Query 012850
Match_columns 455
No_of_seqs 47 out of 49
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 17:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012850.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012850hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bz7a1 b.34.3.1 (A:34-79) Myo 25.1 12 0.00085 25.4 1.1 10 437-446 2-11 (46)
2 d1t16a_ f.4.3.4 (A:) Long-chai 12.2 4E+02 0.029 22.6 8.9 29 113-143 318-346 (427)
3 d1qfha2 b.1.18.10 (A:750-857) 10.8 2.2E+02 0.016 21.4 5.7 29 418-446 53-81 (108)
4 d1whoa_ b.7.3.1 (A:) PHL P 2 { 6.0 1.3E+02 0.0096 22.4 2.3 11 393-403 60-70 (94)
5 d1n10a1 b.7.3.1 (A:1146-1240) 5.7 1.5E+02 0.011 22.3 2.4 10 393-402 61-70 (95)
6 d1k8ib2 d.19.1.1 (B:1-94) Clas 4.7 3.6E+02 0.026 20.6 4.1 39 397-444 2-40 (94)
7 d1w9sa_ b.18.1.10 (A:) Hypothe 4.5 2.3E+02 0.016 21.7 2.9 22 431-452 53-74 (134)
8 d1txka1 b.1.18.2 (A:397-511) G 4.4 4.9E+02 0.036 19.8 5.0 23 431-453 73-95 (115)
9 d2rh2a1 b.34.4.1 (A:21-78) R67 4.2 1.7E+02 0.013 20.2 1.6 12 433-444 20-31 (58)
10 d1r0ua_ b.60.1.5 (A:) Hypothet 4.2 4.4E+02 0.032 20.7 4.6 50 387-439 90-142 (146)
No 1
>d3bz7a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=25.14 E-value=12 Score=25.42 Aligned_cols=10 Identities=40% Similarity=0.993 Sum_probs=8.3
Q ss_pred EEeccccccc
Q 012850 437 AWYAPKHQEF 446 (455)
Q Consensus 437 awYnP~rqeg 446 (455)
+||||..+|-
T Consensus 2 iwynpdpker 11 (46)
T d3bz7a1 2 IWYNPDPKER 11 (46)
T ss_dssp EEECSSTTCT
T ss_pred cccCCCcccc
Confidence 7999998873
No 2
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=12.18 E-value=4e+02 Score=22.59 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=19.4
Q ss_pred CccCCCCcccccceeeeeeccCCceEEEEee
Q 012850 113 LHALRDKSLYALGFCSELLFTDDDTLLLSYD 143 (455)
Q Consensus 113 ~~~l~D~SlyalG~~s~~~l~~~ttL~~sle 143 (455)
.++..|...+++|+ |..++++.+|.+++.
T Consensus 318 ~~~~~~~~~~~~G~--ey~~~~~l~lR~Gy~ 346 (427)
T d1t16a_ 318 HEGFKDAYRIALGT--TYYYDDNWTFRTGIA 346 (427)
T ss_dssp ECCCCCEEEEEEEE--EECCSSSEEEEEEEE
T ss_pred cccccceEEEEEEE--EEEecccEEEEEEEE
Confidence 45566766666664 677788888887553
No 3
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=10.78 E-value=2.2e+02 Score=21.36 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=21.0
Q ss_pred ccEEEEEeehhhcCcceEEEEeccccccc
Q 012850 418 DSVFAIEYALQVLGSAKAVAWYAPKHQEF 446 (455)
Q Consensus 418 d~vy~leyslrtlgSak~vawYnP~rqeg 446 (455)
|=.|.+.|--+.-|...|.+.|+=++=.|
T Consensus 53 dGty~v~y~p~~~G~y~v~V~~~g~~I~g 81 (108)
T d1qfha2 53 DGTYTAAYSLVGNGRFSTGVKLNGKHIEG 81 (108)
T ss_dssp SSEEEEEEEEESSEEEEEEEEETTEECBT
T ss_pred CCEEEEEEEECcceeEEEEEEECCEECCC
Confidence 44588888888778788888887555443
No 4
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=5.99 E-value=1.3e+02 Score=22.44 Aligned_cols=11 Identities=45% Similarity=1.029 Sum_probs=8.6
Q ss_pred EeeceEEEEee
Q 012850 393 IAGPFSFRVDS 403 (455)
Q Consensus 393 I~GP~rfrv~s 403 (455)
.-|||+|||-+
T Consensus 60 ~~gplsfRvt~ 70 (94)
T d1whoa_ 60 LQGPFNFRFLT 70 (94)
T ss_dssp CCSSEEEEEEE
T ss_pred CCccEEEEEEE
Confidence 45899999954
No 5
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=5.72 E-value=1.5e+02 Score=22.29 Aligned_cols=10 Identities=40% Similarity=0.992 Sum_probs=7.9
Q ss_pred EeeceEEEEe
Q 012850 393 IAGPFSFRVD 402 (455)
Q Consensus 393 I~GP~rfrv~ 402 (455)
.-|||+||+-
T Consensus 61 ~~gpls~Rvt 70 (95)
T d1n10a1 61 LTGPFTVRYT 70 (95)
T ss_dssp CCSCEEEEEE
T ss_pred CCcCEEEEEE
Confidence 4579999984
No 6
>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=4.70 E-value=3.6e+02 Score=20.64 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=29.1
Q ss_pred eEEEEeeeEEeecCCCceeecccEEEEEeehhhcCcceEEEEeccccc
Q 012850 397 FSFRVDSGVVIDLKNRDICAHDSVFAIEYALQVLGSAKAVAWYAPKHQ 444 (455)
Q Consensus 397 ~rfrv~s~~sid~~~~~i~~~d~vy~leyslrtlgSak~vawYnP~rq 444 (455)
|+.-|+|.+.+|- +|- .-|+.|.|.+-.-+| +=|.|.++
T Consensus 2 FV~HveSsC~Ld~-~Gt--~~dF~ycvsFNK~~L------~CwDp~~~ 40 (94)
T d1k8ib2 2 FVAHVESTCVLND-AGT--PQDFTYCVSFNKDLL------ACWDPDVG 40 (94)
T ss_dssp CEEEEEEEEEEES-TTC--EEEECCEEEETTSCC------EEEETTTT
T ss_pred ceeEEeecceecC-CCC--ccceeEEEEecCCce------eeecCCcC
Confidence 6778999999996 665 668889999977554 44566554
No 7
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]}
Probab=4.48 E-value=2.3e+02 Score=21.68 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=17.9
Q ss_pred CcceEEEEeccccccceEEEEe
Q 012850 431 GSAKAVAWYAPKHQEFMIELRF 452 (455)
Q Consensus 431 gSak~vawYnP~rqegmveLRi 452 (455)
|..++.++|.-....|.+|||+
T Consensus 53 G~y~i~~r~As~~~~g~i~l~~ 74 (134)
T d1w9sa_ 53 DASSIEVRVASDTPGGRIEIRT 74 (134)
T ss_dssp CEEEEEEEEEESSSCEEEEEEE
T ss_pred CcEEEEEEEEccCCCcEEEEEE
Confidence 6678999997666788899987
No 8
>d1txka1 b.1.18.2 (A:397-511) Glucans biosynthesis protein G (MdoG, OpgG), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.44 E-value=4.9e+02 Score=19.79 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=16.7
Q ss_pred CcceEEEEeccccccceEEEEee
Q 012850 431 GSAKAVAWYAPKHQEFMIELRFF 453 (455)
Q Consensus 431 gSak~vawYnP~rqegmveLRif 453 (455)
|.-++++-.-|.--+..||||.+
T Consensus 73 ~gwRl~f~l~p~d~~~~vELR~~ 95 (115)
T d1txka1 73 KGWRLVMRVKVKDAKKTTEMRAA 95 (115)
T ss_dssp TEEEEEEEEEESCTTSCEEEEEE
T ss_pred CeEEEEEEEEcCCCCCCEEEEEE
Confidence 44567777777666678888876
No 9
>d2rh2a1 b.34.4.1 (A:21-78) R67 dihydrofolate reductase {Escherichia coli, plasmid PLZ1 [TaxId: 562]}
Probab=4.20 E-value=1.7e+02 Score=20.18 Aligned_cols=12 Identities=25% Similarity=0.739 Sum_probs=9.5
Q ss_pred ceEEEEeccccc
Q 012850 433 AKAVAWYAPKHQ 444 (455)
Q Consensus 433 ak~vawYnP~rq 444 (455)
+.+|-|||.+.-
T Consensus 20 g~ivgwyct~lt 31 (58)
T d2rh2a1 20 GQIVGWYCTNLT 31 (58)
T ss_dssp EEEEEEECCSSC
T ss_pred ceEeEEEEcccc
Confidence 379999998763
No 10
>d1r0ua_ b.60.1.5 (A:) Hypothetical protein YwiB {Bacillus subtilis [TaxId: 1423]}
Probab=4.17 E-value=4.4e+02 Score=20.66 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=25.6
Q ss_pred EEEeeeEeeceEEEEeee-EEeecC--CCceeecccEEEEEeehhhcCcceEEEEe
Q 012850 387 FSVQQQIAGPFSFRVDSG-VVIDLK--NRDICAHDSVFAIEYALQVLGSAKAVAWY 439 (455)
Q Consensus 387 l~lqQQI~GP~rfrv~s~-~sid~~--~~~i~~~d~vy~leyslrtlgSak~vawY 439 (455)
.+.=+==||.+.+.+.+. +.+|.. .|+|.++ |.|+-.-+..|..++.+-|
T Consensus 90 ~~~Y~Tp~G~~~l~~~T~~l~~~~~e~~g~i~i~---Y~L~~~~~~~g~y~l~I~~ 142 (146)
T d1r0ua_ 90 IAKYKMSFGELELKTSTKSIQSDLDEEKGRISIA---YDMHVGDEQEHLHNMTITY 142 (146)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEEECSSEEEEEEE---EEEECC----CEEEEEEEE
T ss_pred EEEEeCCCEEEEEEEEccEEEEEecCCCeEEEEE---EEEeeCCEeeEEEEEEEEE
Confidence 333444478888888763 344442 2335444 6666666666666655543
Done!