BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012850
         (455 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5SUA5|MYO1G_MOUSE Unconventional myosin-Ig OS=Mus musculus GN=Myo1g PE=2 SV=1
          Length = 1024

 Score = 34.7 bits (78), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 251 WRSKAQKLKMVQPYDIFLSSPHVSASGII-GAAMTASIGDNSVRSPVENDSDGSTGFHLH 309
           WR++ Q +K + P D+      V+A G + G            R  + +D+D  T  HL 
Sbjct: 801 WRAR-QLVKNIPPSDMIQIKAKVAAMGALQGLRQDWGCQRAWARDYLSSDTDNPTASHLF 859

Query: 310 AADIKSSFSADIFGSVAFTAQ 330
           A  +K+    D FGSV F++ 
Sbjct: 860 AEQLKALREKDGFGSVLFSSH 880


>sp|Q9FYF4|FB77_ARATH Putative F-box protein At1g67390 OS=Arabidopsis thaliana
           GN=At1g67390 PE=4 SV=1
          Length = 479

 Score = 33.9 bits (76), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 79  FQFSGDWFATLLGQFNVLKFVSSLKQGELSKSRCLHALRDKSLYALGFCSEL--LFTDDD 136
           F  SGD  A+ L +   LK V      +++ SR +H LRD  +   G   EL  LF D++
Sbjct: 325 FVVSGD--ASYLQKLKSLKVVV-----DVTNSREVHMLRDILVAWNGVLEELHILFKDNN 377

Query: 137 TLLLSYDSYGH-NNTSRKKAVFCHKFPNHNFTLEALW 172
                 DS      T +KK    + FPN +F +E +W
Sbjct: 378 VPNSKEDSESSIGGTQKKKWEEANLFPNADFRVEVMW 414


>sp|Q58322|Y912_METJA Uncharacterized protein MJ0912 OS=Methanocaldococcus jannaschii
           (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
           100440) GN=MJ0912 PE=4 SV=1
          Length = 243

 Score = 32.3 bits (72), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 87  ATLLGQFNVLKFVSSLKQGELSKSRCLHALRDKSLYALGFCSELLFTDDDTLLLSYDSYG 146
             L+   N L  V +   G L K   L         A+ +  +++  ++   L S     
Sbjct: 51  VELIRDLNCLSVVGNHDYGVLGKES-LDYFNKYGAIAILWTKKVIKNENLKFLDSLPLII 109

Query: 147 HNNTSRKKAVFCHKFPNHNFTLEALWPGLFVDKCGNYWDVPFSMAADLASVASDSGPSYH 206
             N   KK +F H  P H    E L+P  +VD   NY D+ F   + +  V S+ G   +
Sbjct: 110 EENIKGKKVIFSHANPKHPEIWEYLFPD-YVDDVFNYGDLIFVGHSHIPFVNSEEG---N 165

Query: 207 LTMH 210
           L +H
Sbjct: 166 LLLH 169


>sp|Q5XH73|CN6LB_XENLA CCR4-NOT transcription complex subunit 6-like-B OS=Xenopus laevis
           GN=cnot6l-b PE=2 SV=1
          Length = 550

 Score = 32.3 bits (72), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 18/120 (15%)

Query: 186 VPFSMAADLASVASDSGPSYHLT-------------MHHNSGLPTQFEGDENSSAVPASL 232
           +PF + ADL S+  DSG   +LT             + +N  L T F  +  +      +
Sbjct: 398 IPFVLCADLNSLP-DSGVVEYLTNGGVADNHKDFKELRYNECL-TNFSCNGKNGTPDGRI 455

Query: 233 LPGFSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSV 292
             GF L++A  Y+ N+  + +     K V  Y IF S  H+   G++G      + DN++
Sbjct: 456 THGFQLRSA--YENNLMPYTNYTFDFKGVIDY-IFYSKTHIDVLGVLGPLDPQWMMDNNI 512


>sp|Q6IR85|CN6LA_XENLA CCR4-NOT transcription complex subunit 6-like-A OS=Xenopus laevis
           GN=cnot6l-a PE=2 SV=1
          Length = 550

 Score = 32.0 bits (71), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 18/120 (15%)

Query: 186 VPFSMAADLASVASDSGPSYHLT-------------MHHNSGLPTQFEGDENSSAVPASL 232
           +PF + ADL S+  DSG   +LT             + +N  L T F  +  +      +
Sbjct: 398 IPFVLCADLNSLL-DSGVVEYLTNGGVADNHKDFKELRYNECL-TNFNCNGKNGTPDGRI 455

Query: 233 LPGFSLKNAVAYKKNVDIWRSKAQKLKMVQPYDIFLSSPHVSASGIIGAAMTASIGDNSV 292
             GF L++A  Y+ N+  + +     K V  Y IF S  H+   GI+G      + DN++
Sbjct: 456 THGFQLRSA--YENNLMPYTNYTFDFKGVIDY-IFYSKTHMDVLGILGPLDPQWMMDNNI 512


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,506,626
Number of Sequences: 539616
Number of extensions: 6762650
Number of successful extensions: 13906
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 13905
Number of HSP's gapped (non-prelim): 8
length of query: 455
length of database: 191,569,459
effective HSP length: 121
effective length of query: 334
effective length of database: 126,275,923
effective search space: 42176158282
effective search space used: 42176158282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)