BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012850
         (455 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
           Resolution
 pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
           Resolution, Dmso Complex
          Length = 165

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 147 HNNTSRKKAVFCHKFPNHNFTLEALWPGLF 176
           HN T   K+++  +FP+ NFTL+ + PG+ 
Sbjct: 70  HNGTG-GKSIYGSRFPDENFTLKHVGPGVL 98


>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
 pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
 pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
 pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
 pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
 pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
 pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
           Sulfonyl]benzamide
 pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
 pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
           5-Methyl-1,2-Oxazol-3-Amine
 pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
 pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
 pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
 pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
 pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
 pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
          Length = 166

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 147 HNNTSRKKAVFCHKFPNHNFTLEALWPGLF 176
           HN T   K+++  +FP+ NFTL+ + PG+ 
Sbjct: 71  HNGTG-GKSIYGSRFPDENFTLKHVGPGVL 99


>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
           Cyclosporin A
 pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
           Cyclosporin A
          Length = 165

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 147 HNNTSRKKAVFCHKFPNHNFTLEALWPGLF 176
           HN T   K+++  +FP+ NFTL+ + PG+ 
Sbjct: 70  HNGTG-GKSIYGSRFPDENFTLKHVGPGVL 98


>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
           Resolution At Room Temperature
          Length = 164

 Score = 30.0 bits (66), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 147 HNNTSRKKAVFCHKFPNHNFTLEALWPGLF 176
           HN T   K+++  +FP+ NFTL+ + PG+ 
Sbjct: 69  HNGTG-GKSIYGSRFPDENFTLKHVGPGVL 97


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,851,366
Number of Sequences: 62578
Number of extensions: 493120
Number of successful extensions: 997
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 6
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)