Query 012850
Match_columns 455
No_of_seqs 47 out of 49
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 17:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x55_A Coagulase/fibrinolysin; 11.3 2.4E+02 0.0081 27.6 4.8 85 121-208 174-293 (293)
2 3oss_C Type 2 secretion system 9.7 2.5E+02 0.0086 21.9 3.4 27 161-187 39-66 (68)
3 3ft1_A PHL P 3 allergen; beta- 6.2 2.6E+02 0.0089 23.3 2.2 11 393-403 61-71 (100)
4 1i78_A Protease VII; integral 5.6 7.9E+02 0.027 23.9 5.7 40 121-161 178-225 (297)
5 2jnz_A PHL P 3 allergen; timot 5.1 3.5E+02 0.012 22.9 2.4 12 392-403 71-82 (108)
6 1y0n_A Hypothetical UPF0270 pr 4.9 3.1E+02 0.011 22.2 1.8 28 421-448 30-65 (78)
7 2jmm_A Outer membrane protein 4.8 6.8E+02 0.023 20.9 4.1 24 122-145 106-133 (156)
8 1qjp_A Outer membrane protein 4.4 6.8E+02 0.023 20.5 3.7 6 202-207 165-170 (171)
9 2rh2_A Dihydrofolate reductase 3.8 4.1E+02 0.014 20.2 1.6 12 433-444 24-35 (62)
10 2lc0_A Putative uncharacterize 3.7 4.1E+02 0.014 22.9 1.8 24 392-417 99-122 (132)
No 1
>2x55_A Coagulase/fibrinolysin; transmembrane, aspartyl protease, cell outer membrane, OMPT protease, hydrolase; HET: C8E; 1.85A {Yersinia pestis} PDB: 2x56_A* 2x4m_A*
Probab=11.30 E-value=2.4e+02 Score=27.56 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=44.1
Q ss_pred ccccceeeeeeccCCceEEEEe------eecCCCcc-ccceEEEEeec-----------------CCceEEEEeecCcee
Q 012850 121 LYALGFCSELLFTDDDTLLLSY------DSYGHNNT-SRKKAVFCHKF-----------------PNHNFTLEALWPGLF 176 (455)
Q Consensus 121 lyalG~~s~~~l~~~ttL~~sl------e~~~~~~~-~R~k~~l~hkl-----------------p~H~Lt~Eas~rerf 176 (455)
+.-+|+..+..+. +..|.+++ ...+..++ .|. +.|.++. |+=.|-+|+.|.- +
T Consensus 174 ~pyiGL~g~yr~~-~~~l~~~~~~s~~v~a~~~D~H~~R~-l~F~d~~~~~~~~~~~~~~~Y~ltp~~sl~~e~~y~~-~ 250 (293)
T 2x55_A 174 MPYIGLAGQYRIN-DFELNALFKFSDWVRAHDNDEHYMRD-LTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSK-Y 250 (293)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEEEEEEEEEEEGGGT-EEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE-E
T ss_pred eeeeeEEEEEEec-cEEEEEEEecceeEEEecccHHhccC-CccccccCCCceEEEEEEEEEecCCCEEEEEEEEEEe-e
Confidence 4557888877775 66665544 22222232 465 6666663 5566777888753 2
Q ss_pred ecCCCCeEE-----------eccceeEEEeccCCCCCceEEEe
Q 012850 177 VDKCGNYWD-----------VPFSMAADLASVASDSGPSYHLT 208 (455)
Q Consensus 177 ~d~~~gy~d-----------Vp~S~~~~laS~~~~sGlsY~~g 208 (455)
.+++|.-+. .+.+.|+...+-+-.-|+.|++|
T Consensus 251 ~~~kG~t~~~~~~~g~~~~~~~n~aG~~~~~~~v~~gl~Y~F~ 293 (293)
T 2x55_A 251 DEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRFG 293 (293)
T ss_dssp CC----------------CBCGGGEEEEEEEEEEEEEEEEEEC
T ss_pred ecccCceEEecCCCCceeeccCCccceeeeeEEEEEEEEEEcC
Confidence 233333332 35566666555443345677664
No 2
>3oss_C Type 2 secretion system, GSPC; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=9.65 E-value=2.5e+02 Score=21.93 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=20.2
Q ss_pred cCCceEEEEeecCcee-ecCCCCeEEec
Q 012850 161 FPNHNFTLEALWPGLF-VDKCGNYWDVP 187 (455)
Q Consensus 161 lp~H~Lt~Eas~rerf-~d~~~gy~dVp 187 (455)
+|..+.+++..|++|- +|..|.|.+..
T Consensus 39 i~g~~a~l~~V~~DrVIl~~~G~~E~L~ 66 (68)
T 3oss_C 39 LDSHNAVIEEINRDHVMLRYQGKIERLS 66 (68)
T ss_dssp CSSSSEEEEEECSSEEEEEETTEEEEEE
T ss_pred eCCCCEEEEEEeCCEEEEecCCEEEEEE
Confidence 6767888888888886 47777777653
No 3
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A
Probab=6.24 E-value=2.6e+02 Score=23.25 Aligned_cols=11 Identities=55% Similarity=1.090 Sum_probs=9.0
Q ss_pred EeeceEEEEee
Q 012850 393 IAGPFSFRVDS 403 (455)
Q Consensus 393 I~GP~rfrv~s 403 (455)
+-|||+|||-+
T Consensus 61 l~GplSfRvt~ 71 (100)
T 3ft1_A 61 LVGPFNFRFMS 71 (100)
T ss_dssp CCSSEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 56899999964
No 4
>1i78_A Protease VII; integral outer membrane protein, beta barrel, HYDR; HET: BOG; 2.60A {Escherichia coli} SCOP: f.4.4.1
Probab=5.64 E-value=7.9e+02 Score=23.88 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=22.3
Q ss_pred ccccceeeeeeccCCceEEEEee------ecCCCcc-c-cceEEEEeec
Q 012850 121 LYALGFCSELLFTDDDTLLLSYD------SYGHNNT-S-RKKAVFCHKF 161 (455)
Q Consensus 121 lyalG~~s~~~l~~~ttL~~sle------~~~~~~~-~-R~k~~l~hkl 161 (455)
+.-+|+..+..+. +..|.+++. ..+..++ . |.++.|.++.
T Consensus 178 ~pyiGL~g~y~~~-~~~l~~~~~~s~~v~a~~~D~H~~~rr~l~F~d~~ 225 (297)
T 1i78_A 178 MPYIGLTGSYRYE-DFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKV 225 (297)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEEEEEEEEEEEECSSSCEEEEEEE
T ss_pred eeeeeEEEEEeeC-cEEEEEEEecceeEEEeecchhhcccCCCcceecc
Confidence 4457888777776 555554432 2222232 3 6677777764
No 5
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=5.14 E-value=3.5e+02 Score=22.90 Aligned_cols=12 Identities=50% Similarity=0.993 Sum_probs=9.7
Q ss_pred eEeeceEEEEee
Q 012850 392 QIAGPFSFRVDS 403 (455)
Q Consensus 392 QI~GP~rfrv~s 403 (455)
-+-|||+|||-+
T Consensus 71 ~L~GplSfRvtt 82 (108)
T 2jnz_A 71 PLVGPFNFRFMS 82 (108)
T ss_dssp CCCSSEEEEEEE
T ss_pred CCCCCEEEEEEE
Confidence 467999999964
No 6
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=4.93 E-value=3.1e+02 Score=22.18 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEEEeeh--------hhcCcceEEEEeccccccceE
Q 012850 421 FAIEYAL--------QVLGSAKAVAWYAPKHQEFMI 448 (455)
Q Consensus 421 y~leysl--------rtlgSak~vawYnP~rqegmv 448 (455)
|+-|+++ +-|-++++|++|++.++.-.|
T Consensus 30 yg~E~sL~~kv~qv~~qL~~GeavIvfse~~Esv~I 65 (78)
T 1y0n_A 30 NGDETPLDVRVERARHALRRGEAVILFDPESQQCQL 65 (78)
T ss_dssp ----CCHHHHHHHHHHHHHTTSEEEEECTTTCCEEE
T ss_pred ccccccHHHHHHHHHHHHHcCCEEEEECCCCCeEee
Confidence 5556655 367899999999999876544
No 7
>2jmm_A Outer membrane protein A; NMR {Escherichia coli}
Probab=4.78 E-value=6.8e+02 Score=20.91 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=13.1
Q ss_pred cccceeeeee----ccCCceEEEEeeec
Q 012850 122 YALGFCSELL----FTDDDTLLLSYDSY 145 (455)
Q Consensus 122 yalG~~s~~~----l~~~ttL~~sle~~ 145 (455)
+.+|+..|.. ++++.++.++++..
T Consensus 106 ~~~G~Gvey~~~~~~~~~~~~~~eY~~~ 133 (156)
T 2jmm_A 106 PVFAGGVEYVIRRRITPEIATRLEYQWT 133 (156)
T ss_dssp EEEEEEEEEECSSSCSSSEEEEEEEEEE
T ss_pred eEEEEEEEEeeccccCcCeEEEEEEEEE
Confidence 4455555555 56655555555433
No 8
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
Probab=4.35 E-value=6.8e+02 Score=20.49 Aligned_cols=6 Identities=50% Similarity=0.966 Sum_probs=2.9
Q ss_pred CceEEE
Q 012850 202 GPSYHL 207 (455)
Q Consensus 202 GlsY~~ 207 (455)
|++||+
T Consensus 165 Gl~Y~F 170 (171)
T 1qjp_A 165 GVSYRF 170 (171)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 345554
No 9
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=3.84 E-value=4.1e+02 Score=20.16 Aligned_cols=12 Identities=25% Similarity=0.739 Sum_probs=9.4
Q ss_pred ceEEEEeccccc
Q 012850 433 AKAVAWYAPKHQ 444 (455)
Q Consensus 433 ak~vawYnP~rq 444 (455)
+.+|-|||.+.-
T Consensus 24 g~ivgwyct~lt 35 (62)
T 2rh2_A 24 GQIVGWYCTNLT 35 (62)
T ss_dssp EEEEEEECCSSC
T ss_pred ceEeEEEEcccc
Confidence 378999998763
No 10
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=3.71 E-value=4.1e+02 Score=22.95 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=0.0
Q ss_pred eEeeceEEEEeeeEEeecCCCceeec
Q 012850 392 QIAGPFSFRVDSGVVIDLKNRDICAH 417 (455)
Q Consensus 392 QI~GP~rfrv~s~~sid~~~~~i~~~ 417 (455)
+.+||++++++ .+-++.+|++.+.
T Consensus 99 ~~~G~v~V~f~--~d~~L~~G~~rv~ 122 (132)
T 2lc0_A 99 QTYGDVVVRFE--QSSNLHTGQFRAR 122 (132)
T ss_dssp BCSSCCEEEEE--EETTSCTTCEEEE
T ss_pred eecCCeEEEEE--ECCCCCCCeeEEE
Done!