHHHhCCcEEECCE--EcCCCe
Confidence 0001123578999999997643 33455665554 22 112347
Q ss_pred EEEEecCCCC-----------CCCccccCCCceeeEEE-eCCCCHH
Q 012846 353 IIVFTTNHKD-----------RLDPAVLRPGRMDVHIY-MSYCTPC 386 (455)
Q Consensus 353 iiI~tTN~~~-----------~LD~aLlrpgR~d~~I~-~~~p~~~ 386 (455)
.||+|+|..+ .|+++++. |||+.+. +++|+.+
T Consensus 341 ~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 341 AVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPG 384 (506)
T ss_dssp EEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-----
T ss_pred EEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChh
Confidence 8999999875 78899999 9988654 5666654
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.38 E-value=1.3e-06 Score=107.40 Aligned_cols=132 Identities=16% Similarity=0.121 Sum_probs=94.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHHHHHHhcC-CceEEEEeccccccccccccCCCccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTG-NRSILVVEDIDCSLELEDRQAQPTTVNV 323 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~-~~sIlliDeiD~l~~~~~~~~~~~~~~~ 323 (455)
..|..+.||+|||||.+++++|+.+|.+++.++|++-.+...+.++|..+. .++..+|||++.+-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~------------- 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE------------- 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH-------------
Confidence 457789999999999999999999999999999999888888888887765 588999999998643
Q ss_pred cCCCccchhhHhhHhh----hh---------h-ccccCCCCceEEEEecCC----CCCCCccccCCCceeeEEEeCCCCH
Q 012846 324 LKPLRPMQVTLSGLLN----FL---------D-GLWSSCGDERIIVFTTNH----KDRLDPAVLRPGRMDVHIYMSYCTP 385 (455)
Q Consensus 324 ~~~~~~~~~~ls~LL~----~l---------D-g~~~~~~~~~iiI~tTN~----~~~LD~aLlrpgR~d~~I~~~~p~~ 385 (455)
..-..+++.+. .+ + |-.-.-....-||+|.|. ...|+++|.. || +.|.|+.|+.
T Consensus 671 -----~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 671 -----RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 11111111111 00 1 210001123557788883 4689999998 88 6799999999
Q ss_pred HHHHHHHHHHcC
Q 012846 386 CGFDTLAANYLG 397 (455)
Q Consensus 386 ~~r~~l~~~~l~ 397 (455)
+...++.-.-.|
T Consensus 743 ~~i~ei~L~s~G 754 (3245)
T 3vkg_A 743 EMIAQVMLYSQG 754 (3245)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHcc
Confidence 888777654333
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.33 E-value=6.2e-07 Score=106.33 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=71.1
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC---------------------ChHHHHHHHHhc--
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH---------------------SNSELRRVLLST-- 294 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~---------------------~~~~L~~ll~~~-- 294 (455)
|.+.+++++||||||||||+||.+++... +..+..++..... ..+++.+.+...
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37778899999999999999999997765 4455555544321 122333333333
Q ss_pred -CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCC
Q 012846 295 -GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 361 (455)
Q Consensus 295 -~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~ 361 (455)
..+++|+||+++.+.+.....+.... .. .....+.++++|..|++.....+ ++|++||.+
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~--~~--~~~~~R~lsqlL~~L~~~~~~~~---v~VI~tNq~ 1563 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGD--SH--MGLAARMMSQAMRKLAGNLKQSN---TLLIFINQI 1563 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTC--CC--TTHHHHHHHHHHHHHHHHHHTTT---CEEEEEECE
T ss_pred cCCCCEEEEcChhHhcccccccccccc--cc--cchHHHHHHHHHHHHHHHHHhCC---cEEEEEccc
Confidence 68999999999988764322111110 00 00134567889999988866533 445556643
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.08 E-value=1e-05 Score=73.05 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=23.4
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCce
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDI 273 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~ 273 (455)
.+.|.||+|+|||||++.|+..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 378999999999999999999886544
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.99 E-value=3.8e-05 Score=76.10 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=80.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CC-ceEEeeccccCChHHHHHHHHhc------CCceEEEEecccc-cccccc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NF-DIYDLELSAVHSNSELRRVLLST------GNRSILVVEDIDC-SLELED 313 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~-~~~~l~~~~~~~~~~L~~ll~~~------~~~sIlliDeiD~-l~~~~~ 313 (455)
...||||||+|+||++.++++++.+ +. +...+.... +.++++++..+ ..+-|++|||+|. +..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~--- 91 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA--- 91 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT---
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh---
Confidence 5689999999999999999998865 32 222222221 23344444332 3578999999986 421
Q ss_pred ccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCC------CCCccccCCCceeeEEEeCCCCHHH
Q 012846 314 RQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKD------RLDPAVLRPGRMDVHIYMSYCTPCG 387 (455)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~------~LD~aLlrpgR~d~~I~~~~p~~~~ 387 (455)
...+.|+..++.. .+..++|++|+.++ .+.+++.. |. ..+.+..++..+
T Consensus 92 ------------------~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~ 146 (343)
T 1jr3_D 92 ------------------AINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQ 146 (343)
T ss_dssp ------------------THHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTH
T ss_pred ------------------HHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHH
Confidence 1245677777653 23455665555433 35567776 55 578899999888
Q ss_pred HHHHHHHHcCCCC
Q 012846 388 FDTLAANYLGITD 400 (455)
Q Consensus 388 r~~l~~~~l~~~~ 400 (455)
....++..+...+
T Consensus 147 l~~~l~~~~~~~g 159 (343)
T 1jr3_D 147 LPRWVAARAKQLN 159 (343)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 8877777665443
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.96 E-value=0.00011 Score=78.04 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=92.1
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHH-------cCCceEEeecc
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY-------LNFDIYDLELS 279 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~-------l~~~~~~l~~~ 279 (455)
|.....++|.+...+.|.+.+..- ....+-++++||+|+|||+||..+++. ....++.++++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 444567899888888777665310 112456899999999999999998642 22235555443
Q ss_pred ccCCh-------------------------------HHHHHHHHhcCCceEEEEeccccccccccccCCCccccccCCCc
Q 012846 280 AVHSN-------------------------------SELRRVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLR 328 (455)
Q Consensus 280 ~~~~~-------------------------------~~L~~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~ 328 (455)
..... ..++..+....++.+|||||++...
T Consensus 189 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~------------------- 249 (591)
T 1z6t_A 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW------------------- 249 (591)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------
T ss_pred CCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------
Confidence 32100 1122222222367999999997421
Q ss_pred cchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEE-eCCCCHHHHHHHHHHHcCCCCCCcHHHH
Q 012846 329 PMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIY-MSYCTPCGFDTLAANYLGITDHPLIYEI 407 (455)
Q Consensus 329 ~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~-~~~p~~~~r~~l~~~~l~~~~~~l~~~i 407 (455)
.+..+ +.+..||+||..+.... ... |.. ..+. +...+.++-.+++..+.+.......+..
T Consensus 250 --------~l~~l-------~~~~~ilvTsR~~~~~~--~~~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~ 310 (591)
T 1z6t_A 250 --------VLKAF-------DSQCQILLTTRDKSVTD--SVM-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQA 310 (591)
T ss_dssp --------HHHTT-------CSSCEEEEEESCGGGGT--TCC-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHH
T ss_pred --------HHHHh-------cCCCeEEEECCCcHHHH--hcC-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHH
Confidence 11111 11234556766543211 111 222 2232 2467888888999888765322223455
Q ss_pred HHHhhcCCCCHHHH
Q 012846 408 KEIMQNVRVTPADV 421 (455)
Q Consensus 408 ~~l~~~~~~tpa~i 421 (455)
..+++..+..|.-|
T Consensus 311 ~~i~~~~~G~PLal 324 (591)
T 1z6t_A 311 HSIIKECKGSPLVV 324 (591)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHhCCCcHHH
Confidence 66666666666544
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.83 E-value=8.6e-05 Score=68.06 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=31.9
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSA 280 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~ 280 (455)
|.+.+.-++|+||||+|||+++..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4666667899999999999999999985566777666544
No 108
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.76 E-value=0.00038 Score=79.80 Aligned_cols=165 Identities=18% Similarity=0.165 Sum_probs=95.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc-------CCceEEeec
Q 012846 206 HPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL-------NFDIYDLEL 278 (455)
Q Consensus 206 ~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l-------~~~~~~l~~ 278 (455)
.|.....++|.++..++|.+.+... ....+-+.|+|++|+|||+||+.+++.. ...++.++.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 4555677899998888887766311 1123568899999999999999987652 223445555
Q ss_pred cccCC---------------------------hHHHHHHHHhc----CCceEEEEeccccccccccccCCCccccccCCC
Q 012846 279 SAVHS---------------------------NSELRRVLLST----GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPL 327 (455)
Q Consensus 279 ~~~~~---------------------------~~~L~~ll~~~----~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~ 327 (455)
+.... ...+...+... .++.+|+|||++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~----------------- 250 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWV----------------- 250 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHH-----------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHH-----------------
Confidence 44211 11222222211 3488999999984310
Q ss_pred ccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC-CCHHHHHHHHHHHcCCCCCCcHHH
Q 012846 328 RPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSY-CTPCGFDTLAANYLGITDHPLIYE 406 (455)
Q Consensus 328 ~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~-p~~~~r~~l~~~~l~~~~~~l~~~ 406 (455)
++.+ . .+.-||.||..+.-... +. .....+.++. ++.++-.+|+..+.......+.+.
T Consensus 251 -------------~~~~--~--~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~ 309 (1249)
T 3sfz_A 251 -------------LKAF--D--NQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAE 309 (1249)
T ss_dssp -------------HTTT--C--SSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTH
T ss_pred -------------HHhh--c--CCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHH
Confidence 1111 1 12346667765543211 11 2234577775 888888889988775544334444
Q ss_pred HHHHhhcCCCCHH
Q 012846 407 IKEIMQNVRVTPA 419 (455)
Q Consensus 407 i~~l~~~~~~tpa 419 (455)
..++++..+.-|-
T Consensus 310 ~~~i~~~~~glPL 322 (1249)
T 3sfz_A 310 AHSIIKECKGSPL 322 (1249)
T ss_dssp HHHHHHHTTTCHH
T ss_pred HHHHHHHhCCCHH
Confidence 5556655555553
No 109
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.65 E-value=0.00014 Score=72.72 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=47.5
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC---------------------ChHHHHHHHH---h
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH---------------------SNSELRRVLL---S 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~---------------------~~~~L~~ll~---~ 293 (455)
|.+.+.-++|+||||+|||+|+..+|..+ +..++.++..... +..++...+. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45666678999999999999999998764 5566666554321 1122222222 2
Q ss_pred cCCceEEEEeccccccc
Q 012846 294 TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 294 ~~~~sIlliDeiD~l~~ 310 (455)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 24678999999998875
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.65 E-value=0.00015 Score=66.79 Aligned_cols=29 Identities=28% Similarity=0.189 Sum_probs=24.0
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
|.+.+..++|+||||+|||+|+..++..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45556678999999999999999998653
No 111
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.62 E-value=0.00022 Score=66.39 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=30.6
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHH--c-------CCceEEeeccc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNY--L-------NFDIYDLELSA 280 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~--l-------~~~~~~l~~~~ 280 (455)
|.+.+.-++|+||||+|||+|+..+|.. + +...+.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4566677999999999999999999984 3 34566665443
No 112
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.58 E-value=3.7e-05 Score=68.88 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=29.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
++.++|.||||+|||++++.+|..+++++++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999999988654
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.58 E-value=5.6e-05 Score=67.13 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=30.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEeecc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~ 279 (455)
.-++|.||||+|||+++++++..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4689999999999999999999999988876643
No 114
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.58 E-value=8.9e-05 Score=73.15 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=31.6
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---------CCceEEeeccc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---------NFDIYDLELSA 280 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---------~~~~~~l~~~~ 280 (455)
|.+.+.-++|+||||+|||+++..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56666779999999999999999998764 45666666554
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.54 E-value=0.00026 Score=71.12 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=48.2
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC---------------------ChHHHHHHHHh---
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH---------------------SNSELRRVLLS--- 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~---------------------~~~~L~~ll~~--- 293 (455)
|.+.++.++|+||||+|||+|+..+|..+ +.++..++...-. +..++...+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56666779999999999999999987654 5566666554321 11233333332
Q ss_pred cCCceEEEEeccccccc
Q 012846 294 TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 294 ~~~~sIlliDeiD~l~~ 310 (455)
.....+||||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 24678999999998864
No 116
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.54 E-value=7.7e-05 Score=65.55 Aligned_cols=32 Identities=28% Similarity=0.257 Sum_probs=28.7
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
-++|.||||+||||+++.++..+++++++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 47899999999999999999999999877653
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.52 E-value=0.00017 Score=71.95 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=47.1
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC---------------------ChHHHHHHHH---h
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH---------------------SNSELRRVLL---S 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~---------------------~~~~L~~ll~---~ 293 (455)
|.+.++-++|+||||+|||+|+..+|..+ +..+..++..... +..++..++. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56666779999999999999999998654 4556655543321 1122233322 2
Q ss_pred cCCceEEEEeccccccc
Q 012846 294 TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 294 ~~~~sIlliDeiD~l~~ 310 (455)
...+.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 23589999999998874
No 118
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.51 E-value=0.00019 Score=71.82 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=49.1
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC---------------------ChHHHHHHHHh---
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH---------------------SNSELRRVLLS--- 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~---------------------~~~~L~~ll~~--- 293 (455)
|.+.++.++|+||||+|||+|+..+|..+ +..+..++..... +...+..++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56667789999999999999999998654 5667767653321 12233333332
Q ss_pred cCCceEEEEeccccccc
Q 012846 294 TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 294 ~~~~sIlliDeiD~l~~ 310 (455)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 34688999999998864
No 119
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.50 E-value=5.3e-05 Score=68.04 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=29.3
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+.+.-++|.|+||+||||+++.++..++.++++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3456789999999999999999999999887763
No 120
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=6.1e-05 Score=68.64 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=29.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
...++|.||||+|||++++++|..+++++++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 457999999999999999999999999987654
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.48 E-value=0.00022 Score=84.84 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=52.9
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccCCh------------------------HHHHHHHHh
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVHSN------------------------SELRRVLLS 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~~~------------------------~~L~~ll~~ 293 (455)
|.+.++.++|+||||||||+|+.+++.+. |.+.+.+++.+.... ..+...+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57778889999999999999999997543 677777776654221 123334445
Q ss_pred cCCceEEEEeccccccccc
Q 012846 294 TGNRSILVVEDIDCSLELE 312 (455)
Q Consensus 294 ~~~~sIlliDeiD~l~~~~ 312 (455)
...+.+|+||++..+.+..
T Consensus 1157 ~~~~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHH
T ss_pred hCCCCEEEECCcccccccc
Confidence 5689999999999986533
No 122
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.44 E-value=0.00031 Score=69.92 Aligned_cols=40 Identities=18% Similarity=0.064 Sum_probs=30.9
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---------CCceEEeeccc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---------NFDIYDLELSA 280 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---------~~~~~~l~~~~ 280 (455)
|.+.+.-++|+||||+|||+|+..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56666668999999999999999998862 44566666544
No 123
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.39 E-value=0.0063 Score=64.18 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=90.9
Q ss_pred cccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHH----HcCCc---eEEeeccccC----
Q 012846 214 AMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSN----YLNFD---IYDLELSAVH---- 282 (455)
Q Consensus 214 ~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~----~l~~~---~~~l~~~~~~---- 282 (455)
+|.++.+++|.+.+..- +....+.+.++|++|+|||+||+.+++ ..... .+.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 48888888888877321 112245688999999999999999997 23221 2233433310
Q ss_pred --------------------------ChHHHHHHHHhc--CC-ceEEEEeccccccccccccCCCccccccCCCccchhh
Q 012846 283 --------------------------SNSELRRVLLST--GN-RSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVT 333 (455)
Q Consensus 283 --------------------------~~~~L~~ll~~~--~~-~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (455)
+...+...+... .+ +.+|||||++....
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~----------------------- 257 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET----------------------- 257 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH-----------------------
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh-----------------------
Confidence 001122333221 33 79999999985311
Q ss_pred HhhHhhhhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHHcCCCCC-Cc-HHHHHHHh
Q 012846 334 LSGLLNFLDGLWSSCGDERIIVFTTNHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLGITDH-PL-IYEIKEIM 411 (455)
Q Consensus 334 ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~~~~~-~l-~~~i~~l~ 411 (455)
+ . +. +. +| ..||.||....-. .. .. ..+..+.++..+.++-.+|+..+...... +. .+...+++
T Consensus 258 ~-~-~~---~~---~g--s~ilvTTR~~~v~-~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~ 323 (549)
T 2a5y_B 258 I-R-WA---QE---LR--LRCLVTTRDVEIS-NA-AS--QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTI 323 (549)
T ss_dssp H-H-HH---HH---TT--CEEEEEESBGGGG-GG-CC--SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHH
T ss_pred h-c-cc---cc---CC--CEEEEEcCCHHHH-HH-cC--CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 0 1 11 11 12 3455666643221 11 11 23456899999999999999987543321 22 22345555
Q ss_pred hcCCCCHHHHH
Q 012846 412 QNVRVTPADVG 422 (455)
Q Consensus 412 ~~~~~tpa~i~ 422 (455)
+..+..|--+.
T Consensus 324 ~~c~GlPLAl~ 334 (549)
T 2a5y_B 324 ELSSGNPATLM 334 (549)
T ss_dssp HHHTTCHHHHH
T ss_pred HHhCCChHHHH
Confidence 65566665544
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.38 E-value=0.00032 Score=70.02 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=25.6
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
|++.+.-+.|+||||+|||+|+..++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56666779999999999999999999876
No 125
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.37 E-value=9e-05 Score=66.12 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=28.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
++.++|.||||+|||++++++|..++..+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 356999999999999999999999998877553
No 126
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.36 E-value=9.8e-05 Score=66.85 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc---CCceEEe
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDL 276 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l 276 (455)
.-++++||||+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999986665543 5554433
No 127
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.36 E-value=0.00027 Score=65.13 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.6
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
|.+.+.-+.|.||+|+|||+|++.|+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556668999999999999999999854
No 128
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.36 E-value=0.0001 Score=65.97 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=28.3
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.|+|.|+||+|||++++.+|..+++++++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999999988654
No 129
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.36 E-value=9.1e-05 Score=65.84 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=27.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.++|.||||+|||+++++||..+++++++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5899999999999999999999998887643
No 130
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.33 E-value=0.00012 Score=64.55 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
..++|.|+||+|||++++.+|..+++++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46899999999999999999999999998754
No 131
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.32 E-value=0.00011 Score=65.98 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=28.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH-cCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY-LNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~-l~~~~~~l~ 277 (455)
+..++|.|+||+|||++++.+|.. +++++++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 456999999999999999999999 788777654
No 132
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.30 E-value=0.00017 Score=63.63 Aligned_cols=30 Identities=40% Similarity=0.753 Sum_probs=27.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
..+.|.||||+||||+++.+|..++.++++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 468999999999999999999999987665
No 133
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.28 E-value=0.00039 Score=67.37 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=28.7
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
.+.-++|.||||+||||++++++..++...+.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34568999999999999999999998555566654
No 134
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.28 E-value=0.0007 Score=63.08 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHH
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMS 266 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA 266 (455)
|.+.+.-+.|.||+|+|||+|+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45556679999999999999999998
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.26 E-value=0.00019 Score=65.28 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+.-|+|.||||+|||++++.++..++.++++++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 345899999999999999999999999887653
No 136
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.24 E-value=0.00038 Score=68.32 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=24.2
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHH
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
|.+.+.-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5666667899999999999999999875
No 137
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.24 E-value=0.00015 Score=63.91 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=27.9
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
-++|.|+||+|||++++.+|..+++++++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 5899999999999999999999999877643
No 138
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.23 E-value=0.00018 Score=68.35 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=29.5
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeecc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~~ 279 (455)
-++|.||||+|||+++++||..++.+++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999998877653
No 139
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.22 E-value=0.00017 Score=63.04 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=26.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
-++|.||||+|||++++.+ ..++++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8899887764
No 140
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.20 E-value=0.00018 Score=64.49 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+.-|+|.|+||+|||++++.++..++.++++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 34689999999999999999999999877654
No 141
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.18 E-value=0.00017 Score=66.63 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=28.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
.-++|.|+||+|||++++.||..+++++++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999999887765
No 142
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.18 E-value=0.0011 Score=65.08 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=44.0
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc-----CCceEEeeccccC---------------------ChHHH-HHHHHh
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL-----NFDIYDLELSAVH---------------------SNSEL-RRVLLS 293 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l-----~~~~~~l~~~~~~---------------------~~~~L-~~ll~~ 293 (455)
|.+.. -++++||||+|||+|+..++..+ +..+..++...-. +.+++ ..++..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 47899999999999977775433 4556666544321 11222 222222
Q ss_pred -----cCCceEEEEeccccccc
Q 012846 294 -----TGNRSILVVEDIDCSLE 310 (455)
Q Consensus 294 -----~~~~sIlliDeiD~l~~ 310 (455)
...+.+|+||-|..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 23689999999999874
No 143
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.18 E-value=0.00019 Score=64.08 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
.+.-++|.|+||+|||++++.++..++.++++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 345689999999999999999999999877765
No 144
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.16 E-value=0.00022 Score=62.51 Aligned_cols=31 Identities=32% Similarity=0.449 Sum_probs=27.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.|+|.|+||+|||++++.++..+++++++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4789999999999999999999999887654
No 145
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.16 E-value=0.00026 Score=64.37 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=28.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+.-++|.||||+||||+++.|+..++..+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 346999999999999999999999988776543
No 146
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.15 E-value=0.00079 Score=68.42 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHH
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
|++...-++|+||||+|||+|+..+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 5666667899999999999999977643
No 147
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.15 E-value=0.00022 Score=64.05 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=28.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+.-++|.||||+|||++++.+|..++.++++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 346899999999999999999999998877654
No 148
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.13 E-value=0.0002 Score=63.92 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=25.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC-----CceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN-----FDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~-----~~~~~ 275 (455)
.-++|.||||+||||+++.|+..++ ++++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 4589999999999999999999887 55553
No 149
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.12 E-value=0.00098 Score=70.94 Aligned_cols=63 Identities=24% Similarity=0.335 Sum_probs=40.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccccC----------ChHHHHHHHHhcC-----------CceEEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAVH----------SNSELRRVLLSTG-----------NRSILV 301 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~~----------~~~~L~~ll~~~~-----------~~sIll 301 (455)
+.+++.||||||||+++.+++..+ +..+..+..+... ....+.+++.... ...+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468999999999999999998754 5666655443321 1122344432111 346999
Q ss_pred Eeccccc
Q 012846 302 VEDIDCS 308 (455)
Q Consensus 302 iDeiD~l 308 (455)
|||+..+
T Consensus 285 IDEasml 291 (574)
T 3e1s_A 285 VDEVSMM 291 (574)
T ss_dssp ECCGGGC
T ss_pred EcCccCC
Confidence 9999754
No 150
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.11 E-value=0.00019 Score=64.04 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=27.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
.-++|.||||+||||+++.+|+.++.++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3589999999999999999999999876654
No 151
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.11 E-value=0.00023 Score=64.07 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=28.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+.-|+|.||||+|||++++.++..++.++++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 356899999999999999999999998776553
No 152
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.10 E-value=0.00026 Score=65.01 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=26.8
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
++|.||||+||||+++.+|..++.++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999999888766
No 153
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.10 E-value=0.00016 Score=64.06 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=24.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHH-HcCCceE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN-YLNFDIY 274 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~-~l~~~~~ 274 (455)
.-++|.||||+||||+++.++. .++..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4689999999999999999998 4554443
No 154
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.09 E-value=0.00025 Score=65.88 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=28.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+.-++|.||||+|||++++.||..++.++++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45689999999999999999999999877754
No 155
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.09 E-value=0.0012 Score=63.37 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=23.9
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
|.+.+.-++|+||||+|||+|+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44556679999999999999999998644
No 156
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.08 E-value=0.00064 Score=64.37 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=30.5
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
.+..++|.||||+|||++++.++..++...+.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34568999999999999999999999866666655443
No 157
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.07 E-value=0.00027 Score=63.41 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=28.6
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
..+.-+.|.||||+||||++++|+..++...+.++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 344568999999999999999999987666555543
No 158
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.07 E-value=0.00031 Score=64.82 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=27.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
.-|+|.||||+||||+++.||..++.++++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4689999999999999999999999877765
No 159
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.06 E-value=0.00029 Score=64.66 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=26.7
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
++|.||||+||||+++.++..++.++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999888765
No 160
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.06 E-value=0.00031 Score=62.40 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=22.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIY 274 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~ 274 (455)
.-++|.|+||+|||++++.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999877
No 161
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.01 E-value=0.00045 Score=61.13 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=26.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
..++|.||||+|||++++.++..+|..+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 4588999999999999999999988766543
No 162
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.00 E-value=0.0004 Score=64.79 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=27.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
..|+|.|+||+|||++++.||+.++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4689999999999999999999999877765
No 163
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.00 E-value=0.0004 Score=63.06 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=28.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.-|+|.||||+|||++++.+++.++.++++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 45899999999999999999999998777654
No 164
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.99 E-value=0.0006 Score=60.64 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=29.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
+.-+.|.|++|+|||++++.++..+ |++++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 3457899999999999999999998 888887763
No 165
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.98 E-value=0.00025 Score=65.53 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=27.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+.-|+|.||||+|||++++.||..++..++++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45689999999999999999999999766543
No 166
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.94 E-value=0.0026 Score=58.03 Aligned_cols=108 Identities=9% Similarity=0.093 Sum_probs=65.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc---CCceEEeecccc--C-Ch-----------------------------HHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSAV--H-SN-----------------------------SELRRVL 291 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~~--~-~~-----------------------------~~L~~ll 291 (455)
-+++|+++|+|||++|-++|-.. |..++.+....- . .+ ......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 48899999999999999997543 777776643221 0 00 1111112
Q ss_pred ----Hhc--CCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCCCCC
Q 012846 292 ----LST--GNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKDRLD 365 (455)
Q Consensus 292 ----~~~--~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~~LD 365 (455)
... ..-.+|+|||+-.... ..-.....++..+.. ..+..-||+|+|.+ +
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~------------------~g~l~~~ev~~~l~~----Rp~~~~vIlTGr~a---p 164 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVA------------------YDYLPLEEVISALNA----RPGHQTVIITGRGC---H 164 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHH------------------TTSSCHHHHHHHHHT----SCTTCEEEEECSSC---C
T ss_pred HHHHHHHhcCCCCEEEEeCCCcccc------------------CCCCCHHHHHHHHHh----CcCCCEEEEECCCC---c
Confidence 112 2457999999976543 112234556666543 23457788899874 5
Q ss_pred ccccCCCceeeEEEeC
Q 012846 366 PAVLRPGRMDVHIYMS 381 (455)
Q Consensus 366 ~aLlrpgR~d~~I~~~ 381 (455)
++|+. .-|.+-+|.
T Consensus 165 ~~l~e--~AD~VTem~ 178 (196)
T 1g5t_A 165 RDILD--LADTVSELR 178 (196)
T ss_dssp HHHHH--HCSEEEECC
T ss_pred HHHHH--hCcceeeec
Confidence 67776 667666654
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.92 E-value=0.00066 Score=61.72 Aligned_cols=31 Identities=16% Similarity=0.442 Sum_probs=26.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
+.-+.|.||+|+||||++++|+..+|..+++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4568899999999999999999999765543
No 168
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.91 E-value=0.00069 Score=60.57 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=28.3
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
-+.|.|+||+||||+++.+++.+ |++++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 37899999999999999999988 888887753
No 169
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.89 E-value=0.00053 Score=64.64 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=28.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+.-++|.||||+||||+++.|++.++.+.++.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 45689999999999999999999998877765
No 170
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.88 E-value=0.0006 Score=67.19 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=30.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
++.++|.||+|+|||+++.++|+.++..++++|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4578999999999999999999999988888764
No 171
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.88 E-value=0.00045 Score=63.45 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=27.2
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
.++|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999888765
No 172
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.88 E-value=0.0061 Score=68.60 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=38.5
Q ss_pred cccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHH------cCCceEEeeccc
Q 012846 214 AMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY------LNFDIYDLELSA 280 (455)
Q Consensus 214 ~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~------l~~~~~~l~~~~ 280 (455)
+|.+...++|.+.+.. . ...+-+.++||+|.|||+||+.+++. ....++.++.+.
T Consensus 131 VGRe~eLeeL~elL~~---~---------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE---L---------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHH---C---------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhc---c---------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 7888888888776641 0 11357899999999999999999863 244455555543
No 173
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.85 E-value=0.00075 Score=62.76 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=26.9
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHcCCceE
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYLNFDIY 274 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l~~~~~ 274 (455)
.++.++|.||||+||+|.|+.||+.++++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 3567889999999999999999999987654
No 174
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.79 E-value=0.00088 Score=62.94 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=26.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
+.-+.|.||||+||||+++.|+..++...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568999999999999999999999876554
No 175
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.77 E-value=0.0016 Score=58.95 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=24.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFD 272 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~ 272 (455)
.-|+|.||||+||||+++.|+..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 458899999999999999999998763
No 176
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.77 E-value=0.0016 Score=67.16 Aligned_cols=65 Identities=25% Similarity=0.261 Sum_probs=38.8
Q ss_pred eecCCCCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CC-ceEEee
Q 012846 202 ITFNHPATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NF-DIYDLE 277 (455)
Q Consensus 202 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~-~~~~l~ 277 (455)
++...|.+|+++ .+++++.+... ..++... ...+++.||||||||+++.+++..+ +. .++.+.
T Consensus 15 ~~~~~p~~~~~L--n~~Q~~av~~~-~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 15 VPRGSHMTFDDL--TEGQKNAFNIV-MKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp ------CCSSCC--CHHHHHHHHHH-HHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred ccccCCCccccC--CHHHHHHHHHH-HHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 345667788886 45555554433 3333321 2379999999999999999998876 33 455554
Q ss_pred cc
Q 012846 278 LS 279 (455)
Q Consensus 278 ~~ 279 (455)
.+
T Consensus 82 ~T 83 (459)
T 3upu_A 82 PT 83 (459)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 177
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.77 E-value=0.00085 Score=62.23 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=26.2
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
++|.||||+||||+++.|+..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999999876654
No 178
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.74 E-value=0.00087 Score=60.39 Aligned_cols=29 Identities=31% Similarity=0.680 Sum_probs=25.7
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
-+.|.|+||+||||+++.+|+.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999986653
No 179
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.72 E-value=0.001 Score=60.18 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=28.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc-CCceEEeec
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL-NFDIYDLEL 278 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l-~~~~~~l~~ 278 (455)
.-|.|.||||+||||+++.++..+ +++++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 458899999999999999999998 588877654
No 180
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.72 E-value=0.00068 Score=61.52 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=26.7
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
-+.|.||+|+|||++++.+|+ +|+++++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 888887765
No 181
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.71 E-value=0.00096 Score=61.47 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=25.0
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
++|.||||+||+|.|+.||+.++++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 7889999999999999999999876553
No 182
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.70 E-value=0.0012 Score=59.26 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=26.6
Q ss_pred eEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
|.|.||+|+||||+++.+++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6899999999999999999998 998876543
No 183
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.70 E-value=0.0011 Score=60.97 Aligned_cols=30 Identities=33% Similarity=0.584 Sum_probs=26.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
.-+.|.||+|+||||+++.+++.+++++++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999987765
No 184
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.70 E-value=0.00059 Score=60.87 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=22.2
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcC
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~ 270 (455)
-|+|.||||+||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999886
No 185
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.69 E-value=0.00066 Score=67.64 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 215 MEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 215 g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
..+.+.+.+.+.+...+.. | ....++|.||||+|||+++++||+.++++++.
T Consensus 3 ~~~~L~~~il~~l~~~i~~-------g--~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIED-------N--YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTT-------C--SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcc-------C--CeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 3455666666666544322 1 12469999999999999999999999988744
No 186
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.66 E-value=0.00096 Score=60.40 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=28.3
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
-+.|.||+|+|||++++.+|..+++++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999999888754
No 187
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.64 E-value=0.00099 Score=63.29 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=29.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+..+.|.||+|+|||++++.||..+++++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 356999999999999999999999999888754
No 188
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.62 E-value=0.0051 Score=57.00 Aligned_cols=49 Identities=27% Similarity=0.250 Sum_probs=34.2
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHH----cCCceEEeeccccCChHHHHHHH
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNY----LNFDIYDLELSAVHSNSELRRVL 291 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~----l~~~~~~l~~~~~~~~~~L~~ll 291 (455)
|.+.+.-++++|+||+|||+++..+|.. .+.+++.+++.. +...+.+.+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC--CHHHHHHHH
Confidence 5666677999999999999999877533 366777776553 344444444
No 189
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.61 E-value=0.0015 Score=62.13 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=27.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH---cCCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY---LNFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~---l~~~~~~l~ 277 (455)
.-|+|.|+||+|||++++.++.. .|++++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45899999999999999999998 788877454
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.61 E-value=0.00091 Score=60.82 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=26.2
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.+.|.||+|+||||+++.+|. +|.++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 478999999999999999998 888887654
No 191
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.60 E-value=0.0014 Score=61.49 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=28.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+.-+.|.||||+|||++++.||..+++++++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 34689999999999999999999999887654
No 192
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.57 E-value=0.0011 Score=60.32 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=28.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.-+.|.|++|+|||++++.++..+|+++++.|
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 34789999999999999999999998888754
No 193
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.57 E-value=0.015 Score=61.36 Aligned_cols=73 Identities=8% Similarity=0.126 Sum_probs=47.4
Q ss_pred eEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCCCC--CCCccccCCCcee
Q 012846 298 SILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNHKD--RLDPAVLRPGRMD 375 (455)
Q Consensus 298 sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~~~--~LD~aLlrpgR~d 375 (455)
-+|+|||+..++.... + .+...+..|-..... -++-+|++|.+|. .|+..+.. -|.
T Consensus 345 ivvVIDE~~~L~~~~~-----------------~-~~~~~L~~Iar~GRa--~GIhLIlaTQRPs~d~I~~~Ira--n~~ 402 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----------------K-KVEELIARIAQKARA--AGIHLILATQRPSVDVITGLIKA--NIP 402 (574)
T ss_dssp EEEEESCCTTHHHHTC-----------------H-HHHHHHHHHHHHCTT--TTEEEEEEESCCCTTTSCHHHHH--TCC
T ss_pred EEEEEeCHHHHhhhhh-----------------H-HHHHHHHHHHHHHhh--CCeEEEEEecCcccccccHHHHh--hhc
Confidence 5899999998864110 0 112222222222122 3488999999987 78877765 577
Q ss_pred eEEEeCCCCHHHHHHHH
Q 012846 376 VHIYMSYCTPCGFDTLA 392 (455)
Q Consensus 376 ~~I~~~~p~~~~r~~l~ 392 (455)
..|.+...+..+-+.++
T Consensus 403 ~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 403 TRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp EEEEECCSCHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHhc
Confidence 78889988888877666
No 194
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.57 E-value=0.0019 Score=58.52 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=26.2
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~ 277 (455)
+.-+.|.||+|+||||++++||..+ |...+.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4568899999999999999999988 44433444
No 195
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.51 E-value=0.01 Score=60.87 Aligned_cols=100 Identities=15% Similarity=0.272 Sum_probs=65.2
Q ss_pred ChHHHHH-HHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccC------CCCceEEE
Q 012846 283 SNSELRR-VLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSS------CGDERIIV 355 (455)
Q Consensus 283 ~~~~L~~-ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~------~~~~~iiI 355 (455)
+.+.+.+ .+..+...+||++||||.+...... . ..+. ...-....||..||+.... ..+++++|
T Consensus 236 ~~~~~~~~ai~~ae~~~il~~DEidki~~~~~~--~--~~D~-----s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI 306 (444)
T 1g41_A 236 NPEELKQKAIDAVEQNGIVFIDEIDKICKKGEY--S--GADV-----SREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 306 (444)
T ss_dssp CHHHHHHHHHHHHHHHCEEEEETGGGGSCCSSC--S--SSHH-----HHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred CHHHHHHHHHHHhccCCeeeHHHHHHHhhccCC--C--CCCc-----hHHHHHHHHHHHhcccccccccceecCCcEEEE
Confidence 3344443 3344447789999999999752211 0 0000 1112446789999874211 12468888
Q ss_pred Eec----CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 012846 356 FTT----NHKDRLDPAVLRPGRMDVHIYMSYCTPCGFDTLAA 393 (455)
Q Consensus 356 ~tT----N~~~~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~ 393 (455)
+|. +.|.++-|.|+. ||+.+|.++.++.+++..|+.
T Consensus 307 ~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 307 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred eccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 886 345556688887 999999999999999999984
No 196
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.50 E-value=0.00071 Score=61.56 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=25.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIY 274 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~ 274 (455)
+.-|.|.|+||+||||+++.+++.++...+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 345899999999999999999998765433
No 197
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.49 E-value=0.0014 Score=59.10 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+.-+.|.|++|+|||++++.+|.. |+++++.+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 346889999999999999999998 88887655
No 198
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.47 E-value=0.0061 Score=56.78 Aligned_cols=62 Identities=13% Similarity=0.236 Sum_probs=39.7
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccc-------cC-------------ChHHHHHHHHhc---CCceEE
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSA-------VH-------------SNSELRRVLLST---GNRSIL 300 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~-------~~-------------~~~~L~~ll~~~---~~~sIl 300 (455)
-++++||||+|||+++-.++..+ +..++.+.... +. ...++.+.+... ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 46888999999999888887655 55555552111 11 123444444432 247899
Q ss_pred EEeccccc
Q 012846 301 VVEDIDCS 308 (455)
Q Consensus 301 liDeiD~l 308 (455)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999754
No 199
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.41 E-value=0.0065 Score=56.84 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=27.2
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeecc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~~ 279 (455)
.++++||+|+|||.++.+++..++..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999988887766665433
No 200
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.39 E-value=0.0025 Score=59.43 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=26.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
-.+++.|+||+|||+++-++|..+ |..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 458999999999999999998765 667665444
No 201
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.39 E-value=0.0019 Score=59.17 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
..+.|.|++|+|||++++.++..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 46889999999999999999999998887654
No 202
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.34 E-value=0.0023 Score=58.26 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.5
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.++-++|.||||+|||++++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456789999999999999999999885
No 203
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.34 E-value=0.0024 Score=57.00 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
++-+.|.||+|+|||||++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998764
No 204
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.33 E-value=0.002 Score=59.15 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=26.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.-+.|.|++|+|||++++.++. +|+++++.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4588999999999999999998 888877654
No 205
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.31 E-value=0.0012 Score=60.20 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=23.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
+.-|.|.|+||+||||+++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999998643
No 206
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.31 E-value=0.0054 Score=54.26 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.4
Q ss_pred CceeEEeCCCCCChHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAA 264 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~a 264 (455)
+.-+.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 44588999999999999993
No 207
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.30 E-value=0.015 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999754
No 208
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.30 E-value=0.0031 Score=59.64 Aligned_cols=30 Identities=33% Similarity=0.586 Sum_probs=27.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
.-+.|.||+|+||||+++.||..+|+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 458899999999999999999999987764
No 209
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.29 E-value=0.0059 Score=65.79 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=33.9
Q ss_pred ccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeeccc
Q 012846 213 LAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELSA 280 (455)
Q Consensus 213 l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~~ 280 (455)
=-+++++++.|...+. . +.-.|++||||||||+++..+...+ +..+..+..+.
T Consensus 188 ~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp TTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 3468888887766542 1 1246899999999997655554332 55565555543
No 210
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.28 E-value=0.0019 Score=59.11 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=27.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
+++++|.||+|+|||+|+.+++...+ .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46899999999999999999998876 555444
No 211
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.28 E-value=0.0027 Score=62.09 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=29.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeecc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~ 279 (455)
++-+++.||+|+|||+|+..+|..++..++..|.-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 45688999999999999999999998877776543
No 212
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.26 E-value=0.0034 Score=74.02 Aligned_cols=114 Identities=14% Similarity=0.228 Sum_probs=62.9
Q ss_pred hhCC-CCCce--eEEeCCCCCChHHHHHHHHHH---cCCceEEeeccccC---------------------C-hHH--HH
Q 012846 239 RVGK-AWKRG--YLLYGPPGTGKSSLIAAMSNY---LNFDIYDLELSAVH---------------------S-NSE--LR 288 (455)
Q Consensus 239 ~~g~-~~~rg--iLL~GppGTGKT~la~aiA~~---l~~~~~~l~~~~~~---------------------~-~~~--L~ 288 (455)
.+|. -+||| +++|||+|||||+|+..++.+ .|-....++...-. + +.. +.
T Consensus 1422 ~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1422 ALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp HTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred hcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 3443 44444 999999999999998776533 34444444433211 1 112 22
Q ss_pred HHHHhcCCceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEec
Q 012846 289 RVLLSTGNRSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTT 358 (455)
Q Consensus 289 ~ll~~~~~~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tT 358 (455)
+.+.+...+.+|+||-+.++.+...-.++.+..... -.-+.+++-|..|.+..+.. +..+||+.
T Consensus 1502 ~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~----~~ar~m~~~lr~l~~~~~~~--~~~~i~~~ 1565 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMG----LAARMMSQAMRKLAGNLKQS--NTLLIFIN 1565 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCCCTTTTC-------CC----HHHHHHHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred HHHHHcCCCCEEEEccHHhCCccccccccccccchh----HHHHHHHHHHHHHHHHHHhC--CcEEEEee
Confidence 333445678999999999998743333222211111 23455667777776665542 34555543
No 213
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.26 E-value=0.0021 Score=63.66 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=31.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
+-++|.||+|+|||+|+..||+.++..+++.|.-.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 468999999999999999999999998888776544
No 214
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.22 E-value=0.0043 Score=63.23 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=30.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEeeccccCChHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAVHSNSELR 288 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~~~~~~L~ 288 (455)
+.-++|.||||+|||++++.++..+++.++ +...+..-..+.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i--~~D~~~~~~~~~ 299 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV--NRDTLGSWQRCV 299 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC--CGGGSCSHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE--ccchHHHHHHHH
Confidence 455889999999999999999999876554 444443333333
No 215
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.22 E-value=0.0035 Score=58.45 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=27.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
+..+.|.|++|+|||++++.+|..+|+++++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 34578999999999999999999999887764
No 216
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.18 E-value=0.003 Score=56.48 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~ 271 (455)
-+.|.||+|+||||+++.|+...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986654
No 217
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.18 E-value=0.0018 Score=62.44 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=25.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc-CCceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL-NFDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l-~~~~~~ 275 (455)
.-|+|.||||+|||++++.++..+ ++.++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 468999999999999999999974 655553
No 218
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.17 E-value=0.0029 Score=59.65 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=25.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFD 272 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~ 272 (455)
+.-|.|.||||+|||++++.|+..++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 3468899999999999999999999876
No 219
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.17 E-value=0.0049 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-++|.|+||+|||++++.+|..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44588999999999999999998874
No 220
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.17 E-value=0.022 Score=59.54 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=31.8
Q ss_pred ceEEEEecCCCC--CCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 012846 351 ERIIVFTTNHKD--RLDPAVLRPGRMDVHIYMSYCTPCGFDTLAA 393 (455)
Q Consensus 351 ~~iiI~tTN~~~--~LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~ 393 (455)
++-+|++|.+|. .++..+.. -+...|.|...+..+.+.++.
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 377888999886 57776665 677888898889888887764
No 221
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.16 E-value=0.002 Score=58.65 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=25.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc-CCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL-NFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l-~~~~~~l~ 277 (455)
.-+.|.||||+|||++++.|+..+ +..++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 457899999999999999999987 55554443
No 222
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.15 E-value=0.004 Score=57.69 Aligned_cols=38 Identities=26% Similarity=0.177 Sum_probs=27.9
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
|.+.+.-++|+||||+|||+++..+|... +..++.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 55666678999999999999988886543 445555443
No 223
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.07 E-value=0.019 Score=52.21 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=25.7
Q ss_pred ceeEEeCCCCCChH-HHHHHHHHHc--CCceEEee
Q 012846 246 RGYLLYGPPGTGKS-SLIAAMSNYL--NFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT-~la~aiA~~l--~~~~~~l~ 277 (455)
+-+++|||.|+||| .|.+++.++. +..++.+.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 45789999999999 8999998754 56666664
No 224
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.06 E-value=0.0034 Score=57.41 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
+.-+.|.||+|+|||++++.|+..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 455889999999999999999998753
No 225
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.05 E-value=0.0032 Score=56.78 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568899999999999999999987
No 226
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.05 E-value=0.012 Score=53.34 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=27.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELS 279 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~ 279 (455)
+.-+.|.||+|+|||++++.++..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3457899999999999999999876 6666665443
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.03 E-value=0.0086 Score=61.66 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=54.1
Q ss_pred ceEEEEeccccccccccccCCCccccccCCCccchhhHhhHhhhhhccccCCCCceEEEEecCC-------------CCC
Q 012846 297 RSILVVEDIDCSLELEDRQAQPTTVNVLKPLRPMQVTLSGLLNFLDGLWSSCGDERIIVFTTNH-------------KDR 363 (455)
Q Consensus 297 ~sIlliDeiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg~~~~~~~~~iiI~tTN~-------------~~~ 363 (455)
|.|++|||+|.+.. ...+.|+..|+.. ...+ +|++||. +..
T Consensus 296 ~~VliIDEa~~l~~---------------------~a~~aLlk~lEe~----~~~~-~il~tn~~~~~i~~~~~~~~~~~ 349 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI---------------------ECFTYLHRALESS----IAPI-VIFASNRGNCVIRGTEDITSPHG 349 (456)
T ss_dssp ECEEEEESGGGCBH---------------------HHHHHHHHHTTST----TCCE-EEEEECCSEEECBTTSSCEEETT
T ss_pred ceEEEEechhhcCH---------------------HHHHHHHHHhhcc----CCCE-EEEecCCcccccccccccccccc
Confidence 47999999998732 3457788887653 2334 5544432 788
Q ss_pred CCccccCCCceeeEEEeCCCCHHHHHHHHHHHcC
Q 012846 364 LDPAVLRPGRMDVHIYMSYCTPCGFDTLAANYLG 397 (455)
Q Consensus 364 LD~aLlrpgR~d~~I~~~~p~~~~r~~l~~~~l~ 397 (455)
|+|.+++ ||.. +.+++++.++..++++..+.
T Consensus 350 l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 350 IPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp CCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHH
T ss_pred CChhHHh--hcce-eeCCCCCHHHHHHHHHHHHH
Confidence 9999999 9976 69999999999999987654
No 228
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.02 E-value=0.024 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
..+++.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999999887643
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.01 E-value=0.0048 Score=56.37 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=26.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC----CceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN----FDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~----~~~~~l~ 277 (455)
+.-++|.|+||+|||++++.++..++ .+++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 45688999999999999999998775 4566554
No 230
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.00 E-value=0.0035 Score=62.15 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=27.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.-+++.||+|+|||+++..||..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46889999999999999999999987666654
No 231
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.96 E-value=0.0035 Score=60.40 Aligned_cols=31 Identities=32% Similarity=0.312 Sum_probs=26.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.-|.|.|+||+||||+++.++ .+|+++++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 458899999999999999999 5788776553
No 232
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.91 E-value=0.014 Score=52.45 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=17.2
Q ss_pred ceeEEeCCCCCChHHH-HHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSL-IAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~l-a~aiA~~ 268 (455)
+.+++.+|+|+|||.. +..+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 5799999999999976 3334443
No 233
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.91 E-value=0.016 Score=59.27 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=26.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
++.+++.||||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3568999999999999999999876 355555543
No 234
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.90 E-value=0.0047 Score=56.42 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=27.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
.-|.|.||+|+|||++++.+|..+|+++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 368899999999999999999999999985
No 235
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.90 E-value=0.0052 Score=55.58 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=23.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCce
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDI 273 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~ 273 (455)
|.++|.||+|+|||+|++.|.....-.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4689999999999999999988764433
No 236
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.89 E-value=0.0044 Score=60.66 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=28.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEeecc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLELS 279 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~~~ 279 (455)
+-+++.||+|+|||+|+..+|..++..++..|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999998776665433
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.88 E-value=0.008 Score=54.80 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||+|+|||||+++|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999999875
No 238
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.86 E-value=0.022 Score=48.36 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.82 E-value=0.0057 Score=55.12 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||+|+||||+++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999999864
No 240
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=95.78 E-value=0.0071 Score=46.38 Aligned_cols=65 Identities=5% Similarity=-0.105 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHHc-------CCCHHHHHHHHHHHHHHH
Q 012846 381 SYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLLK-------NEDPEIALKGLLEFLNAK 445 (455)
Q Consensus 381 ~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~-------~~~~~~al~~l~~~l~~~ 445 (455)
|.|+.++|.+|++.++......-..++..++... ++|+|||..+|.. .+......+.+.+++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 6899999999999999876433333566666654 5999999987742 233333445555555544
No 241
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.77 E-value=0.03 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 242
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.75 E-value=0.0094 Score=58.08 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhchhHHhhhC--CCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 217 AELKKMIIEDLERFVKRKDYYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 217 ~~~k~~i~~~l~~~~~~~~~y~~~g--~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.||..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456666666665554321001122 2334458899999999999999999876
No 243
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.72 E-value=0.013 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
-.+++.|++|+|||+|+.++.+.-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998643
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.70 E-value=0.0059 Score=54.66 Aligned_cols=25 Identities=36% Similarity=0.592 Sum_probs=22.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+-+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998764
No 245
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.70 E-value=0.012 Score=60.34 Aligned_cols=60 Identities=10% Similarity=0.201 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhchh-HHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEee
Q 012846 217 AELKKMIIEDLERFVKRKD-YYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLE 277 (455)
Q Consensus 217 ~~~k~~i~~~l~~~~~~~~-~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~ 277 (455)
+.+++.+.+.+...+.... .... ....++-+++.||+|+||||++..||..+ +..+..++
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~~~-~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPNVN-PTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCCS-CCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhcCcccccccc-ccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3455556666655554321 1101 11235568899999999999999999766 55555444
No 246
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.69 E-value=0.036 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45899999999999999999863
No 247
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.68 E-value=0.023 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.0
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|++|+|||+|+.++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.67 E-value=0.023 Score=55.05 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=39.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc----CCceEEeeccccC----------------------ChHHHHHHHHhcCCce
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL----NFDIYDLELSAVH----------------------SNSELRRVLLSTGNRS 298 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l----~~~~~~l~~~~~~----------------------~~~~L~~ll~~~~~~s 298 (455)
+..++|.||+|+|||+++..||..+ |..+..+++.... +...++..+.....+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 4568999999999999999998765 4455555433221 1123444444455678
Q ss_pred EEEEe
Q 012846 299 ILVVE 303 (455)
Q Consensus 299 IlliD 303 (455)
+|+||
T Consensus 185 lvIiD 189 (296)
T 2px0_A 185 HVFVD 189 (296)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99999
No 249
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.67 E-value=0.019 Score=51.68 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=15.0
Q ss_pred ceeEEeCCCCCChHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIA 263 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~ 263 (455)
+.+++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 679999999999996433
No 250
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.66 E-value=0.028 Score=48.09 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.9
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 251
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.63 E-value=0.025 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+++.|++|+|||+|+.++.+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999986
No 252
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.62 E-value=0.081 Score=45.04 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.5
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|++|+|||+|+.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999753
No 253
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.60 E-value=0.0053 Score=55.77 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=24.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC--CceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN--FDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~--~~~~~ 275 (455)
.-+.|.||+|+||||+++.|+..++ ..++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4578999999999999999999987 44443
No 254
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.58 E-value=0.043 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999753
No 255
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.57 E-value=0.031 Score=61.50 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCcccccccHHHHHHHHHHHHHHHh--chhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHH
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVK--RKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~--~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
.+|+++...+...+.+.+.-..+.. .......+ ..+..+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l--~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLY--QNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHH--HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688887777666555433211111 11111111 11346899999999999977776543
No 256
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.55 E-value=0.014 Score=59.78 Aligned_cols=61 Identities=20% Similarity=0.372 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 217 AELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 217 ~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
+.+++.+.+.+...+..+...... ...+.-+++.||||+||||++..+|..+ |..+..+++
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 445666666666655432111111 1135678999999999999999999876 555555543
No 257
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.54 E-value=0.0069 Score=54.95 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
++-+.|.||+|+|||||++.|+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999998763
No 258
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.54 E-value=0.01 Score=63.57 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=29.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEee
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLE 277 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~ 277 (455)
+.-|+|.|+||+||||++++++..+ +.+++.++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 4458999999999999999999999 99999885
No 259
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.50 E-value=0.015 Score=50.00 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=18.8
Q ss_pred eeEEeCCCCCChHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~ 267 (455)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999853
No 260
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.48 E-value=0.016 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999754
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.48 E-value=0.0099 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
++-+.|.||+|+|||+|+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998765
No 262
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.48 E-value=0.012 Score=58.67 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhchhHHhhhC--CCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 217 AELKKMIIEDLERFVKRKDYYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 217 ~~~k~~i~~~l~~~~~~~~~y~~~g--~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.||..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3455566666655554321001122 2334558899999999999999999876
No 263
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.45 E-value=0.0092 Score=58.24 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=27.3
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHcCCce
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYLNFDI 273 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l~~~~ 273 (455)
.++.+..+.|.||+|+|||+|+++|+..+.-.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 456667799999999999999999999884333
No 264
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.43 E-value=0.022 Score=51.66 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=21.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
...++|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998754
No 265
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.41 E-value=0.048 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
...+++.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 266
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.40 E-value=0.0082 Score=60.76 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=27.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~l~ 277 (455)
.-+++.||+|+|||+|+..+|..++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 45789999999999999999999987776654
No 267
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.37 E-value=0.027 Score=48.99 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 268
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.36 E-value=0.0084 Score=56.09 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=26.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEe
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDL 276 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l 276 (455)
-+-|.||||+|||++++.|++.++++.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 356889999999999999999999887644
No 269
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.36 E-value=0.0082 Score=53.98 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=28.8
Q ss_pred eEEeCCCCCChHHHHHHHHHHcCCceEEeecccc
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYLNFDIYDLELSAV 281 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l~~~~~~l~~~~~ 281 (455)
+|++|++|+|||++|..+|.. +.+.+.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 888888877554
No 270
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.35 E-value=0.011 Score=55.17 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=25.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC--CceEEe
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN--FDIYDL 276 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~--~~~~~l 276 (455)
.-+.|.||||+||||+++.|++.++ .+++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 3478899999999999999999986 455443
No 271
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.35 E-value=0.012 Score=51.69 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.4
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.+.-+.|.||.|+|||+|+++|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334458899999999999999999987
No 272
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.34 E-value=0.013 Score=60.82 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-++|.||+|+|||||++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4458899999999999999999876
No 273
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.31 E-value=0.0092 Score=57.44 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=24.7
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
|.+.+.-++|.||||+|||+|+..||..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55666678999999999999999998765
No 274
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.30 E-value=0.028 Score=54.86 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=30.4
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELS 279 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~ 279 (455)
|.+.+.-++|.|+||+|||+++..+|... +.++..+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 56666679999999999999999998654 3566666654
No 275
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.30 E-value=0.024 Score=48.98 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+++.|+||+|||+|+.++.+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3589999999999999999964
No 276
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.28 E-value=0.01 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+|||+|++.|+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4558899999999999999999977
No 277
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.26 E-value=0.021 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+++.|++|+|||+|+.++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 278
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.26 E-value=0.028 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|++|+|||+|+.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 279
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.24 E-value=0.027 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999863
No 280
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.24 E-value=0.036 Score=47.95 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 281
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.22 E-value=0.029 Score=49.59 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 282
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.20 E-value=0.012 Score=53.64 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||+|+|||||+++|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999999875
No 283
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.19 E-value=0.039 Score=48.57 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 284
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.19 E-value=0.0038 Score=56.70 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.2
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~ 271 (455)
-+.|.||+|+||||+++.|+..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999998853
No 285
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.15 E-value=0.013 Score=54.37 Aligned_cols=28 Identities=39% Similarity=0.497 Sum_probs=23.7
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.+.-+.|.||+|+|||||+++|+....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3455688999999999999999999875
No 286
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.15 E-value=0.015 Score=56.79 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 219 LKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 219 ~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
+++.+.+.+...+...... .+....+.-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4555555555554332100 1112234568899999999999999999876 445554443
No 287
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.12 E-value=0.029 Score=48.09 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.4
Q ss_pred eeEEeCCCCCChHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~ 267 (455)
.+++.|++|+|||+|+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 288
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.11 E-value=0.035 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 289
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.09 E-value=0.015 Score=56.20 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.+.||+|+||||+++.|+..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44578999999999999999998875
No 290
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.07 E-value=0.011 Score=54.98 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=27.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
.-|.+.|++|||||++++.+|..+++++++
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999999999886
No 291
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.04 E-value=0.019 Score=61.58 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=19.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
...++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999887776553
No 292
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.02 E-value=0.063 Score=52.21 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=31.1
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCC----CCCceeEEeCCCCCChHHHHHHHH
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGK----AWKRGYLLYGPPGTGKSSLIAAMS 266 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~----~~~rgiLL~GppGTGKT~la~aiA 266 (455)
.+|+++...+.+.+.+.+.- +..+..++.... ..++.+++.+|+|+|||..+...+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~ 65 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKG---FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPL 65 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHH
Confidence 35777777776666654421 111111111110 113579999999999998765444
No 293
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.99 E-value=0.031 Score=54.87 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=27.7
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecc
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELS 279 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~ 279 (455)
.++.+++.||+|+|||+++..||..+ +..+..+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34568899999999999999999765 4556555543
No 294
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.99 E-value=0.032 Score=56.85 Aligned_cols=50 Identities=32% Similarity=0.363 Sum_probs=34.6
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHhchhHHhhhCCCCCceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 207 PATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 207 ~~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
..+++++....+.+..+.+ + +.. ...-+++.||+|+||||+.++|+..+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~-l---~~~----------~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRR-L---IKR----------PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHH-H---HTS----------SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHH-H---HHh----------cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4568888777655443332 2 111 122478999999999999999999875
No 295
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.90 E-value=0.013 Score=52.42 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=22.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
.+|+||.|++|+|||+++.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 579999999999999999999874
No 296
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.90 E-value=0.069 Score=49.40 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
.-++|.|++|+|||+|+.++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46899999999999999999753
No 297
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.89 E-value=0.017 Score=54.97 Aligned_cols=25 Identities=44% Similarity=0.717 Sum_probs=22.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-++|.||+|+||||++++|+..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 4458899999999999999999865
No 298
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.87 E-value=0.014 Score=52.56 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=19.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
+.+++.+|+|+|||.++...+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999988777654
No 299
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.85 E-value=0.043 Score=47.12 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.4
Q ss_pred eeEEeCCCCCChHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMS 266 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA 266 (455)
-+++.|+||+|||+|+.++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999996
No 300
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.83 E-value=0.051 Score=59.88 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
++.++|.||.|+|||++.+.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456899999999999999999864
No 301
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.83 E-value=0.033 Score=54.82 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.8
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
.+.-+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35568999999999999999999876
No 302
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.82 E-value=0.033 Score=49.30 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
-.++|.|++|+|||+|+.++.+.-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 303
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.78 E-value=0.017 Score=54.03 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFD 272 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~ 272 (455)
.-+-|.||+|+||||+++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 347799999999999999999988754
No 304
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.77 E-value=0.016 Score=52.41 Aligned_cols=23 Identities=48% Similarity=0.795 Sum_probs=21.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l 269 (455)
-+.|.||+|+|||||++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 305
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.76 E-value=0.034 Score=51.63 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=28.4
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhC---CCCCceeEEeCCCCCChHHHH
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVG---KAWKRGYLLYGPPGTGKSSLI 262 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g---~~~~rgiLL~GppGTGKT~la 262 (455)
.+|+++...+.+.+.+.+.- ...+..++... .-.++.+++.+|+|+|||...
T Consensus 29 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQN---FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTTT---CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 46777777766665554310 01111111100 001357999999999999753
No 306
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.76 E-value=0.018 Score=60.39 Aligned_cols=26 Identities=27% Similarity=0.522 Sum_probs=23.2
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-|+|.|+||+|||++++.+|.+++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999999884
No 307
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.73 E-value=0.0094 Score=57.68 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=25.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC---CceEEeeccccC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN---FDIYDLELSAVH 282 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~---~~~~~l~~~~~~ 282 (455)
.-+.|.||+|+||||+++.++..++ ..+..++..++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3578999999999999999999776 445556655554
No 308
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.71 E-value=0.11 Score=51.11 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=30.8
Q ss_pred CCcccccccHHHHHHHHHHHH-HHH-hchhHHhhhCCCCCceeEEeCCCCCChHHHHH
Q 012846 208 ATFDTLAMEAELKKMIIEDLE-RFV-KRKDYYRRVGKAWKRGYLLYGPPGTGKSSLIA 263 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~-~~~-~~~~~y~~~g~~~~rgiLL~GppGTGKT~la~ 263 (455)
.+|+++...+.+.+.+.+.-- .+. ...+.+..+-...++.+++.+|+|+|||..+.
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 467777777777666654100 000 01111111111123689999999999997554
No 309
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.71 E-value=0.02 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
..-+.+.||+|+|||+++..++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999998765
No 310
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.69 E-value=0.06 Score=60.28 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.6
Q ss_pred CceeEEeCCCCCChHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMS 266 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA 266 (455)
+.-++|.||.|+|||++.+.+|
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999985
No 311
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.67 E-value=0.15 Score=44.78 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..-+++.|++|+|||+|+.++.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999754
No 312
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.67 E-value=0.054 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999865
No 313
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.64 E-value=0.095 Score=46.21 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.9
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|++|+|||+|+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999853
No 314
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.64 E-value=0.035 Score=57.91 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=27.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
++.+++.|+||+||||++..||..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568999999999999999999766 566665554
No 315
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.63 E-value=0.052 Score=60.61 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.0
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHH
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+..++|.||.|+|||++.+.+|.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3345689999999999999999874
No 316
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.61 E-value=0.042 Score=53.92 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
.-+.|.||+|+||||+++.|+..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999999875
No 317
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.59 E-value=0.064 Score=47.28 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+++.|++|+|||+|+.++..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999975
No 318
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.58 E-value=0.023 Score=57.01 Aligned_cols=27 Identities=41% Similarity=0.614 Sum_probs=22.9
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
..+..+++.||+|+||||++++|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 334458999999999999999999865
No 319
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.51 E-value=0.092 Score=46.65 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~ 267 (455)
...+++.|++|+|||+|+.++..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999863
No 320
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.51 E-value=0.012 Score=54.40 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=15.9
Q ss_pred CceeEEeCCCCCChHHHHHHHH-HHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMS-NYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA-~~l~ 270 (455)
+.-+.|.||+|+||||+++.|+ ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4458899999999999999999 7753
No 321
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.50 E-value=0.06 Score=48.01 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~ 267 (455)
...+++.|++|+|||+|+.++.+
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999999975
No 322
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.49 E-value=0.07 Score=47.83 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=19.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+++.|++|+|||+|+..+.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 3589999999999999999975
No 323
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.48 E-value=0.075 Score=47.93 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..++|.|++|+|||+|+.++..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 3589999999999999999975
No 324
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.46 E-value=0.047 Score=47.31 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
-.+++.|++|+|||+|+.++.+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3589999999999999999974
No 325
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.44 E-value=0.032 Score=61.56 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=19.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l 269 (455)
-.++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999887776543
No 326
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.40 E-value=0.039 Score=56.64 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=29.4
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc----CCceEEeec
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL----NFDIYDLEL 278 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l----~~~~~~l~~ 278 (455)
|.+.+.-++|.|+||+|||+++..+|..+ +.++..+++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666668999999999999999987643 556766654
No 327
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.38 E-value=0.056 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999753
No 328
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.34 E-value=0.025 Score=60.01 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=28.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC----CceEEeec
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN----FDIYDLEL 278 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~----~~~~~l~~ 278 (455)
.-|+|.|+||+|||+++++++..++ .+++.++.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 4578999999999999999999986 77777763
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.32 E-value=0.028 Score=54.78 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999876
No 330
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.31 E-value=0.058 Score=47.67 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+++.|++|+|||+|+.++..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4689999999999999999986
No 331
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.31 E-value=0.02 Score=57.00 Aligned_cols=23 Identities=52% Similarity=0.823 Sum_probs=21.0
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l 269 (455)
-+++.||+|+||||+.+++++.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998876
No 332
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.021 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.606 Sum_probs=21.7
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHH
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
....+++.|++|+|||+|+.++.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999864
No 333
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.27 E-value=0.057 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
..++|.||||+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 348999999999999999997654
No 334
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.25 E-value=0.039 Score=56.50 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=29.2
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc----CCceEEeec
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL----NFDIYDLEL 278 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l----~~~~~~l~~ 278 (455)
|.+.+.-++|.|+||+|||+++..+|... +.++..+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666668999999999999999887643 456666654
No 335
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.25 E-value=0.038 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..++|.|++|+|||+|+.++.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 45899999999999999999864
No 336
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.19 E-value=0.027 Score=51.86 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=25.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC---CceEEe
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN---FDIYDL 276 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~---~~~~~l 276 (455)
.-|.|.||+|+||||+++.++..+. .+++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3477899999999999999998874 555544
No 337
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.16 E-value=0.021 Score=50.49 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
..+++.|++|+|||+|+.++.+.-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999997543
No 338
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.16 E-value=0.028 Score=51.71 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=28.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEEeec
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYDLEL 278 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~l~~ 278 (455)
.+-|+|..|||||++++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 578999999999999999998 9999998765
No 339
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.16 E-value=0.017 Score=60.37 Aligned_cols=62 Identities=13% Similarity=0.318 Sum_probs=39.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCC--ceEEeeccc-cC-----------------ChHHHHHHHHhc--CCceEEEE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNF--DIYDLELSA-VH-----------------SNSELRRVLLST--GNRSILVV 302 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~--~~~~l~~~~-~~-----------------~~~~L~~ll~~~--~~~sIlli 302 (455)
+.++++.||+|+||||++++++..+.. .++.++-.. +. ....+..++... .+|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 457999999999999999999988742 344443211 10 011233343332 36888999
Q ss_pred eccc
Q 012846 303 EDID 306 (455)
Q Consensus 303 DeiD 306 (455)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9874
No 340
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.13 E-value=0.051 Score=48.95 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=20.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
...+++.|++|+|||+|+.++...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999864
No 341
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.12 E-value=0.026 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.6
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcC
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~ 270 (455)
-.+|+||.|+|||+++.||+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999998775
No 342
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.11 E-value=0.065 Score=49.45 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=25.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCCceE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNFDIY 274 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~~~~ 274 (455)
.-|.|.||+|+|||++++.+++.++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 45788999999999999999999987543
No 343
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=94.10 E-value=0.027 Score=44.11 Aligned_cols=48 Identities=8% Similarity=-0.139 Sum_probs=35.5
Q ss_pred EeCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHH
Q 012846 379 YMSYCTPCGFDTLAANYLGITDHPLIYEIKEIMQNV-RVTPADVGEQLL 426 (455)
Q Consensus 379 ~~~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 426 (455)
+-++|+.++|.+|++.++.........+++.+++.+ ++|+|||.++|.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 457899999999999999865432233455555544 699999999875
No 344
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.09 E-value=0.061 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.0
Q ss_pred eeEEeCCCCCChHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~ 267 (455)
-++|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 489999999999999999874
No 345
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.09 E-value=0.031 Score=54.57 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34477999999999999999999874
No 346
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.07 E-value=0.045 Score=55.96 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=29.1
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHc----CCceEEeeccc
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYL----NFDIYDLELSA 280 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l----~~~~~~l~~~~ 280 (455)
.++.+++.|++|+|||+++..+|..+ |..+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 35678899999999999999998765 66676666543
No 347
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.12 Score=45.27 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~ 267 (455)
...+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999984
No 348
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.00 E-value=0.038 Score=51.43 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=21.9
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc-------CCceEEe
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL-------NFDIYDL 276 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l-------~~~~~~l 276 (455)
-|.|.||+|+||||+++.+++.+ +.+++..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 47888999999999999999887 5666544
No 349
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.99 E-value=0.065 Score=51.90 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=27.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELS 279 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~ 279 (455)
+.-+++.||+|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4567889999999999999999776 5666665554
No 350
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.99 E-value=0.028 Score=54.67 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
.-+.|.||+|+|||||++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4478999999999999999999876
No 351
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.98 E-value=0.04 Score=51.23 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
.-+.+.|++|+||||+++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999994
No 352
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.94 E-value=0.013 Score=55.44 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
.-|.|.|++|+||||+++.|++.++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3578999999999999999999983
No 353
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.94 E-value=0.028 Score=48.04 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.93 E-value=0.034 Score=49.40 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=25.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc---CCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~ 277 (455)
+.+.+.|++|+|||+++..++..+ ++.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 358899999999999999999875 45555554
No 355
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.92 E-value=0.054 Score=48.11 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+++.|++|+|||+|+.++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999999963
No 356
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.91 E-value=0.045 Score=48.56 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
No 357
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.83 E-value=0.15 Score=55.87 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
+..++|.||.|+|||++.+.+|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456899999999999999999864
No 358
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.83 E-value=0.018 Score=59.43 Aligned_cols=27 Identities=30% Similarity=0.576 Sum_probs=23.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
+.-|+|.|.||+|||++++.+|..++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 446899999999999999999998753
No 359
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.81 E-value=0.033 Score=47.32 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.9
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999864
No 360
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.044 Score=60.51 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=17.9
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
-+|+.||||||||+++..+...
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999887766543
No 361
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.74 E-value=0.033 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.3
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
-+.|.||+|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 362
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.71 E-value=0.15 Score=50.72 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=31.2
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCC---CCCceeEEeCCCCCChHHHHH
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGK---AWKRGYLLYGPPGTGKSSLIA 263 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~---~~~rgiLL~GppGTGKT~la~ 263 (455)
.+|+++...+.+.+.|.+.- +..+..++.... -.++.+++.+|+|+|||..+.
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~ 92 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYG---FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHH
Confidence 47999888887777664421 011111111100 113569999999999996544
No 363
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.70 E-value=0.032 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
.-+.|.||.|+|||||+++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999975
No 364
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.68 E-value=0.054 Score=55.60 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeecc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLELS 279 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~~ 279 (455)
|...+.-+++.|+||+|||+++..+|... +.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 45555568999999999999999887654 5667666543
No 365
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.66 E-value=0.06 Score=53.20 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=29.0
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
|...+.-++|.|+||+|||+++..+|..+ +.++..+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 55555668999999999999999998663 566655543
No 366
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.58 E-value=0.033 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l 269 (455)
-+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 367
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.51 E-value=0.037 Score=59.09 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+-+++.||||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999988876554
No 368
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.45 E-value=0.16 Score=59.11 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=23.8
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.+.-+.+.||+|+|||||+++|.+...
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 4455689999999999999999998764
No 369
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.41 E-value=0.046 Score=56.86 Aligned_cols=39 Identities=10% Similarity=-0.027 Sum_probs=29.4
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc----CCceEEeecc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL----NFDIYDLELS 279 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l----~~~~~~l~~~ 279 (455)
|.+.+.-++|.|+||+|||+++..+|..+ +.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 45555568999999999999999998654 4566666543
No 370
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.41 E-value=0.046 Score=53.77 Aligned_cols=26 Identities=19% Similarity=0.574 Sum_probs=23.2
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+..+++.||+|+|||||+++|+....
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45799999999999999999998874
No 371
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.40 E-value=0.15 Score=50.65 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=29.7
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhC---CCCCceeEEeCCCCCChHHHH
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVG---KAWKRGYLLYGPPGTGKSSLI 262 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g---~~~~rgiLL~GppGTGKT~la 262 (455)
.+|+++...+.+.+.+.+.- ...+..++... .-.++.+++.+|+|+|||..+
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 94 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHH
T ss_pred cCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHH
Confidence 46888888777776664310 01111111100 011356999999999999764
No 372
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.39 E-value=0.035 Score=51.84 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||.|+|||||.++|+..+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 44588999999999999999997664
No 373
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.39 E-value=0.2 Score=51.83 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=38.9
Q ss_pred eEEeCCCCCChHHH-HHHHHHHcCCceEEeeccccCChHHHHHH---HHhcC--CceEEEEecccc
Q 012846 248 YLLYGPPGTGKSSL-IAAMSNYLNFDIYDLELSAVHSNSELRRV---LLSTG--NRSILVVEDIDC 307 (455)
Q Consensus 248 iLL~GppGTGKT~l-a~aiA~~l~~~~~~l~~~~~~~~~~L~~l---l~~~~--~~sIlliDeiD~ 307 (455)
.++.|++|||||+| ...|++..+.+++.+=+.--....++.++ +.... .++++|.--.|.
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~ 230 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASE 230 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTS
T ss_pred EEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCC
Confidence 89999999999999 67999999888654322211223333333 33322 567887766654
No 374
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.38 E-value=0.27 Score=53.28 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.1
Q ss_pred CceeEEeCCCCCChHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLI 262 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la 262 (455)
.+.+++.||+|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 567999999999999876
No 375
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.32 E-value=0.036 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||+++|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999999865
No 376
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.32 E-value=0.14 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|++.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45999999999999999988763
No 377
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.28 E-value=0.21 Score=50.22 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=21.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+++.||+|+|||+|++.||+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4458999999999999999998865
No 378
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.26 E-value=0.13 Score=52.47 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=26.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
+..+++.||+|+|||+++..+|..+ +..+..+++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 4568888999999999999999876 445554443
No 379
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.24 E-value=0.056 Score=53.85 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.2
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+..++|.||+|+|||||+++|+....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999998764
No 380
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.23 E-value=0.047 Score=47.25 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999753
No 381
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.21 E-value=0.044 Score=47.39 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.4
Q ss_pred eeEEeCCCCCChHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~ 267 (455)
-+.|.|+||+|||+|+.++++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999985
No 382
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.21 E-value=0.049 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 383
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.18 E-value=0.16 Score=50.31 Aligned_cols=24 Identities=42% Similarity=0.629 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
.-+.|.|+||+|||||..+++..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999754
No 384
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.18 E-value=0.032 Score=51.68 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||.|+|||||.++|+..+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999997664
No 385
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.17 E-value=0.043 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=21.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
.-+.|.||.|+|||||.++|+..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999999998763
No 386
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.17 E-value=0.068 Score=52.98 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=24.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc---CCceEEe
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDL 276 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l 276 (455)
.-+.|.|+||+|||+++.+++..+ +..+..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 458899999999999999998875 4444443
No 387
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.17 E-value=0.039 Score=54.91 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=24.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFD 272 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~ 272 (455)
..-+.|.||+|+|||||++.|+..+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999987653
No 388
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.11 E-value=0.05 Score=47.15 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999764
No 389
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.08 E-value=0.044 Score=46.92 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 390
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.08 E-value=0.043 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.4
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcC
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~ 270 (455)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998763
No 391
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.07 E-value=0.17 Score=57.31 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.7
Q ss_pred CceeEEeCCCCCChHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMS 266 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA 266 (455)
++.++|.||.|+|||++.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4678999999999999999984
No 392
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.06 E-value=0.046 Score=47.23 Aligned_cols=23 Identities=43% Similarity=0.509 Sum_probs=20.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l 269 (455)
-.+++||.|+|||++..||.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999998655
No 393
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.97 E-value=0.034 Score=51.74 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||.|+|||||.++|+..+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45688999999999999999998763
No 394
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.96 E-value=0.19 Score=52.13 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=39.4
Q ss_pred eEEeCCCCCChHHH-HHHHHHHcCCceEEeeccccCChHHHHHHHHhcC-----CceEEEEecccc
Q 012846 248 YLLYGPPGTGKSSL-IAAMSNYLNFDIYDLELSAVHSNSELRRVLLSTG-----NRSILVVEDIDC 307 (455)
Q Consensus 248 iLL~GppGTGKT~l-a~aiA~~l~~~~~~l~~~~~~~~~~L~~ll~~~~-----~~sIlliDeiD~ 307 (455)
.++.|++|||||+| ...|++..+.+++.+=+.--....++.++..... .++++|.--.|.
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~ 231 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADS 231 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTS
T ss_pred EEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCC
Confidence 89999999999999 6799998887754432222223345555544332 467777766654
No 395
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.94 E-value=0.42 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.8
Q ss_pred eeEEeCCCCCChHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~ 267 (455)
-+.+.|++|+|||+|+.++.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 688999999999999999987
No 396
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.92 E-value=0.1 Score=47.54 Aligned_cols=29 Identities=28% Similarity=0.582 Sum_probs=24.1
Q ss_pred eEEeCCCCCChHHHHHHHHHHc--CCceEEe
Q 012846 248 YLLYGPPGTGKSSLIAAMSNYL--NFDIYDL 276 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~l--~~~~~~l 276 (455)
|.|.|+.|+||||.++.+++.+ +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 6788999999999999999988 4555544
No 397
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.92 E-value=0.046 Score=51.96 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999998764
No 398
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.91 E-value=0.043 Score=48.35 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=19.3
Q ss_pred eeEEeCCCCCChHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~ 267 (455)
-++|.|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999976
No 399
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.91 E-value=0.067 Score=55.84 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=23.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~ 271 (455)
..|.|.|++|+||||++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999999985
No 400
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.88 E-value=0.044 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||.++|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4458899999999999999999765
No 401
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.81 E-value=0.16 Score=48.33 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.5
Q ss_pred eeEEeCCCCCChHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~ 267 (455)
-+.|.|+||+|||+|..++.+
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 588999999999999999986
No 402
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.80 E-value=0.051 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
.-|.|.||+|+|||++++.++..++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999998773
No 403
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.77 E-value=0.065 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~ 267 (455)
...+++.|++|+|||+|+.++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999975
No 404
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.77 E-value=0.043 Score=50.54 Aligned_cols=26 Identities=35% Similarity=0.622 Sum_probs=22.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||.|+|||||.++|+..+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999998663
No 405
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.75 E-value=0.049 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
.-++|.|++|+|||+|+.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 406
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.74 E-value=0.06 Score=46.17 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+++.|++|+|||+|+.++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999975
No 407
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.73 E-value=0.06 Score=51.30 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.5
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
+.-+.|.||.|+|||||+++|+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 445889999999999999999986
No 408
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.73 E-value=0.06 Score=47.40 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 409
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.72 E-value=0.05 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||+++|+..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4568899999999999999999765
No 410
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.69 E-value=0.051 Score=56.90 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=24.5
Q ss_pred CCCCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 241 GKAWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 241 g~~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
|.+.+..++|.||||+|||+|++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45556678999999999999999998754
No 411
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.68 E-value=0.054 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999853
No 412
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.68 E-value=0.045 Score=51.80 Aligned_cols=25 Identities=40% Similarity=0.743 Sum_probs=21.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||.++|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999998765
No 413
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.68 E-value=0.18 Score=52.35 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=39.4
Q ss_pred eeEEeCCCCCChHHH-HHHHHHHcCCceEEeeccccCChHHHHHHH---HhcC--CceEEEEecccc
Q 012846 247 GYLLYGPPGTGKSSL-IAAMSNYLNFDIYDLELSAVHSNSELRRVL---LSTG--NRSILVVEDIDC 307 (455)
Q Consensus 247 giLL~GppGTGKT~l-a~aiA~~l~~~~~~l~~~~~~~~~~L~~ll---~~~~--~~sIlliDeiD~ 307 (455)
-.++.|++|||||+| ...|++..+.+++.+=+.--....++.++. .... .++++|.--.|.
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~ 243 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASD 243 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTS
T ss_pred EEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCC
Confidence 389999999999999 679999988886543222212233444333 3322 567887766654
No 414
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.64 E-value=0.053 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 44588999999999999999998764
No 415
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.62 E-value=0.04 Score=52.02 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||.|+|||||.++|+..+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34588999999999999999998764
No 416
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.61 E-value=0.055 Score=50.94 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
+.-+.|.||.|+|||||+++|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999986
No 417
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.55 E-value=0.054 Score=51.75 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44588999999999999999997653
No 418
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.54 E-value=0.049 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||+++|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4458899999999999999999765
No 419
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.45 E-value=0.56 Score=47.87 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=30.8
Q ss_pred CCcccccccHHHHHHHHHHHHHHHh----chhHHhhhCCCCCceeEEeCCCCCChHHH
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVK----RKDYYRRVGKAWKRGYLLYGPPGTGKSSL 261 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~----~~~~y~~~g~~~~rgiLL~GppGTGKT~l 261 (455)
.+|+++...+.+.+.|.+.- |.. +...+..+-...++.+|+.||+|+|||..
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g--~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMG--FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTT--CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 46888888887776664310 000 11111111111246899999999999975
No 420
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.41 E-value=0.059 Score=51.06 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=21.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||.++|+..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4458899999999999999999765
No 421
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.41 E-value=0.046 Score=57.71 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
..+.|.||+|+||||++++||..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4588999999999999999999885
No 422
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.40 E-value=0.052 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||+++|+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458899999999999999999765
No 423
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.38 E-value=0.052 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.-+.|.||.|+|||||.++|+..+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34588999999999999999998764
No 424
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.38 E-value=0.065 Score=46.34 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+++.|++|+|||+|+.++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999864
No 425
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.36 E-value=0.062 Score=46.93 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999754
No 426
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.34 E-value=0.15 Score=48.00 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=19.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+.|.|+||+|||+|+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999754
No 427
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.33 E-value=0.063 Score=47.17 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 428
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.33 E-value=0.07 Score=47.05 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~ 267 (455)
...+++.|++|+|||+|+.++.+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45699999999999999999974
No 429
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.33 E-value=0.071 Score=49.46 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=24.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcCC----ceEE
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLNF----DIYD 275 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~~----~~~~ 275 (455)
.-|.|.|++|+|||++++.+++.++. +++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 34778899999999999999987654 5554
No 430
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.32 E-value=0.066 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.1
Q ss_pred eeEEeCCCCCChHHHHHHHHHHc
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l 269 (455)
-|.|.|++|+|||+.++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999887
No 431
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.31 E-value=0.11 Score=48.36 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=25.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc--CCceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL--NFDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l--~~~~~~l~ 277 (455)
..+++.|.+|+|||+++..+|..+ +..+..++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 347889999999999999999776 55555554
No 432
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.29 E-value=0.061 Score=51.18 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||.++|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4458899999999999999998765
No 433
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.28 E-value=0.067 Score=48.51 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
+.+++.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 434
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.27 E-value=0.06 Score=56.33 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.7
Q ss_pred CCCCceeEEeCCCCCChHHHHHHH
Q 012846 242 KAWKRGYLLYGPPGTGKSSLIAAM 265 (455)
Q Consensus 242 ~~~~rgiLL~GppGTGKT~la~ai 265 (455)
.+.+..++|.||+|+|||+|++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 455667999999999999999994
No 435
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.26 E-value=0.036 Score=49.24 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcC
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~ 270 (455)
.+.|.||+|+|||+|++.|+..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999998874
No 436
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.25 E-value=0.051 Score=52.18 Aligned_cols=25 Identities=32% Similarity=0.716 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||.++|+..+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3458899999999999999999765
No 437
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.24 E-value=0.1 Score=53.42 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=19.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
.+-.++.|+||||||+++..+++.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 345689999999999999888753
No 438
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.22 E-value=0.076 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999763
No 439
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.21 E-value=0.058 Score=51.40 Aligned_cols=25 Identities=36% Similarity=0.681 Sum_probs=21.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||+++|+..+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458899999999999999999765
No 440
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.19 E-value=0.076 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 441
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.15 E-value=0.074 Score=46.29 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999753
No 442
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.09 E-value=0.059 Score=50.92 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||.++|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999865
No 443
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.05 E-value=0.092 Score=51.76 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.2
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
.-+.|.||||+|||||+++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 347899999999999999999765
No 444
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.05 E-value=0.13 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.9
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
-+.|.||+|+|||||+++|++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4679999999999999999984
No 445
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.04 E-value=0.11 Score=51.60 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=25.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIY 274 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~ 274 (455)
+.-+.|.||+|+|||+|++.|++....+..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 344889999999999999999999876543
No 446
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.99 E-value=0.092 Score=51.27 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCce
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDI 273 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~ 273 (455)
.+|+||.|++|+|||+++.++... |..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 578999999999999999999875 4433
No 447
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.98 E-value=0.071 Score=53.11 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+|||||.++||...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999865
No 448
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.96 E-value=0.46 Score=48.05 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=29.7
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhchhHHhhhCC---CCCceeEEeCCCCCChHHH
Q 012846 208 ATFDTLAMEAELKKMIIEDLERFVKRKDYYRRVGK---AWKRGYLLYGPPGTGKSSL 261 (455)
Q Consensus 208 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~y~~~g~---~~~rgiLL~GppGTGKT~l 261 (455)
.+|+++...+.+.+.|.+.- ...+.-++...+ -.++.+++.+|+|+|||..
T Consensus 56 ~~f~~~~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKSG---YKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 46888887777766664310 011111111111 1246799999999999973
No 449
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.96 E-value=0.085 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999754
No 450
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.95 E-value=0.086 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
-+++.|++|+|||+|+..+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999999764
No 451
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.94 E-value=0.067 Score=52.21 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=23.3
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCceE
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDIY 274 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~~ 274 (455)
.+|+||.|++|+|||++|.++.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 57899999999999999988765 344444
No 452
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.93 E-value=0.071 Score=46.56 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
.-+.|.|+||+|||+|+.+++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999864
No 453
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.93 E-value=0.083 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+|||||.++||...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999865
No 454
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.88 E-value=0.076 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.1
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
.-+++.|+||+|||+|+.++.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999986
No 455
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.87 E-value=0.087 Score=46.90 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 456
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.85 E-value=0.067 Score=46.42 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
-.+++.|++|+|||+|+..+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 457
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.83 E-value=0.085 Score=52.57 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+|||||.++||...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3457899999999999999999765
No 458
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.82 E-value=0.068 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.5
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999753
No 459
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.81 E-value=0.086 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+|||||.++||...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3457899999999999999999765
No 460
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.79 E-value=0.09 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=19.8
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
.+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999753
No 461
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.77 E-value=0.077 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+|||||.++||...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999765
No 462
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.76 E-value=0.094 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.6
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999888764
No 463
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.74 E-value=0.088 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.7
Q ss_pred CceeEEeCCCCCChHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMS 266 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA 266 (455)
+..+++.|++|+|||+|+.++.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4569999999999999999886
No 464
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.72 E-value=0.077 Score=50.48 Aligned_cols=25 Identities=36% Similarity=0.728 Sum_probs=22.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||.++|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458899999999999999999865
No 465
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.71 E-value=0.09 Score=52.78 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.9
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+|||||.++||...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3457899999999999999999866
No 466
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.68 E-value=0.094 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 467
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.64 E-value=0.19 Score=48.55 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=26.1
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
+..+.+.||+|+|||+++..+|..+ +..+..+++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4567888999999999999999765 455555543
No 468
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.62 E-value=0.3 Score=50.48 Aligned_cols=58 Identities=28% Similarity=0.304 Sum_probs=37.5
Q ss_pred eEEeCCCCCChHHH-HHHHHHHcCCceEEe--eccccCChHHHHHH---HHhc--CCceEEEEecccc
Q 012846 248 YLLYGPPGTGKSSL-IAAMSNYLNFDIYDL--ELSAVHSNSELRRV---LLST--GNRSILVVEDIDC 307 (455)
Q Consensus 248 iLL~GppGTGKT~l-a~aiA~~l~~~~~~l--~~~~~~~~~~L~~l---l~~~--~~~sIlliDeiD~ 307 (455)
.++.|++|||||++ ...|++..+.+++.+ -+++ ...++.++ |... -.++|+|.--.|.
T Consensus 165 ~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGe--R~~ev~e~~~~l~~~g~m~~tvvV~atad~ 230 (513)
T 3oaa_A 165 ELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQ--KASTISNVVRKLEEHGALANTIVVVATASE 230 (513)
T ss_dssp CEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESC--CHHHHHHHHHHHHHHSCSTTEEEEEECTTS
T ss_pred EEeecCCCCCcchHHHHHHHhhccCCceEEEEEecC--ChHHHHHHHHHHhhcCcccceEEEEECCCC
Confidence 89999999999999 578998877776443 2222 22333333 3332 2567777766654
No 469
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.62 E-value=0.095 Score=46.90 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999853
No 470
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.59 E-value=0.082 Score=46.38 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=20.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..-+++.|++|+|||+|+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999754
No 471
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.58 E-value=0.086 Score=45.83 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+++.|++|+|||+|+.++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4589999999999999999984
No 472
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.56 E-value=0.085 Score=47.13 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999763
No 473
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.51 E-value=0.047 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.2
Q ss_pred CceeEEeCCCCCChHHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~ 268 (455)
+.-+.|.|++|+|||+|++++++.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999998643
No 474
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.45 E-value=0.16 Score=51.93 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=24.7
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHcCCce
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYLNFDI 273 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l~~~~ 273 (455)
+.-+.|.||+|+|||+|++.|++....+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 33488999999999999999999986554
No 475
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.45 E-value=0.34 Score=50.26 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=35.5
Q ss_pred eEEeCCCCCChHHH-HHHHHHHcC--------CceEEe--eccccCChHHHHHH---HHhcC--CceEEEEecccc
Q 012846 248 YLLYGPPGTGKSSL-IAAMSNYLN--------FDIYDL--ELSAVHSNSELRRV---LLSTG--NRSILVVEDIDC 307 (455)
Q Consensus 248 iLL~GppGTGKT~l-a~aiA~~l~--------~~~~~l--~~~~~~~~~~L~~l---l~~~~--~~sIlliDeiD~ 307 (455)
.++.|++|||||+| ...|++..+ .+++.+ -+++ ...++.++ +.... .++++|.--.|.
T Consensus 165 ~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGe--R~~Ev~~~~~~~~~~g~m~~tvvV~atad~ 238 (510)
T 2ck3_A 165 ELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQ--KRSTVAQLVKRLTDADAMKYTIVVSATASD 238 (510)
T ss_dssp CEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESC--CHHHHHHHHHHHHHTTCGGGEEEEEECTTS
T ss_pred EEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCC--CcHHHHHHHHHHHhcCCcccceEEEECCCC
Confidence 89999999999999 667877665 444332 2332 22333333 33322 567777766654
No 476
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=91.44 E-value=0.22 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.6
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
--++|.|.||+|||+|+.++.+
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999999974
No 477
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.41 E-value=0.092 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHc
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l 269 (455)
.-+++.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468888999999999999999875
No 478
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.40 E-value=0.089 Score=52.69 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+|||||.++||...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3457899999999999999999865
No 479
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.38 E-value=0.24 Score=47.94 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.1
Q ss_pred CCce-eEEeCCCCCChHHHHHHHHH
Q 012846 244 WKRG-YLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 244 ~~rg-iLL~GppGTGKT~la~aiA~ 267 (455)
.+.| +.+.|+||+|||+|+.++.+
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3445 67999999999999999975
No 480
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.36 E-value=0.08 Score=48.01 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.2
Q ss_pred ceeEEeCCCCCChHHHHHH-HHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAA-MSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~a-iA~~ 268 (455)
..+++.|++|+|||+|+.+ +.+.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999999 4443
No 481
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.34 E-value=0.081 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+.|.|+||+|||+|+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999754
No 482
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.31 E-value=0.065 Score=46.73 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=9.8
Q ss_pred ceeEEeCCCCCChHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~ 267 (455)
..+++.|++|+|||+|+.++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 483
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.21 E-value=0.095 Score=53.98 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 244 WKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 244 ~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
.+.-+.|.||.|+|||||++.|++..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34458999999999999999999865
No 484
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.20 E-value=0.11 Score=52.85 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.4
Q ss_pred eEEeCCCCCChHHHHHHHHHH
Q 012846 248 YLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 248 iLL~GppGTGKT~la~aiA~~ 268 (455)
+.|.||+|+|||||+++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999865
No 485
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.19 E-value=0.11 Score=54.80 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=25.9
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC---CceEEee
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN---FDIYDLE 277 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~---~~~~~l~ 277 (455)
.-++|.|+||+|||++++.++..++ .+++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 4588999999999999999998774 4555554
No 486
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.18 E-value=0.1 Score=45.67 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.4
Q ss_pred CceeEEeCCCCCChHHHHHHHHH
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSN 267 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~ 267 (455)
...+++.|++|+|||+|+.++.+
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35689999999999999999975
No 487
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.15 E-value=0.11 Score=47.90 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=22.9
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCCceEE
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNFDIYD 275 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~~~~~ 275 (455)
-+.|.||.|+||||+++.|+.. +..+..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 3779999999999999999987 444443
No 488
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.12 E-value=0.086 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.0
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||.|+|||||.++|+..+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4458899999999999999999865
No 489
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.09 E-value=0.075 Score=52.71 Aligned_cols=25 Identities=20% Similarity=0.620 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+|||||.++||...
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3457899999999999999999865
No 490
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.08 E-value=0.1 Score=47.11 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+..+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 491
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.98 E-value=0.12 Score=51.43 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=22.0
Q ss_pred ceeEEeCCCCCChHHHHHHHHHHcC
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNYLN 270 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~l~ 270 (455)
..+.|.||+|+|||||+++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4688999999999999999997654
No 492
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.97 E-value=0.23 Score=49.55 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=26.6
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc---CCceEEeec
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL---NFDIYDLEL 278 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l---~~~~~~l~~ 278 (455)
...+++.||+|+|||++++.++..+ +..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4568999999999999999997643 556666654
No 493
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.97 E-value=0.18 Score=58.76 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=22.7
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHc
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+++.-+-+.||+|+|||||+++|....
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 334558899999999999999998765
No 494
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.92 E-value=0.12 Score=46.93 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=21.7
Q ss_pred eeEEeCCCCCChHHHHHHHHHHcCC
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNYLNF 271 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~l~~ 271 (455)
-.+|+||.|+|||++..||.-.+..
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4689999999999999999876654
No 495
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.87 E-value=0.11 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999753
No 496
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.73 E-value=0.2 Score=45.70 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=28.9
Q ss_pred CCCceeEEeCCCCCChHHHHHHHHHHcCCc-eEEeeccc
Q 012846 243 AWKRGYLLYGPPGTGKSSLIAAMSNYLNFD-IYDLELSA 280 (455)
Q Consensus 243 ~~~rgiLL~GppGTGKT~la~aiA~~l~~~-~~~l~~~~ 280 (455)
.++.-|++.|.||+||++++..+.+.++.. +..+.+++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 456679999999999999999999877643 33444444
No 497
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.72 E-value=0.12 Score=45.62 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999865
No 498
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.71 E-value=0.13 Score=45.71 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.7
Q ss_pred eeEEeCCCCCChHHHHHHHHHH
Q 012846 247 GYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 247 giLL~GppGTGKT~la~aiA~~ 268 (455)
-++|.|+||+|||+|+..+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999853
No 499
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.60 E-value=0.12 Score=46.32 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCChHHHHHHHHHH
Q 012846 246 RGYLLYGPPGTGKSSLIAAMSNY 268 (455)
Q Consensus 246 rgiLL~GppGTGKT~la~aiA~~ 268 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 500
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.59 E-value=0.12 Score=52.13 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCChHHHHHHHHHHc
Q 012846 245 KRGYLLYGPPGTGKSSLIAAMSNYL 269 (455)
Q Consensus 245 ~rgiLL~GppGTGKT~la~aiA~~l 269 (455)
+.-+.|.||+|+|||||.++||...
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4458899999999999999999754
Done!