Query 012852
Match_columns 455
No_of_seqs 278 out of 1614
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:58:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02229 alpha-galactosidase 100.0 3E-107 7E-112 834.0 38.7 416 32-455 12-427 (427)
2 PLN02808 alpha-galactosidase 100.0 4E-103 8E-108 799.3 38.0 364 81-448 22-386 (386)
3 PLN02692 alpha-galactosidase 100.0 6E-103 1E-107 799.5 38.4 366 81-449 46-412 (412)
4 KOG2366 Alpha-D-galactosidase 100.0 2.6E-88 5.7E-93 669.0 26.1 372 76-449 18-413 (414)
5 PLN02899 alpha-galactosidase 100.0 5.6E-78 1.2E-82 632.2 34.2 363 81-447 21-632 (633)
6 PLN03231 putative alpha-galact 100.0 1.2E-75 2.6E-80 591.1 23.6 265 91-357 1-352 (357)
7 PF02065 Melibiase: Melibiase; 100.0 6E-47 1.3E-51 390.1 21.1 335 51-408 1-393 (394)
8 COG3345 GalA Alpha-galactosida 100.0 6.2E-36 1.4E-40 307.6 16.5 305 14-345 218-578 (687)
9 PLN02219 probable galactinol-- 99.9 8E-25 1.7E-29 235.0 30.5 350 88-452 191-658 (775)
10 PLN02355 probable galactinol-- 99.9 1.7E-24 3.8E-29 232.9 29.9 349 88-452 195-666 (758)
11 PLN02684 Probable galactinol-- 99.9 7.7E-23 1.7E-27 219.6 27.7 341 93-452 204-658 (750)
12 PF05691 Raffinose_syn: Raffin 99.9 3.1E-22 6.8E-27 216.8 28.5 345 93-453 197-673 (747)
13 PLN02711 Probable galactinol-- 99.9 1.6E-22 3.4E-27 217.5 25.8 344 93-452 215-688 (777)
14 PLN02982 galactinol-raffinose 99.8 2.4E-18 5.1E-23 185.3 23.4 346 93-453 224-774 (865)
15 cd06592 GH31_glucosidase_KIAA1 99.7 1.6E-16 3.5E-21 159.8 20.0 168 89-274 12-227 (303)
16 cd06593 GH31_xylosidase_YicI Y 99.5 2.6E-12 5.6E-17 129.5 17.7 169 98-280 14-236 (308)
17 cd06589 GH31 The enzymes of gl 99.3 6.6E-11 1.4E-15 116.9 16.2 159 97-280 13-198 (265)
18 PF10566 Glyco_hydro_97: Glyco 99.2 4.4E-11 9.5E-16 118.0 11.5 214 104-332 28-256 (273)
19 cd06599 GH31_glycosidase_Aec37 99.2 4E-10 8.7E-15 114.2 16.8 165 104-280 25-250 (317)
20 cd06598 GH31_transferase_CtsZ 99.1 1.9E-09 4E-14 109.4 17.3 165 104-280 20-243 (317)
21 cd06604 GH31_glucosidase_II_Ma 99.1 1.4E-09 2.9E-14 111.4 16.1 160 104-279 20-248 (339)
22 PRK10658 putative alpha-glucos 99.1 4.1E-09 9E-14 116.3 17.9 165 101-279 276-494 (665)
23 cd06601 GH31_lyase_GLase GLase 99.1 5.4E-09 1.2E-13 106.6 17.5 159 105-279 21-230 (332)
24 cd06595 GH31_xylosidase_XylS-l 99.1 3.5E-09 7.7E-14 106.1 15.6 163 104-278 21-222 (292)
25 cd06591 GH31_xylosidase_XylS X 99.1 8.4E-09 1.8E-13 104.7 18.4 162 104-279 20-242 (319)
26 cd06600 GH31_MGAM-like This fa 99.0 1E-08 2.3E-13 104.0 17.8 160 104-279 20-226 (317)
27 cd06602 GH31_MGAM_SI_GAA This 99.0 3.1E-08 6.7E-13 101.4 21.0 159 105-279 21-230 (339)
28 PF01055 Glyco_hydro_31: Glyco 99.0 2.8E-09 6E-14 112.6 12.1 160 105-280 40-265 (441)
29 cd06597 GH31_transferase_CtsY 99.0 3.3E-08 7.1E-13 101.3 18.1 170 97-279 13-262 (340)
30 cd06594 GH31_glucosidase_YihQ 98.9 1E-07 2.2E-12 96.8 20.8 160 106-278 21-245 (317)
31 cd06603 GH31_GANC_GANAB_alpha 98.9 7.7E-08 1.7E-12 98.5 19.4 161 103-279 19-248 (339)
32 COG1501 Alpha-glucosidases, fa 98.9 1.7E-08 3.6E-13 112.8 15.7 170 93-279 266-492 (772)
33 PLN02763 hydrolase, hydrolyzin 98.7 7E-07 1.5E-11 101.4 19.2 159 105-279 198-427 (978)
34 PRK10426 alpha-glucosidase; Pr 98.6 1.1E-06 2.4E-11 96.9 17.1 154 106-272 219-433 (635)
35 KOG1065 Maltase glucoamylase a 97.8 6.4E-05 1.4E-09 83.2 9.8 114 94-215 295-449 (805)
36 TIGR02456 treS_nterm trehalose 97.2 0.3 6.4E-06 53.4 28.0 69 371-445 470-538 (539)
37 cd06596 GH31_CPE1046 CPE1046 i 97.0 0.011 2.3E-07 58.3 12.8 177 105-327 42-223 (261)
38 PRK10785 maltodextrin glucosid 96.6 0.92 2E-05 50.3 25.0 136 103-246 174-375 (598)
39 PRK14706 glycogen branching en 96.2 0.86 1.9E-05 50.9 22.4 114 123-240 178-354 (639)
40 PRK09441 cytoplasmic alpha-amy 96.0 2.3 5E-05 45.7 23.6 52 186-240 207-260 (479)
41 PRK12313 glycogen branching en 95.3 6.4 0.00014 43.9 27.4 102 106-213 168-311 (633)
42 PF02638 DUF187: Glycosyl hydr 94.4 0.3 6.4E-06 49.7 10.4 103 106-215 17-165 (311)
43 PRK12568 glycogen branching en 94.3 12 0.00026 42.5 24.9 94 114-213 276-410 (730)
44 PF02806 Alpha-amylase_C: Alph 94.0 0.44 9.6E-06 39.1 8.9 71 371-446 11-94 (95)
45 TIGR01515 branching_enzym alph 93.7 0.71 1.5E-05 51.3 12.3 128 105-241 153-346 (613)
46 PRK14705 glycogen branching en 93.3 17 0.00037 43.7 23.3 92 113-213 771-906 (1224)
47 PF13200 DUF4015: Putative gly 92.7 0.61 1.3E-05 47.5 9.1 101 106-217 11-150 (316)
48 PF08533 Glyco_hydro_42C: Beta 92.7 0.15 3.3E-06 38.5 3.6 55 372-444 3-57 (58)
49 PRK05402 glycogen branching en 91.2 32 0.00069 39.2 28.1 101 107-213 264-406 (726)
50 PF01120 Alpha_L_fucos: Alpha- 90.8 2.6 5.7E-05 43.4 11.5 84 158-242 140-243 (346)
51 smart00812 Alpha_L_fucos Alpha 90.5 3.4 7.3E-05 43.3 12.1 121 123-246 91-236 (384)
52 PF14509 GH97_C: Glycosyl-hydr 87.8 7.3 0.00016 33.1 10.1 74 371-447 16-103 (103)
53 PF09260 DUF1966: Domain of un 85.6 7.8 0.00017 32.2 9.0 72 371-444 8-80 (91)
54 PF11941 DUF3459: Domain of un 84.6 3.4 7.5E-05 33.3 6.4 54 375-443 36-89 (89)
55 PF10438 Cyc-maltodext_C: Cycl 84.5 1.8 3.9E-05 35.0 4.5 66 371-445 11-78 (78)
56 TIGR02104 pulA_typeI pullulana 81.9 12 0.00027 41.4 11.4 87 157-246 230-351 (605)
57 TIGR02402 trehalose_TreZ malto 80.0 20 0.00044 39.3 12.0 123 106-237 109-271 (542)
58 COG0296 GlgB 1,4-alpha-glucan 79.5 6.3 0.00014 43.8 7.9 100 106-214 163-306 (628)
59 PRK06233 hypothetical protein; 76.4 11 0.00025 39.2 8.4 107 100-213 157-278 (372)
60 TIGR02455 TreS_stutzeri trehal 75.5 12 0.00026 41.7 8.6 70 373-448 612-684 (688)
61 PF14488 DUF4434: Domain of un 75.1 9.5 0.00021 35.2 6.7 73 102-181 14-92 (166)
62 PLN02960 alpha-amylase 75.1 24 0.00053 40.8 11.1 103 106-214 414-559 (897)
63 PLN02877 alpha-amylase/limit d 71.7 58 0.0013 38.3 13.2 86 158-246 468-599 (970)
64 COG1649 Uncharacterized protei 71.7 22 0.00047 37.8 9.1 108 104-215 60-210 (418)
65 smart00632 Aamy_C Aamy_C domai 71.6 27 0.0006 27.9 7.9 54 381-441 16-74 (81)
66 cd03465 URO-D_like The URO-D _ 71.3 16 0.00034 36.8 7.9 92 123-241 178-269 (330)
67 TIGR02403 trehalose_treC alpha 68.1 57 0.0012 35.7 11.9 63 105-174 24-93 (543)
68 cd02875 GH18_chitobiase Chitob 67.8 19 0.0004 37.3 7.6 83 159-243 67-157 (358)
69 PF01791 DeoC: DeoC/LacD famil 66.4 21 0.00046 34.4 7.4 82 158-241 114-199 (236)
70 PLN00196 alpha-amylase; Provis 66.0 17 0.00036 38.8 7.0 112 94-214 32-206 (428)
71 TIGR02102 pullulan_Gpos pullul 63.8 1E+02 0.0022 37.0 13.3 87 157-246 556-674 (1111)
72 PRK14510 putative bifunctional 62.0 56 0.0012 39.6 11.0 84 157-240 248-371 (1221)
73 cd02931 ER_like_FMN Enoate red 61.8 28 0.00061 36.4 7.6 106 103-211 138-272 (382)
74 PRK13398 3-deoxy-7-phosphohept 60.7 52 0.0011 32.8 9.0 104 105-242 38-141 (266)
75 KOG3111 D-ribulose-5-phosphate 60.6 23 0.00049 33.7 5.9 81 158-243 101-198 (224)
76 PF07302 AroM: AroM protein; 59.7 1.2E+02 0.0027 29.4 11.0 121 105-242 67-209 (221)
77 PF14871 GHL6: Hypothetical gl 59.3 68 0.0015 28.4 8.6 60 112-179 4-67 (132)
78 PLN02361 alpha-amylase 58.3 65 0.0014 34.1 9.6 101 108-216 29-184 (401)
79 PF05913 DUF871: Bacterial pro 57.9 12 0.00025 39.0 3.9 87 106-216 12-101 (357)
80 PRK12595 bifunctional 3-deoxy- 56.8 61 0.0013 33.7 9.0 102 106-242 130-232 (360)
81 TIGR02103 pullul_strch alpha-1 56.6 44 0.00096 39.0 8.6 86 158-246 406-528 (898)
82 PF11852 DUF3372: Domain of un 55.4 19 0.0004 33.5 4.4 57 382-445 105-166 (168)
83 cd00465 URO-D_CIMS_like The UR 54.4 20 0.00044 35.6 5.0 89 123-240 154-247 (306)
84 smart00642 Aamy Alpha-amylase 53.5 40 0.00086 30.9 6.3 65 106-176 17-90 (166)
85 PRK03705 glycogen debranching 53.0 1.1E+02 0.0023 34.7 10.7 60 157-216 243-341 (658)
86 PF07555 NAGidase: beta-N-acet 51.0 46 0.001 33.8 6.9 100 104-216 11-116 (306)
87 cd02932 OYE_YqiM_FMN Old yello 50.9 69 0.0015 32.7 8.3 102 103-211 142-261 (336)
88 TIGR01361 DAHP_synth_Bsub phos 50.7 58 0.0013 32.2 7.4 102 106-242 37-139 (260)
89 cd02803 OYE_like_FMN_family Ol 50.7 55 0.0012 33.0 7.5 105 103-214 129-251 (327)
90 PF02055 Glyco_hydro_30: O-Gly 50.4 85 0.0018 34.2 9.2 86 339-444 405-494 (496)
91 TIGR01463 mtaA_cmuA methyltran 48.9 36 0.00079 34.6 5.9 89 123-241 190-281 (340)
92 TIGR03569 NeuB_NnaB N-acetylne 48.4 54 0.0012 33.7 7.0 93 106-213 14-118 (329)
93 PF00834 Ribul_P_3_epim: Ribul 47.4 36 0.00079 32.3 5.2 23 158-180 94-116 (201)
94 COG1830 FbaB DhnA-type fructos 47.0 1.1E+02 0.0025 30.4 8.6 76 158-241 132-208 (265)
95 COG2200 Rtn c-di-GMP phosphodi 47.0 53 0.0012 32.2 6.5 74 158-244 138-215 (256)
96 cd08577 PI-PLCc_GDPD_SF_unchar 46.5 41 0.00089 32.6 5.5 41 158-211 187-227 (228)
97 TIGR02109 PQQ_syn_pqqE coenzym 46.5 1.4E+02 0.0029 30.6 9.7 82 103-215 35-116 (358)
98 TIGR02401 trehalose_TreY malto 46.0 69 0.0015 37.0 7.9 68 103-176 11-85 (825)
99 PF06964 Alpha-L-AF_C: Alpha-L 46.0 78 0.0017 29.0 7.1 27 380-406 103-129 (177)
100 cd02871 GH18_chitinase_D-like 45.4 79 0.0017 31.9 7.7 87 157-243 61-154 (312)
101 cd08607 GDPD_GDE5 Glycerophosp 45.0 38 0.00082 33.6 5.2 43 159-213 248-290 (290)
102 cd01948 EAL EAL domain. This d 44.5 53 0.0012 30.7 6.0 74 157-243 133-210 (240)
103 cd00598 GH18_chitinase-like Th 44.4 1.1E+02 0.0025 28.1 8.1 115 125-243 22-147 (210)
104 PRK14511 maltooligosyl trehalo 44.4 76 0.0016 36.9 8.0 68 103-176 15-89 (879)
105 PRK13523 NADPH dehydrogenase N 44.2 86 0.0019 32.2 7.7 102 103-212 130-248 (337)
106 PRK08508 biotin synthase; Prov 43.4 85 0.0018 31.2 7.4 80 105-212 40-120 (279)
107 PF00128 Alpha-amylase: Alpha 43.4 25 0.00055 34.1 3.6 124 107-240 3-194 (316)
108 PRK06852 aldolase; Validated 42.8 1.3E+02 0.0028 30.7 8.6 80 158-241 156-236 (304)
109 cd06545 GH18_3CO4_chitinase Th 42.7 41 0.00089 32.7 5.0 86 143-232 35-125 (253)
110 COG0407 HemE Uroporphyrinogen- 42.6 68 0.0015 33.3 6.7 97 123-252 199-296 (352)
111 PRK05301 pyrroloquinoline quin 42.5 1.5E+02 0.0033 30.5 9.5 82 103-215 44-125 (378)
112 cd04747 OYE_like_5_FMN Old yel 41.6 1.1E+02 0.0025 31.7 8.2 105 103-211 132-255 (361)
113 PRK08091 ribulose-phosphate 3- 41.4 1.2E+02 0.0026 29.6 7.8 76 158-242 105-207 (228)
114 smart00052 EAL Putative diguan 41.2 74 0.0016 29.7 6.4 72 158-242 135-210 (241)
115 PRK12677 xylose isomerase; Pro 41.0 20 0.00044 37.6 2.6 62 108-174 114-177 (384)
116 PF09863 DUF2090: Uncharacteri 40.7 63 0.0014 32.9 5.9 127 189-332 123-271 (311)
117 PRK10605 N-ethylmaleimide redu 40.6 1.1E+02 0.0024 31.8 8.0 106 103-212 147-270 (362)
118 cd08555 PI-PLCc_GDPD_SF Cataly 40.5 65 0.0014 29.5 5.7 42 158-212 138-179 (179)
119 PRK09722 allulose-6-phosphate 40.3 59 0.0013 31.7 5.5 76 158-242 97-197 (229)
120 cd08564 GDPD_GsGDE_like Glycer 40.1 51 0.0011 32.3 5.2 45 159-213 213-257 (265)
121 PRK13397 3-deoxy-7-phosphohept 39.8 2.3E+02 0.0051 28.0 9.7 102 106-242 27-129 (250)
122 KOG3340 Alpha-L-fucosidase [Ca 38.5 64 0.0014 33.2 5.5 22 158-179 152-173 (454)
123 cd06543 GH18_PF-ChiA-like PF-C 38.1 2.9E+02 0.0063 27.8 10.3 87 157-243 55-145 (294)
124 COG3867 Arabinogalactan endo-1 37.7 3.5E+02 0.0076 27.7 10.4 116 123-243 73-221 (403)
125 PLN03244 alpha-amylase; Provis 37.7 76 0.0016 36.5 6.5 59 155-213 440-533 (872)
126 PF00563 EAL: EAL domain; Int 37.5 1.1E+02 0.0025 28.3 7.0 70 158-242 136-210 (236)
127 PLN02389 biotin synthase 37.4 2E+02 0.0043 30.1 9.3 83 104-213 115-197 (379)
128 PRK08195 4-hyroxy-2-oxovalerat 37.4 4.7E+02 0.01 26.8 12.8 120 102-250 19-143 (337)
129 cd04734 OYE_like_3_FMN Old yel 37.4 97 0.0021 31.8 6.9 102 103-211 129-249 (343)
130 cd08575 GDPD_GDE4_like Glycero 36.6 62 0.0013 31.8 5.2 41 159-213 221-261 (264)
131 cd08605 GDPD_GDE5_like_1_plant 36.0 55 0.0012 32.3 4.8 42 159-212 240-281 (282)
132 PF03102 NeuB: NeuB family; I 36.0 1.1E+02 0.0025 29.9 6.8 42 157-213 57-98 (241)
133 cd02930 DCR_FMN 2,4-dienoyl-Co 35.9 1.3E+02 0.0028 31.0 7.6 102 103-211 125-244 (353)
134 PF02449 Glyco_hydro_42: Beta- 35.6 22 0.00047 36.8 1.8 60 105-177 7-68 (374)
135 TIGR03217 4OH_2_O_val_ald 4-hy 35.3 5.1E+02 0.011 26.6 13.6 86 102-210 18-106 (333)
136 cd06542 GH18_EndoS-like Endo-b 35.3 84 0.0018 30.4 5.8 88 156-243 51-151 (255)
137 COG3669 Alpha-L-fucosidase [Ca 35.3 69 0.0015 33.7 5.3 59 112-177 58-122 (430)
138 PRK13396 3-deoxy-7-phosphohept 35.0 1.7E+02 0.0038 30.4 8.2 102 105-241 112-214 (352)
139 cd08580 GDPD_Rv2277c_like Glyc 34.8 84 0.0018 31.1 5.8 41 159-213 219-260 (263)
140 PRK08673 3-deoxy-7-phosphohept 34.4 1.5E+02 0.0034 30.5 7.7 104 105-242 104-207 (335)
141 PRK10933 trehalose-6-phosphate 34.2 1.2E+02 0.0027 33.3 7.5 62 106-174 31-99 (551)
142 cd03311 CIMS_C_terminal_like C 33.9 1.2E+02 0.0027 30.6 7.0 101 107-215 147-252 (332)
143 cd02933 OYE_like_FMN Old yello 33.7 2.2E+02 0.0048 29.2 8.8 106 103-212 140-262 (338)
144 cd06522 GH25_AtlA-like AtlA is 33.6 1.8E+02 0.0039 27.0 7.6 103 123-241 22-130 (192)
145 PRK08227 autoinducer 2 aldolas 32.9 2.1E+02 0.0046 28.5 8.2 121 92-241 78-198 (264)
146 TIGR01668 YqeG_hyp_ppase HAD s 32.7 68 0.0015 29.2 4.5 44 124-177 22-67 (170)
147 PRK14042 pyruvate carboxylase 32.6 3.7E+02 0.008 30.1 10.8 55 104-177 150-205 (596)
148 PRK15108 biotin synthase; Prov 32.2 1.8E+02 0.0039 30.0 7.9 81 105-214 76-156 (345)
149 TIGR02630 xylose_isom_A xylose 31.9 58 0.0013 34.6 4.2 110 92-210 133-262 (434)
150 cd08583 PI-PLCc_GDPD_SF_unchar 31.9 99 0.0022 29.6 5.7 42 159-214 195-236 (237)
151 cd04735 OYE_like_4_FMN Old yel 31.6 1.7E+02 0.0037 30.1 7.6 104 102-213 131-257 (353)
152 cd03310 CIMS_like CIMS - Cobal 31.5 1.9E+02 0.004 28.9 7.8 73 122-216 160-233 (321)
153 PRK06256 biotin synthase; Vali 31.5 1.2E+02 0.0025 30.8 6.4 80 104-211 90-169 (336)
154 cd08601 GDPD_SaGlpQ_like Glyce 31.4 1E+02 0.0022 29.9 5.7 41 159-213 208-248 (256)
155 PRK12330 oxaloacetate decarbox 31.2 3.9E+02 0.0086 29.2 10.5 55 104-177 151-208 (499)
156 TIGR03128 RuMP_HxlA 3-hexulose 30.9 2.8E+02 0.006 25.7 8.4 66 113-212 68-134 (206)
157 cd03309 CmuC_like CmuC_like. P 30.8 1.9E+02 0.0041 29.6 7.7 87 126-241 169-261 (321)
158 PLN02803 beta-amylase 30.5 76 0.0017 34.7 4.9 57 105-173 104-161 (548)
159 PLN02455 fructose-bisphosphate 30.4 82 0.0018 32.6 4.9 56 159-214 87-147 (358)
160 PLN02801 beta-amylase 30.2 79 0.0017 34.3 4.9 57 105-173 34-91 (517)
161 PRK09454 ugpQ cytoplasmic glyc 30.1 1E+02 0.0022 29.9 5.4 42 159-214 199-240 (249)
162 PRK15308 putative fimbrial pro 29.9 4.2E+02 0.0091 25.9 9.6 65 382-450 34-101 (234)
163 PRK12858 tagatose 1,6-diphosph 29.8 3.2E+02 0.0068 28.3 9.1 50 192-241 185-247 (340)
164 cd08579 GDPD_memb_like Glycero 29.7 94 0.002 29.3 5.0 40 159-212 180-219 (220)
165 cd08563 GDPD_TtGDE_like Glycer 29.0 1E+02 0.0022 29.4 5.1 40 159-212 190-229 (230)
166 PRK13361 molybdenum cofactor b 29.0 6.2E+02 0.013 25.6 11.4 78 104-213 44-123 (329)
167 cd08581 GDPD_like_1 Glyceropho 28.9 88 0.0019 30.0 4.7 38 161-212 191-228 (229)
168 cd08562 GDPD_EcUgpQ_like Glyce 28.6 1.2E+02 0.0027 28.5 5.6 40 159-212 189-228 (229)
169 PRK14507 putative bifunctional 28.5 1.7E+02 0.0037 36.7 7.8 71 103-178 753-829 (1693)
170 TIGR00433 bioB biotin syntheta 28.3 1.6E+02 0.0035 29.0 6.7 81 105-213 62-142 (296)
171 cd08612 GDPD_GDE4 Glycerophosp 28.2 1.1E+02 0.0023 30.8 5.4 41 159-213 251-291 (300)
172 cd08582 GDPD_like_2 Glyceropho 28.1 1.1E+02 0.0024 29.2 5.2 41 159-213 191-231 (233)
173 PLN00197 beta-amylase; Provisi 28.1 93 0.002 34.2 5.0 57 105-173 124-181 (573)
174 PLN02425 probable fructose-bis 27.9 99 0.0021 32.3 5.0 57 159-215 122-183 (390)
175 cd08604 GDPD_SHV3_repeat_2 Gly 27.5 1.5E+02 0.0032 29.9 6.2 54 159-214 240-295 (300)
176 cd08572 GDPD_GDE5_like Glycero 27.2 98 0.0021 31.0 4.9 42 159-212 251-292 (293)
177 PRK09121 5-methyltetrahydropte 27.2 93 0.002 32.0 4.8 104 97-213 139-253 (339)
178 COG0502 BioB Biotin synthase a 27.2 97 0.0021 32.0 4.8 91 90-210 62-160 (335)
179 PRK06769 hypothetical protein; 27.2 1.1E+02 0.0024 27.9 4.8 24 153-177 29-52 (173)
180 PRK00366 ispG 4-hydroxy-3-meth 27.0 2.8E+02 0.006 28.9 8.0 106 157-265 118-241 (360)
181 PLN02447 1,4-alpha-glucan-bran 27.0 1.3E+02 0.0029 34.5 6.3 97 111-213 254-392 (758)
182 PLN02161 beta-amylase 26.9 97 0.0021 33.7 4.9 57 105-173 114-171 (531)
183 cd08556 GDPD Glycerophosphodie 26.8 1.4E+02 0.003 26.9 5.4 40 159-212 150-189 (189)
184 PRK14041 oxaloacetate decarbox 26.7 6.5E+02 0.014 27.2 11.2 54 104-176 149-203 (467)
185 cd08561 GDPD_cytoplasmic_ScUgp 26.7 1.2E+02 0.0026 29.3 5.2 41 159-213 202-242 (249)
186 smart00813 Alpha-L-AF_C Alpha- 26.6 2.3E+02 0.005 26.2 7.0 25 381-405 115-140 (189)
187 COG0036 Rpe Pentose-5-phosphat 26.3 1.1E+02 0.0025 29.6 4.9 28 152-180 93-120 (220)
188 cd08574 GDPD_GDE_2_3_6 Glycero 26.2 1.1E+02 0.0024 29.8 5.0 39 159-211 213-251 (252)
189 TIGR01108 oadA oxaloacetate de 26.1 5.3E+02 0.011 28.7 10.6 54 105-177 146-200 (582)
190 PRK08745 ribulose-phosphate 3- 26.1 1.4E+02 0.003 29.0 5.4 23 158-180 99-121 (223)
191 cd02801 DUS_like_FMN Dihydrour 25.9 5.5E+02 0.012 24.0 9.9 93 105-212 64-159 (231)
192 PLN02705 beta-amylase 25.7 99 0.0021 34.4 4.7 57 105-173 265-322 (681)
193 PF02879 PGM_PMM_II: Phosphogl 25.4 1.7E+02 0.0037 24.0 5.3 49 124-179 43-93 (104)
194 cd06416 GH25_Lys1-like Lys-1 i 25.3 2.7E+02 0.0059 25.8 7.3 102 122-240 18-128 (196)
195 PF13199 Glyco_hydro_66: Glyco 25.1 5.3E+02 0.011 28.6 10.3 221 84-330 96-392 (559)
196 TIGR02100 glgX_debranch glycog 25.1 1.3E+02 0.0027 34.3 5.7 77 157-233 246-365 (688)
197 PRK10933 trehalose-6-phosphate 25.0 3.9E+02 0.0084 29.4 9.3 31 184-214 173-203 (551)
198 KOG2672 Lipoate synthase [Coen 24.7 1E+02 0.0022 31.1 4.3 59 185-244 134-196 (360)
199 cd08567 GDPD_SpGDE_like Glycer 24.5 1.3E+02 0.0028 29.0 5.1 41 159-213 221-261 (263)
200 PLN02227 fructose-bisphosphate 24.5 1.2E+02 0.0026 31.8 4.8 57 159-215 131-192 (399)
201 PF13204 DUF4038: Protein of u 24.2 46 0.00099 33.4 1.8 144 92-246 15-188 (289)
202 PRK11059 regulatory protein Cs 24.1 1E+02 0.0022 34.3 4.8 72 157-241 534-609 (640)
203 cd02874 GH18_CFLE_spore_hydrol 24.0 2.1E+02 0.0046 28.5 6.7 73 158-231 47-129 (313)
204 cd08610 GDPD_GDE6 Glycerophosp 23.9 1.4E+02 0.0029 30.6 5.2 42 159-214 235-276 (316)
205 TIGR02403 trehalose_treC alpha 23.3 3.4E+02 0.0074 29.8 8.5 32 184-215 166-197 (543)
206 PRK04326 methionine synthase; 23.2 2.6E+02 0.0056 28.2 7.2 84 107-214 153-240 (330)
207 cd06547 GH85_ENGase Endo-beta- 23.1 1.5E+02 0.0033 30.5 5.4 75 159-233 49-133 (339)
208 cd08609 GDPD_GDE3 Glycerophosp 23.0 1.4E+02 0.003 30.5 5.0 41 159-213 235-275 (315)
209 PRK01060 endonuclease IV; Prov 22.8 6.3E+02 0.014 24.4 9.6 121 110-243 14-147 (281)
210 cd00019 AP2Ec AP endonuclease 22.8 7E+02 0.015 24.1 11.0 125 108-245 10-146 (279)
211 cd07943 DRE_TIM_HOA 4-hydroxy- 22.8 7.2E+02 0.016 24.2 11.0 100 105-237 138-243 (263)
212 cd08606 GDPD_YPL110cp_fungi Gl 22.7 1.5E+02 0.0033 29.2 5.2 43 159-213 235-277 (286)
213 PLN02905 beta-amylase 22.7 1.2E+02 0.0027 33.8 4.8 57 105-173 283-340 (702)
214 PRK09282 pyruvate carboxylase 22.6 7.5E+02 0.016 27.6 11.1 53 105-176 151-204 (592)
215 PRK06252 methylcobalamin:coenz 22.6 1.2E+02 0.0026 30.7 4.5 85 123-241 190-279 (339)
216 PRK09936 hypothetical protein; 22.4 1.8E+02 0.0038 29.5 5.5 62 103-181 33-99 (296)
217 PRK12331 oxaloacetate decarbox 22.1 8.9E+02 0.019 26.0 11.1 54 104-176 150-204 (448)
218 PRK06520 5-methyltetrahydropte 21.8 2.5E+02 0.0055 29.2 6.8 114 98-214 154-278 (368)
219 PRK09505 malS alpha-amylase; R 21.8 2.8E+02 0.0061 31.5 7.6 66 103-173 225-309 (683)
220 TIGR03551 F420_cofH 7,8-dideme 21.7 1.4E+02 0.0031 30.5 4.9 85 105-209 70-156 (343)
221 cd03307 Mta_CmuA_like MtaA_Cmu 21.3 2.7E+02 0.0058 28.1 6.8 85 123-241 181-270 (326)
222 KOG2900 Biotin synthase [Coenz 21.1 78 0.0017 31.4 2.6 55 106-174 118-172 (380)
223 cd08573 GDPD_GDE1 Glycerophosp 21.0 1.6E+02 0.0035 28.7 5.0 39 159-212 218-257 (258)
224 KOG2366 Alpha-D-galactosidase 21.0 29 0.00063 36.2 -0.3 142 200-364 37-192 (414)
225 PRK08255 salicylyl-CoA 5-hydro 20.8 3.4E+02 0.0074 31.1 8.2 102 103-211 539-658 (765)
226 PRK14040 oxaloacetate decarbox 20.7 6.9E+02 0.015 27.9 10.2 55 104-177 151-206 (593)
227 TIGR03315 Se_ygfK putative sel 20.3 90 0.0019 37.1 3.4 46 124-177 258-303 (1012)
228 PRK09856 fructoselysine 3-epim 20.3 5.5E+02 0.012 24.7 8.6 110 110-233 15-133 (275)
229 cd00945 Aldolase_Class_I Class 20.3 6.2E+02 0.013 22.6 8.5 85 107-213 64-151 (201)
230 PRK12581 oxaloacetate decarbox 20.1 9.1E+02 0.02 26.2 10.7 54 104-176 159-213 (468)
No 1
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=3.3e-107 Score=833.97 Aligned_cols=416 Identities=80% Similarity=1.359 Sum_probs=382.0
Q ss_pred eeehhhcccccccccccccccccceEEEEecchhhHHHHHHHhhcccccccccCCCCCCCceEEechhhhCcCCCHHHHH
Q 012852 32 FALVLSLIIDVGFAGRVVVPLLQSYEKASYSRGFSRNFGKIFDTSNYGILQLNNGLASTPQMGWNSWNFFACNISETIIK 111 (455)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~pP~gwnSW~~~~~~i~e~~i~ 111 (455)
+.|+++.+.|+..+.........+. -++.+-..+.........++|+++++||||||||+.|+|+|||+.|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ngla~tPpmGWnSWn~~~~~i~E~~i~ 83 (427)
T PLN02229 12 LLLSLSVLVSQSIAGRVKAPLLQSV--------FSKSFNSIYDTSMYGRLQLNNGLARTPQMGWNSWNFFACNINETVIK 83 (427)
T ss_pred HHHHHHhhcchhhhhhhcccccccc--------chhhhhhhhhhhhhhhhhccCCccCCCCceEEchhhhCcccCHHHHH
Confidence 4455666688887777766333332 23455555555444556678999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccCCCCcccc
Q 012852 112 ETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLF 191 (455)
Q Consensus 112 ~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~ 191 (455)
++||++++.||+++||+||+|||||+...||++|+|++|++|||+|||+|+||||++|||||||.++|+.+|..+||+++
T Consensus 84 ~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~g 163 (427)
T PLN02229 84 ETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGSLF 163 (427)
T ss_pred HHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccCCCCCCcc
Confidence 99999999999999999999999999878999999999999999999999999999999999999999999999999999
Q ss_pred cHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCCh
Q 012852 192 HEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTW 271 (455)
Q Consensus 192 ~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W 271 (455)
|+++++++|++|||||||+|+|+.....+.++|..|++||+++||||+||+|+||...|+.|..+++|+||+++||.+.|
T Consensus 164 ~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W 243 (427)
T PLN02229 164 HEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTW 243 (427)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCCCHHHHHHhhcCeeeccCCccccc
Confidence 99999999999999999999998877778899999999999999999999999999889999999999999999999999
Q ss_pred hHHHHHHHhhcccccccCCCCcCCCCccccCCCCCCHHHHHHHHHHHHHHhCceeecCCCCCCCHHHHHhhccHhHHhhc
Q 012852 272 ASMTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVN 351 (455)
Q Consensus 272 ~~~~~~~~~~~~~~~~~g~g~~nDpDmL~vg~~~lT~~E~rt~~slwa~~gsPL~is~Dl~~l~~~~~~lL~N~e~iain 351 (455)
+++.++++.+..|+.+++||+|||||||+||+.+||.+|+||||+||||++|||++|+||+++++++++||+|+||||||
T Consensus 244 ~sv~~i~~~~~~~~~~agPG~wnDpDML~vGn~glT~~E~rthfsLWai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAIN 323 (427)
T PLN02229 244 ASMTTIADLNNKWAAYAGPGGWNDPDMLEVGNGGMTYEEYRGHFSIWALMKAPLLIGCDVRNMTAETMEILSNKEVIAVN 323 (427)
T ss_pred ccHHHHHHHHHHHHhhcCCCCCCCCCeeeeCCCCCCHHHHHHHHHHHHHHhCceeecCCcccCCHHHHHHhcCHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEeeecCCCCceeEEEEEcCCCcEEEEEEecCCCceeEEEEceecCCCCCCceEEEEccCCccccccccceE
Q 012852 352 QDPLGVQGRKVYVSGTDNCLQVWVGPLSGHRLVVALWNRCPKAETITAQWDALGLESSTKVSVRDLWQHKQVTGDAVSSF 431 (455)
Q Consensus 352 Qd~lG~~~r~v~~~~~~~~~~vw~~~l~dg~~avalfN~~~~~~~iti~l~~LGL~~~~~~~vrDlW~g~~~~g~~~~~l 431 (455)
||++|++++++...+.+++.+||.+++++|+.||++||+++++++++++|++|||.+...|+|||||+|+++.+..+++|
T Consensus 324 QD~lG~qg~~v~~~~~~~~~~vW~~~L~~g~~aValfN~~~~~~~v~v~~~~lGl~~~~~~~VrDLW~~~dlg~~~~~~~ 403 (427)
T PLN02229 324 QDPLGVQGRKIQANGKNGCQQVWAGPLSGDRLVVALWNRCSEPATITASWDVIGLESSISVSVRDLWKHKDLSENVVGSF 403 (427)
T ss_pred ccccccCcEEEEecCCCCceEEEEEECCCCCEEEEEEeCCCCCEEEEEEHHHcCCCCCCceEEEECCCCCccCccccceE
Confidence 99999999999876544558999999999999999999999999999999999999877799999999999833567899
Q ss_pred EEEEcCCCEEEEEEEeCCccCCCC
Q 012852 432 GAQVDAHDCQMYIFTPRTVTRSVI 455 (455)
Q Consensus 432 ~~~L~pH~~~ll~ltp~~~~~~~~ 455 (455)
+++|+||+|+||||+|.+.++|.+
T Consensus 404 ~~~v~~Hg~~l~rl~~~~~~~~~~ 427 (427)
T PLN02229 404 GAQVDAHDCHMYIFTPQTVSHSDV 427 (427)
T ss_pred EEEECCCeEEEEEEeccccccccC
Confidence 999999999999999999998863
No 2
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=3.6e-103 Score=799.28 Aligned_cols=364 Identities=66% Similarity=1.190 Sum_probs=350.3
Q ss_pred ccccCCCCCCCceEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHH
Q 012852 81 LQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKA 160 (455)
Q Consensus 81 ~~~~~~~~~~pP~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~ 160 (455)
..+.++++++||||||||+.|+|+|||+.|+++|++|++.||+++||+||+|||||+...||++|+|+||++|||+||++
T Consensus 22 ~~~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~ 101 (386)
T PLN02808 22 NLLDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKA 101 (386)
T ss_pred hcccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHH
Confidence 34578899999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHhcCCeEEEEecCCccccC-CCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCee
Q 012852 161 LADYVHGKGLKLGIYSDAGVFTCQ-VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIF 239 (455)
Q Consensus 161 l~~~v~~~G~k~Glw~~pg~~~c~-~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~ 239 (455)
|+||||++|||||||.++|..+|. .+||+++|+++++++|++|||||||+|+|+.....+.++|..|++||+++||||+
T Consensus 102 lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~ 181 (386)
T PLN02808 102 LADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIF 181 (386)
T ss_pred HHHHHHHCCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeE
Confidence 999999999999999999999995 5899999999999999999999999999988766778899999999999999999
Q ss_pred EeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHHHhhcccccccCCCCcCCCCccccCCCCCCHHHHHHHHHHHH
Q 012852 240 YSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWA 319 (455)
Q Consensus 240 ~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~~~~~~~~~~~g~g~~nDpDmL~vg~~~lT~~E~rt~~slwa 319 (455)
|++|+||...|..|..+++|+||++.||.+.|+++.++++.+..++.+++||+|||||||+||+++||.+|+||||+|||
T Consensus 182 ~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~~agPG~wnDpDML~vGn~glt~~E~rthfsLWa 261 (386)
T PLN02808 182 FSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMTSRADQNDRWASYARPGGWNDPDMLEVGNGGMTTEEYRSHFSIWA 261 (386)
T ss_pred EEecCCCCCCHHHHHHhhcCcccccCCcccchhhHHHHHHhhhhhHhhcCCCCCCCCCeeeECCCCCCHHHHHHHHHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCceeecCCCCCCCHHHHHhhccHhHHhhccCCCCCccEEeeecCCCCceeEEEEEcCCCcEEEEEEecCCCceeEEE
Q 012852 320 LMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKVYVSGTDNCLQVWVGPLSGHRLVVALWNRCPKAETITA 399 (455)
Q Consensus 320 ~~gsPL~is~Dl~~l~~~~~~lL~N~e~iainQd~lG~~~r~v~~~~~~~~~~vw~~~l~dg~~avalfN~~~~~~~iti 399 (455)
|++|||++|+||++++++.++||+|+|+||||||++|.++++|..+++ .+||+++|++|+.||++||++++++++++
T Consensus 262 m~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~~~~v~~~~~---~~vW~k~L~~g~~aVal~N~~~~~~~~~~ 338 (386)
T PLN02808 262 LAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQGKKVKKDGD---LEVWAGPLSKKRVAVVLWNRGSSRATITA 338 (386)
T ss_pred HHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccCcEEEEecCC---eEEEEEECCCCCEEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999999999999999999987665 99999999999999999999999999999
Q ss_pred EceecCCCCCCceEEEEccCCccccccccceEEEEEcCCCEEEEEEEeC
Q 012852 400 QWDALGLESSTKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMYIFTPR 448 (455)
Q Consensus 400 ~l~~LGL~~~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll~ltp~ 448 (455)
+|++|||.....|+|||||+|+++ +.++++++++|+||+|+||||+|.
T Consensus 339 ~~~~lgl~~~~~~~vrDlWs~~~~-g~~~~~~~~~v~pHg~~~~rlt~~ 386 (386)
T PLN02808 339 RWSDIGLNSSAVVNARDLWAHSTQ-SSVKGQLSALVESHACKMYVLTPR 386 (386)
T ss_pred EHHHhCCCCCCceEEEECCCCCcc-CcccceEEEEECCceEEEEEEeCC
Confidence 999999987678999999999998 788899999999999999999974
No 3
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=5.9e-103 Score=799.48 Aligned_cols=366 Identities=64% Similarity=1.126 Sum_probs=350.2
Q ss_pred ccccCCCCCCCceEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHH
Q 012852 81 LQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKA 160 (455)
Q Consensus 81 ~~~~~~~~~~pP~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~ 160 (455)
..+.|+++++||||||||+.|+|+|||+.++++|+++++.||+++||+||+|||||+...||++|+|++|++|||+|||+
T Consensus 46 ~~~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ 125 (412)
T PLN02692 46 NLLANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKA 125 (412)
T ss_pred hcccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHH
Confidence 44578999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHhcCCeEEEEecCCccccC-CCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCee
Q 012852 161 LADYVHGKGLKLGIYSDAGVFTCQ-VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIF 239 (455)
Q Consensus 161 l~~~v~~~G~k~Glw~~pg~~~c~-~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~ 239 (455)
|+||||++|||||||.++|..+|. ++||+++|++.++++|++|||||||+|+|+.....+.++|..|++||+++||||+
T Consensus 126 ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~ 205 (412)
T PLN02692 126 LADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIF 205 (412)
T ss_pred HHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCCeE
Confidence 999999999999999999999995 5899999999999999999999999999987766678999999999999999999
Q ss_pred EeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHHHhhcccccccCCCCcCCCCccccCCCCCCHHHHHHHHHHHH
Q 012852 240 YSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWA 319 (455)
Q Consensus 240 ~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~~~~~~~~~~~g~g~~nDpDmL~vg~~~lT~~E~rt~~slwa 319 (455)
||+|+||...|+.|..+++|+||+++||.+.|+++.++++.+..++.+++||+|||||||+||+++||.+|+|+||||||
T Consensus 206 ~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~~~~~~~~~~~~agPG~wnDpDML~VGn~glT~~E~rThfsLWa 285 (412)
T PLN02692 206 FSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSMISRADMNEVYAELARPGGWNDPDMLEVGNGGMTKDEYIVHFSIWA 285 (412)
T ss_pred EEecCCCcCChhhhhhhcCCccccccccccchHhHHHHHHHHHHHhhccCCCCCCCCCeEeECCCCCCHHHHHHHHHHHH
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCceeecCCCCCCCHHHHHhhccHhHHhhccCCCCCccEEeeecCCCCceeEEEEEcCCCcEEEEEEecCCCceeEEE
Q 012852 320 LMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKVYVSGTDNCLQVWVGPLSGHRLVVALWNRCPKAETITA 399 (455)
Q Consensus 320 ~~gsPL~is~Dl~~l~~~~~~lL~N~e~iainQd~lG~~~r~v~~~~~~~~~~vw~~~l~dg~~avalfN~~~~~~~iti 399 (455)
|++|||++|+||+++++++++||+|+|+||||||++|.|++++...++ .+||+++|++|+.||++||+++.++++++
T Consensus 286 i~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~~~v~~~~~---~~vW~k~l~~g~~aVal~N~~~~~~~i~~ 362 (412)
T PLN02692 286 ISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQAKKVRMEGD---LEIWAGPLSGYRVALLLLNRGPWRNSITA 362 (412)
T ss_pred HHhCcceecCCcccCCHHHHHHhcCHHHhhhccCccccCcEEEEecCC---eEEEEEECCCCCEEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999999999999999999987665 99999999999999999999999999999
Q ss_pred EceecCCCCCCceEEEEccCCccccccccceEEEEEcCCCEEEEEEEeCC
Q 012852 400 QWDALGLESSTKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMYIFTPRT 449 (455)
Q Consensus 400 ~l~~LGL~~~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll~ltp~~ 449 (455)
+|++|||..+..++|||||+|+++....+++++++|+||+|+||||+|.+
T Consensus 363 ~~~~lgl~~~~~~~vrDLW~~~~~g~~~~~~~~~~v~~Hg~~l~rl~~~~ 412 (412)
T PLN02692 363 NWDDIGIPANSIVEARDLWEHKTLKQHFVGNLTATVDSHACKMYILKPIS 412 (412)
T ss_pred eHHHhCCCCCCceEEEECCCCCccCccccceEEEEECCceEEEEEEecCC
Confidence 99999998877899999999999832578899999999999999999864
No 4
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-88 Score=669.04 Aligned_cols=372 Identities=56% Similarity=0.971 Sum_probs=349.7
Q ss_pred cccccccccCCCCCCCceEEechhhhCcCCC----------HHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCC
Q 012852 76 SNYGILQLNNGLASTPQMGWNSWNFFACNIS----------ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG 145 (455)
Q Consensus 76 ~~~~~~~~~~~~~~~pP~gwnSW~~~~~~i~----------e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G 145 (455)
.......+.||++++|||||+||+.|.|+++ |..++++||+|++.|++++||+||+|||||....||.+|
T Consensus 18 ~~~~~~~l~NGLg~tP~MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~Rd~~g 97 (414)
T KOG2366|consen 18 SVKGRMSLNNGLGRTPQMGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYINIDDCWSEVTRDSDG 97 (414)
T ss_pred hhhhheeeccccccCCCcccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhccCCcc
Confidence 3334677899999999999999999999888 999999999999999999999999999999998899999
Q ss_pred CcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhH
Q 012852 146 QLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYP 225 (455)
Q Consensus 146 ~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~ 225 (455)
++++|+++||+|++.|++|+|++|+|||||.+.|..||.++||++.|++.++++|++|||||+|+|.|+.......++|.
T Consensus 98 rLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~PGS~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~~~Yp 177 (414)
T KOG2366|consen 98 RLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAGYPGSLGHEESDAKTFADWGVDYLKLDGCFNNLITMPEGYP 177 (414)
T ss_pred ccccChhhcccchhhhhhchhhcCCceeeeeccCchhhccCCcccchhhhhhhhhHhhCCcEEeccccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHhcCCCeeEeeCCCCCCChhhh-------hhhccCeeeecCCCCCChhHHHHHHH----hhcccccccCCCCcC
Q 012852 226 PMRDALNETGCSIFYSLCEWGVDDPALW-------AGKVGNSWRTTGDINDTWASMTSIAD----INDKWASYAGPGGWN 294 (455)
Q Consensus 226 ~m~~AL~~~G~~i~~~~c~~g~~~p~~w-------~~~~~~~~Ris~Di~~~W~~~~~~~~----~~~~~~~~~g~g~~n 294 (455)
.|++||+++||||++++|+||...++.| ...++|.||+.+||.++|.++..+++ .+..+.+++||++||
T Consensus 178 ~ms~aLN~tGrpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~~~nqd~~~~~agPg~WN 257 (414)
T KOG2366|consen 178 IMSRALNNTGRPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTDDIQDTWKSVDSIIDYICWNQDRIAPLAGPGGWN 257 (414)
T ss_pred hHHHHHhccCCceEEEeccCcccccCccCCCcchhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhhhhccccCCCCCC
Confidence 9999999999999999999999888877 56789999999999999999999998 567888999999999
Q ss_pred CCCccccCCCCCCHHHHHHHHHHHHHHhCceeecCCCCCCCHHHHHhhccHhHHhhccCCCCCccEEeeecCCCCceeEE
Q 012852 295 DPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKVYVSGTDNCLQVW 374 (455)
Q Consensus 295 DpDmL~vg~~~lT~~E~rt~~slwa~~gsPL~is~Dl~~l~~~~~~lL~N~e~iainQd~lG~~~r~v~~~~~~~~~~vw 374 (455)
|||||++||.++|.+|+++||++||++++||++|+|++.++++.+++|+|+|+|+|||||+|.|+|.+...+++ .+||
T Consensus 258 DpDmL~iGN~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~nk~~IaiNQDplgiqGr~i~~e~~~--ievw 335 (414)
T KOG2366|consen 258 DPDMLEIGNGGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQNKEVIAINQDPLGIQGRKIVLEGDS--IEVW 335 (414)
T ss_pred ChhHhhcCCCCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcChhheeccCCccchhheeeeecCCc--eEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999854432 8999
Q ss_pred EEEcCCCcEEEEEEecC--CCceeEE-EEceecCCCCCCceEEEEccCCccccccccceEEEEEcCCCEEEEEEEeCC
Q 012852 375 VGPLSGHRLVVALWNRC--PKAETIT-AQWDALGLESSTKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMYIFTPRT 449 (455)
Q Consensus 375 ~~~l~dg~~avalfN~~--~~~~~it-i~l~~LGL~~~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll~ltp~~ 449 (455)
++|++..++||+++|+. ..++.|+ +.|..+|+.....|.++|||+|.......+++++++|+|||++||++.+..
T Consensus 336 ~~pls~~~~Ava~lNr~~~~~~~~It~~~l~~~g~~~~~~~~~~dLw~~~~~~~~~~~~i~~~V~phG~~l~~l~~~~ 413 (414)
T KOG2366|consen 336 SGPLSGKSVAVAFLNRRKTGIPARITAASLRELGLTNPASYTAHDLWSGVLGFLPTKDSISAQVNPHGVVLFVLHPSN 413 (414)
T ss_pred eeccCCceEEEEEecccCCCCCccccHHHHhhcCCCCCceeEeeehhhccccccccCCeEEEEECCCCcEEEEEEecc
Confidence 99999999999999998 4577888 889999998888999999999953336788999999999999999999865
No 5
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=5.6e-78 Score=632.17 Aligned_cols=363 Identities=27% Similarity=0.462 Sum_probs=304.9
Q ss_pred ccccCCCCCCCceEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCC-------------CCCCCCc
Q 012852 81 LQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPL-------------RDLKGQL 147 (455)
Q Consensus 81 ~~~~~~~~~~pP~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~-------------rd~~G~~ 147 (455)
....++++++||||||||+.|.++|||+.++++||. .+.||+++||+||+|||||+... ||.+|++
T Consensus 21 ~~~~~glA~TPPMGWNSWn~f~~~I~E~~i~~~Ad~-vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrL 99 (633)
T PLN02899 21 ASSQQQLASFPPRGWNSYDSFSWIVSEEEFLQNAEI-VSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRP 99 (633)
T ss_pred ccccCcccCCCCCCCcchhhhccCCCHHHHHHHHHH-HHcchHhhCCeEEEEccccccccccccccccccccccCCCCCC
Confidence 445778999999999999999999999999999995 57899999999999999998642 5778999
Q ss_pred ccCCCCCCC-----CHHHHHHHHHhcCCeEEEEecCCccccC--------------------------------------
Q 012852 148 VPDTITFPS-----GIKALADYVHGKGLKLGIYSDAGVFTCQ-------------------------------------- 184 (455)
Q Consensus 148 ~~d~~~FP~-----Gl~~l~~~v~~~G~k~Glw~~pg~~~c~-------------------------------------- 184 (455)
+||++|||+ |||+|+||||++|||||||.++|+.+|.
T Consensus 100 vPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w~ 179 (633)
T PLN02899 100 IPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAWM 179 (633)
T ss_pred ccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhccccccccccC
Confidence 999999998 9999999999999999999999865541
Q ss_pred ---------CCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEeeCCCCCCChhhhh-
Q 012852 185 ---------VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWA- 254 (455)
Q Consensus 185 ---------~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~c~~g~~~p~~w~- 254 (455)
+.|+.++|++.++++|++|||||||+|+|+.... ..+.|..|++||+++||||+|++|++.. .+..|.
T Consensus 180 ~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~~-~~~ey~~ms~AL~aTGRPIvySLspG~~-~~p~wa~ 257 (633)
T PLN02899 180 SHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDDF-DLEEITYVSEVLKELDRPIVYSLSPGTS-ATPTMAK 257 (633)
T ss_pred CCCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCCC-ChHHHHHHHHHHHHhCCCeEEEecCCcc-cchhhhh
Confidence 1234577888889999999999999999875433 3567999999999999999999997443 333454
Q ss_pred --hhccCeeeecCCCCCChhHHHHHHHhhccccccc-------CCCCcCCCCccccCC-------------CCCCHHHHH
Q 012852 255 --GKVGNSWRTTGDINDTWASMTSIADINDKWASYA-------GPGGWNDPDMLEVGN-------------GGMSYQEYR 312 (455)
Q Consensus 255 --~~~~~~~Ris~Di~~~W~~~~~~~~~~~~~~~~~-------g~g~~nDpDmL~vg~-------------~~lT~~E~r 312 (455)
.+++|+||+++|+++.|.++..+++....|+.++ ++++|||||||+||. .+||.+|+|
T Consensus 258 ~v~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~r 337 (633)
T PLN02899 258 EVSGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQK 337 (633)
T ss_pred hhhccCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCCCCCcceecccCCCccccccCccccCCCCHHHHH
Confidence 4668999999999999999998887655554322 235899999999992 259999999
Q ss_pred HHHHHHHHHhCceeecCCCCCCCHHHHHhhccHhHHhhccCCCCCccEEeee----------------------------
Q 012852 313 AHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKVYV---------------------------- 364 (455)
Q Consensus 313 t~~slwa~~gsPL~is~Dl~~l~~~~~~lL~N~e~iainQd~lG~~~r~v~~---------------------------- 364 (455)
|||+||||++||||+|+||++|++++++||+|+||||||||+++.+.-+...
T Consensus 338 ThfSLWAm~aSPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 417 (633)
T PLN02899 338 TQMTLWAMAKSPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNMEFPYVTSTRRNKKKSHSQHSTGVGKSDPSVLGLT 417 (633)
T ss_pred HHHHHHHHHhCchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCeeeeeEeccccccccccccccccCCCCCcceEEEE
Confidence 9999999999999999999999999999999999999999987633221000
Q ss_pred ------------------------------cC---------------C--------------------------------
Q 012852 365 ------------------------------SG---------------T-------------------------------- 367 (455)
Q Consensus 365 ------------------------------~~---------------~-------------------------------- 367 (455)
.. +
T Consensus 418 ~c~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 497 (633)
T PLN02899 418 SCKDSKANGWSIRSLDKDLDQICWNEKMGRRGEEPLCLYKTKPLLASDEEIIHNSEYQGKLHLLTSDGGELCLDASPKQK 497 (633)
T ss_pred ecCCCCCCceeEEecCCCcceeeccccccccCCCCeeeecccCCcccchhhhhcccccceEEeeeccccChhhccCCCCC
Confidence 00 0
Q ss_pred --------------------------C-----------------------CceeEEEEEcCCCcEEEEEEecCCCceeEE
Q 012852 368 --------------------------D-----------------------NCLQVWVGPLSGHRLVVALWNRCPKAETIT 398 (455)
Q Consensus 368 --------------------------~-----------------------~~~~vw~~~l~dg~~avalfN~~~~~~~it 398 (455)
+ +...+|+..-++|.+||+|||.+.+.++|+
T Consensus 498 ~~~~~~~~~~fs~c~~~~~q~w~l~~~g~l~~~~sglca~v~~~~~~~~~~~~r~w~a~g~~g~~y~~~fnl~~~~~~~~ 577 (633)
T PLN02899 498 RTSKDFRSGSFSPCRWDANQMWELNNNGTLISSYSGLCATVNSVVAEVATGGVRSWIATGRKGEIYVAFFNLNQEKTKIS 577 (633)
T ss_pred cCHhHhhccccCCCCCChhhceeeCCCCCEecCccccceEeeccccccccCceeEEEEcCCCccEEEEEEecCccceeEE
Confidence 0 001478888888999999999999999999
Q ss_pred EEceecC--CCC-----CCceEEEEccCCccccccccceEEEEEcCCCEEEEEEEe
Q 012852 399 AQWDALG--LES-----STKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMYIFTP 447 (455)
Q Consensus 399 i~l~~LG--L~~-----~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll~ltp 447 (455)
+.+++|. |++ ...++.+|||+++++ +.++++++..|+.|||+||.|+.
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~c~~~e~w~~~~~-~~~~~~~~~~v~~hg~~~~~~~c 632 (633)
T PLN02899 578 AKISDLAKALPGSKNLRTSSCTGHEVWSGKDF-GVIKDSISATVEIHGCALFVLHC 632 (633)
T ss_pred EEhhHhHhhccccccccccccceEEeccCCCc-ccccccEEEEeecCceEEEEEeC
Confidence 9999873 333 347889999999999 99999999999999999999974
No 6
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=1.2e-75 Score=591.15 Aligned_cols=265 Identities=34% Similarity=0.553 Sum_probs=236.0
Q ss_pred CceEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCC----------------CCCCCCCcccCCCCC
Q 012852 91 PQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSP----------------LRDLKGQLVPDTITF 154 (455)
Q Consensus 91 pP~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~----------------~rd~~G~~~~d~~~F 154 (455)
||||||||+.|.|+|||+.|+++|| ++++||+++||+||+|||||+.. .||.+|+++||++||
T Consensus 1 PpMGWNSWn~f~~~i~E~~i~~~Ad-~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rF 79 (357)
T PLN03231 1 PPRGWNSYDSFSFTISEEQFLENAK-IVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRW 79 (357)
T ss_pred CCCCccchhccCcCcCHHHHHHHHH-HHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccC
Confidence 8999999999999999999999999 77999999999999999999863 268889999999999
Q ss_pred CC-----CHHHHHHHHHhcCCeEEEEecCCccccC--------CCC----------------------------------
Q 012852 155 PS-----GIKALADYVHGKGLKLGIYSDAGVFTCQ--------VRP---------------------------------- 187 (455)
Q Consensus 155 P~-----Gl~~l~~~v~~~G~k~Glw~~pg~~~c~--------~~P---------------------------------- 187 (455)
|+ |||+|+||||++|||||||+.+|+.+|. +.|
T Consensus 80 Ps~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~ 159 (357)
T PLN03231 80 PSTTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSE 159 (357)
T ss_pred CCCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccch
Confidence 99 9999999999999999999999988874 333
Q ss_pred cccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEeeCCCCCCChhhhh---hhccCeeeec
Q 012852 188 GSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWA---GKVGNSWRTT 264 (455)
Q Consensus 188 g~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~c~~g~~~p~~w~---~~~~~~~Ris 264 (455)
|+++|++.++++|++|||||||+|+|+.......++|..|++||+++||||+||+|++.. .+..|. .+++|+||++
T Consensus 160 gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~g~~-~~~~~~~~i~~~an~WR~s 238 (357)
T PLN03231 160 GGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSPGDG-ATPGLAARVAQLVNMYRVT 238 (357)
T ss_pred hHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEecCCCC-CCchhhhhhhhhcCccccc
Confidence 445577888999999999999999997655556789999999999999999999997443 333343 4668999999
Q ss_pred CCCCCChhHHHHHHHhhcccc--------cccCCCCcCCCCccccC-------------CCCCCHHHHHHHHHHHHHHhC
Q 012852 265 GDINDTWASMTSIADINDKWA--------SYAGPGGWNDPDMLEVG-------------NGGMSYQEYRAHFSIWALMKA 323 (455)
Q Consensus 265 ~Di~~~W~~~~~~~~~~~~~~--------~~~g~g~~nDpDmL~vg-------------~~~lT~~E~rt~~slwa~~gs 323 (455)
+||++.|+++.++++.+..++ .+++||+|||||||+|| +++||.+|+|||||||||++|
T Consensus 239 ~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~agpG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWam~~S 318 (357)
T PLN03231 239 GDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVGGKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWAVAKS 318 (357)
T ss_pred CCcccchhhHHHHHHHHHHHhhhcccccccCCCCCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHHHHhC
Confidence 999999999988887654333 26789999999999999 357999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHhhccHhHHhhccCCCCC
Q 012852 324 PLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGV 357 (455)
Q Consensus 324 PL~is~Dl~~l~~~~~~lL~N~e~iainQd~lG~ 357 (455)
|||+|+||++|++++++||+|+||||||||++|.
T Consensus 319 PLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~ 352 (357)
T PLN03231 319 PLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGN 352 (357)
T ss_pred chhhcCCcccCCHHHHHHhcChHHheecCCcccc
Confidence 9999999999999999999999999999999985
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=100.00 E-value=6e-47 Score=390.11 Aligned_cols=335 Identities=25% Similarity=0.390 Sum_probs=213.5
Q ss_pred ccccceEEEEecc----hhhHHHHHHHhhcccccccccCCCCCCCceEEechhhhCcCCCHHHHHHHHHHHHHcCCcccC
Q 012852 51 PLLQSYEKASYSR----GFSRNFGKIFDTSNYGILQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELG 126 (455)
Q Consensus 51 ~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~pP~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G 126 (455)
||+||+++++||. |||++||+++|+++.+.. ...++|||+||||+++++++||+.|+++|+.+ +++|
T Consensus 1 sf~tP~~~~~~s~~gl~~~s~~~h~~~r~~~~~~~----~~~~~~pv~~nsW~~~~~d~~e~~i~~~a~~~-----~~~G 71 (394)
T PF02065_consen 1 SFQTPEAVASYSDQGLNGMSQRFHRFVRRHLLRPP----WRDKPPPVGWNSWEAYYFDITEEKILELADAA-----AELG 71 (394)
T ss_dssp EEE---EEEEEESBHHHHHHHHHHHHHHHHTSTTT----TTTSS--EEEESHHHHTTG--HHHHHHHHHHH-----HHHT
T ss_pred CccCCeEEEEEecCCHHHHHHHHHHHHHHhcCCCc----cCCCCCceEEEcccccCcCCCHHHHHHHHHHH-----HHhC
Confidence 6889999999995 788999999999987643 24688999999999999999999999999999 6799
Q ss_pred ceEEEecCCcCCCCCCCC----CCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCcc---------------------
Q 012852 127 YDHVNIDDCWSSPLRDLK----GQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVF--------------------- 181 (455)
Q Consensus 127 ~~~~~iDDGW~~~~rd~~----G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~--------------------- 181 (455)
|++||||||||.. |+.+ |+|.+|++|||+||++|+++||++|||||||++|++.
T Consensus 72 ~e~fviDDGW~~~-r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~ 150 (394)
T PF02065_consen 72 YEYFVIDDGWFGG-RDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRP 150 (394)
T ss_dssp -SEEEE-SSSBCT-ESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE
T ss_pred CEEEEEcCccccc-cCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCC
Confidence 9999999999985 5444 9999999999999999999999999999999999851
Q ss_pred ---------ccCCCCcccccHHh-HHHHHHhcCCcEEEeecCCCCCC--C-----ccchhH----HHHHHHHhcCCCeeE
Q 012852 182 ---------TCQVRPGSLFHEKD-DAPLFASWGVDYLKYDNCFNLGI--E-----PKKRYP----PMRDALNETGCSIFY 240 (455)
Q Consensus 182 ---------~c~~~Pg~~~~~~~-~~~~~~~wGidylK~D~~~~~~~--~-----~~~~y~----~m~~AL~~~G~~i~~ 240 (455)
.+.++|++++|+.+ ..+++++|||||||||||..... . ...+|. ++.++|++..+++++
T Consensus 151 ~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~i 230 (394)
T PF02065_consen 151 PTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLI 230 (394)
T ss_dssp -ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred CcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 12578899999865 45678999999999999975421 1 122333 488889999999999
Q ss_pred eeCCCCC--CChhhhhhhcc-CeeeecCCCCCChhHHHHHHHhhcccccccCCCCc-CCCCccccCCCCCCHHHHHHHHH
Q 012852 241 SLCEWGV--DDPALWAGKVG-NSWRTTGDINDTWASMTSIADINDKWASYAGPGGW-NDPDMLEVGNGGMSYQEYRAHFS 316 (455)
Q Consensus 241 ~~c~~g~--~~p~~w~~~~~-~~~Ris~Di~~~W~~~~~~~~~~~~~~~~~g~g~~-nDpDmL~vg~~~lT~~E~rt~~s 316 (455)
+.|++|. .++++. .+. ..| +| |.++.++++.... ......+..-.+.| .+.....++ ..++-+.|++++
T Consensus 231 E~CssGG~R~D~g~l--~~~~~~w-~S-D~tda~~R~~iq~-g~s~~~p~~~~~~hv~~~p~~~~~--r~~~l~~r~~~a 303 (394)
T PF02065_consen 231 ENCSSGGGRFDPGML--YYTPQSW-TS-DNTDALERLRIQY-GTSLFYPPEYMGAHVSASPNHQTG--RTTPLEFRAHVA 303 (394)
T ss_dssp EE-BTTBTTTSHHHH--CCSSEEE-SB-ST-SHHHHHHHHH-HHCTTSSGGGEEEEEEHSS-TTTH--HHGGHHHHHHHH
T ss_pred EeccCCCCccccchh--eeccccc-cC-CccchHHHhhhhc-ccccccCHHHhCCeEEeccccccC--Ccccceechhhh
Confidence 9999884 445433 343 445 44 6677766654332 22211111111212 121111111 124455565544
Q ss_pred HHHHHhCceeecCCCCCCCHHHHHhhccHhHHhhccCC--CCCccEEeeecCC-CCceeEEEEEcCCCcEEEEE-EecCC
Q 012852 317 IWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDP--LGVQGRKVYVSGT-DNCLQVWVGPLSGHRLVVAL-WNRCP 392 (455)
Q Consensus 317 lwa~~gsPL~is~Dl~~l~~~~~~lL~N~e~iainQd~--lG~~~r~v~~~~~-~~~~~vw~~~l~dg~~aval-fN~~~ 392 (455)
+| +.+.++.|+.++++++++.++. .||+-+.. +.+.++...-... +.....|.....|++.+|++ |....
T Consensus 304 ~~----g~~g~e~dl~~ls~~e~~~~~~--~ia~YK~~r~li~~G~~yrL~~p~~~~~~~~~~v~~d~~~av~~~~~~~~ 377 (394)
T PF02065_consen 304 MF----GRLGLELDLTKLSEEELAAVKE--QIAFYKSIRPLIQSGDFYRLDSPDDSNWDAWQVVSPDKSEAVVFVFRLLS 377 (394)
T ss_dssp TC----SEEEEESTGCGS-HHHHHHHHH--HHHHHHHCHHHHHHSEEEECCTTCCHCEEEEEEE-TTSSEEEEEEEETSS
T ss_pred hc----CCceeccCcccCCHHHHHHHHH--HHHHHHhHHHHhcCCcEEEecCCCccceEEEEEEcCCCCEEEEEEEEccc
Confidence 43 7888999999999999988764 44443221 1222333322211 22356787777788777765 55544
Q ss_pred CceeEEEEceecCCCC
Q 012852 393 KAETITAQWDALGLES 408 (455)
Q Consensus 393 ~~~~iti~l~~LGL~~ 408 (455)
........+.--||++
T Consensus 378 ~~~~~~~~l~l~gLd~ 393 (394)
T PF02065_consen 378 SPNPPPPRLRLRGLDP 393 (394)
T ss_dssp -SSEE-EEEEE-S--T
T ss_pred CCCCCCcceeCCCCCc
Confidence 4433333444346654
No 8
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-36 Score=307.60 Aligned_cols=305 Identities=17% Similarity=0.234 Sum_probs=212.4
Q ss_pred ceeEeeeeecccceeeeeeeehhhccccccccccccc--ccccceEEEEecc----hhhHHHHHHHhhcccccccccCCC
Q 012852 14 EKMRVGVAMSSMKKKRFVFALVLSLIIDVGFAGRVVV--PLLQSYEKASYSR----GFSRNFGKIFDTSNYGILQLNNGL 87 (455)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~ 87 (455)
.+.+..|+++...+.|+.. ++.|..+.|-+.+ ++.||+++++|++ |||+.+|.++|.++.+. +-.
T Consensus 218 gnf~~f~ev~q~~~~~Vq~-----g~l~~~~e~~l~~~e~f~tpe~lv~~edqgl~~lsq~y~~~v~~~i~~~----~~~ 288 (687)
T COG3345 218 GNFAAFVEVHQHPFFRVQD-----GILPFDGEWFLEEFESFVTPEVLVVLEDQGLNGLSQKYAELVRMEIVPR----PRV 288 (687)
T ss_pred cchhheeeeccCchhhhhh-----cccccCceEecccccccCCceEEEEEcCCCcchHHHHHHHHHHhhcCcc----ccc
Confidence 4567889999999999888 9999999999999 9999999999997 89999999999887752 225
Q ss_pred CCCCceEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCC----CCcccCCCCCCCCHHHHHH
Q 012852 88 ASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK----GQLVPDTITFPSGIKALAD 163 (455)
Q Consensus 88 ~~~pP~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~----G~~~~d~~~FP~Gl~~l~~ 163 (455)
.+++|||||||+++|+++|++.++++++.+ |+.|+|.|+||||||+ .|++| |||.+|.+|||+|+.+|++
T Consensus 289 ~kprPi~~nsWea~Yfd~t~e~ile~vk~a-----kk~gvE~FvlDDGwfg-~rndd~~slGDWlv~seKfPsgiE~li~ 362 (687)
T COG3345 289 KKPRPIGWNSWEAYYFDFTEEEILENVKEA-----KKFGVELFVLDDGWFG-GRNDDLKSLGDWLVNSEKFPSGIEELIE 362 (687)
T ss_pred CCCCcceeeceeeeeecCCHHHHHHHHHHH-----hhcCeEEEEEcccccc-ccCcchhhhhceecchhhccccHHHHHH
Confidence 688999999999999999999999999999 7799999999999999 45544 9999999999999999999
Q ss_pred HHHhcCCeEEEEecCCcccc------------------------------CCCCcccccH---------HhHHHHHH-hc
Q 012852 164 YVHGKGLKLGIYSDAGVFTC------------------------------QVRPGSLFHE---------KDDAPLFA-SW 203 (455)
Q Consensus 164 ~v~~~G~k~Glw~~pg~~~c------------------------------~~~Pg~~~~~---------~~~~~~~~-~w 203 (455)
.|++.||+||||++|+|..- ..+|.+..++ ...++.++ +|
T Consensus 363 ~I~e~Gl~fGIWlePemvs~dSdlfrqHPDWvvk~~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdm 442 (687)
T COG3345 363 AIAENGLIFGIWLEPEMVSEDSDLFRQHPDWVVKVNGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDM 442 (687)
T ss_pred HHHHcCCccceeecchhcccchHHHhhCCCeEEecCCccccccccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHh
Confidence 99999999999999987210 1234443333 34455566 66
Q ss_pred CCcEEEeecCCCCCCCccchhH--HHHHHHHhcCCCeeEeeCCCCCC--Chhhhhhhc-cCeeeecCCCCCChhHHHHHH
Q 012852 204 GVDYLKYDNCFNLGIEPKKRYP--PMRDALNETGCSIFYSLCEWGVD--DPALWAGKV-GNSWRTTGDINDTWASMTSIA 278 (455)
Q Consensus 204 GidylK~D~~~~~~~~~~~~y~--~m~~AL~~~G~~i~~~~c~~g~~--~p~~w~~~~-~~~~Ris~Di~~~W~~~~~~~ 278 (455)
|..++|+|+.+++... +++|. .+-+-|+.-...+.|.-|..|.. ++++. .+ .+.|- .|..|+.+++. +.
T Consensus 443 nr~l~klg~~~~~~l~-qqry~ly~l~~~l~~k~~~i~FeScasGg~r~d~gml--~~~~~~w~--Sd~~dAi~r~~-iq 516 (687)
T COG3345 443 NRELFKLGFLFWGALP-QQRYQLYRLFDQLNLKFPHILFESCASGGERIDKGML--EYSPQLWC--SDLTDAIGRLD-IQ 516 (687)
T ss_pred CcceeecCCCCCcccc-chHHHHHHHHHHhhhcCCCchhhhhcccccccchHHh--hhcccccC--CCCcchhhhcc-cc
Confidence 7777777777666443 44454 33445666677888998987652 33322 22 34553 34455544432 11
Q ss_pred HhhcccccccCCC-CcCCCCccccCCCCCCHHHHHHHHHHHHHHhCceeecCCCCCCCHHHHHhhccH
Q 012852 279 DINDKWASYAGPG-GWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNK 345 (455)
Q Consensus 279 ~~~~~~~~~~g~g-~~nDpDmL~vg~~~lT~~E~rt~~slwa~~gsPL~is~Dl~~l~~~~~~lL~N~ 345 (455)
.......+....| |..+-....+ ..||.-|.|-.+++...+|- --|+..++++.++..++.
T Consensus 517 rg~s~~~P~~~mGaHi~~~p~h~~--~rm~~l~~rg~~a~~g~~g~----elD~~~lsdeek~~~akq 578 (687)
T COG3345 517 RGGSYTYPPESMGAHISAVPNHQA--RRMTSLETRGLVAHFGFWGY----ELDCTILSDEEKDLTAKQ 578 (687)
T ss_pred ccCcccCChHHhhhhccCCCcHHH--hhhhhhhhhhHHHHhhhhcc----CCCcccCCHHHHHHHHHH
Confidence 1111111100111 1111111111 23666676655555544443 337778888877776654
No 9
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.94 E-value=8e-25 Score=234.99 Aligned_cols=350 Identities=16% Similarity=0.163 Sum_probs=227.1
Q ss_pred CCCCc-----eEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCC----------------CC
Q 012852 88 ASTPQ-----MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK----------------GQ 146 (455)
Q Consensus 88 ~~~pP-----~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~----------------G~ 146 (455)
.++.| +|||||++||.++||+.|++.++.|++.|.. .++++||||||....+.. -+
T Consensus 191 ~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip---~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~ 267 (775)
T PLN02219 191 KKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTP---PKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTG 267 (775)
T ss_pred cccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCC---ceEEEEccCccccccccccccccccccchhhhhhcc
Confidence 46778 9999999999999999999999999886654 699999999998543311 12
Q ss_pred cccCCC--------CCCCCHHHHHHHHHh-cCCe-EEEEecC---------C---c--ccc------------CC-----
Q 012852 147 LVPDTI--------TFPSGIKALADYVHG-KGLK-LGIYSDA---------G---V--FTC------------QV----- 185 (455)
Q Consensus 147 ~~~d~~--------~FP~Gl~~l~~~v~~-~G~k-~Glw~~p---------g---~--~~c------------~~----- 185 (455)
+..|++ .||.|||.+++.+|+ .|+| +|+|.+- + + +.+ .+
T Consensus 268 f~en~KF~~~~~~~~fp~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spg~~~~~pd~a 347 (775)
T PLN02219 268 IKENAKFQKNDQKNEQVSGLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSALAYPVQSPGVLGNQPDIV 347 (775)
T ss_pred ccccccccccccccCCCCcHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccccccccCCCccccCcchh
Confidence 234432 589999999999985 6887 5999863 1 1 000 00
Q ss_pred ------------CC-cccccHHhHHHHHHhcCCcEEEeecCCCCC-----C-CccchhHHHHHHHHhc------CCCeeE
Q 012852 186 ------------RP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLG-----I-EPKKRYPPMRDALNET------GCSIFY 240 (455)
Q Consensus 186 ------------~P-g~~~~~~~~~~~~~~wGidylK~D~~~~~~-----~-~~~~~y~~m~~AL~~~------G~~i~~ 240 (455)
+| .++.+++.....|++.|||+||+|....-. . ...+.-++..+||+++ +..++-
T Consensus 348 ~d~l~~~G~glV~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~~r~F~~ng~I~ 427 (775)
T PLN02219 348 MDSLSVHGLGLVNPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEASIARNFTDNGCIS 427 (775)
T ss_pred hhhhhhCCccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 12 246778888999999999999999976321 1 1123334556666543 444555
Q ss_pred eeCCCCCCChhhhhhhccCeeeecCCCCCChhHH-HHHHHhhcccccccCCCCcCCCCccccCCCCCCHHHHHHHHHHHH
Q 012852 241 SLCEWGVDDPALWAGKVGNSWRTTGDINDTWASM-TSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWA 319 (455)
Q Consensus 241 ~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~-~~~~~~~~~~~~~~g~g~~nDpDmL~vg~~~lT~~E~rt~~slwa 319 (455)
++|+. ....|..+...+.|+|+|..+.+... .-++-.++.-+-+.+...|+|.||++..++ -.+.|.+..|
T Consensus 428 CMsh~---~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSLllg~~v~PDWDMFqS~Hp-----~A~~HAaaRA 499 (775)
T PLN02219 428 CMCHN---TDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLHP-----AAEYHGAARA 499 (775)
T ss_pred ecccC---chhhhcccccceeecccccccCCCccCcchhhhhhhhhHHhccccccCchhceecCc-----cHHHHHHHHh
Confidence 44432 23466677788999999999877642 112222232334455567999999997664 5689999999
Q ss_pred HHhCceeecCCCCCCCHHHHHhhc--cHhHHhhccCCCCCccE-EeeecC---CCCceeEEEEEcCCCcEEEEEEecCCC
Q 012852 320 LMKAPLLIGCDVRNMTAETFEILS--NKEVIAVNQDPLGVQGR-KVYVSG---TDNCLQVWVGPLSGHRLVVALWNRCPK 393 (455)
Q Consensus 320 ~~gsPL~is~Dl~~l~~~~~~lL~--N~e~iainQd~lG~~~r-~v~~~~---~~~~~~vw~~~l~dg~~avalfN~~~~ 393 (455)
++|+|+++||-+.+-+-+.+.-|. +-.|++.... |.+-+ .++.+. +..-+.||... .+.-+|++||-...
T Consensus 500 iSGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~~p--g~PTrDclF~Dp~~dg~slLKIwn~n--~~~gviG~FNcqGa 575 (775)
T PLN02219 500 VGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQLP--GRPTRDCLFADPARDGTSLLKIWNVN--KCTGVVGVFNCQGA 575 (775)
T ss_pred hcCCcEEEecCCCCccHHHHHHhhCCCCceeccccC--CCcchhhhccccCCCCceEEEEEEcc--cccceEEEEeccCC
Confidence 999999999998887766665433 2233333321 22211 111111 11346788843 44569999997654
Q ss_pred c-----------------eeEEEEceec-CCC------CCCceEEEEccCCccccccccceEEEEEcCCCEEEEEEEeCC
Q 012852 394 A-----------------ETITAQWDAL-GLE------SSTKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMYIFTPRT 449 (455)
Q Consensus 394 ~-----------------~~iti~l~~L-GL~------~~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll~ltp~~ 449 (455)
. .+-.++..++ |+. -+..+.|+-.=+++-..-..+..++++|++-+..||-+.|.+
T Consensus 576 gW~~~~~~~~~~~~~~~~~s~~v~~~Dv~~i~~~a~~~w~~~~~vy~~~sg~l~~l~~~~~~~vtL~~~~~Ei~tv~Pv~ 655 (775)
T PLN02219 576 GWCKIEKKTRIHDTSPGTLTGSVCADDVDQIAQVAGEDWSGDSVVYAYKSGEVVRLPKGASIPVTLKVLEYELFHFCPLK 655 (775)
T ss_pred CCCchhhccccccCCCcceEEEEcchhccchhhccccCcCCCEEEEEeccCeEEEcCCCCceEEEecCCcEEEEEEeeEE
Confidence 3 2334555555 331 122344444444432111234568899999999999999998
Q ss_pred ccC
Q 012852 450 VTR 452 (455)
Q Consensus 450 ~~~ 452 (455)
...
T Consensus 656 ~~~ 658 (775)
T PLN02219 656 EIA 658 (775)
T ss_pred Eec
Confidence 664
No 10
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.94 E-value=1.7e-24 Score=232.86 Aligned_cols=349 Identities=17% Similarity=0.171 Sum_probs=224.3
Q ss_pred CCCCc-----eEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCC----------------C
Q 012852 88 ASTPQ-----MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG----------------Q 146 (455)
Q Consensus 88 ~~~pP-----~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G----------------~ 146 (455)
.++.| +|||||++||.++||+.|++.++.|++.|.. .++++||||||....|..+ +
T Consensus 195 ~K~~P~~ld~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p---~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~ 271 (758)
T PLN02355 195 RKKMPDMLNWFGWCTWDAFYTNVTAEGVKQGLESLEKGGVT---PKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTH 271 (758)
T ss_pred hccCCcccceeeEEehhHhhccCCHHHHHHHHHHHHhCCCC---ccEEEEeccccccccccccccccccccchhhhhhcc
Confidence 35677 9999999999999999999999999886654 6999999999985333222 2
Q ss_pred cccCCCCCC-------------CCHHHHHHHHHh-cCCe-EEEEecC---------Cc---c-------ccC--------
Q 012852 147 LVPDTITFP-------------SGIKALADYVHG-KGLK-LGIYSDA---------GV---F-------TCQ-------- 184 (455)
Q Consensus 147 ~~~d~~~FP-------------~Gl~~l~~~v~~-~G~k-~Glw~~p---------g~---~-------~c~-------- 184 (455)
+..|+ ||| .|||.+++.+|+ .|+| +|+|.+- +. . .+.
T Consensus 272 f~~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~ 350 (758)
T PLN02355 272 IKENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSN 350 (758)
T ss_pred ccccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCccccc
Confidence 23453 677 499999999986 6887 5999863 11 0 000
Q ss_pred ----------------CCCc-ccccHHhHHHHHHhcCCcEEEeecCCCCC-----C-CccchhHHHHHHHHhc------C
Q 012852 185 ----------------VRPG-SLFHEKDDAPLFASWGVDYLKYDNCFNLG-----I-EPKKRYPPMRDALNET------G 235 (455)
Q Consensus 185 ----------------~~Pg-~~~~~~~~~~~~~~wGidylK~D~~~~~~-----~-~~~~~y~~m~~AL~~~------G 235 (455)
-+|+ ++.+++.....|++.|||+||+|...... . ...+.-++..+||+++ +
T Consensus 351 ~~~~a~d~i~~~G~glv~Pe~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~~r~F~~ 430 (758)
T PLN02355 351 EPCDALESITTNGLGLVNPEKVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASIARNFPD 430 (758)
T ss_pred CcchhhhhcccCceeccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHHHHhCCC
Confidence 0122 46677888899999999999999975431 1 1223334566666543 4
Q ss_pred CCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHH-HHHHHhhcccccccCCCCcCCCCccccCCCCCCHHHHHHH
Q 012852 236 CSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASM-TSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAH 314 (455)
Q Consensus 236 ~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~-~~~~~~~~~~~~~~g~g~~nDpDmL~vg~~~lT~~E~rt~ 314 (455)
..++-++|+.+ ...|..+...+.|+|+|..+.+... .-++-.++.-+-+.+...|+|.||++..++ -.+.|
T Consensus 431 ngvI~CMs~~~---d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMF~S~hp-----~A~~H 502 (758)
T PLN02355 431 NGIISCMSHNT---DGLYSAKRTAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHP-----MAEYH 502 (758)
T ss_pred CceEEecccCc---hhhcccccceeeeeccccccCCCccCchhhhhhhhhhhhhccccccCcccceecCc-----cHHHH
Confidence 44544444322 2456667788999999999887653 112223333344556667999999997654 47799
Q ss_pred HHHHHHHhCceeecCCCCCCCHHHHHhhcc--HhHHhhccCCCCCccE-EeeecC---CCCceeEEEEEcCCCcEEEEEE
Q 012852 315 FSIWALMKAPLLIGCDVRNMTAETFEILSN--KEVIAVNQDPLGVQGR-KVYVSG---TDNCLQVWVGPLSGHRLVVALW 388 (455)
Q Consensus 315 ~slwa~~gsPL~is~Dl~~l~~~~~~lL~N--~e~iainQd~lG~~~r-~v~~~~---~~~~~~vw~~~l~dg~~avalf 388 (455)
.+..|++|+|+++||-+.+-+-+.+.-|.- -.|++.... |.+-| .++.+. +..-+.||. +..+.-+|++|
T Consensus 503 AaaRAisGGPIYvSD~PG~hdf~LLk~LvlpdGsIlR~~~p--g~PtrDclF~Dp~~dg~slLKIwn--~nk~sGviG~F 578 (758)
T PLN02355 503 AAARAVGGCAIYVSDKPGQHDFNLLKKLVLPDGSILRAKLP--GRPTRDCLFSDPARDGKSLLKIWN--LNEFTGVIGVF 578 (758)
T ss_pred HHHHhccCCcEEEecCCCCccHHHHHhhhCCCCceeccccC--CCcchhhhccccccCCceEEEEEE--cCCcccEEEEE
Confidence 999999999999999988877666654332 233333221 22221 111111 112356776 44566699999
Q ss_pred ecCCCc-----e----------e--EEEEceecCCC-------CCCceEEEEccCCccccccccceEEEEEcCCCEEEEE
Q 012852 389 NRCPKA-----E----------T--ITAQWDALGLE-------SSTKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMYI 444 (455)
Q Consensus 389 N~~~~~-----~----------~--iti~l~~LGL~-------~~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll~ 444 (455)
|-.... + + -.++++++.+. -...+-|+..=+++-+.-..+..++++|++-+..||.
T Consensus 579 NcqGagw~~~~~~~~~~~~~~~~l~~~v~~~Dv~~~~~~a~~~w~~~~~vy~~~sg~l~~~~~~~~~~vtL~~~~~eift 658 (758)
T PLN02355 579 NCQGAGWCRVGKKNLIHDEQPGTITGVIRAKDVDYLPKVADDEWTGDSIVYSHLGGEVVYLPKDASLPVTLKSREYEVFT 658 (758)
T ss_pred eccCCcccchhccccccCCCCceeEEEEccccccchhhccccCCCCCeEEEEecCceEEecCCCCceEEEecCCceEEEE
Confidence 965432 1 2 23555555211 1123445543333322112256688999999999999
Q ss_pred EEeCCccC
Q 012852 445 FTPRTVTR 452 (455)
Q Consensus 445 ltp~~~~~ 452 (455)
+.|++...
T Consensus 659 v~Pi~~~~ 666 (758)
T PLN02355 659 VVPVKELS 666 (758)
T ss_pred EeeEEEec
Confidence 99998654
No 11
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.92 E-value=7.7e-23 Score=219.62 Aligned_cols=341 Identities=18% Similarity=0.228 Sum_probs=218.5
Q ss_pred eEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCC------------C---cccCCCCCCC-
Q 012852 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG------------Q---LVPDTITFPS- 156 (455)
Q Consensus 93 ~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G------------~---~~~d~~~FP~- 156 (455)
+|||||++||.++|++.|++.++.+++.|.. .++++||||||....|... + +..+ .|||.
T Consensus 204 fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p---~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~ 279 (750)
T PLN02684 204 FGWCTWDAFYQEVTQEGVEAGLKSLAAGGTP---PKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKK 279 (750)
T ss_pred eeEEEhhHhhccCCHHHHHHHHHHHHhCCCC---ceEEEEecccccccccccccccccccchhhhhhccCccc-cccccc
Confidence 7999999999999999999999999886654 6999999999985443210 2 2344 67874
Q ss_pred -----CHHHHHHHHH-hcCCe-EEEEecC---------Cc-----cc-----c----------C--------------CC
Q 012852 157 -----GIKALADYVH-GKGLK-LGIYSDA---------GV-----FT-----C----------Q--------------VR 186 (455)
Q Consensus 157 -----Gl~~l~~~v~-~~G~k-~Glw~~p---------g~-----~~-----c----------~--------------~~ 186 (455)
|||.+++.|| +.|+| +|+|.+- +. +. + + -+
T Consensus 280 ~~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l~~~g~glv~ 359 (750)
T PLN02684 280 DDPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVMTLQGLGLVN 359 (750)
T ss_pred cCCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCccccccccccCcccccC
Confidence 9999999998 66887 5999863 11 00 0 0 11
Q ss_pred Cc-ccccHHhHHHHHHhcCCcEEEeecCCCCC-----CC-ccchhHHHHHHHHhc------CCCeeEeeCCCCCCChhhh
Q 012852 187 PG-SLFHEKDDAPLFASWGVDYLKYDNCFNLG-----IE-PKKRYPPMRDALNET------GCSIFYSLCEWGVDDPALW 253 (455)
Q Consensus 187 Pg-~~~~~~~~~~~~~~wGidylK~D~~~~~~-----~~-~~~~y~~m~~AL~~~------G~~i~~~~c~~g~~~p~~w 253 (455)
|+ +..+++.....|++.|||+||+|....-. .. ..+.-++..+||+++ ++.++-++|+. ....|
T Consensus 360 P~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI~CMs~~---~d~i~ 436 (750)
T PLN02684 360 PKKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHN---TDALY 436 (750)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccC---chhhh
Confidence 21 46778888999999999999999976321 11 123334555666543 23344443332 22356
Q ss_pred hhhccCeeeecCCCCCChhHH-HHHHHhhcccccccCCCCcCCCCccccCCCCCCHHHHHHHHHHHHHHhCceeecCCCC
Q 012852 254 AGKVGNSWRTTGDINDTWASM-TSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVR 332 (455)
Q Consensus 254 ~~~~~~~~Ris~Di~~~W~~~-~~~~~~~~~~~~~~g~g~~nDpDmL~vg~~~lT~~E~rt~~slwa~~gsPL~is~Dl~ 332 (455)
..+...+.|+|+|..+.+... .-++-.++.-+-+.+...|+|.||++..++ -.+.|.+..|++|+|+++||.+.
T Consensus 437 ~sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMFqS~hp-----~A~~HAaaRAisGGPIYvSD~PG 511 (750)
T PLN02684 437 CSKQTAVVRASDDFYPRDPVSHTIHIAAVAYNSVFLGEFMQPDWDMFHSLHP-----AAEYHASARAISGGPLYVSDAPG 511 (750)
T ss_pred cccccceeeeccccccCCCccchhhhhhhhhhhhhhccccccCcccceecCc-----cHHHHHHHHhhcCCceEEecCCC
Confidence 777889999999999877542 122223333344555667999999987665 46899999999999999999888
Q ss_pred CCCHHHHHhhc--cHhHHhhccCCCCCccEEe----eecC---CCCceeEEEEEcCCCcEEEEEEecCCCceeEEEEcee
Q 012852 333 NMTAETFEILS--NKEVIAVNQDPLGVQGRKV----YVSG---TDNCLQVWVGPLSGHRLVVALWNRCPKAETITAQWDA 403 (455)
Q Consensus 333 ~l~~~~~~lL~--N~e~iainQd~lG~~~r~v----~~~~---~~~~~~vw~~~l~dg~~avalfN~~~~~~~iti~l~~ 403 (455)
+-+-+.+.-|. +-.|+.... +++|. +.+. +..-+.||... .+.-+|++||-....-.-.....+
T Consensus 512 ~Hdf~LLk~LvlpDGsIlR~~~-----pg~PTrDcLF~DP~~dg~slLKIwn~n--~~tGViG~FNcqGagw~~~~~~~~ 584 (750)
T PLN02684 512 KHNFELLKKLVLPDGSILRARL-----PGRPTRDCLFSDPARDGVSLLKIWNMN--KYTGVLGVYNCQGAAWSSTERKNI 584 (750)
T ss_pred CccHHHHHhhhCCCCccccccc-----CCccchhhhccCcccCCccEEEEEEec--CCCceEEEEeccCCccCccccccc
Confidence 87766665433 223333332 23333 2221 11346788765 445589999976532211111111
Q ss_pred c-CCCC---CCceEEEEc-----------cCCcccc----------ccccceEEEEEcCCCEEEEEEEeCCccC
Q 012852 404 L-GLES---STKVSVRDL-----------WQHKQVT----------GDAVSSFGAQVDAHDCQMYIFTPRTVTR 452 (455)
Q Consensus 404 L-GL~~---~~~~~vrDl-----------W~g~~~~----------g~~~~~l~~~L~pH~~~ll~ltp~~~~~ 452 (455)
. +..+ +...+.+|+ |+++... -..+..++++|++-+..||.+.|.+...
T Consensus 585 ~~~~~~~~~s~~v~~~Dv~~~~~~a~~~~w~~~~~vy~h~s~~l~~l~~~~~~~vtL~~~~~Ei~t~~Pv~~~~ 658 (750)
T PLN02684 585 FHQTKTDSLTGSIRGRDVHLIAEAATDPNWNGDCAVYCHSRGELITMPYNASLPVSLKVLEHEIFTVTPIKHLA 658 (750)
T ss_pred cCCCCCccceeeecccccchhhhhccCCCCCCCEEEEEecCCeEEecCCCCceEEEecCCcEEEEEEeeEEEec
Confidence 0 1100 112333344 6554321 0124568899999999999999988653
No 12
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.91 E-value=3.1e-22 Score=216.79 Aligned_cols=345 Identities=21% Similarity=0.261 Sum_probs=218.7
Q ss_pred eEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCC------------C-----Cc---c----
Q 012852 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK------------G-----QL---V---- 148 (455)
Q Consensus 93 ~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~------------G-----~~---~---- 148 (455)
+|||||++||.+++++.|++-++.+.+.|.. ..+++||||||...++.. | +| .
T Consensus 197 lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~k 273 (747)
T PF05691_consen 197 LGWCTWDAFYQDVTEEGILEGLKSLEEGGIP---PRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSK 273 (747)
T ss_pred hccccHHHhccccCHHHHHHHHHHHHhCCCC---ceEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhh
Confidence 7999999999999999999999999886654 589999999998544322 1 11 0
Q ss_pred --c-----CCCCCCCCHHHHHHHHHhc--CCe-EEEEecC---------C-cc----c---c------------------
Q 012852 149 --P-----DTITFPSGIKALADYVHGK--GLK-LGIYSDA---------G-VF----T---C------------------ 183 (455)
Q Consensus 149 --~-----d~~~FP~Gl~~l~~~v~~~--G~k-~Glw~~p---------g-~~----~---c------------------ 183 (455)
- .++.||.||+.+++.||++ |+| +|+|.+- . +. . +
T Consensus 274 F~~~~~~~~~~~~~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~ 353 (747)
T PF05691_consen 274 FRAYKSGKSPEAFPSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSI 353 (747)
T ss_pred hhhccCCCcccCCcccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCcccccccc
Confidence 1 1246999999999999987 887 6999863 1 00 0 0
Q ss_pred ------CCCC-cccccHHhHHHHHHhcCCcEEEeecCCCCCC------CccchhHHHHHHHHhc------CCCeeEeeCC
Q 012852 184 ------QVRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGI------EPKKRYPPMRDALNET------GCSIFYSLCE 244 (455)
Q Consensus 184 ------~~~P-g~~~~~~~~~~~~~~wGidylK~D~~~~~~~------~~~~~y~~m~~AL~~~------G~~i~~~~c~ 244 (455)
.-.| .++.+++.....|++.|||+||+|....... ...+.-+++.+||+++ |..++-++|.
T Consensus 354 ~~~g~glv~p~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r~F~~~~vI~CMsh 433 (747)
T PF05691_consen 354 VKGGLGLVDPEDAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVARHFSGNGVINCMSH 433 (747)
T ss_pred ccCcccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Confidence 0112 2466788888999999999999999764321 1122223455555432 3456655544
Q ss_pred CCCCChhhhh-hhccCeeeecCCCCCChhH----------HHHHHHhhcccccccCCCCcCCCCccccCCCCCCHHHHHH
Q 012852 245 WGVDDPALWA-GKVGNSWRTTGDINDTWAS----------MTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRA 313 (455)
Q Consensus 245 ~g~~~p~~w~-~~~~~~~Ris~Di~~~W~~----------~~~~~~~~~~~~~~~g~g~~nDpDmL~vg~~~lT~~E~rt 313 (455)
.+ ...|. .......|+|+|..+.+.. ...++ .++.-+-+.+...|+|.||++.-++ ..+.
T Consensus 434 ~~---~~l~~~~~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~-~nAyNsL~~g~~~~PDwDMF~S~h~-----~A~~ 504 (747)
T PF05691_consen 434 NP---DNLYHSTKQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIA-HNAYNSLLLGQFVWPDWDMFQSSHP-----AAEF 504 (747)
T ss_pred Cc---cchhcccccccceeccccccCCCCCCCccccchhhHHHHH-HHHHHHHHHHhhcCCCcccccccCc-----cHHH
Confidence 22 23454 4556789999999886542 22333 3332233445567899999987553 5778
Q ss_pred HHHHHHHHhCceeecCCCCCCCHHHHHh--hccHhHHhhccCCCCCccE-EeeecCC---CCceeEEEEEcCCCcEEEEE
Q 012852 314 HFSIWALMKAPLLIGCDVRNMTAETFEI--LSNKEVIAVNQDPLGVQGR-KVYVSGT---DNCLQVWVGPLSGHRLVVAL 387 (455)
Q Consensus 314 ~~slwa~~gsPL~is~Dl~~l~~~~~~l--L~N~e~iainQd~lG~~~r-~v~~~~~---~~~~~vw~~~l~dg~~aval 387 (455)
|.+..|++|+|++|||.+.+.+-+.++- +.+-.++..... |.+-+ .++.+.. ..-+.||...-. .-+|++
T Consensus 505 HAaaRaiSGGPVYiSD~pG~hd~~LLk~LvlpDG~ilR~~~p--g~Pt~d~Lf~dp~~d~~~lLKi~n~n~~--~gvig~ 580 (747)
T PF05691_consen 505 HAAARAISGGPVYISDKPGKHDFDLLKKLVLPDGSILRADHP--GRPTRDCLFEDPLRDGKSLLKIWNLNKF--TGVIGV 580 (747)
T ss_pred HHHHHhhcCCCEEEeeCCCCCCHHHHHHhhCCCCceeccccC--CCCChhhhcccCCCCCceeEEEEecCCc--cceEEE
Confidence 9999999999999999998877666553 334345544432 22222 1122211 123678875433 348999
Q ss_pred EecCCC---------------ceeEE--EEceecCC-C--------CCCceEEEEccCCcccccc-ccceEEEEEcCCCE
Q 012852 388 WNRCPK---------------AETIT--AQWDALGL-E--------SSTKVSVRDLWQHKQVTGD-AVSSFGAQVDAHDC 440 (455)
Q Consensus 388 fN~~~~---------------~~~it--i~l~~LGL-~--------~~~~~~vrDlW~g~~~~g~-~~~~l~~~L~pH~~ 440 (455)
||.... +.+++ +.-+++-. . ....+.|+..=+++=..-. -+.++.++|+|-+.
T Consensus 581 FN~qgagw~~~~~~~~~~~~~~~~~t~~v~~~Dv~~~~~~~~~~~~~~~~~avY~~~~~~l~~l~~k~~~~~vtL~~~~~ 660 (747)
T PF05691_consen 581 FNCQGAGWCREERKNKSHDECPGTLTGSVRPSDVEWISEVAGADDGWNGDFAVYSHRSGELVLLPPKSESLPVTLKPLEF 660 (747)
T ss_pred EecCCCcccchhhhccccCCCCcceEeeccccccceeccccccCcCCCccEEEEEcCCCeEEEecCCCCCceEEEcCcce
Confidence 997532 12233 22223211 1 1123455544444322112 14578999999999
Q ss_pred EEEEEEeCCccCC
Q 012852 441 QMYIFTPRTVTRS 453 (455)
Q Consensus 441 ~ll~ltp~~~~~~ 453 (455)
-||-++|++...+
T Consensus 661 El~tv~Pv~~~~~ 673 (747)
T PF05691_consen 661 ELFTVSPVKVLGG 673 (747)
T ss_pred EEEEEeeEEEecC
Confidence 9999999987654
No 13
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.91 E-value=1.6e-22 Score=217.47 Aligned_cols=344 Identities=17% Similarity=0.158 Sum_probs=214.7
Q ss_pred eEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCC-------------C--------CcccC-
Q 012852 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK-------------G--------QLVPD- 150 (455)
Q Consensus 93 ~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~-------------G--------~~~~d- 150 (455)
.|||||++||.++|++.|++-++.+.+.|.. ..+++||||||....+.+ | ++..|
T Consensus 215 fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip---~~~vIIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~~rL~~f~en~ 291 (777)
T PLN02711 215 FGWCTWDAFYLTVHPQGVWEGVKGLVDGGCP---PGLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEENY 291 (777)
T ss_pred ceEEehhHhcccCCHHHHHHHHHHHHhCCCC---ccEEEEcCCcccccccCcccccccccccccccchhhhhhccccccc
Confidence 6999999999999999999999999887665 589999999997432211 1 12334
Q ss_pred --------CCCCCCCHHHHHHHHHhc--CCe-EEEEecC---------Cc--------ccc-------------------
Q 012852 151 --------TITFPSGIKALADYVHGK--GLK-LGIYSDA---------GV--------FTC------------------- 183 (455)
Q Consensus 151 --------~~~FP~Gl~~l~~~v~~~--G~k-~Glw~~p---------g~--------~~c------------------- 183 (455)
+..||.|||.+++.||++ |+| +|+|.+- +. ..+
T Consensus 292 KF~~~~~~~~~~p~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~ 371 (777)
T PLN02711 292 KFRDYVSPKSLSNKGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIV 371 (777)
T ss_pred cccccccccCCCCCcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccc
Confidence 344677999999999984 687 5999863 11 000
Q ss_pred -----CCCC-cccccHHhHHHHHHhcCCcEEEeecCCCCC-----C-CccchhHHHHHHHHhc------CCCeeEeeCCC
Q 012852 184 -----QVRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLG-----I-EPKKRYPPMRDALNET------GCSIFYSLCEW 245 (455)
Q Consensus 184 -----~~~P-g~~~~~~~~~~~~~~wGidylK~D~~~~~~-----~-~~~~~y~~m~~AL~~~------G~~i~~~~c~~ 245 (455)
..+| .++.+++.....|++.|||+||+|...... . ...+.-++..+||+++ ++.++-++|..
T Consensus 372 ~~g~glv~Pe~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~F~~ng~I~CMs~~ 451 (777)
T PLN02711 372 NNGVGLVPPELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKHFNGNGVIASMEHC 451 (777)
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccC
Confidence 0112 246778888899999999999999875421 1 1122334556666532 34455444432
Q ss_pred CCCChh-hh-hhhccCeeeecCCCCCChhHH---------HHHHHhhcccccccCCCCcCCCCccccCCCCCCHHHHHHH
Q 012852 246 GVDDPA-LW-AGKVGNSWRTTGDINDTWASM---------TSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAH 314 (455)
Q Consensus 246 g~~~p~-~w-~~~~~~~~Ris~Di~~~W~~~---------~~~~~~~~~~~~~~g~g~~nDpDmL~vg~~~lT~~E~rt~ 314 (455)
+. .+ ..+....-|+|+|..+.=.+- ..++..+++-+-+.+...|+|.||++.-++ -.+.|
T Consensus 452 ----~d~~~~~tk~~av~R~SDDF~p~dP~sh~~g~~W~~~~Hi~~~AyNSLllg~~v~PDWDMF~S~Hp-----~A~~H 522 (777)
T PLN02711 452 ----NDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHP-----CAEFH 522 (777)
T ss_pred ----chhhhccCcccceeeecccccCCCCccccccccccccceeeeehhhhhhhcccccCCchhhhccCc-----hHHHH
Confidence 22 22 234456789999988532210 012222333344556667999999997664 67899
Q ss_pred HHHHHHHhCceeecCCCCCCCHHHHHhhc--cHhHHhhccCCCCCccEE-eeec---CCCCceeEEEEEcCCCcEEEEEE
Q 012852 315 FSIWALMKAPLLIGCDVRNMTAETFEILS--NKEVIAVNQDPLGVQGRK-VYVS---GTDNCLQVWVGPLSGHRLVVALW 388 (455)
Q Consensus 315 ~slwa~~gsPL~is~Dl~~l~~~~~~lL~--N~e~iainQd~lG~~~r~-v~~~---~~~~~~~vw~~~l~dg~~avalf 388 (455)
.+..|++|+|+++||-+.+-+-+.+.-|. +-.|++.... |.+.|- ++.+ .+..-+.||...- +.-++++|
T Consensus 523 AaaRAisGGPIYVSD~pG~Hdf~LLk~LvlpdGsIlR~~~p--g~PtrDcLF~DP~~dg~slLKIwn~nk--~tGviG~F 598 (777)
T PLN02711 523 AASRAISGGPIYVSDSVGKHNFPLLKRLVLPDGSILRCQYY--ALPTRDCLFEDPLHDGKTMLKIWNLNK--FTGVIGAF 598 (777)
T ss_pred HHHHhhcCCCEEEecCCCCccHHHHHhhhCCCCcEecccCC--CCccchhhccccccCCceEEEEEeecC--CcceEEEE
Confidence 99999999999999988877666555332 2233333321 222221 0111 0113366787553 33489999
Q ss_pred ecCCCc-----------------eeEEEEceecCCCCC---------CceEEEEccCCccccccccceEEEEEcCCCEEE
Q 012852 389 NRCPKA-----------------ETITAQWDALGLESS---------TKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQM 442 (455)
Q Consensus 389 N~~~~~-----------------~~iti~l~~LGL~~~---------~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~l 442 (455)
|-.... .+-.++.+|+..+.+ ..|.|+-.=+++-..-..+..++++|++-+..|
T Consensus 599 NcqgagW~~~~~~~~~~~~~~~~vt~~v~~~Dv~w~~~~~~~~~~~~~~y~vy~~~s~~l~~l~~~~~l~vtL~~~~~Ei 678 (777)
T PLN02711 599 NCQGGGWCRETRRNKCASQFSHTVTAKASPKDIEWNSGKSPISIEGVQVFAVYLFQSKKLVLSKPSENLEISLEPFNFEL 678 (777)
T ss_pred EecCCcccchhhhcccccCCCCceEEEEchHHhcccCCCCCcCccCceeEEEEEecCCeEEECCCCCceEEEecCcceEE
Confidence 974332 334456666633322 123344333443221223567999999999999
Q ss_pred EEEEeCCccC
Q 012852 443 YIFTPRTVTR 452 (455)
Q Consensus 443 l~ltp~~~~~ 452 (455)
|-+.|++...
T Consensus 679 ftv~Pv~~~~ 688 (777)
T PLN02711 679 ITVSPVTTLP 688 (777)
T ss_pred EEEeeeEEec
Confidence 9999987753
No 14
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.81 E-value=2.4e-18 Score=185.25 Aligned_cols=346 Identities=17% Similarity=0.174 Sum_probs=204.9
Q ss_pred eEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCC-----------------C---------
Q 012852 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG-----------------Q--------- 146 (455)
Q Consensus 93 ~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G-----------------~--------- 146 (455)
.|||||.+||.+++++.|.+-.+.+++-|..+ .+++||||||....|.++ +
T Consensus 224 FGWCTWDAFY~~V~p~GV~~Gv~~l~~gG~pp---rfvIIDDGWQsi~~d~~~~~~~~~~~~~~g~q~~~RL~~~~En~K 300 (865)
T PLN02982 224 FGWCTWDAFYLTVDPVGVWHGVKEFAEGGVPP---RFLIIDDGWQSINFDGDNPNEDAKNLVLGGTQMTARLYRFDECEK 300 (865)
T ss_pred ceEEeechhhcccCHHHHHHHHHHHhcCCCCc---cEEEEecchhhccccccCCchhhhhccccccchhhhhhcchhhhh
Confidence 69999999999999999999999998776654 899999999975433111 0
Q ss_pred ---------cccCC------------------------------------------------------------------
Q 012852 147 ---------LVPDT------------------------------------------------------------------ 151 (455)
Q Consensus 147 ---------~~~d~------------------------------------------------------------------ 151 (455)
..+|+
T Consensus 301 Frky~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 380 (865)
T PLN02982 301 FRNYKGGSMLGPDPPHFDPKKPKMLIYKAIEREHAEKARKKAIESGVTDLSEFDAKIKQLKKELDAMFDGEEKSVSSESE 380 (865)
T ss_pred hhccccccccCCCcccccccccchhhhcccchhhhhhcccccccccccccchhhhhhhhhhhhccccccccccccccccc
Confidence 00111
Q ss_pred -----CCCCCCHHHHHHHHHhc--CCe-EEEEecC---------Ccc-------cc------------------------
Q 012852 152 -----ITFPSGIKALADYVHGK--GLK-LGIYSDA---------GVF-------TC------------------------ 183 (455)
Q Consensus 152 -----~~FP~Gl~~l~~~v~~~--G~k-~Glw~~p---------g~~-------~c------------------------ 183 (455)
+.=|.|||.+++.||.+ |+| +++|.+- +.. .+
T Consensus 381 ~~~~~~~~~~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~g 460 (865)
T PLN02982 381 SSGSCKVSGSGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIG 460 (865)
T ss_pred cccccccCcccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCcee
Confidence 12235999999999875 465 5888853 210 00
Q ss_pred CCCCc-ccccHHhHHHHHHhcCCcEEEeecCCCCCC-----C-ccchhHHHHHHHH----hc--CCCeeEeeCCCCCCCh
Q 012852 184 QVRPG-SLFHEKDDAPLFASWGVDYLKYDNCFNLGI-----E-PKKRYPPMRDALN----ET--GCSIFYSLCEWGVDDP 250 (455)
Q Consensus 184 ~~~Pg-~~~~~~~~~~~~~~wGidylK~D~~~~~~~-----~-~~~~y~~m~~AL~----~~--G~~i~~~~c~~g~~~p 250 (455)
.-+|. +..+++.....|++.|||+||+|....... . ..+..++..+||. +. ++.++-++|+.+ .
T Consensus 461 lv~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~~~---~ 537 (865)
T PLN02982 461 LVHPSQAGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQCN---D 537 (865)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccCc---h
Confidence 01232 467888889999999999999998764211 1 1222234444443 32 333444433321 1
Q ss_pred hhh-hhhccCeeeecCCCCCC------hhHH---HHHHHhhcccccccCCCCcCCCCccccCCCCCCHHHHHHHHHHHHH
Q 012852 251 ALW-AGKVGNSWRTTGDINDT------WASM---TSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWAL 320 (455)
Q Consensus 251 ~~w-~~~~~~~~Ris~Di~~~------W~~~---~~~~~~~~~~~~~~g~g~~nDpDmL~vg~~~lT~~E~rt~~slwa~ 320 (455)
..| ..+...+-|+|+|..+. |... ..++..++.-+-+.|...|+|.||++..++ -.+.|.+..|+
T Consensus 538 ~~~~~tk~sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyNSLl~G~~v~PDWDMFqS~H~-----~A~fHAaaRAI 612 (865)
T PLN02982 538 FFFLGTKQISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYNSMWMGQIIQPDWDMFQSDHL-----CAEFHAGSRAI 612 (865)
T ss_pred hhhccCCcceeeeccccccCCCCCcCccccccccceeeeehhhhhHhhccccccCchhccccCc-----hHHHHHHHHhh
Confidence 233 23456677999998863 3211 012222222234556668999999987554 67899999999
Q ss_pred HhCceeecCCCCCCCHHHHHhhccH--hHHhhccCCCCCccEEe-eecC---CCCceeEEEEEcCCCcEEEEEEecCCC-
Q 012852 321 MKAPLLIGCDVRNMTAETFEILSNK--EVIAVNQDPLGVQGRKV-YVSG---TDNCLQVWVGPLSGHRLVVALWNRCPK- 393 (455)
Q Consensus 321 ~gsPL~is~Dl~~l~~~~~~lL~N~--e~iainQd~lG~~~r~v-~~~~---~~~~~~vw~~~l~dg~~avalfN~~~~- 393 (455)
+|+|+++||-+.+-+-+.+.=|.-+ .|++.... |.+-|-. +.+. ...-+.||-..--.| +|++||--+.
T Consensus 613 sGGPIYvSD~pG~Hdf~lLk~LvlpDG~IlR~~~p--g~PTrDcLF~DPl~DGks~LKIWN~Nk~~G--ViG~FNCQGag 688 (865)
T PLN02982 613 CGGPVYVSDSVGGHDFDLLKKLVFPDGTIPRCQHY--ALPTRDCLFKNPLFDKKTILKIWNFNKFGG--VIGAFNCQGAG 688 (865)
T ss_pred cCCCEEEeeCCCCccHHHHHhhhcCCCceeccCCC--CCCCcchhccCcccCCceEEEEEeccCcCc--eEEEEEeccCC
Confidence 9999999998887766655543322 23332221 2111111 1110 012255665332223 6777773221
Q ss_pred --------------cee--EEEEceecCCCC---------CCceEEEEccCCccccccc-cceEEEEEcCCCEEEEEEEe
Q 012852 394 --------------AET--ITAQWDALGLES---------STKVSVRDLWQHKQVTGDA-VSSFGAQVDAHDCQMYIFTP 447 (455)
Q Consensus 394 --------------~~~--iti~l~~LGL~~---------~~~~~vrDlW~g~~~~g~~-~~~l~~~L~pH~~~ll~ltp 447 (455)
+.+ -++..+|+.... ...+.|+..=+++-+.-.. ...++++|.+-...||.+.|
T Consensus 689 W~~~~~~~~~~~~~~~~vtg~v~~~Dve~~~~~~~a~~~~~~~~~vY~~~~~el~~~~~~~~~~~vtL~~~e~elftv~P 768 (865)
T PLN02982 689 WDPKEHRIKGYSECYKPVSGSVHVSDIEWDQKPEASQMGEAEEYAVYLNQAEELLLMTPKSEAIQITLQPSSFELFSFVP 768 (865)
T ss_pred CCchhccccccCCCCcceEEEEcHHHcccccccccccCCCcccEEEEEecCceEEEecCCCCcceEEeccceeEEEEEee
Confidence 222 334445553321 1234455533333221012 35689999999999999999
Q ss_pred CCccCC
Q 012852 448 RTVTRS 453 (455)
Q Consensus 448 ~~~~~~ 453 (455)
++...+
T Consensus 769 I~~~~~ 774 (865)
T PLN02982 769 VTKLGS 774 (865)
T ss_pred eEEccC
Confidence 987644
No 15
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.73 E-value=1.6e-16 Score=159.80 Aligned_cols=168 Identities=18% Similarity=0.370 Sum_probs=125.0
Q ss_pred CCCceEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc
Q 012852 89 STPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK 168 (455)
Q Consensus 89 ~~pP~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~ 168 (455)
-++|+ ||||+.+++.+|++.|+++|+.+++.|+ .++.|+||++|+. ..|+|+.|+++||+ ++.++++||++
T Consensus 12 ~~~p~-W~~W~~~~~~~s~~~v~~~~~~~~~~~i---P~d~i~iD~~w~~----~~g~f~~d~~~FPd-p~~mi~~l~~~ 82 (303)
T cd06592 12 FRSPI-WSTWARYKADINQETVLNYAQEIIDNGF---PNGQIEIDDNWET----CYGDFDFDPTKFPD-PKGMIDQLHDL 82 (303)
T ss_pred hCCCc-cCChhhhccCcCHHHHHHHHHHHHHcCC---CCCeEEeCCCccc----cCCccccChhhCCC-HHHHHHHHHHC
Confidence 44566 9999999999999999999999987554 4799999999986 36889999999998 99999999999
Q ss_pred CCeEEEEecCCcc--------------------------------cc----CCCCcccccHHhHHHHHH-hcCCcEEEee
Q 012852 169 GLKLGIYSDAGVF--------------------------------TC----QVRPGSLFHEKDDAPLFA-SWGVDYLKYD 211 (455)
Q Consensus 169 G~k~Glw~~pg~~--------------------------------~c----~~~Pg~~~~~~~~~~~~~-~wGidylK~D 211 (455)
|+|+++|+.|... .| .++|++++++...++.+. ++|||++|+|
T Consensus 83 G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D 162 (303)
T cd06592 83 GFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFD 162 (303)
T ss_pred CCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 9999999999421 01 467888888877776655 9999999999
Q ss_pred cCCCCCCC----------ccchhH-HHHHHHHhcCCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHH
Q 012852 212 NCFNLGIE----------PKKRYP-PMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASM 274 (455)
Q Consensus 212 ~~~~~~~~----------~~~~y~-~m~~AL~~~G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~ 274 (455)
++...... ....|. .+.++..+.+ +++++=+.|... ..++-.| ++|...+|+..
T Consensus 163 ~~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~~~~-~~~~~Rsg~~g~------~~~~~~w--~GD~~s~W~~~ 227 (303)
T cd06592 163 AGEASYLPQDYVTEDPLLNPDEYTRLYAEMVAEFG-DLIEVRAGWRSQ------GLPLFVR--MMDKDSSWGGD 227 (303)
T ss_pred CCCcccCCcccccCCcccCHHHHHHHHHHHHHhhc-cceEEEeeeecC------CCCeeEE--cCCCCCCCCCC
Confidence 98753110 112232 4455544444 566654433211 1234455 77999999875
No 16
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.45 E-value=2.6e-12 Score=129.50 Aligned_cols=169 Identities=20% Similarity=0.287 Sum_probs=121.5
Q ss_pred hhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEec
Q 012852 98 WNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSD 177 (455)
Q Consensus 98 W~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~ 177 (455)
|..-+...+++.+++.|+.+++.|+ .++.|+||++|+.. ...|+|..|+++||+ ++.+++.+|++|+++++|+.
T Consensus 14 ~~~~~~y~~~~~v~~~~~~~~~~~i---P~d~~~lD~~w~~~--~~~~~f~~d~~~FPd-~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 14 WLSRSFYYDEEEVNEFADGMRERNL---PCDVIHLDCFWMKE--FQWCDFEFDPDRFPD-PEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred HHHcccCCCHHHHHHHHHHHHHcCC---CeeEEEEecccccC--CcceeeEECcccCCC-HHHHHHHHHHCCCeEEEEec
Confidence 3344445899999999999976443 37889999999852 223589999999998 99999999999999999999
Q ss_pred CCccc--------------------------------c---CCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCC----
Q 012852 178 AGVFT--------------------------------C---QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI---- 218 (455)
Q Consensus 178 pg~~~--------------------------------c---~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~---- 218 (455)
|.... + .++|++.+++....+.+.++|||++|+|++.....
T Consensus 88 P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~p~~~~~ 167 (308)
T cd06593 88 PYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERIPTDVVY 167 (308)
T ss_pred CCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCCCccccc
Confidence 85310 0 36788889998888888899999999999864211
Q ss_pred ----Cc---cchh-----HHHHHHHHhc-C--CCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHHHh
Q 012852 219 ----EP---KKRY-----PPMRDALNET-G--CSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADI 280 (455)
Q Consensus 219 ----~~---~~~y-----~~m~~AL~~~-G--~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~~~ 280 (455)
.+ ...| +.+.+++++. + |+++++-+.+... ..|+-.| ++|...+|+.+...+..
T Consensus 168 ~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gs------qry~~~w--~GD~~s~w~~L~~~i~~ 236 (308)
T cd06593 168 YDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGS------QKYPVHW--GGDCESTFEGMAESLRG 236 (308)
T ss_pred cCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc------ccCCCEE--CCCcccCHHHHHHHHHH
Confidence 11 1222 2344555543 3 4777764443211 2455567 88999999987766543
No 17
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=99.30 E-value=6.6e-11 Score=116.92 Aligned_cols=159 Identities=21% Similarity=0.260 Sum_probs=115.9
Q ss_pred chhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCc--ccCCCCCCCCHHHHHHHHHhcCCeEEE
Q 012852 97 SWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL--VPDTITFPSGIKALADYVHGKGLKLGI 174 (455)
Q Consensus 97 SW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~--~~d~~~FP~Gl~~l~~~v~~~G~k~Gl 174 (455)
.|...+...+++.+++.|+.+.+.++ .++.|+||++|+.. .|++ ..|+++||+ ++.+++++|++|+|+.+
T Consensus 13 ~~~~~~~~~~~~~v~~~~~~~~~~~i---P~d~~~lD~~~~~~----~~~f~~~~d~~~Fpd-p~~~i~~l~~~g~~~~~ 84 (265)
T cd06589 13 YWLSRYGYGDQDKVLEVIDGMRENDI---PLDGFVLDDDYTDG----YGDFTFDWDAGKFPN-PKSMIDELHDNGVKLVL 84 (265)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCC---CccEEEECcccccC----CceeeeecChhhCCC-HHHHHHHHHHCCCEEEE
Confidence 55555567899999999999988554 47999999999973 3455 999999999 99999999999999999
Q ss_pred EecCCccccCCCCcccccHHhHHHH-HHhcCCcEEEeecCCCCCCCc----------------cchhH-----HHHHHHH
Q 012852 175 YSDAGVFTCQVRPGSLFHEKDDAPL-FASWGVDYLKYDNCFNLGIEP----------------KKRYP-----PMRDALN 232 (455)
Q Consensus 175 w~~pg~~~c~~~Pg~~~~~~~~~~~-~~~wGidylK~D~~~~~~~~~----------------~~~y~-----~m~~AL~ 232 (455)
|+.|.. .++....++. +.+.|||++|.|++....... ...|. .+.++++
T Consensus 85 ~~~P~v---------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~ 155 (265)
T cd06589 85 WIDPYI---------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALR 155 (265)
T ss_pred EeChhH---------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHH
Confidence 999975 5666555554 489999999999986542110 11222 3345554
Q ss_pred hc---CCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHHHh
Q 012852 233 ET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADI 280 (455)
Q Consensus 233 ~~---G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~~~ 280 (455)
+. .|+++++-+.+... ..++-.| ++|+..+|+.+...+..
T Consensus 156 ~~~~~~r~~~~sRs~~~Gs------qry~~~W--~GD~~stW~~l~~~i~~ 198 (265)
T cd06589 156 KNSKNKRPFILSRSGYAGS------QRYAGMW--SGDNTSTWGYLRSQIPA 198 (265)
T ss_pred HhcCCCCeEEEEcCCcccc------cCcCcee--CCcccCCHHHHHHHHHH
Confidence 33 36777765544221 2555666 78999999987666543
No 18
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=99.24 E-value=4.4e-11 Score=117.98 Aligned_cols=214 Identities=16% Similarity=0.185 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcc-cCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccc
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-PDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~-~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~ 182 (455)
.+|.+..++.+|++ +++|++|+.||+||.....+...+.. +.+. .-|+.|++|.++||.++-||..-....
T Consensus 28 g~~t~~~k~yIDfA-----a~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~Ya~~KgVgi~lw~~~~~~~ 99 (273)
T PF10566_consen 28 GATTETQKRYIDFA-----AEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVDYAKEKGVGIWLWYHSETGG 99 (273)
T ss_dssp SSSHHHHHHHHHHH-----HHTT-SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHHHHHHTT-EEEEEEECCHTT
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEeccccccccccccccccccCCc---cCHHHHHHHHHHcCCCEEEEEeCCcch
Confidence 68999999999999 67999999999999853333333322 2211 249999999999999999999764310
Q ss_pred cCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEeeCCCCCCChhhhhhhccCeee
Q 012852 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSWR 262 (455)
Q Consensus 183 c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~c~~g~~~p~~w~~~~~~~~R 262 (455)
- .......++..++++++|||..||+||...++......|..+.+. ++.+.+++.++. ...|..+.+.|-|.+-
T Consensus 100 ~--~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~--AA~~~LmvnfHg--~~kPtG~~RTyPN~mT 173 (273)
T PF10566_consen 100 N--VANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILED--AAEYKLMVNFHG--ATKPTGLRRTYPNLMT 173 (273)
T ss_dssp B--HHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHH--HHHTT-EEEETT--S---TTHHHCSTTEEE
T ss_pred h--hHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHH--HHHcCcEEEecC--CcCCCcccccCccHHH
Confidence 0 000123357789999999999999999988655445555544443 567889999874 4457777666666651
Q ss_pred ecCCCC----CChh---HHH-HHHHhhcccccccCCCCcCCCCcccc------CCCCCCHHHHHHHHHHHHHHhCceeec
Q 012852 263 TTGDIN----DTWA---SMT-SIADINDKWASYAGPGGWNDPDMLEV------GNGGMSYQEYRAHFSIWALMKAPLLIG 328 (455)
Q Consensus 263 is~Di~----~~W~---~~~-~~~~~~~~~~~~~g~g~~nDpDmL~v------g~~~lT~~E~rt~~slwa~~gsPL~is 328 (455)
--. +. ..|. ... .+-...-..+.++||..|.-.=|-.. ..........-.++++..++-|||..-
T Consensus 174 ~Eg-VrG~E~~~~~~~~~~~p~h~~~lPFTR~l~GpmDyTPg~f~~~~~~~~~~~~~~~~tT~ahQLAl~Vv~~Splq~~ 252 (273)
T PF10566_consen 174 REG-VRGQEYNKWSGDGGNPPEHNTTLPFTRMLAGPMDYTPGAFSNRTPFDPNYPNPRVQTTRAHQLALYVVFESPLQML 252 (273)
T ss_dssp E---S--GGGGGTT-TTS-HCCHHCTCCCTCCCCS-B------SSEEGCGT-TTSS-BECS-HHHHHHHHHHS--SEEEE
T ss_pred HHH-hhhhhhcccccCCCCCCcceeeccchhcCcCCcccCChhcccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 110 11 1122 000 00001122344566654432222110 011111223667899999999999988
Q ss_pred CCCC
Q 012852 329 CDVR 332 (455)
Q Consensus 329 ~Dl~ 332 (455)
+|.+
T Consensus 253 aD~P 256 (273)
T PF10566_consen 253 ADSP 256 (273)
T ss_dssp -S-H
T ss_pred hcCH
Confidence 7764
No 19
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.21 E-value=4e-10 Score=114.22 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=117.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccc-
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT- 182 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~- 182 (455)
+.++++|++.|+.+.+.++ -++.|.||++|+.......+++..|+++||+ .+.|++.||++|+|+-+|+.|....
T Consensus 25 ~~~q~~v~~~~~~~r~~~i---P~d~i~ld~~~~~~~~~~~~~f~~d~~~FPd-p~~mi~~L~~~g~k~~~~i~P~i~~~ 100 (317)
T cd06599 25 PDAQEALLEFIDKCREHDI---PCDSFHLSSGYTSIEGGKRYVFNWNKDRFPD-PAAFVAKFHERGIRLAPNIKPGLLQD 100 (317)
T ss_pred ccHHHHHHHHHHHHHHcCC---CeeEEEEeccccccCCCceeeeecCcccCCC-HHHHHHHHHHCCCEEEEEeCCcccCC
Confidence 4569999999999988554 4799999999987322233568889999998 9999999999999999999985310
Q ss_pred --------------------------c---------CCCCcccccHHhHH-HHHHhcCCcEEEeecCCCCCC--------
Q 012852 183 --------------------------C---------QVRPGSLFHEKDDA-PLFASWGVDYLKYDNCFNLGI-------- 218 (455)
Q Consensus 183 --------------------------c---------~~~Pg~~~~~~~~~-~~~~~wGidylK~D~~~~~~~-------- 218 (455)
+ .++|++.++....+ +.+.+.|||++|.|++.....
T Consensus 101 ~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~ 180 (317)
T cd06599 101 HPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIWDDDAVCDG 180 (317)
T ss_pred CHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccCCCcceecC
Confidence 0 35788888887666 778899999999999964210
Q ss_pred C--c------cchhH-----HHHHHHHhc---CCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHHHh
Q 012852 219 E--P------KKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADI 280 (455)
Q Consensus 219 ~--~------~~~y~-----~m~~AL~~~---G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~~~ 280 (455)
. + ...|. ...+++++. .|+++++=+.+.. ...|+-.| ++|+..+|+.+...+..
T Consensus 181 ~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G------~qry~~~W--sGD~~s~W~~L~~~i~~ 250 (317)
T cd06599 181 FGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAG------IQRYAQTW--SGDNRTSWKTLRYNIAM 250 (317)
T ss_pred CCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCccc------ccCCcCee--CCCcccCHHHHHHHHHH
Confidence 0 0 11221 334455443 3567765443321 12456677 88999999987666543
No 20
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.13 E-value=1.9e-09 Score=109.40 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCC--CCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCcc
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLR--DLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVF 181 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~r--d~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~ 181 (455)
.-+++.+++.++.+.+.++ .++.|+||.+|+.... ...|++..|+++||+ .+.+++++|++|+|+-+|+.|...
T Consensus 20 y~~~~~v~~~~~~~~~~~i---P~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDF---PLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPD-PAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CCCHHHHHHHHHHHHHhCC---CceEEEEechhhcCcccCCceeeeEeccccCCC-HHHHHHHHHHcCCcEEEEEcCccc
Confidence 3589999999999988554 4799999999987332 245789999999998 999999999999999999998531
Q ss_pred c------------------------------------cCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCC-------
Q 012852 182 T------------------------------------CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI------- 218 (455)
Q Consensus 182 ~------------------------------------c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~------- 218 (455)
. ..++|++++++.+..+.+.+.|||++|.|+|.....
T Consensus 96 ~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~ 175 (317)
T cd06598 96 KNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEVHPPDMCHH 175 (317)
T ss_pred CCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCccccCCccccC
Confidence 0 135788889888888888999999999999964211
Q ss_pred --C---ccchhH-----HHHHHHHhc---CCCeeEeeCCCCCCChhhhhhhccC-eeeecCCCCCChhHHHHHHHh
Q 012852 219 --E---PKKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGN-SWRTTGDINDTWASMTSIADI 280 (455)
Q Consensus 219 --~---~~~~y~-----~m~~AL~~~---G~~i~~~~c~~g~~~p~~w~~~~~~-~~Ris~Di~~~W~~~~~~~~~ 280 (455)
. ....|. ...+++++. .|+++++=+.+.. ...|+. .| ++|+..+|+.+...+..
T Consensus 176 ~g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~G------sqry~~~~W--sGD~~s~W~~L~~~i~~ 243 (317)
T cd06598 176 KGKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAG------SQRYGVIPW--SGDVGRTWDGLKSQPNA 243 (317)
T ss_pred CCcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCc------cccCcCCcc--CCCCcCCHHHHHHHHHH
Confidence 0 011232 234455432 4667665443211 124543 46 78999999988766643
No 21
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=99.12 E-value=1.4e-09 Score=111.35 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccc-
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT- 182 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~- 182 (455)
.-+++.|++.++.+.+.++ -++.|.||.+|+. ..+++..|+++||+ .+.+++.+|++|+|+-+|+.|....
T Consensus 20 y~~~~~v~~~~~~~~~~~i---P~d~i~lD~~~~~----~~~~f~~d~~~fPd-p~~m~~~l~~~g~~~~~~~~P~v~~~ 91 (339)
T cd06604 20 YYPEEEVREIADEFRERDI---PCDAIYLDIDYMD----GYRVFTWDKERFPD-PKELIKELHEQGFKVVTIIDPGVKVD 91 (339)
T ss_pred CCCHHHHHHHHHHHHHhCC---CcceEEECchhhC----CCCceeeccccCCC-HHHHHHHHHHCCCEEEEEEeCceeCC
Confidence 3589999999999988554 4799999999986 35678999999998 9999999999999999999874210
Q ss_pred ---------------------------c---------CCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCC--------
Q 012852 183 ---------------------------C---------QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI-------- 218 (455)
Q Consensus 183 ---------------------------c---------~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~-------- 218 (455)
| .++|.+.++..+..+.+.+.|||++|.|++.....
T Consensus 92 ~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~ 171 (339)
T cd06604 92 PGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEPAVFNTPGKTTM 171 (339)
T ss_pred CCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCccccCCcccccC
Confidence 1 35777888887777888899999999999853210
Q ss_pred -------------Cc---cchhH-----HHHHHHHhc---CCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHH
Q 012852 219 -------------EP---KKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASM 274 (455)
Q Consensus 219 -------------~~---~~~y~-----~m~~AL~~~---G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~ 274 (455)
.. ...|. ...+++++. .|+++++=+.+... ..++-.| ++|...+|+.+
T Consensus 172 p~~~~~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~ssW~~L 243 (339)
T cd06604 172 PRDAVHRLDGGGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAGI------QRYAAVW--TGDNRSSWEHL 243 (339)
T ss_pred CccceeeCCCCCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccccc------ccccccc--CCcccCCHHHH
Confidence 00 11232 234455443 36777754433211 2445566 78999999987
Q ss_pred HHHHH
Q 012852 275 TSIAD 279 (455)
Q Consensus 275 ~~~~~ 279 (455)
...+.
T Consensus 244 ~~~i~ 248 (339)
T cd06604 244 RLSIP 248 (339)
T ss_pred HHHHH
Confidence 66554
No 22
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.07 E-value=4.1e-09 Score=116.35 Aligned_cols=165 Identities=21% Similarity=0.301 Sum_probs=120.1
Q ss_pred hCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCc
Q 012852 101 FACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (455)
Q Consensus 101 ~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~ 180 (455)
++.+.+|+.+++.|+.+.+.++ .++.|+||++|... . ..++++.|+++||+ .+.|++++|++|+|+.+|+.|..
T Consensus 276 ~~~~~~e~~v~~~~~~~r~~~i---P~d~i~lD~~w~~~-~-~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~i~P~i 349 (665)
T PRK10658 276 FTTNYDEATVNSFIDGMAERDL---PLHVFHFDCFWMKE-F-QWCDFEWDPRTFPD-PEGMLKRLKAKGLKICVWINPYI 349 (665)
T ss_pred cccCCCHHHHHHHHHHHHHcCC---CceEEEEchhhhcC-C-ceeeeEEChhhCCC-HHHHHHHHHHCCCEEEEeccCCc
Confidence 3345689999999999988554 47899999999863 1 23688999999998 99999999999999999999953
Q ss_pred cc-------------------------------c----CCCCcccccHHhHHHHHHhcCCcEEEeecCCCC--------C
Q 012852 181 FT-------------------------------C----QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNL--------G 217 (455)
Q Consensus 181 ~~-------------------------------c----~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~--------~ 217 (455)
.. | .++|++.+++....+.|.+.|||.+|.|++... +
T Consensus 350 ~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G 429 (665)
T PRK10658 350 AQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDG 429 (665)
T ss_pred CCCchHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCC
Confidence 10 1 468889999988888889999999999987432 1
Q ss_pred CCc---cchhH-----HHHHHHHh-c--CCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHHH
Q 012852 218 IEP---KKRYP-----PMRDALNE-T--GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (455)
Q Consensus 218 ~~~---~~~y~-----~m~~AL~~-~--G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~~ 279 (455)
.++ ...|. +..+++++ . .|+++++=|.+... ..|+-.| ++|+..+|+.+...+.
T Consensus 430 ~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~i~tRs~~aGs------Qry~~~W--sGD~~stw~~l~~si~ 494 (665)
T PRK10658 430 SDPQKMHNYYTYLYNKTVFDVLKETRGEGEAVLFARSATVGG------QQFPVHW--GGDCYSNYESMAESLR 494 (665)
T ss_pred CcHHHhcchhHHHHHHHHHHHHHHhcCCCceEEEEecccCCC------CCCCCEE--CCCCCCCHHHHHHHHH
Confidence 111 11222 34455654 3 36777765543221 2455567 7899999998876554
No 23
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=99.07 E-value=5.4e-09 Score=106.59 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=117.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccc--
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT-- 182 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~-- 182 (455)
-|+++|++.++.+.+.+ .-++.|+||..|+. ..++++.|+++||+ .+.+++.||++|+|..+|+.|....
T Consensus 21 ~~~~ev~~v~~~~r~~~---IP~D~i~lDidy~~----~~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~~i~P~i~~g~ 92 (332)
T cd06601 21 SNRSDLEEVVEGYRDNN---IPLDGLHVDVDFQD----NYRTFTTNGGGFPN-PKEMFDNLHNKGLKCSTNITPVISYGG 92 (332)
T ss_pred CCHHHHHHHHHHHHHcC---CCCceEEEcCchhc----CCCceeecCCCCCC-HHHHHHHHHHCCCeEEEEecCceecCc
Confidence 58999999999998854 44799999999986 35789999999999 9999999999999999999996421
Q ss_pred ---------cCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCC---------C--------c-------------cch
Q 012852 183 ---------CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI---------E--------P-------------KKR 223 (455)
Q Consensus 183 ---------c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~---------~--------~-------------~~~ 223 (455)
-.++|.+.++.....+.|.+.|||+++.|++..... . . ...
T Consensus 93 ~~~~~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~ 172 (332)
T cd06601 93 GLGSPGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTDDSYENNVKRKPAIELWNL 172 (332)
T ss_pred cCCCCceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCCCCcccccCCCccCCCCCcccccCCccccccCCchHHHHhhh
Confidence 146788889888778888899999999999753200 0 0 011
Q ss_pred h-----HHHHHHHHhc-----CCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHHH
Q 012852 224 Y-----PPMRDALNET-----GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (455)
Q Consensus 224 y-----~~m~~AL~~~-----G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~~ 279 (455)
| ++..+++++. .|+++++=+.+... ..|+..| ++|+..+|+.+...+.
T Consensus 173 Y~~~~~~a~~e~~~~~~~~~~~RpfiltRS~~aGs------qrY~~~W--sGDn~stW~~L~~si~ 230 (332)
T cd06601 173 YSYNLHKATWHGLNNLNARKNKRNFIIGRGSYAGM------QRFAGLW--TGDNSSSWDFLQINIA 230 (332)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcCcc------CCcCcee--CCCcccCHHHHHHHHH
Confidence 2 1233444332 47777765543221 2566678 8899999998765543
No 24
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.06 E-value=3.5e-09 Score=106.15 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCC-----CCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecC
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPL-----RDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDA 178 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~-----rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~p 178 (455)
..++++|++.|+.+.+.++ .++.|+||.+|+... .+..++++.|+++||+ .+.|+++||++|+|+-+|+.|
T Consensus 21 y~s~~ev~~v~~~~r~~~i---P~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 21 PYSDEEYLALMDRFKKHNI---PLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CCCHHHHHHHHHHHHHhCC---CccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEeCC
Confidence 3589999999999988554 479999999998632 2345789999999998 999999999999999999999
Q ss_pred Cccc---------------c-----------CCCCcccccH-HhHHHHHHhcCCcEEEeecCCCCCC-----CccchhHH
Q 012852 179 GVFT---------------C-----------QVRPGSLFHE-KDDAPLFASWGVDYLKYDNCFNLGI-----EPKKRYPP 226 (455)
Q Consensus 179 g~~~---------------c-----------~~~Pg~~~~~-~~~~~~~~~wGidylK~D~~~~~~~-----~~~~~y~~ 226 (455)
.... + .++|++.++. +...+.+.+.|||.++.|++..... .+..-...
T Consensus 97 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~ 176 (292)
T cd06595 97 ADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNH 176 (292)
T ss_pred CcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccccCCcchHHHHHH
Confidence 6310 0 3567776644 5666778899999999999754321 11100000
Q ss_pred -HHHHHH-hcCCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHH
Q 012852 227 -MRDALN-ETGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIA 278 (455)
Q Consensus 227 -m~~AL~-~~G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~ 278 (455)
..+... ..+|+++++=+.+.. ...|+-.| ++|+..+|+.+...+
T Consensus 177 ~~y~~~~~~~~r~f~lsRs~~~G------~qry~~~W--sGD~~s~W~~l~~~i 222 (292)
T cd06595 177 VHYLDSARNGRRPLIFSRWAGLG------SHRYPIGF--SGDTIISWASLAFQP 222 (292)
T ss_pred HHHHHhhccCCCcEEEEeecccC------CCcCCCcc--CCCcccCHHHHHHHH
Confidence 011111 246788876443321 12566678 899999999876443
No 25
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=99.06 E-value=8.4e-09 Score=104.72 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=113.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccc-
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT- 182 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~- 182 (455)
.-+++.+++.++.+.+.+ ..++.|+||.+|+...+ .|++..|+++||+ ++.+++++|++|+|+-+|+.|....
T Consensus 20 y~~~~ev~~~~~~~~~~~---iP~d~i~lD~~~~~~~~--~~~f~~d~~~FPd-p~~mi~~L~~~G~kv~~~i~P~v~~~ 93 (319)
T cd06591 20 YKTQEELLDVAKEYRKRG---IPLDVIVQDWFYWPKQG--WGEWKFDPERFPD-PKAMVRELHEMNAELMISIWPTFGPE 93 (319)
T ss_pred CCCHHHHHHHHHHHHHhC---CCccEEEEechhhcCCC--ceeEEEChhhCCC-HHHHHHHHHHCCCEEEEEecCCcCCC
Confidence 359999999999998854 45799999988876311 2589999999998 9999999999999999999885310
Q ss_pred -----------------------------c----CCCCcccccHH-hHHHHHHhcCCcEEEeecCCCCCCC---------
Q 012852 183 -----------------------------C----QVRPGSLFHEK-DDAPLFASWGVDYLKYDNCFNLGIE--------- 219 (455)
Q Consensus 183 -----------------------------c----~~~Pg~~~~~~-~~~~~~~~wGidylK~D~~~~~~~~--------- 219 (455)
+ .++|.+.+++. ...+.+.+.|||++|.|++......
T Consensus 94 ~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~ 173 (319)
T cd06591 94 TENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYDFGLDNYR 173 (319)
T ss_pred ChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCcccccCcc
Confidence 0 35777777764 4445678999999999999642110
Q ss_pred --------ccchhH-----HHHHHHHhc---CCCeeEeeCCCCCCChhhhhhhccC-eeeecCCCCCChhHHHHHHH
Q 012852 220 --------PKKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGN-SWRTTGDINDTWASMTSIAD 279 (455)
Q Consensus 220 --------~~~~y~-----~m~~AL~~~---G~~i~~~~c~~g~~~p~~w~~~~~~-~~Ris~Di~~~W~~~~~~~~ 279 (455)
....|. ...+++++. .|+++++=+.+.. ...|+. .| ++|...+|+.+...+.
T Consensus 174 ~~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~G------sqry~~~~W--~GD~~s~w~~L~~~i~ 242 (319)
T cd06591 174 YHLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAG------SQRYGALVW--SGDIDSSWETLRRQIA 242 (319)
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEeccccc------cccccCcee--CCCccccHHHHHHHHH
Confidence 011222 233455544 3677775433211 124553 56 6899999998766554
No 26
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=99.03 E-value=1e-08 Score=103.95 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccc-
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT- 182 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~- 182 (455)
.-|++++++.++.+.+.+ .-++.|+||.+|+. ..+++..|+++||+ .+.+++.+|++|+|+-+|+.|....
T Consensus 20 y~~~~~v~~~~~~~~~~~---iP~d~i~lD~~~~~----~~~~f~~d~~~FPd-p~~~i~~l~~~g~k~~~~~~P~i~~~ 91 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEG---FPYDVVFLDIHYMD----SYRLFTWDPYRFPE-PKKLIDELHKRNVKLVTIVDPGIRVD 91 (317)
T ss_pred CCCHHHHHHHHHHHHHcC---CCcceEEEChhhhC----CCCceeechhcCCC-HHHHHHHHHHCCCEEEEEeeccccCC
Confidence 358999999999998854 44799999999986 35678899999998 9999999999999999999885310
Q ss_pred ------------------------------------cCCCCcccccHHhHHHHHH-hcCCcEEEeecCCCCCC-Cccchh
Q 012852 183 ------------------------------------CQVRPGSLFHEKDDAPLFA-SWGVDYLKYDNCFNLGI-EPKKRY 224 (455)
Q Consensus 183 ------------------------------------c~~~Pg~~~~~~~~~~~~~-~wGidylK~D~~~~~~~-~~~~~y 224 (455)
..++|++.++....++.+. +.|||++|.|++..... +....|
T Consensus 92 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~~~~hn~y 171 (317)
T cd06600 92 QNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDFEKVHNLY 171 (317)
T ss_pred CCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccHHHhcchh
Confidence 0357777888866666654 99999999999875422 112233
Q ss_pred H-----HHHHHHHh---cCCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHHH
Q 012852 225 P-----PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (455)
Q Consensus 225 ~-----~m~~AL~~---~G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~~ 279 (455)
. ...+++++ ..|+++++=+.+... ..++-.| ++|+..+|+.+...+.
T Consensus 172 ~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~~L~~~i~ 226 (317)
T cd06600 172 GLYEAMATAEGFRTSHPRNRIFILTRSGFAGS------QKYAAIW--TGDNTASWDDLKLSIP 226 (317)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEecccccc------CCccceE--CCcccccHHHHHHHHH
Confidence 2 23344443 347787875554321 2455556 7899999998765554
No 27
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=99.02 E-value=3.1e-08 Score=101.42 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCH--HHHHHHHHhcCCeEEEEecCCccc
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGI--KALADYVHGKGLKLGIYSDAGVFT 182 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl--~~l~~~v~~~G~k~Glw~~pg~~~ 182 (455)
-+++.|++.++.+.+.++ -++.|.||.+|+.. .+++..|+++||+ . +.+++.+|++|+|+-+|+.|....
T Consensus 21 ~~~~~v~~~~~~~r~~~i---P~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~v~~ 92 (339)
T cd06602 21 KNVDEVKEVVENMRAAGI---PLDVQWNDIDYMDR----RRDFTLDPVRFPG-LKMPEFVDELHANGQHYVPILDPAISA 92 (339)
T ss_pred CCHHHHHHHHHHHHHhCC---CcceEEECcccccC----ccceecccccCCC-ccHHHHHHHHHHCCCEEEEEEeCcccc
Confidence 589999999999988554 47899999999863 5789999999998 7 999999999999999999885310
Q ss_pred -------------------------------c---------CCCCcccccHHhHHHH-HHhcCCcEEEeecCCCCCC-Cc
Q 012852 183 -------------------------------C---------QVRPGSLFHEKDDAPL-FASWGVDYLKYDNCFNLGI-EP 220 (455)
Q Consensus 183 -------------------------------c---------~~~Pg~~~~~~~~~~~-~~~wGidylK~D~~~~~~~-~~ 220 (455)
| .++|++.++.....+. +.+.|||++|.|++..... ..
T Consensus 93 ~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~ 172 (339)
T cd06602 93 NEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNFYDV 172 (339)
T ss_pred CcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchHhhh
Confidence 0 2466677777666665 5679999999999864321 11
Q ss_pred cchhH-----HHHHHHHh-cC-CCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHHH
Q 012852 221 KKRYP-----PMRDALNE-TG-CSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (455)
Q Consensus 221 ~~~y~-----~m~~AL~~-~G-~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~~ 279 (455)
...|. ...+++++ .+ |+++++=+.+... ..++-.| ++|+..+|+.+...+.
T Consensus 173 hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~w--~GD~~s~W~~L~~~i~ 230 (339)
T cd06602 173 HNLYGLSEAIATYKALQSIPGKRPFVISRSTFPGS------GRYAGHW--LGDNASTWEDLRYSII 230 (339)
T ss_pred cchhhHHHHHHHHHHHHhcCCCCCEEEEecCcccc------cccceeE--CCCccCCHHHHHHHHH
Confidence 12232 23345543 33 5666654433221 2455566 8899999998765553
No 28
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=98.99 E-value=2.8e-09 Score=112.57 Aligned_cols=160 Identities=23% Similarity=0.311 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCcccc-
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC- 183 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c- 183 (455)
-|++.+++.++.+.+.+ ..++.++||++|+. ..+++..|+++||+ ++.+++.+|++|+++++|+.|....+
T Consensus 40 ~~~~~v~~~i~~~~~~~---iP~d~~~iD~~~~~----~~~~f~~d~~~FPd-~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNG---IPLDVIWIDDDYQD----GYGDFTWDPERFPD-PKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp TSHHHHHHHHHHHHHTT-----EEEEEE-GGGSB----TTBTT-B-TTTTTT-HHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CCHHHHHHHHHHHHHcC---CCccceeccccccc----cccccccccccccc-hHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 56999999999998844 45899999999987 35689999999997 99999999999999999998842100
Q ss_pred -------------------------------------CCCCcccccHHhHHHHHHhc-CCcEEEeecCCCCC--------
Q 012852 184 -------------------------------------QVRPGSLFHEKDDAPLFASW-GVDYLKYDNCFNLG-------- 217 (455)
Q Consensus 184 -------------------------------------~~~Pg~~~~~~~~~~~~~~w-GidylK~D~~~~~~-------- 217 (455)
.++|.+.+++....+.+.+. |||++|.|++....
T Consensus 112 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~ 191 (441)
T PF01055_consen 112 PDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLP 191 (441)
T ss_dssp TB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBC
T ss_pred CcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCc
Confidence 35667778886666666655 99999999975542
Q ss_pred C-----C------ccchhH-----HHHHHHHh---cCCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHH
Q 012852 218 I-----E------PKKRYP-----PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIA 278 (455)
Q Consensus 218 ~-----~------~~~~y~-----~m~~AL~~---~G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~ 278 (455)
. . ....|. ...+++++ ..|+++++-+.|.. ...++..| ++|+..+|+.+...+
T Consensus 192 ~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G------~qr~~~~w--~GD~~s~w~~L~~~i 263 (441)
T PF01055_consen 192 EDAVHHDGYSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSRSGWAG------SQRYGGHW--SGDNSSSWDGLRSSI 263 (441)
T ss_dssp TTEECTTECEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEETT------GGGTCEEE--ECSSBSSHHHHHHHH
T ss_pred ccceecCCCCchheeccccccchhhhhhhhhhccCCCCcceeecccCCC------CCccceee--cccccccHHHHHHHH
Confidence 0 0 022332 34455554 34677776443321 12455566 789999999887665
Q ss_pred Hh
Q 012852 279 DI 280 (455)
Q Consensus 279 ~~ 280 (455)
..
T Consensus 264 ~~ 265 (441)
T PF01055_consen 264 PA 265 (441)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 29
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.96 E-value=3.3e-08 Score=101.28 Aligned_cols=170 Identities=18% Similarity=0.204 Sum_probs=111.3
Q ss_pred chhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCC------------CC-----CCCcccC-CCCCCCCH
Q 012852 97 SWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLR------------DL-----KGQLVPD-TITFPSGI 158 (455)
Q Consensus 97 SW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~r------------d~-----~G~~~~d-~~~FP~Gl 158 (455)
-|..-+...++++|++.|+.+.+.++ -++.|+||+ |+...- |. .++...+ .++||+ .
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~i---P~d~i~lD~-W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPd-p 87 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGI---PVTVVVIEQ-WSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPN-P 87 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCC---CeeEEEEec-ccCcceeeeeccchhcccccCCcceecccccCccccCCC-H
Confidence 34444456899999999999988554 379999995 886211 11 1333444 368998 9
Q ss_pred HHHHHHHHhcCCeEEEEecCCccc---------------------------------------c----CCCCcccccHHh
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFT---------------------------------------C----QVRPGSLFHEKD 195 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~---------------------------------------c----~~~Pg~~~~~~~ 195 (455)
+.|+++||++|+|+-+|+.|.... | .++|++.++...
T Consensus 88 ~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~ 167 (340)
T cd06597 88 KGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWME 167 (340)
T ss_pred HHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHH
Confidence 999999999999999999884210 1 245667777766
Q ss_pred HHHHHH-hcCCcEEEeecCCCCC---------CCc---cchh-----HHHHHHHHhcC-CCeeEeeCCCCCCChhhhhhh
Q 012852 196 DAPLFA-SWGVDYLKYDNCFNLG---------IEP---KKRY-----PPMRDALNETG-CSIFYSLCEWGVDDPALWAGK 256 (455)
Q Consensus 196 ~~~~~~-~wGidylK~D~~~~~~---------~~~---~~~y-----~~m~~AL~~~G-~~i~~~~c~~g~~~p~~w~~~ 256 (455)
..+.+- +.|||.+|.|++...- ... ...| +.+.+++++.+ |+++++=+.+... ..
T Consensus 168 ~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~~~r~filtRs~~~Gs------qr 241 (340)
T cd06597 168 KRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRAKKDGVTFSRAGYTGA------QA 241 (340)
T ss_pred HHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHhccCCcEEEEecccCcc------CC
Confidence 666554 7999999999885320 000 1122 23444555555 6676664443211 24
Q ss_pred ccCeeeecCCCCCChhHHHHHHH
Q 012852 257 VGNSWRTTGDINDTWASMTSIAD 279 (455)
Q Consensus 257 ~~~~~Ris~Di~~~W~~~~~~~~ 279 (455)
++-.| ++|+..+|+.+...+.
T Consensus 242 y~~~W--sGD~~s~W~~L~~~i~ 262 (340)
T cd06597 242 HGIFW--AGDENSTFGAFRWSVF 262 (340)
T ss_pred Cccee--cCCCCCCHHHHHHHHH
Confidence 55456 7899999998765554
No 30
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=98.94 E-value=1e-07 Score=96.80 Aligned_cols=160 Identities=18% Similarity=0.304 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCC-----CcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCc
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG-----QLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G-----~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~ 180 (455)
++++|++.++.+.+.++ -++.|.|| .|+...-+..| ++..|+++||+ .+.|++++|++|+|+-+|+.|..
T Consensus 21 s~~~v~~~~~~~~~~~i---P~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i~P~v 95 (317)
T cd06594 21 GTDKVLEALEKARAAGV---KVAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYINPYL 95 (317)
T ss_pred CHHHHHHHHHHHHHcCC---CeeEEEEc-cccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEecCce
Confidence 99999999999988554 37999999 58642112223 47899999998 99999999999999999999963
Q ss_pred cc--------------------------------c----CCCCcccccHHhHHHH-HHhcCCcEEEeecCCCCCC-----
Q 012852 181 FT--------------------------------C----QVRPGSLFHEKDDAPL-FASWGVDYLKYDNCFNLGI----- 218 (455)
Q Consensus 181 ~~--------------------------------c----~~~Pg~~~~~~~~~~~-~~~wGidylK~D~~~~~~~----- 218 (455)
.. | .++|++.++....++. +.+.|||.+|.|++.....
T Consensus 96 ~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~ 175 (317)
T cd06594 96 ADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYLPFDAVLH 175 (317)
T ss_pred ecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCCCCcceec
Confidence 10 0 3567888888655554 4899999999999864211
Q ss_pred Cc------cchhH-----HHHHHHHhc---CCCeeEeeCCCCCCChhhhhhhccC-eeeecCCCCCChh---HHHHHH
Q 012852 219 EP------KKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGN-SWRTTGDINDTWA---SMTSIA 278 (455)
Q Consensus 219 ~~------~~~y~-----~m~~AL~~~---G~~i~~~~c~~g~~~p~~w~~~~~~-~~Ris~Di~~~W~---~~~~~~ 278 (455)
.+ ...|. ...+++++. +|+++++=+.+.. ...|+. .| ++|+..+|+ .+...+
T Consensus 176 ~g~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~G------sqry~~~~W--sGD~~s~W~~~~~L~~~i 245 (317)
T cd06594 176 SGEDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFTG------SQKYSTLFW--AGDQMVSWDAHDGLKSVV 245 (317)
T ss_pred CCCCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEcccccc------ccccccccc--CCCCCCCCcCcccHHHHH
Confidence 11 12232 123344443 4667776443321 125554 46 789999997 355444
No 31
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=98.92 E-value=7.7e-08 Score=98.50 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=114.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccc
Q 012852 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~ 182 (455)
..-|++++++.|+.+.+.++ .++.|.||..|.. ..+++..|+++||+ .+.+++.+|++|+|+-+|+.|....
T Consensus 19 ~y~~~~ev~~~~~~~~~~~i---P~d~i~lD~~~~~----~~~~f~~d~~~FPd-p~~mi~~L~~~G~k~~~~~~P~v~~ 90 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDI---PYDVIWLDIEHTD----GKRYFTWDKKKFPD-PEKMQEKLASKGRKLVTIVDPHIKR 90 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCC---CceEEEEChHHhC----CCCceEeCcccCCC-HHHHHHHHHHCCCEEEEEecCceec
Confidence 34689999999999988554 4799999999976 35678999999998 9999999999999999999885210
Q ss_pred ---------------------------------c----CCCCcccccHHhHHHHHH---hcCCcEEEeecCCCCCC----
Q 012852 183 ---------------------------------C----QVRPGSLFHEKDDAPLFA---SWGVDYLKYDNCFNLGI---- 218 (455)
Q Consensus 183 ---------------------------------c----~~~Pg~~~~~~~~~~~~~---~wGidylK~D~~~~~~~---- 218 (455)
| .++|++.+++...++.+. +.|+++++.|++.....
T Consensus 91 ~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~~~~ 170 (339)
T cd06603 91 DDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFNGPE 170 (339)
T ss_pred CCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccCCCC
Confidence 1 357888888876666554 47999999999853210
Q ss_pred -------------Cc---cchhH-----HHHHHHHhc----CCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhH
Q 012852 219 -------------EP---KKRYP-----PMRDALNET----GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWAS 273 (455)
Q Consensus 219 -------------~~---~~~y~-----~m~~AL~~~----G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~ 273 (455)
.. ...|. ...+++++. .|+++++-+.+... ..++-.| ++|+..+|+.
T Consensus 171 ~~~p~d~~~~~~~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~~ 242 (339)
T cd06603 171 LTMPKDAIHYGGIEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAGS------QRYAAIW--TGDNTATWEH 242 (339)
T ss_pred CcCCCcceecCCCcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccccc------cceeeee--CCCccCCHHH
Confidence 00 11232 233455432 46776765443221 2455566 7899999998
Q ss_pred HHHHHH
Q 012852 274 MTSIAD 279 (455)
Q Consensus 274 ~~~~~~ 279 (455)
+...+.
T Consensus 243 L~~~i~ 248 (339)
T cd06603 243 LKISIP 248 (339)
T ss_pred HHHHHH
Confidence 776554
No 32
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.92 E-value=1.7e-08 Score=112.82 Aligned_cols=170 Identities=20% Similarity=0.252 Sum_probs=126.1
Q ss_pred eEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCC-cCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCe
Q 012852 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDC-WSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLK 171 (455)
Q Consensus 93 ~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDG-W~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k 171 (455)
+| +.|-..+..-+|+.+.+.++.+.+ .+.-++.|+||.. |.. ..+.++.|+.+||+ .+.|++++|++|+|
T Consensus 266 ~G-~~~~~~~~~~~e~~v~~~i~~~~~---~~IP~d~~~lD~~~~~~----~~~~F~wd~~~FP~-pk~mi~~l~~~Gik 336 (772)
T COG1501 266 LG-WLWTSRYTYYDEDEVLEFIDEMRE---RDIPLDVFVLDIDFWMD----NWGDFTWDPDRFPD-PKQMIAELHEKGIK 336 (772)
T ss_pred cC-CCceeccccccHHHHHHHHhhccc---ccCcceEEEEeehhhhc----cccceEECcccCCC-HHHHHHHHHhcCce
Confidence 45 244444456789999999999976 5566899999986 754 45789999999999 99999999999999
Q ss_pred EEEEecCCcc--------------------------cc---------CCCCcccccHH-hHHHHHHhcCCcEEEeecCCC
Q 012852 172 LGIYSDAGVF--------------------------TC---------QVRPGSLFHEK-DDAPLFASWGVDYLKYDNCFN 215 (455)
Q Consensus 172 ~Glw~~pg~~--------------------------~c---------~~~Pg~~~~~~-~~~~~~~~wGidylK~D~~~~ 215 (455)
+-+|+.|... .| .++|+++++.. ...+.+.+.|||.++.|+|-.
T Consensus 337 l~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp 416 (772)
T COG1501 337 LIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEP 416 (772)
T ss_pred EEEEeccccccCCchHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCC
Confidence 9999999531 01 46889999998 556779999999999999865
Q ss_pred CCCC------c------cchh-----HHHHHHHHhc---CCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHH
Q 012852 216 LGIE------P------KKRY-----PPMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMT 275 (455)
Q Consensus 216 ~~~~------~------~~~y-----~~m~~AL~~~---G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~ 275 (455)
.-.+ + ...| +...+++++. .|+++|+=|.+... ..++-.| ++|+...|+++.
T Consensus 417 ~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~aG~------Q~~~~~W--sGD~~s~wd~l~ 488 (772)
T COG1501 417 EPFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGYAGS------QRYAAHW--SGDNRSSWDSLR 488 (772)
T ss_pred ccccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEecccccc------eecccee--CCccccchHHHH
Confidence 4211 1 1222 2455667665 47888876654321 1557788 899999999987
Q ss_pred HHHH
Q 012852 276 SIAD 279 (455)
Q Consensus 276 ~~~~ 279 (455)
..+.
T Consensus 489 ~si~ 492 (772)
T COG1501 489 ESIP 492 (772)
T ss_pred hhHH
Confidence 6654
No 33
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=98.70 E-value=7e-07 Score=101.37 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=114.2
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccc--
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT-- 182 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~-- 182 (455)
-+++.+++.|+.+.+.+ .-++.|.||..|... .+.++.|+++||+ .+.|++.+|++|+|.-.+++|+...
T Consensus 198 ~sq~eV~eva~~fre~~---IP~DvIwlDidYm~g----~~~FTwD~~rFPd-P~~mv~~Lh~~G~kvv~iidPgI~~d~ 269 (978)
T PLN02763 198 ESAKRVAEIARTFREKK---IPCDVVWMDIDYMDG----FRCFTFDKERFPD-PKGLADDLHSIGFKAIWMLDPGIKAEE 269 (978)
T ss_pred CCHHHHHHHHHHHHHcC---CCceEEEEehhhhcC----CCceeECcccCCC-HHHHHHHHHHCCCEEEEEEcCCCccCC
Confidence 58999999999998854 447999999999763 4468999999998 9999999999999997777885310
Q ss_pred -------------------------------c----CCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCC---------
Q 012852 183 -------------------------------C----QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI--------- 218 (455)
Q Consensus 183 -------------------------------c----~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~--------- 218 (455)
| .++|.+++|.....+.|.+.|||.++.|+|.....
T Consensus 270 gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~ 349 (978)
T PLN02763 270 GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPE 349 (978)
T ss_pred CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCc
Confidence 1 24677888888888888899999999999854210
Q ss_pred ------C-------c----cchhH-----HHHHHHHh---cCCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhH
Q 012852 219 ------E-------P----KKRYP-----PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWAS 273 (455)
Q Consensus 219 ------~-------~----~~~y~-----~m~~AL~~---~G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~ 273 (455)
+ . ...|. +..+++++ ..|+++++=+.+... ..|+-.| ++|...+|+.
T Consensus 350 ~~~h~g~~~~gG~~~h~~~HNlYgll~akatyEgl~~~~~~kRPFilTRSgfaGs------QRYaa~W--tGDn~SsWe~ 421 (978)
T PLN02763 350 TNIHRGDEELGGVQNHSHYHNVYGMLMARSTYEGMLLANKNKRPFVLTRAGFIGS------QRYAATW--TGDNLSNWEH 421 (978)
T ss_pred cccccCCcccCCccCHHHHhhhhHHHHHHHHHHHHHHhCCCCCcEEEEccccCcC------CCCceEE--CCCccCCHHH
Confidence 0 0 11121 22334433 247888865543221 2566677 8899999998
Q ss_pred HHHHHH
Q 012852 274 MTSIAD 279 (455)
Q Consensus 274 ~~~~~~ 279 (455)
+...+.
T Consensus 422 L~~sI~ 427 (978)
T PLN02763 422 LHMSIP 427 (978)
T ss_pred HHHHHH
Confidence 765543
No 34
>PRK10426 alpha-glucosidase; Provisional
Probab=98.61 E-value=1.1e-06 Score=96.91 Aligned_cols=154 Identities=18% Similarity=0.258 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCC-----CCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCc
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK-----GQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~-----G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~ 180 (455)
+++++++.++.+.+.++ -++.|.||| |+..+.... ++|+.|+++||+ .+.+++++|++|+|+-+|+.|..
T Consensus 219 ~~~~v~~v~~~~r~~~I---P~d~i~ldd-w~~~~~~~~g~~~~~~~~~d~~~FPd-p~~mi~~L~~~G~k~v~~i~P~v 293 (635)
T PRK10426 219 GTEVVQKKLDTMRNAGV---KVNGIWAQD-WSGIRMTSFGKRLMWNWKWDSERYPQ-LDSRIKQLNEEGIQFLGYINPYL 293 (635)
T ss_pred CHHHHHHHHHHHHHcCC---CeeEEEEec-ccccccccccccccccceEChhhCCC-HHHHHHHHHHCCCEEEEEEcCcc
Confidence 57889999999987544 378899984 986322222 467889999998 99999999999999999999952
Q ss_pred c-------------------------------cc----CCCCcccccHHhHH-HHHHhcCCcEEEeecCCCCC-------
Q 012852 181 F-------------------------------TC----QVRPGSLFHEKDDA-PLFASWGVDYLKYDNCFNLG------- 217 (455)
Q Consensus 181 ~-------------------------------~c----~~~Pg~~~~~~~~~-~~~~~wGidylK~D~~~~~~------- 217 (455)
. .| .++|++.+++...+ +.+.+.|||.+|.|++....
T Consensus 294 ~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~ 373 (635)
T PRK10426 294 ASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHN 373 (635)
T ss_pred CCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeC
Confidence 1 01 46788888886655 56889999999999976321
Q ss_pred -CCc---cchhH-----HHHHHHHhc---CCCeeEeeCCCCCCChhhhhhhccC-eeeecCCCCCChh
Q 012852 218 -IEP---KKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGN-SWRTTGDINDTWA 272 (455)
Q Consensus 218 -~~~---~~~y~-----~m~~AL~~~---G~~i~~~~c~~g~~~p~~w~~~~~~-~~Ris~Di~~~W~ 272 (455)
.+. ...|. ...+++++. +|+++++=+.+.. ...|+. .| ++|...+|+
T Consensus 374 g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~aG------sQry~~~~W--sGD~~ssW~ 433 (635)
T PRK10426 374 GVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGYTG------SQKYSTLFW--AGDQNVDWS 433 (635)
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEccccCC------cCCcccccc--CCCCCCcCc
Confidence 111 12332 234555544 4677775443211 125554 57 789999995
No 35
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=97.84 E-value=6.4e-05 Score=83.21 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=91.7
Q ss_pred EEechhhhC--cCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCe
Q 012852 94 GWNSWNFFA--CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLK 171 (455)
Q Consensus 94 gwnSW~~~~--~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k 171 (455)
-|+-|..+. ...+.+.+++.++.+.+ +..+++.+++|+-|+. .++|.++|+.+||. |+.+++.||+.|||
T Consensus 295 YWslGf~~~RwgY~nls~~~dvv~~~~~---agiPld~~~~DiDyMd----~ykDFTvd~~~fp~-~~~fv~~Lh~~G~k 366 (805)
T KOG1065|consen 295 YWSLGFQLCRWGYKNLSVVRDVVENYRA---AGIPLDVIVIDIDYMD----GYKDFTVDKVWFPD-LKDFVDDLHARGFK 366 (805)
T ss_pred hhhccceecccccccHHHHHHHHHHHHH---cCCCcceeeeehhhhh----cccceeeccccCcc-hHHHHHHHHhCCCe
Confidence 388887665 57899999999999976 4456789999999986 46789999999998 99999999999999
Q ss_pred EEEEecCCccc------------c--------------------------CCCCcccccHHhHHHHHH-hcCCcEEEeec
Q 012852 172 LGIYSDAGVFT------------C--------------------------QVRPGSLFHEKDDAPLFA-SWGVDYLKYDN 212 (455)
Q Consensus 172 ~Glw~~pg~~~------------c--------------------------~~~Pg~~~~~~~~~~~~~-~wGidylK~D~ 212 (455)
.=++++|+..+ | -++|.+..+....++.|. +.+||.+++|+
T Consensus 367 yvliidP~is~~~~y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 367 YVLIIDPFISTNSSYGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDM 446 (805)
T ss_pred EEEEeCCccccCccchhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEEC
Confidence 99999996421 0 134555666666666775 88999999999
Q ss_pred CCC
Q 012852 213 CFN 215 (455)
Q Consensus 213 ~~~ 215 (455)
+..
T Consensus 447 nE~ 449 (805)
T KOG1065|consen 447 NEP 449 (805)
T ss_pred CCc
Confidence 754
No 36
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=97.24 E-value=0.3 Score=53.35 Aligned_cols=69 Identities=6% Similarity=0.091 Sum_probs=48.6
Q ss_pred eeEEEEEcCCCcEEEEEEecCCCceeEEEEceecCCCCCCceEEEEccCCccccccccceEEEEEcCCCEEEEEE
Q 012852 371 LQVWVGPLSGHRLVVALWNRCPKAETITAQWDALGLESSTKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMYIF 445 (455)
Q Consensus 371 ~~vw~~~l~dg~~avalfN~~~~~~~iti~l~~LGL~~~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll~l 445 (455)
.-++.+... ++.+++++|.+++++++++++... .+ -...|+.+++.......+.++++|+|+++.+|+|
T Consensus 470 v~~f~R~~~-~~~vlVv~N~s~~~~~v~l~~~~~--~~---~~~~dl~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 470 VLAFLREYE-GERVLCVFNFSRNPQAVELDLSEF--AG---RVPVELIGGAPFPPVGGDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred EEEEEEEcC-CcEEEEEEeCCCCCEEeecccccc--cc---CcceecccCCccccccCCcceEEECCceEEEEEe
Confidence 455566654 467899999999998888876543 12 1258888887541122234889999999999985
No 37
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.03 E-value=0.011 Score=58.26 Aligned_cols=177 Identities=19% Similarity=0.297 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccC
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~ 184 (455)
-.+..+++.||..++.. +...+|+-+||+... . +.|+.++++++++|++.|||++-+
T Consensus 42 ~~~~~a~~~~~~y~~~~---~plgw~lpndgyg~~------y---------~~l~~~~~~~~~~g~~~glwt~~~----- 98 (261)
T cd06596 42 STTDDARKVADKYKEND---MPLGWMLPNDGYGCG------Y---------ENLKEVVDYLHANGVETGLWTQSG----- 98 (261)
T ss_pred cchhhHHHHHHHHHhcC---CCceeeccCCCCcch------H---------HHHHHHHHHHHHcCCccccccccc-----
Confidence 34566788888887744 345677778777542 1 239999999999999999997643
Q ss_pred CCCcccccHHhHHHHHHhcCCcEEEeecCCCCCC-C-ccchhHHHHHHHHh--cCCCeeEeeCCCCCCChhhhhhhccCe
Q 012852 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI-E-PKKRYPPMRDALNE--TGCSIFYSLCEWGVDDPALWAGKVGNS 260 (455)
Q Consensus 185 ~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~-~-~~~~y~~m~~AL~~--~G~~i~~~~c~~g~~~p~~w~~~~~~~ 260 (455)
+++..+.....|+.++|+|--..+.- . +...-+...+++++ ..|+++++-|.|... ..++-.
T Consensus 99 --------l~~~~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aGs------QRy~~~ 164 (261)
T cd06596 99 --------LRDIAKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESNSNARPFIVTVDGWAGT------QRYAGI 164 (261)
T ss_pred --------hhhhhhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhCCCCCCEEEEecCcccc------CCCCCc
Confidence 24455667788999999998754321 1 11111223334433 348899987766432 245556
Q ss_pred eeecCCCCCChhHHHHHHHhhcccccccCCCCc-CCCCccccCCCCCCHHHHHHHHHHHHHHhCceee
Q 012852 261 WRTTGDINDTWASMTSIADINDKWASYAGPGGW-NDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLI 327 (455)
Q Consensus 261 ~Ris~Di~~~W~~~~~~~~~~~~~~~~~g~g~~-nDpDmL~vg~~~lT~~E~rt~~slwa~~gsPL~i 327 (455)
| ++|+..+|+.+...+...... .++|-..| .|.+=+. | + + .|--++-.-|+++ .|++.
T Consensus 165 W--sGD~~stWe~Lr~sI~~~L~~-gLsG~p~~G~DIGGF~-g--~-~-~EL~vRW~Q~gaF-~P~~R 223 (261)
T cd06596 165 W--TGDQSGSWEYIRFHIPTYIGS-GLSGQPNTTSDVDGIF-G--G-S-PETYTRDLQWKAF-TPVLM 223 (261)
T ss_pred c--CCCCcCcHHHHHHHHHHHHHH-HhcCCCcCccccCcCC-C--C-C-HHHHHHHHHHHHh-hhhhh
Confidence 7 889999999876555432221 23443333 4443321 2 2 3 4555554555555 57664
No 38
>PRK10785 maltodextrin glucosidase; Provisional
Probab=96.55 E-value=0.92 Score=50.27 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=83.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCc-----ccCCCCCCC--CHHHHHHHHHhcCCeEEEE
Q 012852 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL-----VPDTITFPS--GIKALADYVHGKGLKLGIY 175 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~-----~~d~~~FP~--Gl~~l~~~v~~~G~k~Glw 175 (455)
+.=|-+.|.+..+.+ +++|++.|-|=-=.... ...|.+ .+|| .|.. .|+.|++.+|++|||+=|=
T Consensus 174 ~GGDl~GI~~kLdYL-----~~LGv~~I~L~Pif~s~--s~hgYd~~Dy~~iDp-~~Gt~~df~~Lv~~aH~rGikVilD 245 (598)
T PRK10785 174 YGGDLDGISEKLPYL-----KKLGVTALYLNPIFTAP--SVHKYDTEDYRHVDP-QLGGDAALLRLRHATQQRGMRLVLD 245 (598)
T ss_pred cCcCHHHHHHHHHHH-----HHcCCCEEEeCCcccCC--CCCCcCcccccccCc-ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 345789999999999 77999988876544331 112332 3554 4432 5999999999999996542
Q ss_pred ecC-------------------------------------Ccccc-----------CCCCcccccHHh----HHHHHH-h
Q 012852 176 SDA-------------------------------------GVFTC-----------QVRPGSLFHEKD----DAPLFA-S 202 (455)
Q Consensus 176 ~~p-------------------------------------g~~~c-----------~~~Pg~~~~~~~----~~~~~~-~ 202 (455)
+-+ +...| ..+|.+++|+.. .++.+- +
T Consensus 246 ~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~ 325 (598)
T PRK10785 246 GVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKA 325 (598)
T ss_pred ECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcC
Confidence 211 00001 135666777643 455443 3
Q ss_pred -cCCcEEEeecCCCCCC-----CccchhHHHHHHHHhcCCCeeEeeCCCC
Q 012852 203 -WGVDYLKYDNCFNLGI-----EPKKRYPPMRDALNETGCSIFYSLCEWG 246 (455)
Q Consensus 203 -wGidylK~D~~~~~~~-----~~~~~y~~m~~AL~~~G~~i~~~~c~~g 246 (455)
.|||.+.+|....-.. ...+..+.+++++++..++.++..-.|.
T Consensus 326 ~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~ 375 (598)
T PRK10785 326 PYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFG 375 (598)
T ss_pred CCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccC
Confidence 6999999998643211 1224456788888888877665433343
No 39
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.23 E-value=0.86 Score=50.86 Aligned_cols=114 Identities=20% Similarity=0.327 Sum_probs=67.7
Q ss_pred cccCceEEEec--------CCcCCCCCCCCCCcccCCCCC--CCCHHHHHHHHHhcCCeEEEEecCC-------------
Q 012852 123 AELGYDHVNID--------DCWSSPLRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSDAG------------- 179 (455)
Q Consensus 123 ~~~G~~~~~iD--------DGW~~~~rd~~G~~~~d~~~F--P~Gl~~l~~~v~~~G~k~Glw~~pg------------- 179 (455)
+++||+.|.|= ..|- .+..+...++ .+| |+.|+.||+.+|++||++=|=+-+.
T Consensus 178 k~lG~t~velmPv~e~~~~~~wG---Y~~~~~~~~~-~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~d 253 (639)
T PRK14706 178 TYMGYTHVELLGVMEHPFDGSWG---YQVTGYYAPT-SRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFD 253 (639)
T ss_pred HHcCCCEEEccchhcCCCCCCCC---cCcccccccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccC
Confidence 78898887652 2231 1112233444 344 3579999999999999976432220
Q ss_pred -------------cc----cc---CCCCcccccHHhHHHHH-HhcCCcEEEeecCCCC----------------C---CC
Q 012852 180 -------------VF----TC---QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNCFNL----------------G---IE 219 (455)
Q Consensus 180 -------------~~----~c---~~~Pg~~~~~~~~~~~~-~~wGidylK~D~~~~~----------------~---~~ 219 (455)
.. ++ .++|+++.|+-..+..+ .+.+||.+.+|....- + .+
T Consensus 254 g~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~ 333 (639)
T PRK14706 254 GGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLE 333 (639)
T ss_pred CCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHH
Confidence 00 00 23677788877666665 6899999999974321 0 01
Q ss_pred ccchhHHHHHHHHhcCCCeeE
Q 012852 220 PKKRYPPMRDALNETGCSIFY 240 (455)
Q Consensus 220 ~~~~y~~m~~AL~~~G~~i~~ 240 (455)
.....+.+.+++++..+++++
T Consensus 334 a~~fl~~ln~~v~~~~p~~~~ 354 (639)
T PRK14706 334 AIAFLKRLNEVTHHMAPGCMM 354 (639)
T ss_pred HHHHHHHHHHHHHHhCCCeEE
Confidence 223345667777776666543
No 40
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=95.95 E-value=2.3 Score=45.72 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=33.5
Q ss_pred CCcccccHHhHHHHHHh-cCCcEEEeecCCCCCCCccchhHHHHHHHHhcC-CCeeE
Q 012852 186 RPGSLFHEKDDAPLFAS-WGVDYLKYDNCFNLGIEPKKRYPPMRDALNETG-CSIFY 240 (455)
Q Consensus 186 ~Pg~~~~~~~~~~~~~~-wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G-~~i~~ 240 (455)
+|.+++++...++.+.+ .|||.+.+|....-. ......+.+++++.. .++++
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~---~~f~~~~~~~~~~~~~~~~~~ 260 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAVKHID---AWFIKEWIEHVREVAGKDLFI 260 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC---HHHHHHHHHHHHHhcCCCeEE
Confidence 35556666666666665 999999999876542 234456777776543 34443
No 41
>PRK12313 glycogen branching enzyme; Provisional
Probab=95.26 E-value=6.4 Score=43.91 Aligned_cols=102 Identities=19% Similarity=0.238 Sum_probs=61.5
Q ss_pred CHHHHHHH-HHHHHHcCCcccCceEEEecCCcCCC-----CCCCCCCcccCCCCCC--CCHHHHHHHHHhcCCeEEEEec
Q 012852 106 SETIIKET-ADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLGIYSD 177 (455)
Q Consensus 106 ~e~~i~~~-ad~~~~~gl~~~G~~~~~iDDGW~~~-----~rd~~G~~~~d~~~FP--~Gl~~l~~~v~~~G~k~Glw~~ 177 (455)
|-..+.+. ++.+ +++|++.|.|=-=+... +.+..+...+++ +|- +.||.||+.+|++||++=|=+-
T Consensus 168 ~~~~~~~~ll~yl-----~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~Gt~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 168 SYRELADELIPYV-----KEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYGTPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44444444 4777 77999888764322211 111122334443 343 4699999999999999755322
Q ss_pred CC--------------c------------c---cc----CCCCcccccHHhHHHHH-HhcCCcEEEeecC
Q 012852 178 AG--------------V------------F---TC----QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNC 213 (455)
Q Consensus 178 pg--------------~------------~---~c----~~~Pg~~~~~~~~~~~~-~~wGidylK~D~~ 213 (455)
+. . . .+ ..+|++++|+...++.+ .++|||.+.+|..
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~ 311 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAV 311 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCh
Confidence 20 0 0 00 23567777877666665 5789999999954
No 42
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=94.42 E-value=0.3 Score=49.67 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCC--CCC--------CCCcccCCCCCCCCHHHHHHHHHhcCCeEEEE
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPL--RDL--------KGQLVPDTITFPSGIKALADYVHGKGLKLGIY 175 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~--rd~--------~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw 175 (455)
+++.+.+.++.+ +++|++.|.++=-+.+.. ..+ .|....+|. | +=|+.+++..|++||++=-|
T Consensus 17 ~~~~~~~~l~~l-----~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg-~-DpL~~~I~eaHkrGlevHAW 89 (311)
T PF02638_consen 17 SKEQIDEMLDDL-----KSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPG-F-DPLEFMIEEAHKRGLEVHAW 89 (311)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCC-c-cHHHHHHHHHHHcCCEEEEE
Confidence 788899999988 556677777764332210 000 011111110 1 12899999999999999999
Q ss_pred ecCCc-----------------------------------cccCCCCcccccHHhHHH-HHHhcCCcEEEeecCCC
Q 012852 176 SDAGV-----------------------------------FTCQVRPGSLFHEKDDAP-LFASWGVDYLKYDNCFN 215 (455)
Q Consensus 176 ~~pg~-----------------------------------~~c~~~Pg~~~~~~~~~~-~~~~wGidylK~D~~~~ 215 (455)
++.++ .-|+++|++++|+...++ .++.+.||.|-+|....
T Consensus 90 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~y 165 (311)
T PF02638_consen 90 FRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFY 165 (311)
T ss_pred EEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEeccccc
Confidence 85321 013678999999977665 45799999999996543
No 43
>PRK12568 glycogen branching enzyme; Provisional
Probab=94.32 E-value=12 Score=42.52 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=56.6
Q ss_pred HHHHHHcCCcccCceEEEecCCcCCC-----CCCCCCCcccCCCCCC--CCHHHHHHHHHhcCCeEEEEecCC-------
Q 012852 114 ADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLGIYSDAG------- 179 (455)
Q Consensus 114 ad~~~~~gl~~~G~~~~~iDDGW~~~-----~rd~~G~~~~d~~~FP--~Gl~~l~~~v~~~G~k~Glw~~pg------- 179 (455)
++.+ +++||+.|.|=--.... +-+..|...+++ +|. +.++.||+.+|++||++=|=+-+.
T Consensus 276 l~yl-----k~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~ 349 (730)
T PRK12568 276 IPYV-----QQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAH 349 (730)
T ss_pred HHHH-----HHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcccc
Confidence 5666 77899888653211110 111223344553 454 369999999999999976533221
Q ss_pred -------c--c--------------cc---CCCCcccccHHhHHHH-HHhcCCcEEEeecC
Q 012852 180 -------V--F--------------TC---QVRPGSLFHEKDDAPL-FASWGVDYLKYDNC 213 (455)
Q Consensus 180 -------~--~--------------~c---~~~Pg~~~~~~~~~~~-~~~wGidylK~D~~ 213 (455)
. + ++ .++|+++.|+-..+.. +.++|||.+.+|..
T Consensus 350 ~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAv 410 (730)
T PRK12568 350 GLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAV 410 (730)
T ss_pred ccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCH
Confidence 0 0 00 2356666777555555 46899999999964
No 44
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=94.03 E-value=0.44 Score=39.13 Aligned_cols=71 Identities=10% Similarity=0.158 Sum_probs=46.1
Q ss_pred eeEEEEEcCCCcEEEEEEecCCCceeEEEEceecCCCCCCceEEEEccCCccc--ccc-----------ccceEEEEEcC
Q 012852 371 LQVWVGPLSGHRLVVALWNRCPKAETITAQWDALGLESSTKVSVRDLWQHKQV--TGD-----------AVSSFGAQVDA 437 (455)
Q Consensus 371 ~~vw~~~l~dg~~avalfN~~~~~~~iti~l~~LGL~~~~~~~vrDlW~g~~~--~g~-----------~~~~l~~~L~p 437 (455)
.=+|.|..+++..+|+++|.+++....++ .+|++.. -+.+++.+..+. .|. ..+.++++|||
T Consensus 11 v~af~R~~~~~~~~lvv~Nf~~~~~~~~~---~~~~p~~--g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g~~~~~lp~ 85 (95)
T PF02806_consen 11 VIAFERKDKGDDRVLVVFNFSPEAVYEDY---RIGVPEA--GRYKEVLNSDDEEYGGSGKGNSGEVTVDSNGRITVTLPP 85 (95)
T ss_dssp EEEEEETTTETTEEEEEEESSSS-EEEEE---EECSSSS--EEEEETTTTTCEEEEESSCSETSEEEEETTSEEEEEEST
T ss_pred EEEEEEcCCCCCEEEEEEECCCcccceeE---EeCCCCc--ceeeEEeCCCccEECCcccccCceEEEeeCCEEEEEECC
Confidence 45566654333378999999997444443 4566632 355777776332 111 25678999999
Q ss_pred CCEEEEEEE
Q 012852 438 HDCQMYIFT 446 (455)
Q Consensus 438 H~~~ll~lt 446 (455)
.++.+|++.
T Consensus 86 ~s~~vl~~~ 94 (95)
T PF02806_consen 86 YSALVLKLK 94 (95)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEc
Confidence 999999985
No 45
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=93.65 E-value=0.71 Score=51.26 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=80.5
Q ss_pred CCHHHHHHHH-HHHHHcCCcccCceEEEec--------CCcCCCCCCCCCCcccCCCCCC--CCHHHHHHHHHhcCCeEE
Q 012852 105 ISETIIKETA-DALVSTGLAELGYDHVNID--------DCWSSPLRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLG 173 (455)
Q Consensus 105 i~e~~i~~~a-d~~~~~gl~~~G~~~~~iD--------DGW~~~~rd~~G~~~~d~~~FP--~Gl~~l~~~v~~~G~k~G 173 (455)
-|...|.+.. +.+ +++|++.|.|= ..|- -+..+...+++ +|. +.||.||+.+|++||++=
T Consensus 153 g~~~~i~~~l~dyl-----~~LGvt~i~L~Pi~e~~~~~~wG---Y~~~~y~~~~~-~~Gt~~dlk~lV~~~H~~Gi~Vi 223 (613)
T TIGR01515 153 LSYRELADQLIPYV-----KELGFTHIELLPVAEHPFDGSWG---YQVTGYYAPTS-RFGTPDDFMYFVDACHQAGIGVI 223 (613)
T ss_pred CCHHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCC---CCcccCccccc-ccCCHHHHHHHHHHHHHCCCEEE
Confidence 4566666654 777 78999999882 2231 12223445553 554 359999999999999998
Q ss_pred EEecCCc----------------c--cc---------------CCCCcccccHHhHHHHH-HhcCCcEEEeecCCCC---
Q 012852 174 IYSDAGV----------------F--TC---------------QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNCFNL--- 216 (455)
Q Consensus 174 lw~~pg~----------------~--~c---------------~~~Pg~~~~~~~~~~~~-~~wGidylK~D~~~~~--- 216 (455)
|-+-+.- + .+ ..+|++++|+...++.+ .++|||.+.+|....-
T Consensus 224 lD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~ 303 (613)
T TIGR01515 224 LDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYL 303 (613)
T ss_pred EEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhh
Confidence 8765410 0 00 13567777877666665 5899999999974210
Q ss_pred ------------------CCCccchhHHHHHHHHhcCCCeeEe
Q 012852 217 ------------------GIEPKKRYPPMRDALNETGCSIFYS 241 (455)
Q Consensus 217 ------------------~~~~~~~y~~m~~AL~~~G~~i~~~ 241 (455)
..++.+-.+.+++.+++..+++++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~li 346 (613)
T TIGR01515 304 DYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTI 346 (613)
T ss_pred ccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 0012334467777777777765543
No 46
>PRK14705 glycogen branching enzyme; Provisional
Probab=93.34 E-value=17 Score=43.68 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=56.4
Q ss_pred HHHHHHHcCCcccCceEEEe--------cCCcCCCCCCCCCCcccCCCCC--CCCHHHHHHHHHhcCCeEEEEecCCc--
Q 012852 113 TADALVSTGLAELGYDHVNI--------DDCWSSPLRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSDAGV-- 180 (455)
Q Consensus 113 ~ad~~~~~gl~~~G~~~~~i--------DDGW~~~~rd~~G~~~~d~~~F--P~Gl~~l~~~v~~~G~k~Glw~~pg~-- 180 (455)
.++.+ +++||+.|.| |..|- .+..+...|+ .+| |+.||.||+.+|++||++=|=+-|.-
T Consensus 771 lldYl-----k~LGvt~IeLmPv~e~p~~~swG---Y~~~~y~ap~-~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 771 LVDYV-----KWLGFTHVEFMPVAEHPFGGSWG---YQVTSYFAPT-SRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred HHHHH-----HHhCCCEEEECccccCCCCCCCC---CCccccCCcC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 35777 7789988864 22231 1122333344 234 35799999999999999765433310
Q ss_pred ----------c-------cc--------------CCCCcccccHHhHHHH-HHhcCCcEEEeecC
Q 012852 181 ----------F-------TC--------------QVRPGSLFHEKDDAPL-FASWGVDYLKYDNC 213 (455)
Q Consensus 181 ----------~-------~c--------------~~~Pg~~~~~~~~~~~-~~~wGidylK~D~~ 213 (455)
. .+ .++|+++.|+-..+.. +.+++||.+.+|..
T Consensus 842 ~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav 906 (1224)
T PRK14705 842 KDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAV 906 (1224)
T ss_pred cchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeeh
Confidence 0 00 1345566666555554 46899999999985
No 47
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=92.69 E-value=0.61 Score=47.54 Aligned_cols=101 Identities=18% Similarity=0.117 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccC-----------CCCCCCCHHHHHHHHHhcCCeEEE
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPD-----------TITFPSGIKALADYVHGKGLKLGI 174 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d-----------~~~FP~Gl~~l~~~v~~~G~k~Gl 174 (455)
+++.+.+.++.+ ++-|++.+||| -.|++|.+..+ ...+...++.|++.+|++|+-+=-
T Consensus 11 ~~~~~~~~~~~i-----~~t~lNavVID------vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IA 79 (316)
T PF13200_consen 11 SPERLDKLLDLI-----KRTELNAVVID------VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIA 79 (316)
T ss_pred CHHHHHHHHHHH-----HhcCCceEEEE------EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEE
Confidence 457788888888 45667889987 23444544321 122223599999999999988766
Q ss_pred EecCCc----------------------------cccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCC
Q 012852 175 YSDAGV----------------------------FTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLG 217 (455)
Q Consensus 175 w~~pg~----------------------------~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~ 217 (455)
++..+. ..|+..+++.+|.-..++..++.|||-|-+|+...+.
T Consensus 80 RIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP~ 150 (316)
T PF13200_consen 80 RIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRFPD 150 (316)
T ss_pred EEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeeecCC
Confidence 664221 2346677888999899999999999999999987764
No 48
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=92.65 E-value=0.15 Score=38.50 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=29.0
Q ss_pred eEEEEEcCCCcEEEEEEecCCCceeEEEEceecCCCCCCceEEEEccCCccccccccceEEEEEcCCCEEEEE
Q 012852 372 QVWVGPLSGHRLVVALWNRCPKAETITAQWDALGLESSTKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMYI 444 (455)
Q Consensus 372 ~vw~~~l~dg~~avalfN~~~~~~~iti~l~~LGL~~~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll~ 444 (455)
+|=.+. .++..++-++|.++++++++++- ..+|+.+++.. .+. ++|+|+++++++
T Consensus 3 ev~~R~-~~~~~y~F~~N~s~~~~~v~l~~-----------~~~dll~g~~~----~~~--~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 3 EVTVRE-NDGGRYLFLLNFSDEPQTVTLPE-----------SYTDLLTGETV----SGG--LTLPPYGVRVLK 57 (58)
T ss_dssp EEEE-----ETTEEEEEE-SSS-EE----T-----------T-EEEES-------------SEE-TTEEEEEE
T ss_pred EEEEEE-cCCCEEEEEEECCCCCEEEEcCC-----------CceecccCcce----eeE--EEECCCEEEEEE
Confidence 343442 34456899999999999887621 34899999865 222 889999999986
No 49
>PRK05402 glycogen branching enzyme; Provisional
Probab=91.17 E-value=32 Score=39.18 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=59.6
Q ss_pred HHHHHHH-HHHHHHcCCcccCceEEEecCCcCCC-----CCCCCCCcccCCCCCC--CCHHHHHHHHHhcCCeEEEEecC
Q 012852 107 ETIIKET-ADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLGIYSDA 178 (455)
Q Consensus 107 e~~i~~~-ad~~~~~gl~~~G~~~~~iDDGW~~~-----~rd~~G~~~~d~~~FP--~Gl~~l~~~v~~~G~k~Glw~~p 178 (455)
-+.+.+. ++.+ +++||+.|.|=-=.+.. +-+..+...+++ +|- +.|+.||+.+|++||++=|=+-+
T Consensus 264 ~~~i~~~l~~yl-----k~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~Gt~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 264 YRELADQLIPYV-----KEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFGTPDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 3444444 4666 78999888764322211 111112233443 332 36999999999999997653322
Q ss_pred C--------------c----------------ccc---CCCCcccccHHhHHHHH-HhcCCcEEEeecC
Q 012852 179 G--------------V----------------FTC---QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNC 213 (455)
Q Consensus 179 g--------------~----------------~~c---~~~Pg~~~~~~~~~~~~-~~wGidylK~D~~ 213 (455)
. . .+| ..+|.+++|+...+..+ .++|||.+.+|..
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v 406 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAV 406 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCH
Confidence 1 0 000 23566777776666665 5799999999963
No 50
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=90.75 E-value=2.6 Score=43.37 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCeEEEEecCCccccCCCC--------c-------ccccH-----HhHHHHHHhcCCcEEEeecCCCCC
Q 012852 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRP--------G-------SLFHE-----KDDAPLFASWGVDYLKYDNCFNLG 217 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~~~c~~~P--------g-------~~~~~-----~~~~~~~~~wGidylK~D~~~~~~ 217 (455)
+++|++.+++.|||||+|+.+.....+..+ + ...|+ .+.-+++..+.+|.|=+|......
T Consensus 140 v~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~ 219 (346)
T PF01120_consen 140 VGELADACRKYGLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDP 219 (346)
T ss_dssp HHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCC
T ss_pred HHHHHHHHHHcCCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCcc
Confidence 799999999999999999998632111110 0 11122 344566778899999999876542
Q ss_pred CCccchhHHHHHHHHhcCCCeeEee
Q 012852 218 IEPKKRYPPMRDALNETGCSIFYSL 242 (455)
Q Consensus 218 ~~~~~~y~~m~~AL~~~G~~i~~~~ 242 (455)
.+ ...+..+.+.+++..+.+++..
T Consensus 220 ~~-~~~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 220 DE-DWDSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp CT-HHHHHHHHHHHHHHSTTSEEEC
T ss_pred cc-ccCHHHHHHHHHHhCCeEEEec
Confidence 21 2233556666667777777764
No 51
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=90.47 E-value=3.4 Score=43.32 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=67.7
Q ss_pred cccCceEEEec----CCcCCCCCCCCCCcccCCCCCC-CCHHHHHHHHHhcCCeEEEEecCCcc-------------ccC
Q 012852 123 AELGYDHVNID----DCWSSPLRDLKGQLVPDTITFP-SGIKALADYVHGKGLKLGIYSDAGVF-------------TCQ 184 (455)
Q Consensus 123 ~~~G~~~~~iD----DGW~~~~rd~~G~~~~d~~~FP-~Gl~~l~~~v~~~G~k~Glw~~pg~~-------------~c~ 184 (455)
+++|.+|+||= ||+.-- .....+|.+-..-+- +=+++|++.+|+.|||||+|+.+-.. .+.
T Consensus 91 k~AGakY~vlTaKHHDGF~lw-~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~ 169 (384)
T smart00812 91 KKAGAKYVVLTAKHHDGFCLW-DSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSLFDWFNPLYAGPTSSDEDPD 169 (384)
T ss_pred HHcCCCeEEeeeeecCCcccc-CCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCCccccccccccccc
Confidence 45788999983 343211 001123322111000 22899999999999999999986211 112
Q ss_pred CCCcccccH----HhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCe---eEeeCCCC
Q 012852 185 VRPGSLFHE----KDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSI---FYSLCEWG 246 (455)
Q Consensus 185 ~~Pg~~~~~----~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i---~~~~c~~g 246 (455)
..|...+|+ .+.-+++..+|-|.|=.|........ ......+.+-+....+.+ +++ ..|+
T Consensus 170 ~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~~~-~~~~~~l~~~~~~~qP~~~~vvvn-~R~~ 236 (384)
T smart00812 170 NWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAPDD-YWRSKEFLAWLYNLSPVKDTVVVN-DRWG 236 (384)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCccc-hhcHHHHHHHHHHhCCCCceEEEE-cccc
Confidence 233344555 45667778899999999986432111 112344555555555554 665 3443
No 52
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=87.80 E-value=7.3 Score=33.13 Aligned_cols=74 Identities=15% Similarity=-0.003 Sum_probs=43.9
Q ss_pred eeEEEEEcC-CCcEEEEEEecCCCceeEEEEceecCCCCCCceEEEEccCCc--------cc-----cccccceEEEEEc
Q 012852 371 LQVWVGPLS-GHRLVVALWNRCPKAETITAQWDALGLESSTKVSVRDLWQHK--------QV-----TGDAVSSFGAQVD 436 (455)
Q Consensus 371 ~~vw~~~l~-dg~~avalfN~~~~~~~iti~l~~LGL~~~~~~~vrDlW~g~--------~~-----~g~~~~~l~~~L~ 436 (455)
.-|.++... +++++|+-.|-.+. ++++++|+.|+-. ..|.+.=+=.+. .. .-..++.+++.|.
T Consensus 16 yvviARr~~~G~~Wyvg~in~~~~-r~i~l~L~FL~~g--~~y~a~i~~D~~~a~~~~~~~~~~~~~~v~~~~~l~i~l~ 92 (103)
T PF14509_consen 16 YVVIARRKRDGDDWYVGGINGEDA-RTITLPLSFLDKG--KKYTATIYTDGPDADYTNPEAYKIETRKVTSGDKLTITLA 92 (103)
T ss_dssp EEEEEEEETTTTEEEEEEEE-TT--EEEEEEGCCS-TT----EEEEEEEE-TTTCTTCTT-EEEEEEEE-TT-EEEEEE-
T ss_pred EEEEEEEcCCCCCEEEEEeeCCCc-eEEEEECcccCCC--CcEEEEEEEeCCcccccCCcceEEEEEEECCCCEEEEEEe
Confidence 556677764 46899999997654 5599999988632 235543222222 11 0122467999999
Q ss_pred CCCEEEEEEEe
Q 012852 437 AHDCQMYIFTP 447 (455)
Q Consensus 437 pH~~~ll~ltp 447 (455)
|+|-.+++|+|
T Consensus 93 ~~GG~vi~~~p 103 (103)
T PF14509_consen 93 PGGGFVIRITP 103 (103)
T ss_dssp TT-EEEEEEEE
T ss_pred CCCcEEEEEEC
Confidence 99999999987
No 53
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=85.62 E-value=7.8 Score=32.19 Aligned_cols=72 Identities=14% Similarity=0.173 Sum_probs=40.6
Q ss_pred eeEEEEEcCCCcEEEEEEecCC-CceeEEEEceecCCCCCCceEEEEccCCccccccccceEEEEEcCCCEEEEE
Q 012852 371 LQVWVGPLSGHRLVVALWNRCP-KAETITAQWDALGLESSTKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMYI 444 (455)
Q Consensus 371 ~~vw~~~l~dg~~avalfN~~~-~~~~iti~l~~LGL~~~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll~ 444 (455)
.-++.|.-.+++.++++.|.+. ....+++++...|+.++ -.|.|+++.++......+.+++.+..-.-++|.
T Consensus 8 ~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g--~~v~dVlsc~~~tv~~~G~l~v~m~~G~P~Vl~ 80 (91)
T PF09260_consen 8 TIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAG--TEVTDVLSCTSYTVDSNGTLTVPMSNGEPRVLY 80 (91)
T ss_dssp EEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT---EEEETTTTEEEE--TTS-EEEEESTT--EEEE
T ss_pred EEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCC--CEEEEEecCCEEEECCCCEEEEEEcCCceEEEE
Confidence 3455555444556667788887 57788888887777763 588999999887434578899999887777653
No 54
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=84.59 E-value=3.4 Score=33.25 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=32.4
Q ss_pred EEEcCCCcEEEEEEecCCCceeEEEEceecCCCCCCceEEEEccCCccccccccceEEEEEcCCCEEEE
Q 012852 375 VGPLSGHRLVVALWNRCPKAETITAQWDALGLESSTKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMY 443 (455)
Q Consensus 375 ~~~l~dg~~avalfN~~~~~~~iti~l~~LGL~~~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll 443 (455)
.....++...++++|.+++++++. .. ...+-+|+.... ...+ .++|+||+++++
T Consensus 36 ~~r~~~~~~l~v~~Nls~~~~~~~---------~~--~~~~~l~~s~~~--~~~~--~~~L~p~~~~v~ 89 (89)
T PF11941_consen 36 FRRTGGGERLLVAFNLSDEPVTVP---------EG--PWGEVLFSSEPA--RAGG--AGTLPPWSVVVL 89 (89)
T ss_dssp EEEEETTEEEEEEEE-SSS-EEEE---------TS--CCEEEEEECSCS--SE----EEEE-TTEEEEE
T ss_pred EEEEcCCceEEEEEecCCCcEEcc---------CC--CCCeEEEcCCCc--cccc--CceECCCEEEEC
Confidence 344457778999999999887776 11 123455555432 2222 789999999875
No 55
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=84.54 E-value=1.8 Score=34.97 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=41.1
Q ss_pred eeEEEEEcCCCcEEEEEEecCCCceeEEEEceec--CCCCCCceEEEEccCCccccccccceEEEEEcCCCEEEEEE
Q 012852 371 LQVWVGPLSGHRLVVALWNRCPKAETITAQWDAL--GLESSTKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMYIF 445 (455)
Q Consensus 371 ~~vw~~~l~dg~~avalfN~~~~~~~iti~l~~L--GL~~~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll~l 445 (455)
.-|+.|... +..++++.|-+++++++ ++++. -|.. .-+.+|+-+|+.+ ..+. +++|+|.++.++.|
T Consensus 11 vYvYfR~~~-~~tVmVilN~n~~~~~l--dl~ry~E~l~~--~~~~~diltg~~i--~l~~--~l~l~~~~~~ILel 78 (78)
T PF10438_consen 11 VYVYFRYYD-GKTVMVILNKNDKEQTL--DLKRYAEVLGG--FTSAKDILTGKTI--DLSK--NLTLPPKSVLILEL 78 (78)
T ss_dssp EEEEEEEES-SEEEEEEEE-SSS-EEE--EGGGGHHHHTT----EEEETTT--EE--E-SS--EEEE-TTEEEEEEE
T ss_pred EEEEEEEcC-CCEEEEEEcCCCCCeEE--cHHHHHHhhCC--CcceEECCCCCEE--ecCC--cEEECCCceEEEEC
Confidence 567777764 45788999999987555 55433 1221 2378999999976 3333 68999999999875
No 56
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=81.87 E-value=12 Score=41.43 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=57.3
Q ss_pred CHHHHHHHHHhcCCeEEEEecC----------------Cc-------------ccc-----CCCCcccccHHhHHHHH-H
Q 012852 157 GIKALADYVHGKGLKLGIYSDA----------------GV-------------FTC-----QVRPGSLFHEKDDAPLF-A 201 (455)
Q Consensus 157 Gl~~l~~~v~~~G~k~Glw~~p----------------g~-------------~~c-----~~~Pg~~~~~~~~~~~~-~ 201 (455)
.||.||+.+|++||++=|=+-. .. ..| ..+|.+++|+...++.+ .
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~ 309 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVK 309 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHH
Confidence 4999999999999997542211 00 011 13567778887666665 4
Q ss_pred hcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEeeCCCC
Q 012852 202 SWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWG 246 (455)
Q Consensus 202 ~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~c~~g 246 (455)
+.|||.+.+|..... +.+..+.+++++++..+++++-.-.|.
T Consensus 310 e~~iDGfR~D~~~~~---~~~~~~~~~~~~~~~~p~~~ligE~w~ 351 (605)
T TIGR02104 310 EYNIDGFRFDLMGIH---DIETMNEIRKALNKIDPNILLYGEGWD 351 (605)
T ss_pred HcCCCEEEEechhcC---CHHHHHHHHHHHHhhCCCeEEEEccCC
Confidence 799999999976432 234456788888777777665433454
No 57
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=79.97 E-value=20 Score=39.29 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecC--------CcCCCCCCCCCCcccCCCCCC--CCHHHHHHHHHhcCCeEEEE
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDD--------CWSSPLRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLGIY 175 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDD--------GW~~~~rd~~G~~~~d~~~FP--~Gl~~l~~~v~~~G~k~Glw 175 (455)
|-..|.+.++.+ +++|++.|.|=- +|-- |......+++ +|- +.||.||+.+|++||++=|=
T Consensus 109 ~~~gi~~~l~yl-----~~LGv~~i~L~Pi~~~~~~~~~GY---~~~~~~~~~~-~~G~~~e~k~lV~~aH~~Gi~VilD 179 (542)
T TIGR02402 109 TFDAAIEKLPYL-----ADLGITAIELMPVAQFPGTRGWGY---DGVLPYAPHN-AYGGPDDLKALVDAAHGLGLGVILD 179 (542)
T ss_pred CHHHHHHhhHHH-----HHcCCCEEEeCccccCCCCCCCCC---CccCcccccc-ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 556666677777 778988886522 2211 1111223332 332 35999999999999997543
Q ss_pred ecCC-----c---------------ccc-----CCCC---cccccHHhHHHHH-HhcCCcEEEeecCCCCC-CCccchhH
Q 012852 176 SDAG-----V---------------FTC-----QVRP---GSLFHEKDDAPLF-ASWGVDYLKYDNCFNLG-IEPKKRYP 225 (455)
Q Consensus 176 ~~pg-----~---------------~~c-----~~~P---g~~~~~~~~~~~~-~~wGidylK~D~~~~~~-~~~~~~y~ 225 (455)
+-+. . ..| ..+| .+++|+-..+..+ .++|||.+.+|....-. ....+-.+
T Consensus 180 ~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~ 259 (542)
T TIGR02402 180 VVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILE 259 (542)
T ss_pred EccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHH
Confidence 2210 0 011 2356 7777776666554 58999999999753221 12233556
Q ss_pred HHHHHHHhcCCC
Q 012852 226 PMRDALNETGCS 237 (455)
Q Consensus 226 ~m~~AL~~~G~~ 237 (455)
.+++++++..++
T Consensus 260 ~~~~~~~~~~p~ 271 (542)
T TIGR02402 260 ELAREVHELAAE 271 (542)
T ss_pred HHHHHHHHHCCC
Confidence 778888776554
No 58
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=79.48 E-value=6.3 Score=43.82 Aligned_cols=100 Identities=22% Similarity=0.244 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEe--------cCCcCCCCCCCCCCcccCCCCC--CCCHHHHHHHHHhcCCeEEEE
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNI--------DDCWSSPLRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIY 175 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~i--------DDGW~~~~rd~~G~~~~d~~~F--P~Gl~~l~~~v~~~G~k~Glw 175 (455)
+.+...+.++.+ +++||+.|.| |-+|-- +..|..-|. ++| |++||.|||.+|++|+-+=|=
T Consensus 163 ~~e~a~~llpYl-----~elG~T~IELMPv~e~p~~~sWGY---q~~g~yAp~-sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYL-----KELGITHIELMPVAEHPGDRSWGY---QGTGYYAPT-SRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHH-----HHhCCCEEEEcccccCCCCCCCCC---Ccceecccc-ccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 456666677777 7789888775 556632 222333333 456 568999999999999876554
Q ss_pred ecCCc-----ccc----------------------------CCCCcccccHHhHH-HHHHhcCCcEEEeecCC
Q 012852 176 SDAGV-----FTC----------------------------QVRPGSLFHEKDDA-PLFASWGVDYLKYDNCF 214 (455)
Q Consensus 176 ~~pg~-----~~c----------------------------~~~Pg~~~~~~~~~-~~~~~wGidylK~D~~~ 214 (455)
.-|+- ..| .+.++++.|+-..+ --+.++.||.|.+|...
T Consensus 234 ~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~ 306 (628)
T COG0296 234 WVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVA 306 (628)
T ss_pred ecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhh
Confidence 33321 111 12455566654333 33689999999999964
No 59
>PRK06233 hypothetical protein; Provisional
Probab=76.39 E-value=11 Score=39.17 Aligned_cols=107 Identities=15% Similarity=0.011 Sum_probs=61.7
Q ss_pred hhCcCCCHHHHHHHHHHHHH--cCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCC---CHHHHHH----H----HH
Q 012852 100 FFACNISETIIKETADALVS--TGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPS---GIKALAD----Y----VH 166 (455)
Q Consensus 100 ~~~~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~---Gl~~l~~----~----v~ 166 (455)
.+|.+ .++.+.++|+++.+ ..|.++|+++|+|||.-....++.. ..+ ..+|. ....+++ . +.
T Consensus 157 ~~Y~~-~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~N~~~~ 231 (372)
T PRK06233 157 KFYDS-WDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKL---NDT-ENDPKEHQKYVKLAEDAVYVINKALA 231 (372)
T ss_pred ccCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccc---ccc-ccchhhhhhHHHHHHHHHHHHHHHHh
Confidence 35544 36677777776654 2467799999999997543222210 000 01111 1111111 1 23
Q ss_pred hc--CCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 167 GK--GLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 167 ~~--G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
.. +++++++++.|.+. +...+..-++..+..|.+.+||.+=+++-
T Consensus 232 ~~p~d~~i~~H~C~Gn~~--~~~~~~g~y~~i~~~l~~~~vd~~~lE~~ 278 (372)
T PRK06233 232 DLPEDLTVTTHICRGNFK--STYLFSGGYEPVAKYLGQLNYDGFFLEYD 278 (372)
T ss_pred CCCcCCEEEEEeeCCCCC--CcccccCcHHHHHHHHHhCCCCEEEEecC
Confidence 33 77899999988543 22333344556677788899999888884
No 60
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=75.50 E-value=12 Score=41.72 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=55.1
Q ss_pred EEEEEcCC-CcEEEEEEecCCCceeEEEEceecCCCCCCceEEEEccCCcccccc--ccceEEEEEcCCCEEEEEEEeC
Q 012852 373 VWVGPLSG-HRLVVALWNRCPKAETITAQWDALGLESSTKVSVRDLWQHKQVTGD--AVSSFGAQVDAHDCQMYIFTPR 448 (455)
Q Consensus 373 vw~~~l~d-g~~avalfN~~~~~~~iti~l~~LGL~~~~~~~vrDlW~g~~~~g~--~~~~l~~~L~pH~~~ll~ltp~ 448 (455)
+.+..+.+ +...|++.|.+.+++..++++..+ .+ ..++|+..+... +. ..+.+.++|+||+-.-|++.+.
T Consensus 612 a~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~--~~---~~~~dl~~~~~~-~~~~~~~~~~i~L~~y~~~wl~~~~~ 684 (688)
T TIGR02455 612 VMVHELPAGKGIQITALNFGADAIAEEICLPGF--AP---GPVVDIIHESVE-GDLTDDCELMINLDPYEALALRIVNA 684 (688)
T ss_pred EEEEEcCCCCceEEEeeccCCCCeeeEEecccc--CC---CCceeccCCCcc-CCcCCCceeEEEecCcceEEEEeccc
Confidence 45556654 478899999999999999987754 33 278999999876 44 3467999999999999988764
No 61
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=75.07 E-value=9.5 Score=35.17 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=46.7
Q ss_pred CcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCC----CHHHHHHHHHhcCCeE--EEE
Q 012852 102 ACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPS----GIKALADYVHGKGLKL--GIY 175 (455)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~----Gl~~l~~~v~~~G~k~--Glw 175 (455)
..+.+++...+..+.| ++.|+++++|= |....+...+.-...+..|.. =+..+.+...+.|||+ |||
T Consensus 14 ~~~~~~~~W~~~~~~m-----~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAM-----KAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred hcCCCHHHHHHHHHHH-----HHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 4688999999999999 67899888774 544221111110001112222 2677777888999985 999
Q ss_pred ecCCcc
Q 012852 176 SDAGVF 181 (455)
Q Consensus 176 ~~pg~~ 181 (455)
+++...
T Consensus 87 ~~~~~w 92 (166)
T PF14488_consen 87 FDPDYW 92 (166)
T ss_pred CCchhh
Confidence 887543
No 62
>PLN02960 alpha-amylase
Probab=75.06 E-value=24 Score=40.78 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=60.1
Q ss_pred CHHHHH-HHHHHHHHcCCcccCceEEEecCCcCCC-----CCCCCCCcccCCCCC--CCCHHHHHHHHHhcCCeEEEEec
Q 012852 106 SETIIK-ETADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSD 177 (455)
Q Consensus 106 ~e~~i~-~~ad~~~~~gl~~~G~~~~~iDDGW~~~-----~rd~~G~~~~d~~~F--P~Gl~~l~~~v~~~G~k~Glw~~ 177 (455)
|...+. +.++.+ +++||+.|.|=---... +-+..+...+++ +| |+.|+.||+.+|++||++=|=+-
T Consensus 414 tf~~~~e~~LdYL-----k~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~-~yGtp~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHV-----KKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSS-RFGTPDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCCCCcccCCCccc-ccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 445554 346777 77898888763211110 011112223332 22 45799999999999999654332
Q ss_pred CC---------------cc---------------cc----CCCCcccccHHhHHHHH-HhcCCcEEEeecCC
Q 012852 178 AG---------------VF---------------TC----QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNCF 214 (455)
Q Consensus 178 pg---------------~~---------------~c----~~~Pg~~~~~~~~~~~~-~~wGidylK~D~~~ 214 (455)
+. .. .| ..+|.++.|+-..+..+ .+++||.+.+|...
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~ 559 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLG 559 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccc
Confidence 10 00 00 23466677776666554 69999999999753
No 63
>PLN02877 alpha-amylase/limit dextrinase
Probab=71.73 E-value=58 Score=38.27 Aligned_cols=86 Identities=21% Similarity=0.233 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCeEEEEec--------------------CCc------------cccCC-----CCcccccHHhHHHHH
Q 012852 158 IKALADYVHGKGLKLGIYSD--------------------AGV------------FTCQV-----RPGSLFHEKDDAPLF 200 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~--------------------pg~------------~~c~~-----~Pg~~~~~~~~~~~~ 200 (455)
+|.||+.+|+.||++=+=+- |+. .+|.. +|-++.++-..+..+
T Consensus 468 fk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW 547 (970)
T PLN02877 468 FRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNW 547 (970)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999754321 110 12322 233445554555554
Q ss_pred -HhcCCcEEEeecCCCCCCCccchhHHHHHHHHhc--------CCCeeEeeCCCC
Q 012852 201 -ASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNET--------GCSIFYSLCEWG 246 (455)
Q Consensus 201 -~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~--------G~~i~~~~c~~g 246 (455)
.++|||.+.+|-...-.. +....++++|++. |+++++-.-.|.
T Consensus 548 ~~ey~VDGFRFDlmg~i~~---~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 548 AVNYKVDGFRFDLMGHLMK---RTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHHhCCCEEEEEccccccH---HHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 489999999999876533 2334555566543 577877666674
No 64
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.72 E-value=22 Score=37.75 Aligned_cols=108 Identities=12% Similarity=0.038 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEE-EecCCcCCCCCCCCCCcccCCC------CCCCCHHHHHHHHHhcCCeEEEEe
Q 012852 104 NISETIIKETADALVSTGLAELGYDHV-NIDDCWSSPLRDLKGQLVPDTI------TFPSGIKALADYVHGKGLKLGIYS 176 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~-~iDDGW~~~~rd~~G~~~~d~~------~FP~Gl~~l~~~v~~~G~k~Glw~ 176 (455)
-.++.++.+..+.+...|+..+ |+ |.-+|..-. .....-|..+.. ..=|=|+.+++..|++||++==|+
T Consensus 60 ~~~~~el~~~ld~l~~ln~NTv---~~qV~~~G~~ly-pS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf 135 (418)
T COG1649 60 LFQRQELKDILDDLQKLNFNTV---YPQVWNDGDALY-PSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWF 135 (418)
T ss_pred cccHHHHHHHHHHHHHcCCcee---EEEEecCccccc-cccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeech
Confidence 3688999999999965544442 23 333443221 111112222210 011227888889999999999999
Q ss_pred cCCcc---c--------------------------------cCCCCcccccHHhH-HHHHHhcCCcEEEeecCCC
Q 012852 177 DAGVF---T--------------------------------CQVRPGSLFHEKDD-APLFASWGVDYLKYDNCFN 215 (455)
Q Consensus 177 ~pg~~---~--------------------------------c~~~Pg~~~~~~~~-~~~~~~wGidylK~D~~~~ 215 (455)
+++.. + -+.+|++++|+..+ ++..+.|.||.|-+|--..
T Consensus 136 ~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy 210 (418)
T COG1649 136 NPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFY 210 (418)
T ss_pred hhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeec
Confidence 98520 0 14678899999655 5677899999999997543
No 65
>smart00632 Aamy_C Aamy_C domain.
Probab=71.63 E-value=27 Score=27.87 Aligned_cols=54 Identities=20% Similarity=0.035 Sum_probs=34.7
Q ss_pred CcEEEEEEecCCCceeEEEEceecCCCCCCceEEEEccC----Cccccccc-cceEEEEEcCCCEE
Q 012852 381 HRLVVALWNRCPKAETITAQWDALGLESSTKVSVRDLWQ----HKQVTGDA-VSSFGAQVDAHDCQ 441 (455)
Q Consensus 381 g~~avalfN~~~~~~~iti~l~~LGL~~~~~~~vrDlW~----g~~~~g~~-~~~l~~~L~pH~~~ 441 (455)
|+..++.+|.+....++++. -+|+.+ .| .|+-+ ++.. ... .+.++++|||++++
T Consensus 16 g~~g~VaiN~~~~~~~~~~~---t~lp~G-~Y--~d~l~g~~~g~~v-~V~~~G~~~~~l~~~~~v 74 (81)
T smart00632 16 GSKGFVAINRSDSDLTITLQ---TSLPAG-TY--CDVISGLCTGKSV-TVGSNGIATFTLPAGGAV 74 (81)
T ss_pred CCeEEEEEECCCCceEEEEe---ecCCCc-ce--EEEecCcccCCEE-EECCCCEEEEEECCCCeE
Confidence 35677778998876666553 345543 23 56666 4443 233 57889999999953
No 66
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=71.29 E-value=16 Score=36.79 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=60.7
Q ss_pred cccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHh
Q 012852 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS 202 (455)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~ 202 (455)
.+.|.+.|.++|-|..... -+.-....=-.|. ++.+++.+|+.|.+.+++.+-.. ......+.+
T Consensus 178 ~~~G~d~i~i~d~~~~~~~--isp~~f~e~~~p~-~k~i~~~i~~~g~~~~lH~cG~~-------------~~~~~~l~~ 241 (330)
T cd03465 178 IEAGADGIYISDPWASSSI--LSPEDFKEFSLPY-LKKVFDAIKALGGPVIHHNCGDT-------------APILELMAD 241 (330)
T ss_pred HHhCCCEEEEeCCccccCC--CCHHHHHHHhhHH-HHHHHHHHHHcCCceEEEECCCc-------------hhHHHHHHH
Confidence 4568999999998865210 0000001112444 89999999999999988776221 145788999
Q ss_pred cCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEe
Q 012852 203 WGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (455)
Q Consensus 203 wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~ 241 (455)
.|+|-+-+|.+. .+.++.+..|+.+.+.
T Consensus 242 ~~~d~~~~d~~~-----------dl~~~~~~~g~~~~i~ 269 (330)
T cd03465 242 LGADVFSIDVTV-----------DLAEAKKKVGDKACLM 269 (330)
T ss_pred hCCCeEeecccC-----------CHHHHHHHhCCceEEE
Confidence 999999998874 2445555677665553
No 67
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=68.06 E-value=57 Score=35.75 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCC-----cccCCCCCC--CCHHHHHHHHHhcCCeEEE
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQ-----LVPDTITFP--SGIKALADYVHGKGLKLGI 174 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~-----~~~d~~~FP--~Gl~~l~~~v~~~G~k~Gl 174 (455)
-+...|.+.++.+ +++|++.|.|---+..... ..|. ..+|| +|- +.|+.|++.+|++||++=|
T Consensus 24 G~~~gi~~~l~yl-----~~lG~~~i~l~Pi~~~~~~-~~gY~~~d~~~id~-~~Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 24 GDLRGIIEKLDYL-----KKLGVDYIWLNPFYVSPQK-DNGYDVSDYYAINP-LFGTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred cCHHHHHHhHHHH-----HHcCCCEEEECCcccCCCC-CCCCCccccCccCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3567778888888 7799999988665543211 1122 34554 343 2599999999999999754
No 68
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=67.80 E-value=19 Score=37.35 Aligned_cols=83 Identities=16% Similarity=0.055 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCeEEEEecCC-ccccCCCCcccc-cHHhHHHHHHhcCCcEEEeecCCCCCC--CccchhH----HHHHH
Q 012852 159 KALADYVHGKGLKLGIYSDAG-VFTCQVRPGSLF-HEKDDAPLFASWGVDYLKYDNCFNLGI--EPKKRYP----PMRDA 230 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg-~~~c~~~Pg~~~-~~~~~~~~~~~wGidylK~D~~~~~~~--~~~~~y~----~m~~A 230 (455)
+.++.+.|++|+|+= ...+ ...-...|..+. +++..++.++++|+|.|-+|+-+.... ...+.|. .++++
T Consensus 67 ~~~~~~A~~~~v~v~--~~~~~~~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~ 144 (358)
T cd02875 67 DELLCYAHSKGVRLV--LKGDVPLEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKA 144 (358)
T ss_pred HHHHHHHHHcCCEEE--EECccCHHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHH
Confidence 478889999999963 2211 111134555444 678889999999999999999876532 2234554 45556
Q ss_pred HHhcCCCeeEeeC
Q 012852 231 LNETGCSIFYSLC 243 (455)
Q Consensus 231 L~~~G~~i~~~~c 243 (455)
|.+.++...++++
T Consensus 145 l~~~~~~~~Lsva 157 (358)
T cd02875 145 FKKENPGYQISFD 157 (358)
T ss_pred HhhcCCCcEEEEE
Confidence 6655555556553
No 69
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=66.41 E-value=21 Score=34.38 Aligned_cols=82 Identities=18% Similarity=0.064 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCC
Q 012852 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~ 237 (455)
++.+++.+|..||++=|+..+-... .......+.+....+...+.|+||||.-.-.. .....+.-..|+++..++..|
T Consensus 114 i~~v~~~~~~~gl~vIlE~~l~~~~-~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~p 191 (236)
T PF01791_consen 114 IAAVVEECHKYGLKVILEPYLRGEE-VADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPVP 191 (236)
T ss_dssp HHHHHHHHHTSEEEEEEEECECHHH-BSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSST
T ss_pred HHHHHHHHhcCCcEEEEEEecCchh-hcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCCC
Confidence 8899999999999998884331111 11111233456667778899999999998844 222344556788888877766
Q ss_pred ----eeEe
Q 012852 238 ----IFYS 241 (455)
Q Consensus 238 ----i~~~ 241 (455)
+.++
T Consensus 192 ~~~~Vk~s 199 (236)
T PF01791_consen 192 GKVGVKAS 199 (236)
T ss_dssp TTSEEEEE
T ss_pred cceEEEEe
Confidence 7776
No 70
>PLN00196 alpha-amylase; Provisional
Probab=66.00 E-value=17 Score=38.77 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=71.2
Q ss_pred EEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCc-----ccCCCCCCC--CHHHHHHHHH
Q 012852 94 GWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL-----VPDTITFPS--GIKALADYVH 166 (455)
Q Consensus 94 gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~-----~~d~~~FP~--Gl~~l~~~v~ 166 (455)
.|++|..-+ -....|.+.++.+ +++|++.|-|==-... ....|.+ .+|+++|-+ -|+.|++.+|
T Consensus 32 ~W~~~~~~g--g~~~~i~~kldyL-----~~LGvtaIWL~P~~~s--~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH 102 (428)
T PLN00196 32 NWESWKQNG--GWYNFLMGKVDDI-----AAAGITHVWLPPPSHS--VSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFH 102 (428)
T ss_pred ccCCCCCCC--cCHHHHHHHHHHH-----HHcCCCEEEeCCCCCC--CCCCCCCccccCCCCcccCCCHHHHHHHHHHHH
Confidence 466665432 2466788889988 6789988876543332 1223443 355556642 3999999999
Q ss_pred hcCCeEE-----------------EEecC--Cc----------ccc--------------------------CCCCcccc
Q 012852 167 GKGLKLG-----------------IYSDA--GV----------FTC--------------------------QVRPGSLF 191 (455)
Q Consensus 167 ~~G~k~G-----------------lw~~p--g~----------~~c--------------------------~~~Pg~~~ 191 (455)
++|||+= .|... +. ..| ..+|.+++
T Consensus 103 ~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~ 182 (428)
T PLN00196 103 GKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQR 182 (428)
T ss_pred HCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHH
Confidence 9999952 23210 00 001 23566677
Q ss_pred cHHhHHHHHH-hcCCcEEEeecCC
Q 012852 192 HEKDDAPLFA-SWGVDYLKYDNCF 214 (455)
Q Consensus 192 ~~~~~~~~~~-~wGidylK~D~~~ 214 (455)
++...++-+. +.|||.+.+|...
T Consensus 183 ~l~~~~~wl~~~~GiDG~RlD~ak 206 (428)
T PLN00196 183 ELIGWLLWLKSDIGFDAWRLDFAK 206 (428)
T ss_pred HHHHHHHHHhhCCCCCEEEeehhh
Confidence 7776666664 7899999999874
No 71
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=63.77 E-value=1e+02 Score=37.01 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=55.1
Q ss_pred CHHHHHHHHHhcCCeEEEEec--------------CCc------------ccc-----CCCCcccccHHhHHHHH-HhcC
Q 012852 157 GIKALADYVHGKGLKLGIYSD--------------AGV------------FTC-----QVRPGSLFHEKDDAPLF-ASWG 204 (455)
Q Consensus 157 Gl~~l~~~v~~~G~k~Glw~~--------------pg~------------~~c-----~~~Pg~~~~~~~~~~~~-~~wG 204 (455)
.||.||+.+|++||++=|=+- |+. ..| ..+|.++.++-..+..+ .++|
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~ 635 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFK 635 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 499999999999999754221 111 011 23566677776666665 4899
Q ss_pred CcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEeeCCCC
Q 012852 205 VDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWG 246 (455)
Q Consensus 205 idylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~c~~g 246 (455)
||.+.+|..... ..+....++.++.+..+++++-.-.|.
T Consensus 636 VDGFRfDl~g~~---d~~~~~~~~~~l~~~dP~~~liGE~W~ 674 (1111)
T TIGR02102 636 VDGFRFDMMGDH---DAASIEIAYKEAKAINPNIIMIGEGWR 674 (1111)
T ss_pred CcEEEEeccccC---CHHHHHHHHHHHHHhCcCEEEEEeccc
Confidence 999999987432 223345566666666666665444453
No 72
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=61.99 E-value=56 Score=39.56 Aligned_cols=84 Identities=20% Similarity=0.172 Sum_probs=53.8
Q ss_pred CHHHHHHHHHhcCCeEEEEecC----------------------------C---c----ccc-----CCCCcccccHHhH
Q 012852 157 GIKALADYVHGKGLKLGIYSDA----------------------------G---V----FTC-----QVRPGSLFHEKDD 196 (455)
Q Consensus 157 Gl~~l~~~v~~~G~k~Glw~~p----------------------------g---~----~~c-----~~~Pg~~~~~~~~ 196 (455)
.+|.||+.+|++||++=|=+-. + . ..| ..+|.+..++...
T Consensus 248 efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~ 327 (1221)
T PRK14510 248 EFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDV 327 (1221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHH
Confidence 3999999999999997542211 0 0 012 1256677777777
Q ss_pred HHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeE
Q 012852 197 APLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFY 240 (455)
Q Consensus 197 ~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~ 240 (455)
++.+.+.|||.+.+|-...-+-.+......++..+++...+.++
T Consensus 328 lr~Wv~~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l 371 (1221)
T PRK14510 328 LRSWAKRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVL 371 (1221)
T ss_pred HHHHHHhCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCc
Confidence 77777799999999986544322333335566666665554443
No 73
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=61.76 E-value=28 Score=36.40 Aligned_cols=106 Identities=14% Similarity=0.199 Sum_probs=63.6
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEecC---Cc---------CCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc
Q 012852 103 CNISETIIKETADALVS--TGLAELGYDHVNIDD---CW---------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK 168 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDD---GW---------~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~ 168 (455)
..+|+++|.+.++.+++ .-.+++|++-|.|-. || ...+.|.+|-=.-|.-+| +..+++.|++.
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf---~~eii~~vr~~ 214 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRF---AIEIVEEIKAR 214 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHH---HHHHHHHHHHh
Confidence 45889888888777654 123458999999986 77 222344555433444566 46788888863
Q ss_pred ---CCeEEEEecCCccccC----CCC------cccccH--HhHHHHHHhcCCcEEEee
Q 012852 169 ---GLKLGIYSDAGVFTCQ----VRP------GSLFHE--KDDAPLFASWGVDYLKYD 211 (455)
Q Consensus 169 ---G~k~Glw~~pg~~~c~----~~P------g~~~~~--~~~~~~~~~wGidylK~D 211 (455)
++.+|+=+.+....+. ..| +..... ...++.+.+.|+|||-+-
T Consensus 215 ~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 215 CGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred cCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 5677776665221110 111 111222 355677788888888764
No 74
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=60.73 E-value=52 Score=32.75 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccC
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~ 184 (455)
.+++.+++.|+.+ +++|.+++-.- -++ .|..-..|.--. ..|++.|.++.++.|+.+-- ++
T Consensus 38 e~~~~~~~~A~~l-----k~~g~~~~r~~--~~k-pRTs~~s~~G~g---~~gl~~l~~~~~~~Gl~~~t--e~------ 98 (266)
T PRK13398 38 ESEEQMVKVAEKL-----KELGVHMLRGG--AFK-PRTSPYSFQGLG---EEGLKILKEVGDKYNLPVVT--EV------ 98 (266)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEe--eec-CCCCCCccCCcH---HHHHHHHHHHHHHcCCCEEE--ee------
Confidence 4899999999999 55677654442 223 344322222110 34899999999999998853 22
Q ss_pred CCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEee
Q 012852 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (455)
Q Consensus 185 ~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~ 242 (455)
+-...++.+.+. +|++|+=-.... -..+.+++.++|.|++++.
T Consensus 99 -------~d~~~~~~l~~~-vd~~kIga~~~~-------n~~LL~~~a~~gkPV~lk~ 141 (266)
T PRK13398 99 -------MDTRDVEEVADY-ADMLQIGSRNMQ-------NFELLKEVGKTKKPILLKR 141 (266)
T ss_pred -------CChhhHHHHHHh-CCEEEECccccc-------CHHHHHHHhcCCCcEEEeC
Confidence 122345666677 888888443211 1345566667888888874
No 75
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=60.62 E-value=23 Score=33.73 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCeEEEEecCCcccc---------------CCCCc--ccccHHhHHHHHHhcCCcEEEeecCCCCCCCc
Q 012852 158 IKALADYVHGKGLKLGIYSDAGVFTC---------------QVRPG--SLFHEKDDAPLFASWGVDYLKYDNCFNLGIEP 220 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~~~c---------------~~~Pg--~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~ 220 (455)
...++++||++|||+|+=+.||+..- .-.|| -+.|.+.........-=.|-++|--..++..+
T Consensus 101 ~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~ 180 (224)
T KOG3111|consen 101 PAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGP 180 (224)
T ss_pred HHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCc
Confidence 78899999999999999999996310 22454 57788766554333323344444433333333
Q ss_pred cchhHHHHHHHHhcCCCeeEeeC
Q 012852 221 KKRYPPMRDALNETGCSIFYSLC 243 (455)
Q Consensus 221 ~~~y~~m~~AL~~~G~~i~~~~c 243 (455)
..-+ + ..++|..++++.+
T Consensus 181 ~ti~----~-~a~AGAN~iVaGs 198 (224)
T KOG3111|consen 181 STID----K-AAEAGANMIVAGS 198 (224)
T ss_pred chHH----H-HHHcCCCEEEecc
Confidence 2211 2 2356888887754
No 76
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=59.74 E-value=1.2e+02 Score=29.39 Aligned_cols=121 Identities=19% Similarity=0.210 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecC-CcCCCCCCCCCCcccC-CCCCCCC-HHHHHHHHHhcCCeEEEEecCCc-
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDD-CWSSPLRDLKGQLVPD-TITFPSG-IKALADYVHGKGLKLGIYSDAGV- 180 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDD-GW~~~~rd~~G~~~~d-~~~FP~G-l~~l~~~v~~~G~k~Glw~~pg~- 180 (455)
++.+.+....+...+ .|.+.||+.+.+=+ |=|. .+..+ +-.||+= +.+++..+... .+.|+-+--..
T Consensus 67 ls~~~v~~~lq~~i~-~le~~G~d~illlCTG~F~-------~l~~~~~lleP~ril~~lV~al~~~-~~vGVivP~~eQ 137 (221)
T PF07302_consen 67 LSKKKVEPRLQACIA-QLEAQGYDVILLLCTGEFP-------GLTARNPLLEPDRILPPLVAALVGG-HQVGVIVPLPEQ 137 (221)
T ss_pred EEHHHHHHHHHHHHH-HHHHCCCCEEEEeccCCCC-------CCCCCcceeehHHhHHHHHHHhcCC-CeEEEEecCHHH
Confidence 555555555444322 13668899988854 2221 11111 1234432 67888888776 79999763211
Q ss_pred ----------c---cc--CCCC--cccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHH-hcCCCeeEee
Q 012852 181 ----------F---TC--QVRP--GSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALN-ETGCSIFYSL 242 (455)
Q Consensus 181 ----------~---~c--~~~P--g~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~-~~G~~i~~~~ 242 (455)
. .| ...| +..+-+..-++.++++|.|+|=+|..+.. ..|++.++ .+|.|++++.
T Consensus 138 ~~~~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt--------~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 138 IAQQAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYT--------QEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCC--------HHHHHHHHHHhCCCEEeHH
Confidence 0 01 2233 34555667788999999999999999754 56777775 5899998863
No 77
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=59.26 E-value=68 Score=28.38 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCcccCceEEEecCC----cCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCC
Q 012852 112 ETADALVSTGLAELGYDHVNIDDC----WSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAG 179 (455)
Q Consensus 112 ~~ad~~~~~gl~~~G~~~~~iDDG----W~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg 179 (455)
+.++.+ ++.|++.++|..+ |.-. ....|...+.-+ -+=|+.+++.+|+.||++=+|++.+
T Consensus 4 ~~~~~l-----k~~~v~si~i~a~~h~g~ayY-Pt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 4 QFVDTL-----KEAHVNSITIFAKCHGGYAYY-PTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHH-----HHhCCCEEEEEcccccEEEEc-cCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 445555 6678999999654 2110 111133333322 2337999999999999999999865
No 78
>PLN02361 alpha-amylase
Probab=58.29 E-value=65 Score=34.05 Aligned_cols=101 Identities=13% Similarity=0.071 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCc-----ccCCCCCCC--CHHHHHHHHHhcCCeEEEEecC--
Q 012852 108 TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL-----VPDTITFPS--GIKALADYVHGKGLKLGIYSDA-- 178 (455)
Q Consensus 108 ~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~-----~~d~~~FP~--Gl~~l~~~v~~~G~k~Glw~~p-- 178 (455)
..|.+.++.+ +++|+..|-|=--..... ..|.+ .+| .+|.. .|+.|++.+|++||++=+=+-.
T Consensus 29 ~~i~~kl~~l-----~~lG~t~iwl~P~~~~~~--~~GY~~~d~y~~~-~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 29 RNLEGKVPDL-----AKSGFTSAWLPPPSQSLA--PEGYLPQNLYSLN-SAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHH-----HHcCCCEEEeCCCCcCCC--CCCCCcccccccC-cccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 6777888887 778888887654443211 12333 244 45652 4999999999999996331100
Q ss_pred ----------------Cc-------c--cc--------------------CCCCcccccHHhHHHHHH-hcCCcEEEeec
Q 012852 179 ----------------GV-------F--TC--------------------QVRPGSLFHEKDDAPLFA-SWGVDYLKYDN 212 (455)
Q Consensus 179 ----------------g~-------~--~c--------------------~~~Pg~~~~~~~~~~~~~-~wGidylK~D~ 212 (455)
+. . .| ..+|.+++++...++-+. +.|||.+.+|+
T Consensus 101 ~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDa 180 (401)
T PLN02361 101 RVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDF 180 (401)
T ss_pred ccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 00 0 01 235667777776666666 48999999999
Q ss_pred CCCC
Q 012852 213 CFNL 216 (455)
Q Consensus 213 ~~~~ 216 (455)
...-
T Consensus 181 vk~~ 184 (401)
T PLN02361 181 AKGY 184 (401)
T ss_pred cccC
Confidence 8654
No 79
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=57.90 E-value=12 Score=39.00 Aligned_cols=87 Identities=21% Similarity=0.229 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccCC
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQV 185 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~ 185 (455)
+.+..++.++.| +++|++++-.= =...+ -|++.+-.-++.|.+.+|++||++=+=+.|.
T Consensus 12 ~~~~~~~yi~~a-----~~~Gf~~iFTS--L~ipe--------~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~------ 70 (357)
T PF05913_consen 12 SFEENKAYIEKA-----AKYGFKRIFTS--LHIPE--------DDPEDYLERLKELLKLAKELGMEVIADISPK------ 70 (357)
T ss_dssp -HHHHHHHHHHH-----HCTTEEEEEEE--E-----------------HHHHHHHHHHHHHHCT-EEEEEE-CC------
T ss_pred CHHHHHHHHHHH-----HHCCCCEEECC--CCcCC--------CCHHHHHHHHHHHHHHHHHCCCEEEEECCHH------
Confidence 578888899988 56787765431 11111 1112222249999999999999987655554
Q ss_pred CCcccccH---HhHHHHHHhcCCcEEEeecCCCC
Q 012852 186 RPGSLFHE---KDDAPLFASWGVDYLKYDNCFNL 216 (455)
Q Consensus 186 ~Pg~~~~~---~~~~~~~~~wGidylK~D~~~~~ 216 (455)
++.++ ..+++.|+++||+.|.+|+-...
T Consensus 71 ---~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~~ 101 (357)
T PF05913_consen 71 ---VLKKLGISYDDLSFFKELGIDGLRLDYGFSG 101 (357)
T ss_dssp ---HHHTTT-BTTBTHHHHHHT-SEEEESSS-SC
T ss_pred ---HHHHcCCCHHHHHHHHHcCCCEEEECCCCCH
Confidence 34444 23467899999999999998655
No 80
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=56.82 E-value=61 Score=33.72 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCC-CCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccC
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDL-KGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~-~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~ 184 (455)
+++.+++.|..+ ++.|+.++- .|.+. .|.. +|..-+.. +|++.|.++.++.|+.|-- +|
T Consensus 130 ~~~~~~~~A~~l-----k~~g~~~~r--~~~~k-pRtsp~~f~g~~~----e~l~~L~~~~~~~Gl~~~t--~v------ 189 (360)
T PRK12595 130 SYEQVEAVAKAL-----KAKGLKLLR--GGAFK-PRTSPYDFQGLGV----EGLKILKQVADEYGLAVIS--EI------ 189 (360)
T ss_pred CHHHHHHHHHHH-----HHcCCcEEE--ccccC-CCCCCccccCCCH----HHHHHHHHHHHHcCCCEEE--ee------
Confidence 689999999998 557776554 45555 3433 22211221 4899999999999998742 22
Q ss_pred CCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEee
Q 012852 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (455)
Q Consensus 185 ~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~ 242 (455)
|-...++.+.+. +|++|+=-.... . ..+.+++.++|.|++++.
T Consensus 190 -------~d~~~~~~l~~~-vd~lkI~s~~~~------n-~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 190 -------VNPADVEVALDY-VDVIQIGARNMQ------N-FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred -------CCHHHHHHHHHh-CCeEEECccccc------C-HHHHHHHHccCCcEEEeC
Confidence 223456777888 999998543211 1 245666667788888763
No 81
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=56.62 E-value=44 Score=38.98 Aligned_cols=86 Identities=17% Similarity=0.262 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCeEEEEec-------------------CCc------------ccc-----CCCCcccccHHhHHHHH-
Q 012852 158 IKALADYVHGKGLKLGIYSD-------------------AGV------------FTC-----QVRPGSLFHEKDDAPLF- 200 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~-------------------pg~------------~~c-----~~~Pg~~~~~~~~~~~~- 200 (455)
+|.||+.+|++||++=|=+- |+. .+| ..+|.++.|+...++.+
T Consensus 406 fk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~ 485 (898)
T TIGR02103 406 FREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWA 485 (898)
T ss_pred HHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999754221 110 122 23566677776666765
Q ss_pred HhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEeeCCCC
Q 012852 201 ASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWG 246 (455)
Q Consensus 201 ~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~c~~g 246 (455)
.++|||.+.+|-...- +.+....+++++++..+++++-.-.|.
T Consensus 486 ~ey~VDGFRfDlm~~~---~~~f~~~~~~~l~~i~pdi~l~GEgW~ 528 (898)
T TIGR02103 486 KDYKVDGFRFDLMGHH---PKAQMLAAREAIKALTPEIYFYGEGWD 528 (898)
T ss_pred HHcCCCEEEEechhhC---CHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 4899999999987544 344556778888888888877766675
No 82
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=55.41 E-value=19 Score=33.48 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=32.2
Q ss_pred cEEEEEEecCCCceeEEEEceecCCCCCCceEEEEccCCccccccccceE-----EEEEcCCCEEEEEE
Q 012852 382 RLVVALWNRCPKAETITAQWDALGLESSTKVSVRDLWQHKQVTGDAVSSF-----GAQVDAHDCQMYIF 445 (455)
Q Consensus 382 ~~avalfN~~~~~~~iti~l~~LGL~~~~~~~vrDlW~g~~~~g~~~~~l-----~~~L~pH~~~ll~l 445 (455)
+.+|++||.+.++++++++ ++.+ ++++.+=.........+.++ +++||++.++||.-
T Consensus 105 ~~iVVvfNat~~~~t~~~~----~~~g---~~Lhpvq~~~~D~~v~~a~~~~~~G~~tVPa~T~aVFv~ 166 (168)
T PF11852_consen 105 DGIVVVFNATPEEQTFTVP----GLAG---FQLHPVQAESSDPVVKQASFDAANGTFTVPARTVAVFVQ 166 (168)
T ss_dssp EEEEEEEE-SSS-EEEETG----GGSS----EE-HHHHTGSGTTGGGTEEETTTTEEEE-TTEEEEEEE
T ss_pred CeEEEEEeCCCCeEEEEcC----CcCc---eEechHHhcccchhhhceeEecCCCeEEECCceEEEEEe
Confidence 4588999999998887654 2222 67776665422101112223 67899999999864
No 83
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=54.43 E-value=20 Score=35.60 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=57.8
Q ss_pred cccCceEEEecCCcCCCCCCCCCCcccCCCC-----CCCCHHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHH
Q 012852 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTIT-----FPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDA 197 (455)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~-----FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~ 197 (455)
.++|.+.++|||-|..... ...+++. .|. ++.++++++..|.+.+++++-+. ....
T Consensus 154 ~eaG~d~i~i~dp~~~~~~-----~~is~~~~~e~~~p~-~k~i~~~i~~~~~~~~lH~cg~~-------------~~~~ 214 (306)
T cd00465 154 IEAGAKALQIHEPAFSQIN-----SFLGPKMFKKFALPA-YKKVAEYKAAGEVPIVHHSCYDA-------------ADLL 214 (306)
T ss_pred HHhCCCEEEEecccccccC-----CCCCHHHHHHHHHHH-HHHHHHHHhhcCCceEEEECCCH-------------HHHH
Confidence 5679999999999986310 0111111 233 78889988888888887554321 3457
Q ss_pred HHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeE
Q 012852 198 PLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFY 240 (455)
Q Consensus 198 ~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~ 240 (455)
..+.+.|+|.+-+|+.. . .+.++.+..|.++.+
T Consensus 215 ~~l~~~~~d~~~~d~~~-~---------d~~~~~~~~~~~~~i 247 (306)
T cd00465 215 EEMIQLGVDVISFDMTV-N---------EPKEAIEKVGEKKTL 247 (306)
T ss_pred HHHHHhCcceEeccccc-C---------CHHHHHHHhCCCEEE
Confidence 77889999999999874 1 233555566655433
No 84
>smart00642 Aamy Alpha-amylase domain.
Probab=53.48 E-value=40 Score=30.94 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCC--CCCCCc-----ccCCCCCC--CCHHHHHHHHHhcCCeEEEEe
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLR--DLKGQL-----VPDTITFP--SGIKALADYVHGKGLKLGIYS 176 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~r--d~~G~~-----~~d~~~FP--~Gl~~l~~~v~~~G~k~Glw~ 176 (455)
|-+.+.+.++.+ +++|++.|.|=-=+..... ...|.. .+|+ +|- +.|+.|++.+|++||++=+=+
T Consensus 17 ~~~gi~~~l~yl-----~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 17 DLQGIIEKLDYL-----KDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP-RFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CHHHHHHHHHHH-----HHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 345667777777 7789998877433322110 111222 2332 332 359999999999999976533
No 85
>PRK03705 glycogen debranching enzyme; Provisional
Probab=52.98 E-value=1.1e+02 Score=34.68 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=41.8
Q ss_pred CHHHHHHHHHhcCCeEEEEecC-----------------------------Cc----ccc-----CCCCcccccHHhHHH
Q 012852 157 GIKALADYVHGKGLKLGIYSDA-----------------------------GV----FTC-----QVRPGSLFHEKDDAP 198 (455)
Q Consensus 157 Gl~~l~~~v~~~G~k~Glw~~p-----------------------------g~----~~c-----~~~Pg~~~~~~~~~~ 198 (455)
.+|.||+.+|++||++=|=+-. +. ..| ..+|.+++|+...++
T Consensus 243 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~ 322 (658)
T PRK03705 243 EFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLR 322 (658)
T ss_pred HHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHH
Confidence 3999999999999996542211 00 012 236777788877777
Q ss_pred HHH-hcCCcEEEeecCCCC
Q 012852 199 LFA-SWGVDYLKYDNCFNL 216 (455)
Q Consensus 199 ~~~-~wGidylK~D~~~~~ 216 (455)
.+. ++|||.+.+|-...-
T Consensus 323 ~W~~e~gVDGFRfD~a~~l 341 (658)
T PRK03705 323 YWVETCHVDGFRFDLATVL 341 (658)
T ss_pred HHHHHhCCCEEEEEcHhhh
Confidence 765 689999999986543
No 86
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=51.01 E-value=46 Score=33.84 Aligned_cols=100 Identities=15% Similarity=0.046 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCC--CCcccCCCCCCC----CHHHHHHHHHhcCCeEEEEec
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK--GQLVPDTITFPS----GIKALADYVHGKGLKLGIYSD 177 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~--G~~~~d~~~FP~----Gl~~l~~~v~~~G~k~Glw~~ 177 (455)
--+.+.=+++++.+.+ .|++.++- ...-|.+ ..|. +.+|. -|+.|++..++.|++|+.=+.
T Consensus 11 PWs~e~R~~l~~f~~~-----~kmN~YiY-----APKdDpyhr~~Wr---e~Yp~~el~~l~~L~~~a~~~~V~Fv~ais 77 (306)
T PF07555_consen 11 PWSHEDRLDLIRFLGR-----YKMNTYIY-----APKDDPYHRSKWR---EPYPEEELAELKELADAAKANGVDFVYAIS 77 (306)
T ss_dssp ---HHHHHHHHHHHHH-----TT--EEEE-------TT-TTTTTTTT---S---HHHHHHHHHHHHHHHHTT-EEEEEEB
T ss_pred CCCHHHHHHHHHHHHH-----cCCceEEE-----CCCCChHHHhhhc---ccCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 5678888999999955 45554442 2222222 1332 34453 499999999999999999999
Q ss_pred CCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCC
Q 012852 178 AGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNL 216 (455)
Q Consensus 178 pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~ 216 (455)
||...|-+.+...+-+..-++++.+.||+.+=+=|-..+
T Consensus 78 Pg~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 116 (306)
T PF07555_consen 78 PGLDICYSSEEDFEALKAKFDQLYDLGVRSFAILFDDID 116 (306)
T ss_dssp GTTT--TSHHHHHHHHHHHHHHHHCTT--EEEEE-TS-S
T ss_pred cccccccCcHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Confidence 998777554444445556667889999998877665443
No 87
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=50.92 E-value=69 Score=32.66 Aligned_cols=102 Identities=22% Similarity=0.279 Sum_probs=61.0
Q ss_pred cCCCHHHHHHHHHHHHHc--CCcccCceEEEecC--Cc---------CCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-
Q 012852 103 CNISETIIKETADALVST--GLAELGYDHVNIDD--CW---------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~--gl~~~G~~~~~iDD--GW---------~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~- 168 (455)
..+|+++|.+..+.+++. ..++.|++-|.|-. |+ ...+.|.+|--.-+.-+| +..+++.|++.
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf---~~eiv~aIR~~v 218 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRF---LLEVVDAVRAVW 218 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHH---HHHHHHHHHHHc
Confidence 468998888887766542 34568999998876 33 222344454333333455 56888888864
Q ss_pred --CCeEEEEecCCccccCCCCccccc--HHhHHHHHHhcCCcEEEee
Q 012852 169 --GLKLGIYSDAGVFTCQVRPGSLFH--EKDDAPLFASWGVDYLKYD 211 (455)
Q Consensus 169 --G~k~Glw~~pg~~~c~~~Pg~~~~--~~~~~~~~~~wGidylK~D 211 (455)
++.+|+=+.+... + ++.... ....++.+.+.|+|||-+-
T Consensus 219 G~d~~v~vri~~~~~-~---~~g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 219 PEDKPLFVRISATDW-V---EGGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CCCceEEEEEccccc-C---CCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 4556655444211 1 111222 2356678889999999863
No 88
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=50.72 E-value=58 Score=32.23 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCC-CCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccC
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDL-KGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~-~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~ 184 (455)
+++.+++.|..+.+ .|.+ +.. .+.++ .|.. +|..-+. -.|++.|.++.++.|+.+-- +|
T Consensus 37 ~~~~~~~~A~~lk~-----~~~k-~~r-~~~~K-pRtsp~s~~g~g----~~gl~~l~~~~~~~Gl~~~t--~~------ 96 (260)
T TIGR01361 37 SEEQIMETARFVKE-----AGAK-ILR-GGAFK-PRTSPYSFQGLG----EEGLKLLRRAADEHGLPVVT--EV------ 96 (260)
T ss_pred CHHHHHHHHHHHHH-----HHHH-hcc-Cceec-CCCCCccccccH----HHHHHHHHHHHHHhCCCEEE--ee------
Confidence 78999999999844 4444 222 45555 3443 2222212 24899999999999998853 22
Q ss_pred CCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEee
Q 012852 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (455)
Q Consensus 185 ~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~ 242 (455)
|-...++.+.+. +|++|+=-.... -..+.+++.++|.|++++.
T Consensus 97 -------~d~~~~~~l~~~-~d~lkI~s~~~~-------n~~LL~~~a~~gkPVilk~ 139 (260)
T TIGR01361 97 -------MDPRDVEIVAEY-ADILQIGARNMQ-------NFELLKEVGKQGKPVLLKR 139 (260)
T ss_pred -------CChhhHHHHHhh-CCEEEECccccc-------CHHHHHHHhcCCCcEEEeC
Confidence 222345666777 899998543211 1346677778889988874
No 89
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.67 E-value=55 Score=32.98 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=63.6
Q ss_pred cCCCHHHHHHHHHHHHHc--CCcccCceEEEecCC--cC---------CCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-
Q 012852 103 CNISETIIKETADALVST--GLAELGYDHVNIDDC--WS---------SPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~--gl~~~G~~~~~iDDG--W~---------~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~- 168 (455)
...|.++|.+..+.+++. ..+++|++-|.|-.+ +. ..+.|.+|--.-+..+| +..+++.|++.
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~---~~eii~avr~~~ 205 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARF---LLEIVAAVREAV 205 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHH---HHHHHHHHHHHc
Confidence 358888888887776542 345689999988764 31 11233443222233344 56788888764
Q ss_pred --CCeEEEEecCCccccCCCCc--ccccHHhHHHHHHhcCCcEEEeecCC
Q 012852 169 --GLKLGIYSDAGVFTCQVRPG--SLFHEKDDAPLFASWGVDYLKYDNCF 214 (455)
Q Consensus 169 --G~k~Glw~~pg~~~c~~~Pg--~~~~~~~~~~~~~~wGidylK~D~~~ 214 (455)
++.+|+=+.+.... ++ ..+-....++.+.+.|+|||.+-...
T Consensus 206 g~d~~i~vris~~~~~----~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 206 GPDFPVGVRLSADDFV----PGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred CCCceEEEEechhccC----CCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 56677766654211 11 11223456788999999999876543
No 90
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=50.37 E-value=85 Score=34.17 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=47.5
Q ss_pred HHhhccHhHHhhccCCCC--CccEEeeecCC--CCceeEEEEEcCCCcEEEEEEecCCCceeEEEEceecCCCCCCceEE
Q 012852 339 FEILSNKEVIAVNQDPLG--VQGRKVYVSGT--DNCLQVWVGPLSGHRLVVALWNRCPKAETITAQWDALGLESSTKVSV 414 (455)
Q Consensus 339 ~~lL~N~e~iainQd~lG--~~~r~v~~~~~--~~~~~vw~~~l~dg~~avalfN~~~~~~~iti~l~~LGL~~~~~~~v 414 (455)
-++.++++.-++-|-+.- .-+++|..... +..+++-+-...||+.+|+++|.+++++.++|.+.+
T Consensus 405 ~~~~~~p~yY~~gHfSKFV~PGa~RI~st~~~~~~~l~~vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~----------- 473 (496)
T PF02055_consen 405 GEFYKQPEYYAMGHFSKFVRPGAVRIGSTSSSSDSGLEAVAFLNPDGSIVVVVLNRGDSDQNFSVTVKD----------- 473 (496)
T ss_dssp TEEEE-HHHHHHHHHHTTS-TT-EEEEEEESSSTTTEEEEEEEETTSEEEEEEEE-SSS-EEEEEEEEC-----------
T ss_pred CeEEEcHHHHHHHHHhcccCCCCEEEEeeccCCCCceeEEEEECCCCCEEEEEEcCCCCccceEEEEec-----------
Confidence 456777776665442111 11355653321 113555555667999999999999998887665542
Q ss_pred EEccCCccccccccceEEEEEcCCCEEEEE
Q 012852 415 RDLWQHKQVTGDAVSSFGAQVDAHDCQMYI 444 (455)
Q Consensus 415 rDlW~g~~~~g~~~~~l~~~L~pH~~~ll~ 444 (455)
-.. ....+.++||||+++=+.
T Consensus 474 --~~~-------~~~~~~~~lp~~s~~t~~ 494 (496)
T PF02055_consen 474 --GSK-------GNNHFNVTLPPRSIVTTY 494 (496)
T ss_dssp --TTT-------EE--EEEEEE-TTEEEEE
T ss_pred --CCc-------ceeEEEEEeCCCceEEEE
Confidence 111 113578999999887554
No 91
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=48.93 E-value=36 Score=34.55 Aligned_cols=89 Identities=20% Similarity=0.099 Sum_probs=57.9
Q ss_pred cccCceEEEecCCcCCCCCCCCCCcccC---CCCCCCCHHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHH
Q 012852 123 AELGYDHVNIDDCWSSPLRDLKGQLVPD---TITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPL 199 (455)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d---~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~ 199 (455)
.+.|.+.|+++|.|.... -+.+. .=..|. ++.+++.+|+.|-.++++++-.. ......
T Consensus 190 ~~~Gad~I~i~dp~a~~~-----~lsp~~f~e~~~p~-~k~i~~~i~~~g~~~ilH~CG~~-------------~~~~~~ 250 (340)
T TIGR01463 190 VEAGADVIAIADPFASSD-----LISPETYKEFGLPY-QKRLFAYIKEIGGITVLHICGFT-------------QPILRD 250 (340)
T ss_pred HHcCCCEEEecCCccCcc-----ccCHHHHHHHHHHH-HHHHHHHHHhcCCceEEEECCCc-------------hhhHHH
Confidence 568999999999886421 11111 111244 89999999998877777665321 234667
Q ss_pred HHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEe
Q 012852 200 FASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (455)
Q Consensus 200 ~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~ 241 (455)
+.+.|+|-+-+|++.. |.++-+..|.++.+.
T Consensus 251 l~~~g~d~ls~d~~~~-----------l~~~~~~~g~~~~i~ 281 (340)
T TIGR01463 251 IANNGCFGFSVDMKPG-----------MDHAKRVIGGQASLV 281 (340)
T ss_pred HHHhCCCEEeecCCCC-----------HHHHHHHcCCceEEE
Confidence 8889999988887631 445555667666543
No 92
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=48.42 E-value=54 Score=33.73 Aligned_cols=93 Identities=17% Similarity=0.267 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCC--------CCCCc---ccCCCCCC-CCHHHHHHHHHhcCCeEE
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRD--------LKGQL---VPDTITFP-SGIKALADYVHGKGLKLG 173 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd--------~~G~~---~~d~~~FP-~Gl~~l~~~v~~~G~k~G 173 (455)
+-+.-+++++.+++.|....-+..+..|.---..... +.|.- ....-.|| ++++.|.++.+++|+.|-
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 93 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL 93 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence 5678889999987766444334444333321111000 00100 01112244 478999999999999874
Q ss_pred EEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 174 IYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 174 lw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
.+| |-...++.+.+.|++.+|+=-.
T Consensus 94 --stp-------------fd~~svd~l~~~~v~~~KIaS~ 118 (329)
T TIGR03569 94 --STP-------------FDLESADFLEDLGVPRFKIPSG 118 (329)
T ss_pred --EEe-------------CCHHHHHHHHhcCCCEEEECcc
Confidence 222 2234578888999999999654
No 93
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=47.41 E-value=36 Score=32.35 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCeEEEEecCCc
Q 012852 158 IKALADYVHGKGLKLGIYSDAGV 180 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~ 180 (455)
+..+++++|++|+|+||-+.|++
T Consensus 94 ~~~~i~~ik~~g~k~GialnP~T 116 (201)
T PF00834_consen 94 PKETIKYIKEAGIKAGIALNPET 116 (201)
T ss_dssp HHHHHHHHHHTTSEEEEEE-TTS
T ss_pred HHHHHHHHHHhCCCEEEEEECCC
Confidence 78999999999999999999986
No 94
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=46.98 E-value=1.1e+02 Score=30.41 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCeEEEEecCCccccCCC-CcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCC
Q 012852 158 IKALADYVHGKGLKLGIYSDAGVFTCQVR-PGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGC 236 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~~~c~~~-Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~ 236 (455)
+..+++..|+.||-.=+|.-|-....... ....+.+...+++=++.|.|.||.++.... ..++++.+.++-
T Consensus 132 ~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~--------e~F~~vv~~~~v 203 (265)
T COG1830 132 ISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP--------ESFRRVVAACGV 203 (265)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh--------HHHHHHHHhCCC
Confidence 77888889999999999987632111110 111222233344557999999999997543 456777777888
Q ss_pred CeeEe
Q 012852 237 SIFYS 241 (455)
Q Consensus 237 ~i~~~ 241 (455)
|++++
T Consensus 204 pVvia 208 (265)
T COG1830 204 PVVIA 208 (265)
T ss_pred CEEEe
Confidence 88776
No 95
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=46.98 E-value=53 Score=32.15 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHH----Hh
Q 012852 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDAL----NE 233 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL----~~ 233 (455)
++.++.++|++|+++.| +-+-. + ..-+..+++..+|+||+|-..............+-++| +.
T Consensus 138 ~~~~l~~L~~~G~~ial--DDFGt---------G--~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~ 204 (256)
T COG2200 138 ALALLRQLRELGVRIAL--DDFGT---------G--YSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHK 204 (256)
T ss_pred HHHHHHHHHHCCCeEEE--ECCCC---------C--HHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHH
Confidence 78899999999976654 32110 0 12467788999999999998766543322333333333 45
Q ss_pred cCCCeeEeeCC
Q 012852 234 TGCSIFYSLCE 244 (455)
Q Consensus 234 ~G~~i~~~~c~ 244 (455)
.|-.++.+.++
T Consensus 205 l~~~vvaEGVE 215 (256)
T COG2200 205 LGLTVVAEGVE 215 (256)
T ss_pred CCCEEEEeecC
Confidence 56667776543
No 96
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=46.48 E-value=41 Score=32.61 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEee
Q 012852 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYD 211 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D 211 (455)
|+.+++.+|++|+++.+|..|.. ....+.+.++|||+|=.|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~~~-------------~~~~~~l~~~GVd~I~TD 227 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTPDR-------------PNVWKTLMELGVDLLNTD 227 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccCCh-------------HHHHHHHHHhCCCEEecC
Confidence 78889999999999999997741 345678889999998766
No 97
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=46.47 E-value=1.4e+02 Score=30.56 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=56.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccc
Q 012852 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~ 182 (455)
..++.+.+++.++.+ +++|+..|.+-+ |..... |+ +..++++++++|+.+.|-+. |..
T Consensus 35 ~~l~~e~~~~ii~~~-----~~~g~~~v~~~G----------GEPll~----~~-~~~ii~~~~~~g~~~~l~TN-G~l- 92 (358)
T TIGR02109 35 AELTTEEWTDVLTQA-----AELGVLQLHFSG----------GEPLAR----PD-LVELVAHARRLGLYTNLITS-GVG- 92 (358)
T ss_pred CCCCHHHHHHHHHHH-----HhcCCcEEEEeC----------cccccc----cc-HHHHHHHHHHcCCeEEEEeC-Ccc-
Confidence 357889999999988 456776676532 233333 33 88999999999999887443 221
Q ss_pred cCCCCcccccHHhHHHHHHhcCCcEEEeecCCC
Q 012852 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFN 215 (455)
Q Consensus 183 c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~ 215 (455)
--+..++.+++.|++.|.+..-..
T Consensus 93 ---------l~~e~~~~L~~~g~~~v~iSldg~ 116 (358)
T TIGR02109 93 ---------LTEARLDALADAGLDHVQLSFQGV 116 (358)
T ss_pred ---------CCHHHHHHHHhCCCCEEEEeCcCC
Confidence 013467778889999887766543
No 98
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=46.03 E-value=69 Score=37.02 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=47.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcc-----cCCCCCC--CCHHHHHHHHHhcCCeEEEE
Q 012852 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-----PDTITFP--SGIKALADYVHGKGLKLGIY 175 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~-----~d~~~FP--~Gl~~l~~~v~~~G~k~Glw 175 (455)
.+.|-+.+.+.++.+ +++|++.+.|=--+........|... +|+ .|- ++++.|++.+|++||++=+=
T Consensus 11 ~~~tf~~~~~~L~YL-----~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp-~lGt~edf~~Lv~aah~~Gm~vIlD 84 (825)
T TIGR02401 11 AGFTFDDAAALLPYL-----KSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINP-ELGGEEGLRRLSEAARARGLGLIVD 84 (825)
T ss_pred CCCCHHHHHHhhHHH-----HHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 367888999999999 77999998876655432222234443 343 333 36999999999999997553
Q ss_pred e
Q 012852 176 S 176 (455)
Q Consensus 176 ~ 176 (455)
+
T Consensus 85 i 85 (825)
T TIGR02401 85 I 85 (825)
T ss_pred e
Confidence 3
No 99
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=45.96 E-value=78 Score=28.97 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred CCcEEEEEEecCCCceeEEEEceecCC
Q 012852 380 GHRLVVALWNRCPKAETITAQWDALGL 406 (455)
Q Consensus 380 dg~~avalfN~~~~~~~iti~l~~LGL 406 (455)
+++.+|.++|++.++++++|.+.....
T Consensus 103 ~~~l~v~vVN~~~~~~~v~l~l~g~~~ 129 (177)
T PF06964_consen 103 GGELYVKVVNRSSEPQTVTLNLQGFSP 129 (177)
T ss_dssp TTEEEEEEEE-SSSBEEEEEEETTSTS
T ss_pred CCEEEEEEEECCCCCEEEEEEEcCCCC
Confidence 447899999999888888888875443
No 100
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=45.37 E-value=79 Score=31.91 Aligned_cols=87 Identities=14% Similarity=0.014 Sum_probs=53.7
Q ss_pred CHHHHHHHHHhcCCeEEEEecCCcc-ccCCCC-cccccHHhHHHHHHhcCCcEEEeecCCCCCCC----ccchhHHHHHH
Q 012852 157 GIKALADYVHGKGLKLGIYSDAGVF-TCQVRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGIE----PKKRYPPMRDA 230 (455)
Q Consensus 157 Gl~~l~~~v~~~G~k~Glw~~pg~~-~c~~~P-g~~~~~~~~~~~~~~wGidylK~D~~~~~~~~----~~~~y~~m~~A 230 (455)
.++.-++.+|++|.|+-|-+--... .....+ ....+.+...+.+.++|+|.|=+|+-+..... ..+.|..+.+.
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~ 140 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQ 140 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHH
Confidence 5788888999999998766532110 001122 23456677788899999999999997654221 12444444445
Q ss_pred HHh-cCCCeeEeeC
Q 012852 231 LNE-TGCSIFYSLC 243 (455)
Q Consensus 231 L~~-~G~~i~~~~c 243 (455)
|++ .+.+.+++..
T Consensus 141 lr~~~~~~~~lT~A 154 (312)
T cd02871 141 LKDHYGPNFILTMA 154 (312)
T ss_pred HHHHcCCCeEEEEC
Confidence 543 3556677653
No 101
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=45.04 E-value=38 Score=33.61 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
+.+++.+|++|+++..|+.+... ...++.+.++|||.|-.|++
T Consensus 248 ~~~v~~~~~~Gl~v~~wTv~~n~------------~~~~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 248 PSQIELAKSLGLVVFCWGDDLND------------PENRKKLKELGVDGLIYDRI 290 (290)
T ss_pred hHHHHHHHHcCCEEEEECCCCCC------------HHHHHHHHHcCCCEEEecCC
Confidence 46899999999999999873110 23577889999999998864
No 102
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=44.50 E-value=53 Score=30.67 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhH----HHHHHHH
Q 012852 157 GIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYP----PMRDALN 232 (455)
Q Consensus 157 Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~----~m~~AL~ 232 (455)
.++.++..+++.|++++| +- ++.-...+..+.++.+||||+|............+. .+....+
T Consensus 133 ~~~~~~~~l~~~G~~l~l--d~-----------~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~ 199 (240)
T cd01948 133 EALATLRRLRALGVRIAL--DD-----------FGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH 199 (240)
T ss_pred HHHHHHHHHHHCCCeEEE--eC-----------CCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH
Confidence 388999999999999887 11 111223467788999999999986544322222222 2333333
Q ss_pred hcCCCeeEeeC
Q 012852 233 ETGCSIFYSLC 243 (455)
Q Consensus 233 ~~G~~i~~~~c 243 (455)
..|-+++....
T Consensus 200 ~~~~~via~gV 210 (240)
T cd01948 200 SLGLKVVAEGV 210 (240)
T ss_pred HCCCeEEEEec
Confidence 45666666643
No 103
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=44.42 E-value=1.1e+02 Score=28.12 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=65.2
Q ss_pred cCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc--CCeEEEEecCCccc----cCCCCcc-cccHHhHH
Q 012852 125 LGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK--GLKLGIYSDAGVFT----CQVRPGS-LFHEKDDA 197 (455)
Q Consensus 125 ~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~--G~k~Glw~~pg~~~----c~~~Pg~-~~~~~~~~ 197 (455)
.++.++++. |... +.+|....+.....+.....+..++++ |+|+-+-+.-.... ....|.. ..+.+...
T Consensus 22 ~~~thvi~~--f~~v--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~ 97 (210)
T cd00598 22 SLCTHIIYA--FAEI--SSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLV 97 (210)
T ss_pred ccCCEEEEe--eEEE--CCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHH
Confidence 456666664 4332 223333221122233466677788887 88876655322111 1223332 34567788
Q ss_pred HHHHhcCCcEEEeecCCCCCCC--ccchhHHHHHHHHhc-CC-CeeEeeC
Q 012852 198 PLFASWGVDYLKYDNCFNLGIE--PKKRYPPMRDALNET-GC-SIFYSLC 243 (455)
Q Consensus 198 ~~~~~wGidylK~D~~~~~~~~--~~~~y~~m~~AL~~~-G~-~i~~~~c 243 (455)
+.+.++|+|.|=+|+-+..... ..+.|..+.+.|++. ++ ..++++.
T Consensus 98 ~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a 147 (210)
T cd00598 98 SFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIA 147 (210)
T ss_pred HHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEE
Confidence 8899999999999998765432 246676666666543 22 4566654
No 104
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=44.35 E-value=76 Score=36.94 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=47.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcc-----cCCCCCC--CCHHHHHHHHHhcCCeEEEE
Q 012852 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-----PDTITFP--SGIKALADYVHGKGLKLGIY 175 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~-----~d~~~FP--~Gl~~l~~~v~~~G~k~Glw 175 (455)
.+.+-+.+.+.++.+ +++|++.+.|=--+........|... +|+ .|. ++++.|++.+|++||++=+=
T Consensus 15 ~~~tf~~~~~~l~YL-----~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp-~lGt~e~f~~Lv~aah~~Gi~VIlD 88 (879)
T PRK14511 15 AGFTFDDAAELVPYF-----ADLGVSHLYLSPILAARPGSTHGYDVVDHTRINP-ELGGEEGLRRLAAALRAHGMGLILD 88 (879)
T ss_pred CCCCHHHHHHHhHHH-----HHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 367889999999999 67999988876544432122234332 443 333 36999999999999997654
Q ss_pred e
Q 012852 176 S 176 (455)
Q Consensus 176 ~ 176 (455)
+
T Consensus 89 i 89 (879)
T PRK14511 89 I 89 (879)
T ss_pred e
Confidence 4
No 105
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=44.15 E-value=86 Score=32.23 Aligned_cols=102 Identities=24% Similarity=0.297 Sum_probs=63.2
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEecCCc-----------CCCCCCCC-CCcccCCCCCCCCHHHHHHHHHhc
Q 012852 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDCW-----------SSPLRDLK-GQLVPDTITFPSGIKALADYVHGK 168 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW-----------~~~~rd~~-G~~~~d~~~FP~Gl~~l~~~v~~~ 168 (455)
..+|+++|.+.++.+++ ...+++|++-|.|-.|= ...+.|.+ |+ .-|..+| +..+++.|++.
T Consensus 130 ~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGs-lenR~Rf---~~eii~~ir~~ 205 (337)
T PRK13523 130 VEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGS-PENRYRF---LREIIDAVKEV 205 (337)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCC-HHHHHHH---HHHHHHHHHHh
Confidence 46899999988877654 23456899999997761 11123444 44 3344566 45788888775
Q ss_pred -CCeEEEEecCCccccCCCCccc--ccHHhHHHHHHhcCCcEEEeec
Q 012852 169 -GLKLGIYSDAGVFTCQVRPGSL--FHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 169 -G~k~Glw~~pg~~~c~~~Pg~~--~~~~~~~~~~~~wGidylK~D~ 212 (455)
++.+|+=+.+... .++.. +-....++.|.+.|+|||-+-.
T Consensus 206 ~~~~v~vRis~~d~----~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 206 WDGPLFVRISASDY----HPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred cCCCeEEEeccccc----CCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5667776655321 12211 1223566778889999998754
No 106
>PRK08508 biotin synthase; Provisional
Probab=43.40 E-value=85 Score=31.20 Aligned_cols=80 Identities=11% Similarity=-0.033 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEe-cCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCcccc
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNI-DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~i-DDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c 183 (455)
++.+.|.+.|+.+. +.|+..|.+ ++ +... ++..|. =+..+++.|++.+....++...|..
T Consensus 40 ~s~eeI~~~a~~a~-----~~g~~~~~lv~s-g~~~----------~~~~~e-~~~ei~~~ik~~~p~l~i~~s~G~~-- 100 (279)
T PRK08508 40 KDIEQIVQEAKMAK-----ANGALGFCLVTS-GRGL----------DDKKLE-YVAEAAKAVKKEVPGLHLIACNGTA-- 100 (279)
T ss_pred CCHHHHHHHHHHHH-----HCCCCEEEEEec-cCCC----------CcccHH-HHHHHHHHHHhhCCCcEEEecCCCC--
Confidence 78999999999884 457777766 43 3221 111111 2677788898887666666555432
Q ss_pred CCCCcccccHHhHHHHHHhcCCcEEEeec
Q 012852 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 184 ~~~Pg~~~~~~~~~~~~~~wGidylK~D~ 212 (455)
-+..++.|++.|+|.+-.+.
T Consensus 101 ---------~~e~l~~Lk~aGld~~~~~l 120 (279)
T PRK08508 101 ---------SVEQLKELKKAGIFSYNHNL 120 (279)
T ss_pred ---------CHHHHHHHHHcCCCEEcccc
Confidence 14578889999999888764
No 107
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=43.35 E-value=25 Score=34.09 Aligned_cols=124 Identities=21% Similarity=0.263 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCc-----ccCCCCCCC--CHHHHHHHHHhcCCeEEEEecCC
Q 012852 107 ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL-----VPDTITFPS--GIKALADYVHGKGLKLGIYSDAG 179 (455)
Q Consensus 107 e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~-----~~d~~~FP~--Gl~~l~~~v~~~G~k~Glw~~pg 179 (455)
-+.|.+.++.+ +++|++.|.|=--+.... ...|.+ .+|+ +|-. .++.|++.+|++||++=+=+.+.
T Consensus 3 ~~gi~~kLdyl-----~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~N 75 (316)
T PF00128_consen 3 FRGIIDKLDYL-----KDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPN 75 (316)
T ss_dssp HHHHHHTHHHH-----HHHTESEEEESS-EESSS-STTTTSESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETS
T ss_pred HHHHHHhhHHH-----HHcCCCceeccccccccc-ccccccceeeecccc-ccchhhhhhhhhhccccccceEEEeeecc
Confidence 45677788888 779999988755444321 222322 3554 5542 48999999999999987644331
Q ss_pred c-----------------------c---------c--------------------c---------CCCCcccccHHhHHH
Q 012852 180 V-----------------------F---------T--------------------C---------QVRPGSLFHEKDDAP 198 (455)
Q Consensus 180 ~-----------------------~---------~--------------------c---------~~~Pg~~~~~~~~~~ 198 (455)
- . . + ..+|.+++++...++
T Consensus 76 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~ 155 (316)
T PF00128_consen 76 HTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLK 155 (316)
T ss_dssp EEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhccccc
Confidence 0 0 0 0 123445666666777
Q ss_pred HHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeE
Q 012852 199 LFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFY 240 (455)
Q Consensus 199 ~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~ 240 (455)
.+.+.|||.+.+|....-. .+....+.++++...+++++
T Consensus 156 ~w~~~giDGfR~D~~~~~~---~~~~~~~~~~~~~~~~~~~~ 194 (316)
T PF00128_consen 156 FWIEEGIDGFRLDAAKHIP---KEFWKEFRDEVKEEKPDFFL 194 (316)
T ss_dssp HHHHTTESEEEETTGGGSS---HHHHHHHHHHHHHHHTTSEE
T ss_pred chhhceEeEEEEccccccc---hhhHHHHhhhhhhhccccce
Confidence 7888899999999975442 34555667777655444443
No 108
>PRK06852 aldolase; Validated
Probab=42.81 E-value=1.3e+02 Score=30.68 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcC-C
Q 012852 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETG-C 236 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G-~ 236 (455)
+..+++..|+.||-.-+|.-|--.. ...+..-+.+...++.-++.|-|.||.+++...... .-..++++...+| .
T Consensus 156 l~~v~~ea~~~GlPll~~~yprG~~-i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g---~~e~f~~vv~~~g~v 231 (304)
T PRK06852 156 AAQIIYEAHKHGLIAVLWIYPRGKA-VKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGAN---PAELFKEAVLAAGRT 231 (304)
T ss_pred HHHHHHHHHHhCCcEEEEeeccCcc-cCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCC---CHHHHHHHHHhCCCC
Confidence 7888899999999998887663211 112222245566667778999999999998532111 1234556666674 4
Q ss_pred CeeEe
Q 012852 237 SIFYS 241 (455)
Q Consensus 237 ~i~~~ 241 (455)
|+++.
T Consensus 232 pVvia 236 (304)
T PRK06852 232 KVVCA 236 (304)
T ss_pred cEEEe
Confidence 55554
No 109
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=42.72 E-value=41 Score=32.73 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=52.4
Q ss_pred CCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCc----cccCCCCccc-ccHHhHHHHHHhcCCcEEEeecCCCCC
Q 012852 143 LKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV----FTCQVRPGSL-FHEKDDAPLFASWGVDYLKYDNCFNLG 217 (455)
Q Consensus 143 ~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~----~~c~~~Pg~~-~~~~~~~~~~~~wGidylK~D~~~~~~ 217 (455)
.+|.+...+ -+..+..+++..|++|+|.-+-+.-+. ......|..+ .+++..++.++++|+|.|=+|+-+...
T Consensus 35 ~~G~l~~~~--~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~ 112 (253)
T cd06545 35 ANGTLNANP--VRSELNSVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV 112 (253)
T ss_pred CCCeEEecC--cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc
Confidence 345554432 123477889999999998765443211 1112344433 456788889999999999999976543
Q ss_pred CCccchhHHHHHHHH
Q 012852 218 IEPKKRYPPMRDALN 232 (455)
Q Consensus 218 ~~~~~~y~~m~~AL~ 232 (455)
. .+.|..+.+.|+
T Consensus 113 ~--~~~~~~fv~~Lr 125 (253)
T cd06545 113 T--FGDYLVFIRALY 125 (253)
T ss_pred c--HhHHHHHHHHHH
Confidence 2 345554444443
No 110
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=42.58 E-value=68 Score=33.35 Aligned_cols=97 Identities=26% Similarity=0.201 Sum_probs=61.8
Q ss_pred cccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCC-eEEEEecCCccccCCCCcccccHHhHHHHHH
Q 012852 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGL-KLGIYSDAGVFTCQVRPGSLFHEKDDAPLFA 201 (455)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~-k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~ 201 (455)
-+.|.+-++|.|+|.+. -+ ..+ .+.=.+| .++.+++.+++.+- .+=|++.-+.. .....++
T Consensus 199 i~aGAdavqifDsW~g~-l~-~~~--~~~f~~~-~~~~i~~~vk~~~~~~pii~f~~ga~-------------~~l~~m~ 260 (352)
T COG0407 199 IEAGADAVQIFDSWAGV-LS-MID--YDEFVLP-YMKRIVREVKEVKGGVPVIHFCKGAG-------------HLLEDMA 260 (352)
T ss_pred HHhCCCEEEeecccccc-CC-ccc--HHHHhhh-HHHHHHHHHHHhCCCCcEEEECCCcH-------------HHHHHHH
Confidence 46788999999999663 11 111 2222344 48999999998766 45666655431 2466788
Q ss_pred hcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEeeCCCCCCChhh
Q 012852 202 SWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPAL 252 (455)
Q Consensus 202 ~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~c~~g~~~p~~ 252 (455)
++|+|.+-+|+-.. +.+|-+..|..+ |--|..+|..
T Consensus 261 ~~g~d~l~vdw~v~-----------l~~a~~~~~~~~----~lqGNldP~l 296 (352)
T COG0407 261 KTGFDVLGVDWRVD-----------LKEAKKRLGDKV----ALQGNLDPAL 296 (352)
T ss_pred hcCCcEEeeccccC-----------HHHHHHHhCCCc----eEEeccChHh
Confidence 99999999888632 556655566552 2225566643
No 111
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=42.54 E-value=1.5e+02 Score=30.50 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=55.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccc
Q 012852 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~ 182 (455)
..++.+.+++.++.+ ++.|+..|.+- + |.... -|+ +..++++++++|+.+.|-+.. ..
T Consensus 44 ~~~~~e~~~~ii~~~-----~~~g~~~v~~~----G------GEPll----~~~-~~~il~~~~~~g~~~~i~TNG-~l- 101 (378)
T PRK05301 44 AELSTEEWIRVLREA-----RALGALQLHFS----G------GEPLL----RKD-LEELVAHARELGLYTNLITSG-VG- 101 (378)
T ss_pred CCCCHHHHHHHHHHH-----HHcCCcEEEEE----C------CccCC----chh-HHHHHHHHHHcCCcEEEECCC-cc-
Confidence 357888899999988 45666666653 2 23333 344 889999999999988764432 10
Q ss_pred cCCCCcccccHHhHHHHHHhcCCcEEEeecCCC
Q 012852 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFN 215 (455)
Q Consensus 183 c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~ 215 (455)
.-+..++.|++.|++.|.+..-..
T Consensus 102 ---------l~~~~~~~L~~~g~~~v~iSldg~ 125 (378)
T PRK05301 102 ---------LTEARLAALKDAGLDHIQLSFQDS 125 (378)
T ss_pred ---------CCHHHHHHHHHcCCCEEEEEecCC
Confidence 013457788899999887766543
No 112
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.62 E-value=1.1e+02 Score=31.74 Aligned_cols=105 Identities=12% Similarity=0.140 Sum_probs=63.8
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEecCCc-----------CCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-
Q 012852 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDCW-----------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW-----------~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~- 168 (455)
..+|.++|.+.++.+++ ...+++|++-|.|-.+= .+.+.|.+|-=.-|..+| +..+++.|++.
T Consensus 132 ~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf---~~eii~air~~v 208 (361)
T cd04747 132 REMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRF---AAEVVKAIRAAV 208 (361)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHc
Confidence 45888888888776654 22355899999887543 121334555434455677 56899999875
Q ss_pred C--CeEEEEecCCccccC-CCCcccccH--HhHHHHHHhcCCcEEEee
Q 012852 169 G--LKLGIYSDAGVFTCQ-VRPGSLFHE--KDDAPLFASWGVDYLKYD 211 (455)
Q Consensus 169 G--~k~Glw~~pg~~~c~-~~Pg~~~~~--~~~~~~~~~wGidylK~D 211 (455)
| +.+|+=+.+... +. ...+..... ...++.+.+.|+|||-+-
T Consensus 209 G~d~~v~vRis~~~~-~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs 255 (361)
T cd04747 209 GPDFPIILRFSQWKQ-QDYTARLADTPDELEALLAPLVDAGVDIFHCS 255 (361)
T ss_pred CCCCeEEEEECcccc-cccccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 4 677887765211 11 012122222 345666888999997653
No 113
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=41.40 E-value=1.2e+02 Score=29.56 Aligned_cols=76 Identities=9% Similarity=0.062 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCC--eEEEEecCCcccc---------------CCCCc--ccccH-------HhHHHHHHhcCCcE-EEe
Q 012852 158 IKALADYVHGKGL--KLGIYSDAGVFTC---------------QVRPG--SLFHE-------KDDAPLFASWGVDY-LKY 210 (455)
Q Consensus 158 l~~l~~~v~~~G~--k~Glw~~pg~~~c---------------~~~Pg--~~~~~-------~~~~~~~~~wGidy-lK~ 210 (455)
+..++++||+.|+ |+||=+.|++..+ ..+|| -+.|+ ++..+.+.+.|.++ |-+
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 7889999999999 9999999986311 23555 23333 34444555667765 677
Q ss_pred ecCCCCCCCccchhHHHHHHHHhcCCCeeEee
Q 012852 211 DNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (455)
Q Consensus 211 D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~ 242 (455)
|.--.. ..+. .+.++|-++++..
T Consensus 185 DGGI~~--------~ti~-~l~~aGaD~~V~G 207 (228)
T PRK08091 185 DGSMTL--------ELAS-YLKQHQIDWVVSG 207 (228)
T ss_pred ECCCCH--------HHHH-HHHHCCCCEEEEC
Confidence 764221 1122 2345798988864
No 114
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=41.20 E-value=74 Score=29.71 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccc----hhHHHHHHHHh
Q 012852 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKK----RYPPMRDALNE 233 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~----~y~~m~~AL~~ 233 (455)
+...++.+++.|+++.| +- ++.-...+..+....+||||+|........... ....+....+.
T Consensus 135 ~~~~i~~l~~~G~~ial--dd-----------fg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~ 201 (241)
T smart00052 135 AVATLQRLRELGVRIAL--DD-----------FGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQK 201 (241)
T ss_pred HHHHHHHHHHCCCEEEE--eC-----------CCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHH
Confidence 55888999999998865 21 111122366788899999999986543322112 22333343345
Q ss_pred cCCCeeEee
Q 012852 234 TGCSIFYSL 242 (455)
Q Consensus 234 ~G~~i~~~~ 242 (455)
.|-+++...
T Consensus 202 ~~~~via~g 210 (241)
T smart00052 202 LGLQVVAEG 210 (241)
T ss_pred CCCeEEEec
Confidence 666676663
No 115
>PRK12677 xylose isomerase; Provisional
Probab=40.97 E-value=20 Score=37.57 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcC--CeEEE
Q 012852 108 TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKG--LKLGI 174 (455)
Q Consensus 108 ~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G--~k~Gl 174 (455)
+.+++.++.+ +++|.+++++=.|+.+...+..-++.-.-++|-++|+.++++.+++| ++++|
T Consensus 114 ~~~~r~IdlA-----~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laI 177 (384)
T PRK12677 114 RKVLRNIDLA-----AELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFAL 177 (384)
T ss_pred HHHHHHHHHH-----HHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4466667777 56899999997666432111111222223455678999999998866 88776
No 116
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=40.65 E-value=63 Score=32.86 Aligned_cols=127 Identities=17% Similarity=0.300 Sum_probs=72.8
Q ss_pred ccccHHhHHHHHHhcCCc-EEEeecCCCCCCCc------cchhHHHHHHHHhcCCCeeEeeCCCCCCCh---hhhhh---
Q 012852 189 SLFHEKDDAPLFASWGVD-YLKYDNCFNLGIEP------KKRYPPMRDALNETGCSIFYSLCEWGVDDP---ALWAG--- 255 (455)
Q Consensus 189 ~~~~~~~~~~~~~~wGid-ylK~D~~~~~~~~~------~~~y~~m~~AL~~~G~~i~~~~c~~g~~~p---~~w~~--- 255 (455)
.++|=...-.+|.+|..+ .+|+=.-+++.-++ .+....+.+|..++|+.+++++=. |...| .....
T Consensus 123 ~fE~G~digs~L~~WP~ehvVKcLvfyHPdD~~~lr~~Qe~~l~~l~~ac~~sg~ElLLEvI~-p~~~~~~~~~~~~ai~ 201 (311)
T PF09863_consen 123 RFEHGRDIGSQLIEWPQEHVVKCLVFYHPDDDPELRLEQEAQLRRLYDACRRSGHELLLEVIP-PKDMPVDDDTYARAIE 201 (311)
T ss_pred eeecCcCHHHHHHhCCcccEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhcCcceeEEEec-CCCCCCChHHHHHHHH
Confidence 344445667789999987 99998878775432 344556778888999999998632 22222 11111
Q ss_pred -----h-ccCeeeecCCCCCChhHHHHHHHhhcccccccCCCCcCCCCc---cccCCCCCCHHHHHHHHHHHHHHhCcee
Q 012852 256 -----K-VGNSWRTTGDINDTWASMTSIADINDKWASYAGPGGWNDPDM---LEVGNGGMSYQEYRAHFSIWALMKAPLL 326 (455)
Q Consensus 256 -----~-~~~~~Ris~Di~~~W~~~~~~~~~~~~~~~~~g~g~~nDpDm---L~vg~~~lT~~E~rt~~slwa~~gsPL~ 326 (455)
+ +.+-|-+..=....|..+...+.. +||.+ +++| ++..+....-++-+..++|+.
T Consensus 202 r~Y~lGI~PDWWKLep~s~~~W~~i~~~I~~-------------~Dp~crGvVvLG---LdAP~e~L~~~F~~Aa~~p~v 265 (311)
T PF09863_consen 202 RFYNLGIKPDWWKLEPLSAAAWQAIEALIEE-------------RDPYCRGVVVLG---LDAPEEELAAGFAAAAGSPLV 265 (311)
T ss_pred HHHHcCCCCCeeccCCCCHHHHHHHHHHHHH-------------hCCCceeEEEec---CCCCHHHHHHHHHHhhCCCce
Confidence 1 133443333222345555544432 46655 3343 443344444456567778888
Q ss_pred ecCCCC
Q 012852 327 IGCDVR 332 (455)
Q Consensus 327 is~Dl~ 332 (455)
-|-=+-
T Consensus 266 kGFAVG 271 (311)
T PF09863_consen 266 KGFAVG 271 (311)
T ss_pred eeeeec
Confidence 775553
No 117
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=40.62 E-value=1.1e+02 Score=31.75 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=63.3
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEecCC--c---------CCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-
Q 012852 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDC--W---------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDG--W---------~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~- 168 (455)
..+|+++|.+.++.+++ ...+++|++-|.|-.+ | .+.+.|.+|-=.-|..|| +..+++.|++.
T Consensus 147 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf---~~Eiv~aVr~~v 223 (362)
T PRK10605 147 RALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARL---VLEVVDAGIAEW 223 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHH---HHHHHHHHHHHc
Confidence 46888888888776654 2345689999998754 2 121234555444466677 45788888763
Q ss_pred CC-eEEEEecCCccccCCCCccccc---HHhHHHHHHhcCCcEEEeec
Q 012852 169 GL-KLGIYSDAGVFTCQVRPGSLFH---EKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 169 G~-k~Glw~~pg~~~c~~~Pg~~~~---~~~~~~~~~~wGidylK~D~ 212 (455)
|= .+|+=+.|....+ ..++...- ....++.|.+.|||||-+-.
T Consensus 224 g~~~igvRis~~~~~~-~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~ 270 (362)
T PRK10605 224 GADRIGIRISPLGTFN-NVDNGPNEEADALYLIEQLGKRGIAYLHMSE 270 (362)
T ss_pred CCCeEEEEECCccccc-cCCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Confidence 21 2677666632111 11221222 13456788899999998753
No 118
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=40.47 E-value=65 Score=29.54 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeec
Q 012852 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~ 212 (455)
.+.+++.+|+.|+++-+|.... ....++.+.++|||+|=.|+
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~-------------~~~~~~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVND-------------NNEIINKFLNLGVDGLITDF 179 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCC-------------hHHHHHHHHHcCCCEEeCCC
Confidence 4789999999999999998763 13467888899999997774
No 119
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=40.27 E-value=59 Score=31.67 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCeEEEEecCCcccc---------------CCCCc--ccccH-------HhHHHHHHhcCCcE-EEeec
Q 012852 158 IKALADYVHGKGLKLGIYSDAGVFTC---------------QVRPG--SLFHE-------KDDAPLFASWGVDY-LKYDN 212 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~~~c---------------~~~Pg--~~~~~-------~~~~~~~~~wGidy-lK~D~ 212 (455)
+..++++||+.|+|+||=+.|++... ..+|| -+.|+ ++.-+.+.+.|.++ |-+|.
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDG 176 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDG 176 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 77899999999999999999986210 23455 23343 34444555677765 66776
Q ss_pred CCCCCCCccchhHHHHHHHHhcCCCeeEee
Q 012852 213 CFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (455)
Q Consensus 213 ~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~ 242 (455)
.-.. ..+. .+.++|-++++..
T Consensus 177 GI~~--------~~i~-~~~~aGad~~V~G 197 (229)
T PRK09722 177 SCNQ--------KTYE-KLMEAGADVFIVG 197 (229)
T ss_pred CCCH--------HHHH-HHHHcCCCEEEEC
Confidence 4221 1222 2345788888864
No 120
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=40.10 E-value=51 Score=32.29 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
+.+++.+|++|+++.+|+ ++.. + --...++.+.++|||.|=.|+-
T Consensus 213 ~~~v~~~~~~Gl~v~~wT-~~~~-~--------n~~~~~~~l~~~GvdgiiTD~p 257 (265)
T cd08564 213 EEFVKKAHENGLKVMTYF-DEPV-N--------DNEEDYKVYLELGVDCICPNDP 257 (265)
T ss_pred HHHHHHHHHcCCEEEEec-CCCC-C--------CCHHHHHHHHHcCCCEEEcCCH
Confidence 578999999999999997 3210 0 0134677788999999988864
No 121
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=39.81 E-value=2.3e+02 Score=27.96 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcc-cCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccC
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-PDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~-~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~ 184 (455)
+++.+++.|+.+ +++|+.++- -.-| + .|.+-...+ +.. .||+.|.++.++.|+.+-- ++
T Consensus 27 s~e~~~~~a~~~-----~~~g~~~~r-~g~~-k-pRts~~sf~G~G~----~gl~~L~~~~~~~Gl~~~T--ev------ 86 (250)
T PRK13397 27 SYDHIRLAASSA-----KKLGYNYFR-GGAY-K-PRTSAASFQGLGL----QGIRYLHEVCQEFGLLSVS--EI------ 86 (250)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEE-eccc-C-CCCCCcccCCCCH----HHHHHHHHHHHHcCCCEEE--ee------
Confidence 789999999997 667776443 2223 3 343322211 111 2799999999999998742 21
Q ss_pred CCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEee
Q 012852 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (455)
Q Consensus 185 ~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~ 242 (455)
|-...++.+.+ .+|++|+=-...- -..+.+++.++|.|++++.
T Consensus 87 -------~d~~~v~~~~e-~vdilqIgs~~~~-------n~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 87 -------MSERQLEEAYD-YLDVIQVGARNMQ-------NFEFLKTLSHIDKPILFKR 129 (250)
T ss_pred -------CCHHHHHHHHh-cCCEEEECccccc-------CHHHHHHHHccCCeEEEeC
Confidence 23345677777 5999998543211 1357777778899998874
No 122
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=38.45 E-value=64 Score=33.21 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCeEEEEecCC
Q 012852 158 IKALADYVHGKGLKLGIYSDAG 179 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg 179 (455)
.++|++.+++.+++||||+.+.
T Consensus 152 V~EL~~A~rk~dirfGLY~Slf 173 (454)
T KOG3340|consen 152 VGELASAIRKRDIRFGLYYSLF 173 (454)
T ss_pred HHHHHHHHHhcCcceeEeecHH
Confidence 6899999999999999999874
No 123
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=38.06 E-value=2.9e+02 Score=27.83 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=52.0
Q ss_pred CHHHHHHHHHhcCCeEEEEecC--CccccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCC--ccchhHHHHHHHH
Q 012852 157 GIKALADYVHGKGLKLGIYSDA--GVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIE--PKKRYPPMRDALN 232 (455)
Q Consensus 157 Gl~~l~~~v~~~G~k~Glw~~p--g~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~--~~~~y~~m~~AL~ 232 (455)
.+..-+..++++|.|+-|-+-- +.....+.-.+..+.+...+.+..||+|.|-+|.-+....+ ..++..+..++|+
T Consensus 55 ~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq 134 (294)
T cd06543 55 WIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQ 134 (294)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHH
Confidence 4677788999999988775532 11100111223445556667789999999999987654222 1234444444555
Q ss_pred hcCCCeeEeeC
Q 012852 233 ETGCSIFYSLC 243 (455)
Q Consensus 233 ~~G~~i~~~~c 243 (455)
+..+++.+++.
T Consensus 135 ~~~p~l~vs~T 145 (294)
T cd06543 135 KEYPDLKISFT 145 (294)
T ss_pred HHCCCcEEEEe
Confidence 55566666654
No 124
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=37.73 E-value=3.5e+02 Score=27.75 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=64.4
Q ss_pred cccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEE-------EecCCccccCCCCc-------
Q 012852 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI-------YSDAGVFTCQVRPG------- 188 (455)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Gl-------w~~pg~~~c~~~Pg------- 188 (455)
+++|+.|+-|- =|-. .+|.+|.-.--..-=-.+.-+++++.+++|||+=+ |.+|+. ...|.
T Consensus 73 K~~GvNyvRlR-vwnd-P~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak---Q~kPkaW~~l~f 147 (403)
T COG3867 73 KNHGVNYVRLR-VWND-PYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK---QKKPKAWENLNF 147 (403)
T ss_pred HHcCcCeEEEE-EecC-CccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhh---cCCcHHhhhcCH
Confidence 67899988875 4655 35554331110000000367788999999999875 445553 22333
Q ss_pred ------ccccHHhHHHHHHhcCCc--EEEeecCCCCCC---Cccc-hhHHHHH-------HHHhcCCCeeEeeC
Q 012852 189 ------SLFHEKDDAPLFASWGVD--YLKYDNCFNLGI---EPKK-RYPPMRD-------ALNETGCSIFYSLC 243 (455)
Q Consensus 189 ------~~~~~~~~~~~~~~wGid--ylK~D~~~~~~~---~~~~-~y~~m~~-------AL~~~G~~i~~~~c 243 (455)
++.|-+..+++++.-||+ +|.+-.-..++. ++.. .+.+|.+ |+++..+++.+.++
T Consensus 148 e~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lH 221 (403)
T COG3867 148 EQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALH 221 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEE
Confidence 345556777889988874 566555433332 1221 4555554 44445555555443
No 125
>PLN03244 alpha-amylase; Provisional
Probab=37.66 E-value=76 Score=36.54 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHhcCCeEEEEecCC---------------cc---------------cc----CCCCcccccHHhHHHH-
Q 012852 155 PSGIKALADYVHGKGLKLGIYSDAG---------------VF---------------TC----QVRPGSLFHEKDDAPL- 199 (455)
Q Consensus 155 P~Gl~~l~~~v~~~G~k~Glw~~pg---------------~~---------------~c----~~~Pg~~~~~~~~~~~- 199 (455)
|+.||.|||.+|++||.+=|=+-+. .. .| .++|+++.|+-..+..
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHH
Confidence 5579999999999999875433220 00 01 2356677777666655
Q ss_pred HHhcCCcEEEeecC
Q 012852 200 FASWGVDYLKYDNC 213 (455)
Q Consensus 200 ~~~wGidylK~D~~ 213 (455)
+.+++||.+.+|..
T Consensus 520 leEyhIDGFRfDaV 533 (872)
T PLN03244 520 ITEYQIDGFQFHSL 533 (872)
T ss_pred HHHhCcCcceeecc
Confidence 46999999999965
No 126
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=37.54 E-value=1.1e+02 Score=28.32 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCeEEEE-ecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHH----HHHH
Q 012852 158 IKALADYVHGKGLKLGIY-SDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMR----DALN 232 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw-~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~----~AL~ 232 (455)
+...++.+++.|++++|= +..+ ...++.+..+.+||||+|.-...... ......+. +..+
T Consensus 136 ~~~~l~~l~~~G~~i~ld~~g~~--------------~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~ 200 (236)
T PF00563_consen 136 LLENLRRLRSLGFRIALDDFGSG--------------SSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAK 200 (236)
T ss_dssp HHHHHHHHHHCT-EEEEEEETST--------------CGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceeEeeeccCC--------------cchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhh
Confidence 346777799999999873 1111 12366789999999999997654433 33344333 3345
Q ss_pred hcCCCeeEee
Q 012852 233 ETGCSIFYSL 242 (455)
Q Consensus 233 ~~G~~i~~~~ 242 (455)
..|-.++...
T Consensus 201 ~~~~~via~g 210 (236)
T PF00563_consen 201 SLGIKVIAEG 210 (236)
T ss_dssp HTT-EEEEEC
T ss_pred ccccccceee
Confidence 5677777663
No 127
>PLN02389 biotin synthase
Probab=37.43 E-value=2e+02 Score=30.14 Aligned_cols=83 Identities=19% Similarity=0.307 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCcccc
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c 183 (455)
.++.+.|.+.|+.+ ++.|+..|.|=.+|-. ..+. +..|+. +..+++.+++.|+.+ ....|.
T Consensus 115 ~Ls~EeIl~~a~~~-----~~~G~~~~~ivts~rg----~~~e----~~~~e~-i~eiir~ik~~~l~i--~~s~G~--- 175 (379)
T PLN02389 115 LMSKDDVLEAAKRA-----KEAGSTRFCMGAAWRD----TVGR----KTNFNQ-ILEYVKEIRGMGMEV--CCTLGM--- 175 (379)
T ss_pred cCCHHHHHHHHHHH-----HHcCCCEEEEEecccC----CCCC----hhHHHH-HHHHHHHHhcCCcEE--EECCCC---
Confidence 37899999999988 4567888877544522 1111 112333 777888888766553 222221
Q ss_pred CCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 184 ~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
-.++.++.|++.|+|.+-.+.-
T Consensus 176 --------l~~E~l~~LkeAGld~~~~~Le 197 (379)
T PLN02389 176 --------LEKEQAAQLKEAGLTAYNHNLD 197 (379)
T ss_pred --------CCHHHHHHHHHcCCCEEEeeec
Confidence 1246788899999998877654
No 128
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=37.40 E-value=4.7e+02 Score=26.81 Aligned_cols=120 Identities=15% Similarity=0.100 Sum_probs=67.4
Q ss_pred CcCCCHHHHHHHHHHHHHcCCcccCceEEEe--cCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHh--cCCeEEEEec
Q 012852 102 ACNISETIIKETADALVSTGLAELGYDHVNI--DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG--KGLKLGIYSD 177 (455)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~i--DDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~--~G~k~Glw~~ 177 (455)
...++.+.+++.++.+ .++|+++|-+ .+|+.+. ....+...+|+ .. .++.+++ ++.++..++.
T Consensus 19 ~~~f~~~~~~~i~~~L-----~~aGv~~IEvg~~~g~g~~------s~~~g~~~~~~-~e-~i~~~~~~~~~~~~~~ll~ 85 (337)
T PRK08195 19 RHQYTLEQVRAIARAL-----DAAGVPVIEVTHGDGLGGS------SFNYGFGAHTD-EE-YIEAAAEVVKQAKIAALLL 85 (337)
T ss_pred CCccCHHHHHHHHHHH-----HHcCCCEEEeecCCCCCCc------cccCCCCCCCH-HH-HHHHHHHhCCCCEEEEEec
Confidence 4468999999999999 5678888877 3455432 12223344443 22 3344422 4678887777
Q ss_pred CCccccCCCCcccccHHhHHHHHHhcCCcEEEeec-CCCCCCCccchhHHHHHHHHhcCCCeeEeeCCCCCCCh
Q 012852 178 AGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN-CFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDP 250 (455)
Q Consensus 178 pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~-~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~c~~g~~~p 250 (455)
|+..+ . .+++...+.|+|.|.+=. |.. .+.-....+..++.|-.+.+.++..+..+|
T Consensus 86 pg~~~----------~-~dl~~a~~~gvd~iri~~~~~e-----~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~ 143 (337)
T PRK08195 86 PGIGT----------V-DDLKMAYDAGVRVVRVATHCTE-----ADVSEQHIGLARELGMDTVGFLMMSHMAPP 143 (337)
T ss_pred cCccc----------H-HHHHHHHHcCCCEEEEEEecch-----HHHHHHHHHHHHHCCCeEEEEEEeccCCCH
Confidence 75411 1 346667788888877532 221 111223333344566666666655444444
No 129
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=37.39 E-value=97 Score=31.82 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=60.2
Q ss_pred cCCCHHHHHHHHHHHHHc--CCcccCceEEEecC--CcC---------CCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-
Q 012852 103 CNISETIIKETADALVST--GLAELGYDHVNIDD--CWS---------SPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~--gl~~~G~~~~~iDD--GW~---------~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~- 168 (455)
..+|.++|.+..+.+++. ..+++|++-|.|-. ||. ..+.|.+|-=..+..+| +..+++.|++.
T Consensus 129 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~~ir~~v 205 (343)
T cd04734 129 KAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRF---LLEVLAAVRAAV 205 (343)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHH---HHHHHHHHHHHc
Confidence 468888888887766542 23568999999988 662 11235554323344455 56788888865
Q ss_pred CC--eEEEEecCCccccCCCCccc--ccHHhHHHHHHhcC-CcEEEee
Q 012852 169 GL--KLGIYSDAGVFTCQVRPGSL--FHEKDDAPLFASWG-VDYLKYD 211 (455)
Q Consensus 169 G~--k~Glw~~pg~~~c~~~Pg~~--~~~~~~~~~~~~wG-idylK~D 211 (455)
|. .+|+=+.+... .++-. +-....++.|.+.| +|||-+-
T Consensus 206 g~~~~v~iRl~~~~~----~~~G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 206 GPDFIVGIRISGDED----TEGGLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred CCCCeEEEEeehhhc----cCCCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 54 34554443211 11111 11235577788887 8888774
No 130
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=36.62 E-value=62 Score=31.77 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
+.+++.+|+.|+++.+|+--. ...++.+.+||||.|=.|+-
T Consensus 221 ~~~v~~~~~~G~~v~vWTVNd--------------~~~~~~l~~~GVdgIiTD~P 261 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWVLND--------------EEDFEEAFDLGADGVMTDSP 261 (264)
T ss_pred HHHHHHHHhcCCcEEEEEECC--------------HHHHHHHHhcCCCEEEeCCc
Confidence 579999999999999998542 23578899999999988874
No 131
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=36.03 E-value=55 Score=32.34 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeec
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~ 212 (455)
+.+++.+|+.|+++..|+..-.. ...++.+.++|||.|=.|+
T Consensus 240 ~~~v~~~~~~Gl~v~vWTv~~n~------------~~~~~~l~~~GVdgIiTD~ 281 (282)
T cd08605 240 PTAVSLVKASGLELGTYGKLNND------------AEAVERQADLGVDGVIVDH 281 (282)
T ss_pred cHHHHHHHHcCcEEEEeCCCCCC------------HHHHHHHHHcCCCEEEeCC
Confidence 46899999999999999852100 2357788999999998886
No 132
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=36.02 E-value=1.1e+02 Score=29.92 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=28.9
Q ss_pred CHHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 157 GIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 157 Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
-.+.|.++++++|+.|.- .| |-...++.+.+.|++++|+=-.
T Consensus 57 ~~~~L~~~~~~~gi~f~s--tp-------------fd~~s~d~l~~~~~~~~KIaS~ 98 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFFS--TP-------------FDEESVDFLEELGVPAYKIASG 98 (241)
T ss_dssp HHHHHHHHHHHTT-EEEE--EE--------------SHHHHHHHHHHT-SEEEE-GG
T ss_pred HHHHHHHHHHHcCCEEEE--CC-------------CCHHHHHHHHHcCCCEEEeccc
Confidence 378999999999999852 22 2234567778899999999654
No 133
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=35.94 E-value=1.3e+02 Score=30.98 Aligned_cols=102 Identities=20% Similarity=0.154 Sum_probs=59.8
Q ss_pred cCCCHHHHHHHHHHHHHc--CCcccCceEEEecCC-----------cCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-
Q 012852 103 CNISETIIKETADALVST--GLAELGYDHVNIDDC-----------WSSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~--gl~~~G~~~~~iDDG-----------W~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~- 168 (455)
..+|+++|.+.++.+++. ..++.|++-|.|=.+ -...+.|.+|-=.-|..+| +..+++.|++.
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~aIR~~v 201 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRF---PVEIVRAVRAAV 201 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHH---HHHHHHHHHHHc
Confidence 468899888887776542 235689999998432 1122334454323344455 46788888764
Q ss_pred C--CeEEEEecCCccccCCCCccc--ccHHhHHHHHHhcCCcEEEee
Q 012852 169 G--LKLGIYSDAGVFTCQVRPGSL--FHEKDDAPLFASWGVDYLKYD 211 (455)
Q Consensus 169 G--~k~Glw~~pg~~~c~~~Pg~~--~~~~~~~~~~~~wGidylK~D 211 (455)
| +.+|+=+.+... .++.. +-....++.|.+.|+|||-+-
T Consensus 202 G~d~~v~iRi~~~D~----~~~g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 202 GEDFIIIYRLSMLDL----VEGGSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCCceEEEEeccccc----CCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 4 445554443211 11211 122356788899999999874
No 134
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=35.65 E-value=22 Score=36.85 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEec-CCcCCCCCCCCCCcccCCCCCC-CCHHHHHHHHHhcCCeEEEEec
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNID-DCWSSPLRDLKGQLVPDTITFP-SGIKALADYVHGKGLKLGIYSD 177 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iD-DGW~~~~rd~~G~~~~d~~~FP-~Gl~~l~~~v~~~G~k~Glw~~ 177 (455)
-+++.+.+.++.| +++|++.+.|- =.|.. +.|.+.+|= +.|..+++.+++.|+++-|-+.
T Consensus 7 ~~~e~~~~d~~~m-----~~~G~n~vri~~~~W~~--------lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 7 WPEEEWEEDLRLM-----KEAGFNTVRIGEFSWSW--------LEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp S-CCHHHHHHHHH-----HHHT-SEEEE-CCEHHH--------H-SBTTB---HHHHHHHHHHHCTT-EEEEEEC
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEEEechhh--------ccCCCCeeecHHHHHHHHHHHhccCeEEEEec
Confidence 4567888889988 67899999984 46743 334443332 2399999999999999988764
No 135
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=35.34 E-value=5.1e+02 Score=26.56 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=50.8
Q ss_pred CcCCCHHHHHHHHHHHHHcCCcccCceEEEec--CCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHh-cCCeEEEEecC
Q 012852 102 ACNISETIIKETADALVSTGLAELGYDHVNID--DCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSDA 178 (455)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iD--DGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~-~G~k~Glw~~p 178 (455)
...++.+.+++.++.+ .++|+++|-+- +|+.+. ........+|+ ++.+..-+.. +..++..+..|
T Consensus 18 ~~~f~~~~~~~ia~~L-----d~aGV~~IEvg~g~gl~g~------s~~~G~~~~~~-~e~i~~~~~~~~~~~~~~ll~p 85 (333)
T TIGR03217 18 RHQFTIEQVRAIAAAL-----DEAGVDAIEVTHGDGLGGS------SFNYGFSAHTD-LEYIEAAADVVKRAKVAVLLLP 85 (333)
T ss_pred CCcCCHHHHHHHHHHH-----HHcCCCEEEEecCCCCCCc------cccCCCCCCCh-HHHHHHHHHhCCCCEEEEEecc
Confidence 4568999999999999 56788888773 343221 12222344554 4433222222 35788888888
Q ss_pred CccccCCCCcccccHHhHHHHHHhcCCcEEEe
Q 012852 179 GVFTCQVRPGSLFHEKDDAPLFASWGVDYLKY 210 (455)
Q Consensus 179 g~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~ 210 (455)
|..+ ..+++...+.|+|.|.+
T Consensus 86 g~~~-----------~~dl~~a~~~gvd~iri 106 (333)
T TIGR03217 86 GIGT-----------VHDLKAAYDAGARTVRV 106 (333)
T ss_pred CccC-----------HHHHHHHHHCCCCEEEE
Confidence 6421 12445555667777665
No 136
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=35.31 E-value=84 Score=30.41 Aligned_cols=88 Identities=10% Similarity=0.090 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHhcCCeEEEEecCCc--cc--cCCCC-cccccHHhHHHHHHhcCCcEEEeecCCCCCC------Cccchh
Q 012852 156 SGIKALADYVHGKGLKLGIYSDAGV--FT--CQVRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGI------EPKKRY 224 (455)
Q Consensus 156 ~Gl~~l~~~v~~~G~k~Glw~~pg~--~~--c~~~P-g~~~~~~~~~~~~~~wGidylK~D~~~~~~~------~~~~~y 224 (455)
.-.+..+..+|++|.|+=+-+.-.. .. ....+ +...|.+...+.+.++|+|.|=+|+-+.... ...+.|
T Consensus 51 ~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~ 130 (255)
T cd06542 51 TNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAF 130 (255)
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHH
Confidence 3467888889999999755443211 01 11122 2456677888899999999999999765431 124566
Q ss_pred HHHHHHHHhc-CC-CeeEeeC
Q 012852 225 PPMRDALNET-GC-SIFYSLC 243 (455)
Q Consensus 225 ~~m~~AL~~~-G~-~i~~~~c 243 (455)
..+.++|++. |+ +.++++.
T Consensus 131 ~~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 131 VRLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred HHHHHHHHHHhCcCCcEEEEE
Confidence 6677777643 33 4455543
No 137
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=35.26 E-value=69 Score=33.75 Aligned_cols=59 Identities=24% Similarity=0.219 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCcccCceEEEec----CCcCCCCCCCCCCcccCCCCCCCC--HHHHHHHHHhcCCeEEEEec
Q 012852 112 ETADALVSTGLAELGYDHVNID----DCWSSPLRDLKGQLVPDTITFPSG--IKALADYVHGKGLKLGIYSD 177 (455)
Q Consensus 112 ~~ad~~~~~gl~~~G~~~~~iD----DGW~~~~rd~~G~~~~d~~~FP~G--l~~l~~~v~~~G~k~Glw~~ 177 (455)
+-|+.+ ++.|.+|+++= ||..--. ..+-+|. .+.+=|-+ ++.+++.+++.||.||||..
T Consensus 58 eWar~f-----K~aGAKyvilvakHHDGFaLw~-t~ys~wn-svk~GpKrDlvgela~Avr~qGL~FGvy~s 122 (430)
T COG3669 58 EWARLF-----KEAGAKYVILVAKHHDGFALWP-TDYSVWN-SVKRGPKRDLVGELAKAVREQGLRFGVYLS 122 (430)
T ss_pred HHHHHH-----HHcCCcEEEEeeeecCCeeecc-ccccccc-ccccCCcccHHHHHHHHHHHcCCeeeEeec
Confidence 446666 56788888872 3321100 0112222 11222322 78899999999999999997
No 138
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.98 E-value=1.7e+02 Score=30.37 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCC-CCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCcccc
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDL-KGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~-~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c 183 (455)
.+++.+++.|+.+ ++.|.+++- .|=++ .|.+ ++..-+. -.|++-|.+..++.|+.+- +++
T Consensus 112 Es~eq~l~~A~~l-----k~~g~~~~r--~g~~k-pRtsp~sf~G~g----~~gl~~L~~~~~e~Gl~~~--tev----- 172 (352)
T PRK13396 112 ENEEMIVETAKRV-----KAAGAKFLR--GGAYK-PRTSPYAFQGHG----ESALELLAAAREATGLGII--TEV----- 172 (352)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEE--eeeec-CCCCCcccCCch----HHHHHHHHHHHHHcCCcEE--Eee-----
Confidence 5899999999999 455666533 45444 3432 2221111 1379999999999998874 222
Q ss_pred CCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEe
Q 012852 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (455)
Q Consensus 184 ~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~ 241 (455)
+-...++.+.++ +|++|+=-...- . ..+.+++.++|.|++++
T Consensus 173 --------~d~~~v~~~~~~-~d~lqIga~~~~------n-~~LL~~va~t~kPVllk 214 (352)
T PRK13396 173 --------MDAADLEKIAEV-ADVIQVGARNMQ------N-FSLLKKVGAQDKPVLLK 214 (352)
T ss_pred --------CCHHHHHHHHhh-CCeEEECccccc------C-HHHHHHHHccCCeEEEe
Confidence 223456677777 899998543211 1 22444445556666665
No 139
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=34.75 E-value=84 Score=31.11 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=34.4
Q ss_pred HHHHHHHHhc-CCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 159 KALADYVHGK-GLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 159 ~~l~~~v~~~-G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
+.+++.+|++ |+++-.|+-... .+++.+.+||||.|=-|+-
T Consensus 219 ~~~V~~~h~~~gl~V~~WTVN~~--------------~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGINTA--------------DDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEeCCH--------------HHHHHHHHcCCCEEEeCCc
Confidence 6789999999 999999986431 3678899999999988874
No 140
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=34.41 E-value=1.5e+02 Score=30.50 Aligned_cols=104 Identities=20% Similarity=0.151 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccC
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~ 184 (455)
-+++.+++.|..+++ .|.+. +-.|=|+ .|.+-..++--. ..||+-|.++.++.|+.+-- ++
T Consensus 104 Es~e~~~~~A~~lk~-----~ga~~--~r~~~fK-pRTsp~sf~G~g---~~gL~~L~~~~~~~Gl~v~t--ev------ 164 (335)
T PRK08673 104 ESEEQILEIARAVKE-----AGAQI--LRGGAFK-PRTSPYSFQGLG---EEGLKLLAEAREETGLPIVT--EV------ 164 (335)
T ss_pred CCHHHHHHHHHHHHH-----hchhh--ccCcEec-CCCCCccccccc---HHHHHHHHHHHHHcCCcEEE--ee------
Confidence 389999999999944 55442 2223334 344322222111 34899999999999998853 11
Q ss_pred CCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEee
Q 012852 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (455)
Q Consensus 185 ~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~~ 242 (455)
+-...++.+.+. +|++|+=--... . ..+.+++.++|.|++++.
T Consensus 165 -------~d~~~~~~l~~~-vd~lqIgAr~~~------N-~~LL~~va~~~kPViLk~ 207 (335)
T PRK08673 165 -------MDPRDVELVAEY-VDILQIGARNMQ------N-FDLLKEVGKTNKPVLLKR 207 (335)
T ss_pred -------CCHHHHHHHHHh-CCeEEECccccc------C-HHHHHHHHcCCCcEEEeC
Confidence 223356677777 899998543211 1 234555556677777763
No 141
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=34.19 E-value=1.2e+02 Score=33.27 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCC-----cccCCCCCC--CCHHHHHHHHHhcCCeEEE
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQ-----LVPDTITFP--SGIKALADYVHGKGLKLGI 174 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~-----~~~d~~~FP--~Gl~~l~~~v~~~G~k~Gl 174 (455)
+-+.|.+.++.+ +++|++.|.|=--+..... ..|. ..+|+ .|- ..++.|++.+|++||++-|
T Consensus 31 dl~gi~~~ldyl-----~~lGv~~i~l~P~~~~~~~-~~gY~~~d~~~id~-~~Gt~~d~~~lv~~~h~~gi~vil 99 (551)
T PRK10933 31 DLRGVTQRLDYL-----QKLGVDAIWLTPFYVSPQV-DNGYDVANYTAIDP-TYGTLDDFDELVAQAKSRGIRIIL 99 (551)
T ss_pred CHHHHHHhhHHH-----HhCCCCEEEECCCCCCCCC-CCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 567778888888 7899999987443322111 1122 23443 343 2599999999999999754
No 142
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=33.92 E-value=1.2e+02 Score=30.58 Aligned_cols=101 Identities=17% Similarity=0.057 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHH--cCCcccCceEEEecCC-cCCCCCCCCCCcccCCCCCCCCHHHHHHHHHh--cCCeEEEEecCCcc
Q 012852 107 ETIIKETADALVS--TGLAELGYDHVNIDDC-WSSPLRDLKGQLVPDTITFPSGIKALADYVHG--KGLKLGIYSDAGVF 181 (455)
Q Consensus 107 e~~i~~~ad~~~~--~gl~~~G~~~~~iDDG-W~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~--~G~k~Glw~~pg~~ 181 (455)
++.+.+.|+.+.+ .-|.++|+.+++|||- |.. ..+.. .+ +..=.-++.+.+.+++ .+++.+++++.|..
T Consensus 147 ~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~-~~~~~----~~-~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~ 220 (332)
T cd03311 147 EELAMDLALALREEIRDLYDAGCRYIQIDEPALAE-GLPLE----PD-DLAADYLKWANEALADRPDDTQIHTHICYGNF 220 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhc-cCCcc----cH-HHHHHHHHHHHHHHHhCCCCCEEEEEEECCCC
Confidence 3455555554433 1356789999999995 432 11110 00 0000135667777765 36788887776642
Q ss_pred ccCCCCcccccHHhHHHHHHhcCCcEEEeecCCC
Q 012852 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFN 215 (455)
Q Consensus 182 ~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~ 215 (455)
.-. .-...-+...+..+.+.++|.+-+|+...
T Consensus 221 ~~~--~~~~~~y~~i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 221 RST--WAAEGGYEPIAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred ccc--ccccCcHHHHHHHHHhCCCCEEEEEEcCC
Confidence 111 11222335567778888899999999753
No 143
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=33.67 E-value=2.2e+02 Score=29.18 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=63.4
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEecCCc-----------CCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-
Q 012852 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDCW-----------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW-----------~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~- 168 (455)
...|.+.|.+.++.+++ ...+++|++-|.|-.+= ...+.|.+|-=.-|..+| +..+++.|++.
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf---~~eii~air~~v 216 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARF---LLEVVDAVAEAI 216 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhH---HHHHHHHHHHHh
Confidence 46888888888777654 23456899999997542 222334453324455677 56888888864
Q ss_pred CC-eEEEEecCCccccCCCCc--ccccHHhHHHHHHhcCCcEEEeec
Q 012852 169 GL-KLGIYSDAGVFTCQVRPG--SLFHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 169 G~-k~Glw~~pg~~~c~~~Pg--~~~~~~~~~~~~~~wGidylK~D~ 212 (455)
|- .+|+=+.+.... .+.++ ..+-....++.+.+.|+|||-+-.
T Consensus 217 g~d~v~vRis~~~~~-~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~ 262 (338)
T cd02933 217 GADRVGIRLSPFGTF-NDMGDSDPEATFSYLAKELNKRGLAYLHLVE 262 (338)
T ss_pred CCCceEEEECccccC-CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence 54 355555543211 11111 112224567888899999998844
No 144
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=33.58 E-value=1.8e+02 Score=27.05 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=57.2
Q ss_pred cccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHh
Q 012852 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS 202 (455)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~ 202 (455)
++.|+++++|=.+ .|.-..|+ + ++.=++..++.||++|.|.=.-. .+.+++.+-.+..++.++.
T Consensus 22 k~~Gi~faiikat--------eG~~~~D~-~----~~~n~~~A~~aGl~vG~Yhf~~~---~~~~~a~~eA~~f~~~~~~ 85 (192)
T cd06522 22 KNYGVKAVIVKLT--------EGTTYRNP-Y----AASQIANAKAAGLKVSAYHYAHY---TSAADAQAEARYFANTAKS 85 (192)
T ss_pred HHcCCCEEEEEEc--------CCCCccCh-H----HHHHHHHHHHCCCeeEEEEEEec---CChHHHHHHHHHHHHHHHH
Confidence 4567888777542 23344564 2 56667778999999999984321 1112233223334555666
Q ss_pred cCCc---EEEeecCCCCCC-CccchhHHHHHHHHhcC--CCeeEe
Q 012852 203 WGVD---YLKYDNCFNLGI-EPKKRYPPMRDALNETG--CSIFYS 241 (455)
Q Consensus 203 wGid---ylK~D~~~~~~~-~~~~~y~~m~~AL~~~G--~~i~~~ 241 (455)
.|+. .+-+|.=..... ........+.+.+++.| ++++++
T Consensus 86 ~~~~~~~~~~lD~E~~~~~~~~~~~~~~F~~~v~~~g~~~~~iY~ 130 (192)
T cd06522 86 LGLSKNTVMVADMEDSSSSGNATANVNAFWQTMKAAGYKNTDVYT 130 (192)
T ss_pred cCCCCCCceEEEeecCCCcchHHHHHHHHHHHHHHcCCCCcEEEc
Confidence 6654 355676443321 11122245666677666 577775
No 145
>PRK08227 autoinducer 2 aldolase; Validated
Probab=32.92 E-value=2.1e+02 Score=28.49 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=70.6
Q ss_pred ceEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCe
Q 012852 92 QMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLK 171 (455)
Q Consensus 92 P~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k 171 (455)
-+..|+...++.+.+.+.+....+.+.+.|-...++..+ +. . .. . .. -+- -+..+++..|+.||-
T Consensus 78 il~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~-~G----s-~~-E-~~------~l~-~l~~v~~ea~~~G~P 142 (264)
T PRK08227 78 VLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVF-IG----S-EY-E-HQ------SIK-NIIQLVDAGLRYGMP 142 (264)
T ss_pred EEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEe-cC----C-HH-H-HH------HHH-HHHHHHHHHHHhCCc
Confidence 345666655555555555555556665545444444322 21 1 00 0 01 111 178888999999998
Q ss_pred EEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEe
Q 012852 172 LGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (455)
Q Consensus 172 ~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~ 241 (455)
.-+|...|... ....+++...++.=+|.|-|.||..++. ..++++.+++..|+++.
T Consensus 143 lla~~prG~~~----~~~~~~ia~aaRiaaELGADiVK~~y~~----------~~f~~vv~a~~vPVvia 198 (264)
T PRK08227 143 VMAVTAVGKDM----VRDARYFSLATRIAAEMGAQIIKTYYVE----------EGFERITAGCPVPIVIA 198 (264)
T ss_pred EEEEecCCCCc----CchHHHHHHHHHHHHHHcCCEEecCCCH----------HHHHHHHHcCCCcEEEe
Confidence 87776444321 1122356666677789999999999972 35667666666677765
No 146
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=32.66 E-value=68 Score=29.19 Aligned_cols=44 Identities=27% Similarity=0.417 Sum_probs=30.4
Q ss_pred ccCceEEEecCCcCCCCCCCCCCccc-CC-CCCCCCHHHHHHHHHhcCCeEEEEec
Q 012852 124 ELGYDHVNIDDCWSSPLRDLKGQLVP-DT-ITFPSGIKALADYVHGKGLKLGIYSD 177 (455)
Q Consensus 124 ~~G~~~~~iDDGW~~~~rd~~G~~~~-d~-~~FP~Gl~~l~~~v~~~G~k~Glw~~ 177 (455)
+.|+..+++|-. |.+.. +. ..|| |+.++.++++++|++++|=+.
T Consensus 22 ~~~v~~vv~D~D---------gtl~~~~~~~~~p-gv~e~L~~Lk~~g~~l~I~Sn 67 (170)
T TIGR01668 22 KVGIKGVVLDKD---------NTLVYPDHNEAYP-ALRDWIEELKAAGRKLLIVSN 67 (170)
T ss_pred HCCCCEEEEecC---------CccccCCCCCcCh-hHHHHHHHHHHcCCEEEEEeC
Confidence 467888888831 22222 12 2455 699999999999999988554
No 147
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=32.64 E-value=3.7e+02 Score=30.06 Aligned_cols=55 Identities=27% Similarity=0.330 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-CCeEEEEec
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSD 177 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~-G~k~Glw~~ 177 (455)
.+|.+.+.+.|+.+ .++|.+.|.|=| .-|-..|. -+..|+..|++. ++.++++.-
T Consensus 150 ~~t~e~~~~~ak~l-----~~~Gad~I~IkD--------taG~l~P~------~v~~lv~alk~~~~ipi~~H~H 205 (596)
T PRK14042 150 VHTLDNFLELGKKL-----AEMGCDSIAIKD--------MAGLLTPT------VTVELYAGLKQATGLPVHLHSH 205 (596)
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEeCC--------cccCCCHH------HHHHHHHHHHhhcCCEEEEEeC
Confidence 68999999999998 567888888865 33555555 489999999864 788888773
No 148
>PRK15108 biotin synthase; Provisional
Probab=32.15 E-value=1.8e+02 Score=29.97 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccC
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~ 184 (455)
++.+.|.+.|..+ ++.|++.|.+=-+|.. +....|. -+..+++.|++.|+...+ ..|
T Consensus 76 ls~eEI~~~a~~~-----~~~G~~~i~i~~~g~~----------p~~~~~e-~i~~~i~~ik~~~i~v~~--s~G----- 132 (345)
T PRK15108 76 MEVEQVLESARKA-----KAAGSTRFCMGAAWKN----------PHERDMP-YLEQMVQGVKAMGLETCM--TLG----- 132 (345)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEEecCCC----------CCcchHH-HHHHHHHHHHhCCCEEEE--eCC-----
Confidence 7889999999988 4577888887656632 1111122 388888889887765432 122
Q ss_pred CCCcccccHHhHHHHHHhcCCcEEEeecCC
Q 012852 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (455)
Q Consensus 185 ~~Pg~~~~~~~~~~~~~~wGidylK~D~~~ 214 (455)
... ++.++.|++.|+|.+-++.-.
T Consensus 133 ----~ls--~e~l~~LkeAGld~~n~~leT 156 (345)
T PRK15108 133 ----TLS--ESQAQRLANAGLDYYNHNLDT 156 (345)
T ss_pred ----cCC--HHHHHHHHHcCCCEEeecccc
Confidence 111 567888999999977665543
No 149
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=31.93 E-value=58 Score=34.56 Aligned_cols=110 Identities=14% Similarity=0.181 Sum_probs=63.3
Q ss_pred ceEEechhhhCc---------CCCH-------HHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCC
Q 012852 92 QMGWNSWNFFAC---------NISE-------TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFP 155 (455)
Q Consensus 92 P~gwnSW~~~~~---------~i~e-------~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP 155 (455)
-+.|+|=+.+.. +.+. +++++.+|.. +++|-+.+|+-.|=.+....-.-|..---+.+-
T Consensus 133 kllw~TanlFs~prf~~GA~TnPd~~Vra~A~~qvk~alD~~-----~eLGgenyV~WgGREGye~~lntD~~~e~d~~~ 207 (434)
T TIGR02630 133 KLLWGTANLFSHPRYMHGAATSPDADVFAYAAAQVKKALEVT-----KKLGGENYVFWGGREGYETLLNTDMKRELDHLA 207 (434)
T ss_pred eeeeecCCccCCccccCCcCCCCCHHHHHHHHHHHHHHHHHH-----HHhCCCeEEECCCccccccccccCHHHHHHHHH
Confidence 356888776631 2333 4455555555 668999999955433221111112211112344
Q ss_pred CCHHHHHHHHHhcCCeEEEEecCCccccCCCCcccccH---HhHHHHHHhcCCc-EEEe
Q 012852 156 SGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHE---KDDAPLFASWGVD-YLKY 210 (455)
Q Consensus 156 ~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~---~~~~~~~~~wGid-ylK~ 210 (455)
.+|+.+++|.++.|++.=+-+||- +.-|-...|. ...+..+++.|.+ .||+
T Consensus 208 ~~l~~~~dYa~~iGf~~~f~IEPK----P~EPr~hqyd~d~at~l~fl~~~gl~~~~gv 262 (434)
T TIGR02630 208 RFLHMAVDYAKKIGFKGQFLIEPK----PKEPTKHQYDFDAATVYAFLKKYGLDKDFKL 262 (434)
T ss_pred HHHHHHHHHhhhcCCCceEEeccC----CCCcccccccccHHHHHHHHHHcCChhhccc
Confidence 578999999999999877778874 2234444444 2344556788887 5553
No 150
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=31.86 E-value=99 Score=29.61 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~ 214 (455)
+.+++.+|+.|+++.+|+--. ...++.+.++|||.|=-|+..
T Consensus 195 ~~~v~~~~~~Gl~v~vwTVn~--------------~~~~~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTIND--------------LKDAQEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCCC--------------HHHHHHHHHcCCCEEEeCCCC
Confidence 579999999999999997432 236888999999999988753
No 151
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.59 E-value=1.7e+02 Score=30.12 Aligned_cols=104 Identities=21% Similarity=0.203 Sum_probs=63.4
Q ss_pred CcCCCHHHHHHHHHHHHHc--CCcccCceEEEecCCc-----------CCCCCCCC-CCcccCCCCCCCCHHHHHHHHHh
Q 012852 102 ACNISETIIKETADALVST--GLAELGYDHVNIDDCW-----------SSPLRDLK-GQLVPDTITFPSGIKALADYVHG 167 (455)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~--gl~~~G~~~~~iDDGW-----------~~~~rd~~-G~~~~d~~~FP~Gl~~l~~~v~~ 167 (455)
...+|.++|.+.++.+++. ..+++|++-|.|-.+= .+.+.|.+ |++. |..+| +..+++.|++
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGsle-nR~r~---~~eii~~vr~ 206 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLE-NRMRF---PLAVVKAVQE 206 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHH-HHHHH---HHHHHHHHHH
Confidence 3568888888887766542 2456899999887641 12123445 4543 55666 5678888875
Q ss_pred c-------CCeEEEEecCCccccCCCCccccc--HHhHHHHHHhcCCcEEEeecC
Q 012852 168 K-------GLKLGIYSDAGVFTCQVRPGSLFH--EKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 168 ~-------G~k~Glw~~pg~~~c~~~Pg~~~~--~~~~~~~~~~wGidylK~D~~ 213 (455)
. .+.+|+=+.+... .++-... ....++.+.+.|+|||-+...
T Consensus 207 ~vg~~~~~~~~v~~R~s~~~~----~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 207 VIDKHADKDFILGYRFSPEEP----EEPGIRMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred HhccccCCCceEEEEECcccc----cCCCCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 3 4556665555321 1222222 235677889999999988653
No 152
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=31.50 E-value=1.9e+02 Score=28.93 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=44.8
Q ss_pred CcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHh-cCCeEEEEecCCccccCCCCcccccHHhHHHHH
Q 012852 122 LAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLF 200 (455)
Q Consensus 122 l~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~-~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~ 200 (455)
|+++|..+|+|||--...... + .+...| -++.+.+.+++ .|..++|.+ |.. .....+
T Consensus 160 l~~~G~~~iqidEP~l~~~~~--s----~~~~~~-~~~~~~~~~~~~~~~~~~lHi------c~~---------~~~~~l 217 (321)
T cd03310 160 LKNRGIVVVQIDEPSLGAVGA--G----AFEDLE-IVDAALEEVSLKSGGDVEVHL------CAP---------LDYEAL 217 (321)
T ss_pred HHhcCCcEEEeCCCccccccc--c----ccchHH-HHHHHHHHHhhccCCceEEEE------CCC---------CCHHHH
Confidence 467899999999954432111 1 001112 26677777765 444556643 422 235567
Q ss_pred HhcCCcEEEeecCCCC
Q 012852 201 ASWGVDYLKYDNCFNL 216 (455)
Q Consensus 201 ~~wGidylK~D~~~~~ 216 (455)
.+.|+|.|-+|++...
T Consensus 218 ~~~~vd~l~~D~~~~~ 233 (321)
T cd03310 218 LELGVDVIGFDAAALP 233 (321)
T ss_pred HhCCCCEEEEecccCc
Confidence 7889999999998654
No 153
>PRK06256 biotin synthase; Validated
Probab=31.47 E-value=1.2e+02 Score=30.83 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCcccc
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c 183 (455)
..+.+.|.+.++.+. +.|+..|.|-.++... +...++. +..+++.|++. ..+-+....|.
T Consensus 90 ~~s~eeI~~~~~~~~-----~~g~~~~~l~~~g~~p----------~~~~~~~-~~e~i~~i~~~-~~i~~~~~~g~--- 149 (336)
T PRK06256 90 WLDIEELIEAAKEAI-----EEGAGTFCIVASGRGP----------SGKEVDQ-VVEAVKAIKEE-TDLEICACLGL--- 149 (336)
T ss_pred CCCHHHHHHHHHHHH-----HCCCCEEEEEecCCCC----------CchHHHH-HHHHHHHHHhc-CCCcEEecCCc---
Confidence 368899999999884 4577666665444331 1111222 67778888765 33333332221
Q ss_pred CCCCcccccHHhHHHHHHhcCCcEEEee
Q 012852 184 QVRPGSLFHEKDDAPLFASWGVDYLKYD 211 (455)
Q Consensus 184 ~~~Pg~~~~~~~~~~~~~~wGidylK~D 211 (455)
--+..++.|++.|++.+-+.
T Consensus 150 --------l~~e~l~~LkeaG~~~v~~~ 169 (336)
T PRK06256 150 --------LTEEQAERLKEAGVDRYNHN 169 (336)
T ss_pred --------CCHHHHHHHHHhCCCEEecC
Confidence 11356778888898877553
No 154
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=31.39 E-value=1e+02 Score=29.86 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
+.+++.+|++|+++..|+--. ...++.+.++|||+|=.|+-
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~--------------~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNE--------------KADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCC--------------HHHHHHHHhcCCCEEEeCCH
Confidence 579999999999999997532 23567788999999988874
No 155
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=31.25 E-value=3.9e+02 Score=29.16 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc---CCeEEEEec
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK---GLKLGIYSD 177 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~---G~k~Glw~~ 177 (455)
.+|.+.+.+.|+.+ .++|.+.|.|=| .-|-+.|. -+..|+..|++. ++.+++++-
T Consensus 151 ~~t~e~~~~~a~~l-----~~~Gad~I~IkD--------taGll~P~------~~~~LV~~Lk~~~~~~ipI~~H~H 208 (499)
T PRK12330 151 IHTVEGFVEQAKRL-----LDMGADSICIKD--------MAALLKPQ------PAYDIVKGIKEACGEDTRINLHCH 208 (499)
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEeCC--------CccCCCHH------HHHHHHHHHHHhCCCCCeEEEEeC
Confidence 56999999999999 567888888865 34555555 489999999876 588888773
No 156
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=30.87 E-value=2.8e+02 Score=25.71 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=43.8
Q ss_pred HHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEe-cCCccccCCCCcccc
Q 012852 113 TADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYS-DAGVFTCQVRPGSLF 191 (455)
Q Consensus 113 ~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~-~pg~~~c~~~Pg~~~ 191 (455)
.++.+ .++|.+++.+.... . +.-++.++++++++|+++|+=+ .|..
T Consensus 68 ~~~~~-----~~~Gad~i~vh~~~-~----------------~~~~~~~i~~~~~~g~~~~~~~~~~~t----------- 114 (206)
T TIGR03128 68 EAEQA-----FAAGADIVTVLGVA-D----------------DATIKGAVKAAKKHGKEVQVDLINVKD----------- 114 (206)
T ss_pred HHHHH-----HHcCCCEEEEeccC-C----------------HHHHHHHHHHHHHcCCEEEEEecCCCC-----------
Confidence 45555 55788888887321 0 0126889999999999999842 3321
Q ss_pred cHHhHHHHHHhcCCcEEEeec
Q 012852 192 HEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 192 ~~~~~~~~~~~wGidylK~D~ 212 (455)
....++...+.|+||+|+..
T Consensus 115 -~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 115 -KVKRAKELKELGADYIGVHT 134 (206)
T ss_pred -hHHHHHHHHHcCCCEEEEcC
Confidence 22344555778999999964
No 157
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=30.80 E-value=1.9e+02 Score=29.56 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=54.5
Q ss_pred CceEEEecCCcCCCCCCCCCCcccCCCC-----CCCCHHHHHHHHHhc-CCeEEEEecCCccccCCCCcccccHHhHHHH
Q 012852 126 GYDHVNIDDCWSSPLRDLKGQLVPDTIT-----FPSGIKALADYVHGK-GLKLGIYSDAGVFTCQVRPGSLFHEKDDAPL 199 (455)
Q Consensus 126 G~~~~~iDDGW~~~~rd~~G~~~~d~~~-----FP~Gl~~l~~~v~~~-G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~ 199 (455)
|.+.++|=|-|... .|. ..+++- +|. ++.+++++|++ |..+.++. |. .....+..
T Consensus 169 Gad~I~i~Ddwa~~----~~~-~LSpe~f~efv~P~-~krIi~~ik~~~g~piilH~------cG-------~~~~~l~~ 229 (321)
T cd03309 169 EPDLLVYHDDLGSQ----KGS-FISPATFREFILPR-MQRIFDFLRSNTSALIVHHS------CG-------AAASLVPS 229 (321)
T ss_pred CCCEEEEeCCCccc----cCC-ccCHHHHHHHHHHH-HHHHHHHHHhccCCceEEEe------CC-------CcHHHHHH
Confidence 99999997767652 112 223333 344 89999999998 44344432 21 12335777
Q ss_pred HHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEe
Q 012852 200 FASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (455)
Q Consensus 200 ~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~ 241 (455)
+.+.|+|-+-+|++.. .+.++.+..|..+.+.
T Consensus 230 ~~e~g~dvl~~d~~~~----------dl~eak~~~g~k~~l~ 261 (321)
T cd03309 230 MAEMGVDSWNVVMTAN----------NTAELRRLLGDKVVLA 261 (321)
T ss_pred HHHcCCCEEEecCCCC----------CHHHHHHHhCCCeEEE
Confidence 8889999999998751 2445555667665553
No 158
>PLN02803 beta-amylase
Probab=30.49 E-value=76 Score=34.65 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCC-CCHHHHHHHHHhcCCeEE
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFP-SGIKALADYVHGKGLKLG 173 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP-~Gl~~l~~~v~~~G~k~G 173 (455)
.+.+.+.+...++ |.+|++=|.+|-=|-..++... .+|- +|-+.|++-|++.|||+=
T Consensus 104 ~~~~~l~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~p-------~~YdWsgY~~l~~mvr~~GLKlq 161 (548)
T PLN02803 104 NKPRAMNASLMAL-----RSAGVEGVMVDAWWGLVEKDGP-------MKYNWEGYAELVQMVQKHGLKLQ 161 (548)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEEeeeeeeccCCC-------CcCCcHHHHHHHHHHHHcCCeEE
Confidence 3567788888887 7799999999965543333322 2222 379999999999999974
No 159
>PLN02455 fructose-bisphosphate aldolase
Probab=30.41 E-value=82 Score=32.55 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCccc-----ccHHhHHHHHHhcCCcEEEeecCC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSL-----FHEKDDAPLFASWGVDYLKYDNCF 214 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~-----~~~~~~~~~~~~wGidylK~D~~~ 214 (455)
++++++++++|+-+||=++-|.....+.+|.. +=+....+.+.+.|++|=||-...
T Consensus 87 ~p~~~~L~~~GIvPGIKVDkGl~~l~g~~ge~~t~GLDgL~~R~~~y~~~GarFAKWRsVi 147 (358)
T PLN02455 87 KPFVDVLKENGVLPGIKVDKGTVELAGTNGETTTQGLDGLGARCAKYYEAGARFAKWRAVL 147 (358)
T ss_pred cCHHHHHHHCCCeeeEEecCCccccCCCCCCccCcchHHHHHHHHHHHhcCCceeeceeee
Confidence 56889999999999999998765444344422 222333444555599999998753
No 160
>PLN02801 beta-amylase
Probab=30.21 E-value=79 Score=34.32 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCC-CCHHHHHHHHHhcCCeEE
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFP-SGIKALADYVHGKGLKLG 173 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP-~Gl~~l~~~v~~~G~k~G 173 (455)
.+.+.+.+...++ |.+|++=|.+|-=|-..++... .+|- +|-+.|++-|++.|||+=
T Consensus 34 ~~~~~l~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~P-------~~YdWsgY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 34 EDEEGLEKQLKRL-----KEAGVDGVMVDVWWGIVESKGP-------KQYDWSAYRSLFELVQSFGLKIQ 91 (517)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeccCCC-------CccCcHHHHHHHHHHHHcCCeEE
Confidence 4677788888888 7799999999865543333322 2222 379999999999999973
No 161
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=30.14 E-value=1e+02 Score=29.90 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~ 214 (455)
+.+++.+|++|+++..|+-.. ...++.+.++|||+|=.|.-.
T Consensus 199 ~~~v~~~~~~g~~v~~WTvn~--------------~~~~~~l~~~GVdgIiTD~p~ 240 (249)
T PRK09454 199 EARVAALKAAGLRILVYTVND--------------PARARELLRWGVDCICTDRID 240 (249)
T ss_pred HHHHHHHHHCCCEEEEEeCCC--------------HHHHHHHHHcCCCEEEeCChH
Confidence 579999999999999997432 125678899999999988753
No 162
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=29.87 E-value=4.2e+02 Score=25.90 Aligned_cols=65 Identities=6% Similarity=0.028 Sum_probs=42.8
Q ss_pred cEEEEEEecCCCceeEEEEceecC---CCCCCceEEEEccCCccccccccceEEEEEcCCCEEEEEEEeCCc
Q 012852 382 RLVVALWNRCPKAETITAQWDALG---LESSTKVSVRDLWQHKQVTGDAVSSFGAQVDAHDCQMYIFTPRTV 450 (455)
Q Consensus 382 ~~avalfN~~~~~~~iti~l~~LG---L~~~~~~~vrDlW~g~~~~g~~~~~l~~~L~pH~~~ll~ltp~~~ 450 (455)
...+=+.|.++++.-+.+.+.++- ...+....+...++++- .-..-.+.|+|.+..++||...+.
T Consensus 34 ~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eL----iaSP~~l~L~pg~~q~IRli~lg~ 101 (234)
T PRK15308 34 ATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGL----VVSPEKFALPAGTTRTVRVISLQA 101 (234)
T ss_pred eEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcE----EEcCceeEECCCCeEEEEEEEcCC
Confidence 457788999999999988887764 32221222222344332 223446899999999999987654
No 163
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=29.80 E-value=3.2e+02 Score=28.29 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=31.9
Q ss_pred cHHhHHHHHH--hcCCcEEEeecCCCC----CC-------CccchhHHHHHHHHhcCCCeeEe
Q 012852 192 HEKDDAPLFA--SWGVDYLKYDNCFNL----GI-------EPKKRYPPMRDALNETGCSIFYS 241 (455)
Q Consensus 192 ~~~~~~~~~~--~wGidylK~D~~~~~----~~-------~~~~~y~~m~~AL~~~G~~i~~~ 241 (455)
.+...++.+. +.|+|.+|+.+.... +. ...+.-..+.+..+.++.|+++.
T Consensus 185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvl 247 (340)
T PRK12858 185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFL 247 (340)
T ss_pred HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEE
Confidence 4456677888 599999999997543 11 11112234566566688888874
No 164
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=29.68 E-value=94 Score=29.32 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeec
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~ 212 (455)
+.+++.+|+.|+++.+|+-.. ...++.+.++|||+|=.|+
T Consensus 180 ~~~v~~~~~~G~~v~~wtvn~--------------~~~~~~~~~~Gvd~i~TD~ 219 (220)
T cd08579 180 KEFIRQAHQNGKKVYVWTVND--------------PDDMQRYLAMGVDGIITDY 219 (220)
T ss_pred HHHHHHHHHCCCEEEEEcCCC--------------HHHHHHHHHcCCCEEeCCC
Confidence 578999999999999997421 1346778899999997775
No 165
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=29.03 E-value=1e+02 Score=29.36 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeec
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~ 212 (455)
+.+++.+|+.|+++.+|+--. ...++.+.++|||.|=.|+
T Consensus 190 ~~~i~~~~~~g~~v~~Wtvn~--------------~~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 190 EEVVEELKKRGIPVRLWTVNE--------------EEDMKRLKDLGVDGIITNY 229 (230)
T ss_pred HHHHHHHHHCCCEEEEEecCC--------------HHHHHHHHHCCCCEEeCCC
Confidence 679999999999999998532 1356778889999998775
No 166
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=28.97 E-value=6.2e+02 Score=25.58 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCC--eEEEEecCCcc
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGL--KLGIYSDAGVF 181 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~--k~Glw~~pg~~ 181 (455)
.++.+.+.+.++.+ ++.|++.|.+=+| ..... | .+..+++++++.+. ++.|-+.. .
T Consensus 44 ~ls~eei~~li~~~-----~~~Gv~~I~~tGG----------EPllr----~-dl~~li~~i~~~~~l~~i~itTNG-~- 101 (329)
T PRK13361 44 VLSLEELAWLAQAF-----TELGVRKIRLTGG----------EPLVR----R-GCDQLVARLGKLPGLEELSLTTNG-S- 101 (329)
T ss_pred CCCHHHHHHHHHHH-----HHCCCCEEEEECc----------CCCcc----c-cHHHHHHHHHhCCCCceEEEEeCh-h-
Confidence 57899999999988 4578888888532 22332 3 38899999998764 56663331 1
Q ss_pred ccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 182 ~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
.+...++.|++.|++.|-+..-
T Consensus 102 ----------ll~~~~~~L~~aGl~~v~ISlD 123 (329)
T PRK13361 102 ----------RLARFAAELADAGLKRLNISLD 123 (329)
T ss_pred ----------HHHHHHHHHHHcCCCeEEEEec
Confidence 1345678899999998766554
No 167
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.86 E-value=88 Score=30.03 Aligned_cols=38 Identities=24% Similarity=0.207 Sum_probs=30.7
Q ss_pred HHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeec
Q 012852 161 LADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 161 l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~ 212 (455)
.+..+|+.|+++..|+--.. ..++.+.+||||+|=-|+
T Consensus 191 ~v~~~~~~G~~v~vWTVn~~--------------~~~~~l~~~GVdgiiTD~ 228 (229)
T cd08581 191 DTGDLWAGTWKWVIYEVNEP--------------AEALALAARGVALIETDN 228 (229)
T ss_pred hhHHHHhCCceEEEEEcCCH--------------HHHHHHHHhCCcEEEcCC
Confidence 46779999999999996532 357888999999997775
No 168
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=28.64 E-value=1.2e+02 Score=28.51 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeec
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~ 212 (455)
+.+++.+|++|+++..|+--. ...++.+.++|||+|=.|+
T Consensus 189 ~~~v~~~~~~g~~v~~wTvn~--------------~~~~~~~~~~gVdgiiTD~ 228 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTVND--------------PARAAELLEWGVDAIFTDR 228 (229)
T ss_pred HHHHHHHHHCCCEEEEEeCCC--------------HHHHHHHHHCCCCEEEcCC
Confidence 579999999999999996432 1356778899999998875
No 169
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=28.46 E-value=1.7e+02 Score=36.72 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=50.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCC----CCC--CCHHHHHHHHHhcCCeEEEEe
Q 012852 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTI----TFP--SGIKALADYVHGKGLKLGIYS 176 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~----~FP--~Gl~~l~~~v~~~G~k~Glw~ 176 (455)
...+-+.+.+.++.+ +++|++.+-|=--+........|....|.. .|- ++++.|++.+|++||++=|=+
T Consensus 753 ~~~tf~~~~~~l~Yl-----~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDi 827 (1693)
T PRK14507 753 KDFTFADAEAILPYL-----AALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDI 827 (1693)
T ss_pred CCCCHHHHHHHhHHH-----HHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 478899999999999 779999998877665322223354443322 232 269999999999999987755
Q ss_pred cC
Q 012852 177 DA 178 (455)
Q Consensus 177 ~p 178 (455)
-|
T Consensus 828 V~ 829 (1693)
T PRK14507 828 VP 829 (1693)
T ss_pred cc
Confidence 44
No 170
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=28.34 E-value=1.6e+02 Score=28.97 Aligned_cols=81 Identities=20% Similarity=0.186 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccC
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~ 184 (455)
.+.+.+++.++.+ ++.|+..|.|=+++... ++..|..=++.+.+.+++.|+++- ...|
T Consensus 62 ~~~eei~~~~~~~-----~~~g~~~~~l~~~g~~~----------~~~~~~~~~~~i~~~~~~~~i~~~--~~~g----- 119 (296)
T TIGR00433 62 KKVDEVLEEARKA-----KAAGATRFCLVASGRGP----------KDREFMEYVEAMVQIVEEMGLKTC--ATLG----- 119 (296)
T ss_pred CCHHHHHHHHHHH-----HHCCCCEEEEEEecCCC----------ChHHHHHHHHHHHHHHHhCCCeEE--ecCC-----
Confidence 4567788888877 44677776553434331 111111226666666666777652 1222
Q ss_pred CCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 185 ~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
... ++.++.|++.|++.+-+..-
T Consensus 120 ----~~~--~e~l~~Lk~aG~~~v~i~~E 142 (296)
T TIGR00433 120 ----LLD--PEQAKRLKDAGLDYYNHNLD 142 (296)
T ss_pred ----CCC--HHHHHHHHHcCCCEEEEccc
Confidence 111 56788999999998776644
No 171
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=28.24 E-value=1.1e+02 Score=30.76 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
+.+++.+|+.|+++.+|+--. ...++.+.+||||.|=.|+-
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd--------------~~~~~~l~~~GVdgIiTD~P 291 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLND--------------EEEFERAFELGADGVMTDYP 291 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCC--------------HHHHHHHHhcCCCEEEeCCH
Confidence 579999999999999998532 13577888999999988864
No 172
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.15 E-value=1.1e+02 Score=29.15 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
..+++.+|++|+++..|+.... ..++.+.++|||+|=.|+-
T Consensus 191 ~~~v~~~~~~G~~v~~wTvn~~--------------~~~~~l~~~GVdgi~TD~p 231 (233)
T cd08582 191 PAFIKALRDAGLKLNVWTVDDA--------------EDAKRLIELGVDSITTNRP 231 (233)
T ss_pred HHHHHHHHHCCCEEEEEeCCCH--------------HHHHHHHHCCCCEEEcCCC
Confidence 5789999999999999985431 3467778899999988864
No 173
>PLN00197 beta-amylase; Provisional
Probab=28.07 E-value=93 Score=34.16 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCC-CCHHHHHHHHHhcCCeEE
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFP-SGIKALADYVHGKGLKLG 173 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP-~Gl~~l~~~v~~~G~k~G 173 (455)
.+.+.+.+...++ |.+|++=|.+|-=|-..++... .+|- +|-+.|++-|++.|||+=
T Consensus 124 ~~~~~l~~~L~~L-----K~~GVdGVmvDvWWGiVE~~~p-------~~YdWsgY~~L~~mvr~~GLKlq 181 (573)
T PLN00197 124 NRRKAMKASLQAL-----KSAGVEGIMMDVWWGLVERESP-------GVYNWGGYNELLEMAKRHGLKVQ 181 (573)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeccCCC-------CcCCcHHHHHHHHHHHHcCCeEE
Confidence 4667788888888 7789999999965543333322 2222 379999999999999974
No 174
>PLN02425 probable fructose-bisphosphate aldolase
Probab=27.86 E-value=99 Score=32.31 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCc-----ccccHHhHHHHHHhcCCcEEEeecCCC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPG-----SLFHEKDDAPLFASWGVDYLKYDNCFN 215 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg-----~~~~~~~~~~~~~~wGidylK~D~~~~ 215 (455)
++++++++++|+-+||=++-|.....+.++ -++-+....+.+.+.|+.|=||-....
T Consensus 122 ~p~~d~L~~~GIVPGIKVDkGl~~l~G~~~e~~t~GLDgL~~R~~~y~~~GarFAKWRsVik 183 (390)
T PLN02425 122 KKFVDCLRDQNIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEYYKQGARFAKWRTVVS 183 (390)
T ss_pred cCHHHHHHHCCceeeEEecCCCCcCCCCCCCccCCChHHHHHHHHHHHHcCCceeehheeec
Confidence 679999999999999999977543322221 022223334445555999999988543
No 175
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=27.50 E-value=1.5e+02 Score=29.87 Aligned_cols=54 Identities=9% Similarity=-0.037 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCccc--ccHHhHHHHHHhcCCcEEEeecCC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSL--FHEKDDAPLFASWGVDYLKYDNCF 214 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~--~~~~~~~~~~~~wGidylK~D~~~ 214 (455)
+.+++.+|+.|+++-+|+--.... ..+..+ ...+...+.+.++|||.|=-|+-.
T Consensus 240 ~~~v~~a~~~Gl~v~vwTvn~~~~--~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~ 295 (300)
T cd08604 240 TNVVEKLQSANLTVYVEVLRNEFV--SLAFDFFADPTVEINSYVQGAGVDGFITEFPA 295 (300)
T ss_pred hHHHHHHHHCCCEEEEEEecCCcc--ccchhccCCHHHHHHHHHHHcCCCEEEecCch
Confidence 379999999999999998532100 001111 122345677889999999988753
No 176
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=27.24 E-value=98 Score=30.99 Aligned_cols=42 Identities=29% Similarity=0.330 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeec
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~ 212 (455)
+.+++.+|+.|+++..|+..... ...++.+.++|||.|-.|+
T Consensus 251 ~~~v~~~~~~Gl~v~~wTv~~n~------------~~~~~~l~~~GVdgIiTD~ 292 (293)
T cd08572 251 PSLISLVKALGLVLFTYGDDNND------------PENVKKQKELGVDGVIYDR 292 (293)
T ss_pred cHHHHHHHHcCcEEEEECCCCCC------------HHHHHHHHHcCCCEEEecC
Confidence 47999999999999999882110 2367788999999999885
No 177
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=27.23 E-value=93 Score=31.99 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=58.4
Q ss_pred chhhhCcCCCHHHHHHHHHHHHH--cCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEE
Q 012852 97 SWNFFACNISETIIKETADALVS--TGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI 174 (455)
Q Consensus 97 SW~~~~~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Gl 174 (455)
+.+.+|.+ .++.+.++|+++.+ ..|.++|+.+|+|||.-.... ++. .-.-+.+.+=..+....++.++
T Consensus 139 ~~~~~Y~~-~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~--------~~~-~~~~~v~~~n~~~~g~~~~v~~ 208 (339)
T PRK09121 139 LYDDHYKS-REKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVF--------FDE-VNDWGVAALERAIEGLKCETAV 208 (339)
T ss_pred hccccCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhhh--------hHH-HHHHHHHHHHHHHcCCCCceEE
Confidence 33345543 36666777776654 246779999999998654310 010 0001223333333445567777
Q ss_pred EecCCccccCCCCcc---------cccHHhHHHHHHhcCCcEEEeecC
Q 012852 175 YSDAGVFTCQVRPGS---------LFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 175 w~~pg~~~c~~~Pg~---------~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
+++.|... .+++ .+-++..+..|.+..||.+=++|-
T Consensus 209 HvC~G~~~---~~~~~~~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~ 253 (339)
T PRK09121 209 HICYGYGI---KANTDWKKTLGSEWRQYEEAFPKLQKSNIDIISLECH 253 (339)
T ss_pred EEeCCCCC---CCccccccccccccccHHHHHHHHHhCCCCEEEEEec
Confidence 66665321 0111 033456677788999999988885
No 178
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=27.22 E-value=97 Score=31.99 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=61.0
Q ss_pred CCceEEechhhhCc-------CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHH
Q 012852 90 TPQMGWNSWNFFAC-------NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALA 162 (455)
Q Consensus 90 ~pP~gwnSW~~~~~-------~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~ 162 (455)
++..+||+-.+.+. -.+.+.|++.|..+ ++.|...|++=.+|-+ +| ..++. +..++
T Consensus 62 ~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~a-----k~~Ga~r~c~~aagr~-----~~------~~~~~-i~~~v 124 (335)
T COG0502 62 PEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKA-----KAAGATRFCMGAAGRG-----PG------RDMEE-VVEAI 124 (335)
T ss_pred CCCCCCccccccCcCCCchhhcCCHHHHHHHHHHH-----HHcCCceEEEEEeccC-----CC------ccHHH-HHHHH
Confidence 56788888877652 36889999999999 6788666777666743 22 12333 77777
Q ss_pred HHHH-hcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEe
Q 012852 163 DYVH-GKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKY 210 (455)
Q Consensus 163 ~~v~-~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~ 210 (455)
..|+ +.||+. +...|+.+ ...++.+++.|+|++-.
T Consensus 125 ~~Vk~~~~le~--c~slG~l~-----------~eq~~~L~~aGvd~ynh 160 (335)
T COG0502 125 KAVKEELGLEV--CASLGMLT-----------EEQAEKLADAGVDRYNH 160 (335)
T ss_pred HHHHHhcCcHH--hhccCCCC-----------HHHHHHHHHcChhheec
Confidence 7787 677654 23333321 34577899999998654
No 179
>PRK06769 hypothetical protein; Validated
Probab=27.19 E-value=1.1e+02 Score=27.93 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEec
Q 012852 153 TFPSGIKALADYVHGKGLKLGIYSD 177 (455)
Q Consensus 153 ~FP~Gl~~l~~~v~~~G~k~Glw~~ 177 (455)
.|| |++++.+++|++|++++|=+.
T Consensus 29 ~~p-gv~e~L~~Lk~~G~~l~I~Tn 52 (173)
T PRK06769 29 LFP-FTKASLQKLKANHIKIFSFTN 52 (173)
T ss_pred ECC-CHHHHHHHHHHCCCEEEEEEC
Confidence 466 599999999999999998654
No 180
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=27.02 E-value=2.8e+02 Score=28.94 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=70.6
Q ss_pred CHHHHHHHHHhcCCeEEEEecCCcccc-----CCCCcccccHH---hHHHHHHhcCCcEEEeecCCCCCCCccchhHHHH
Q 012852 157 GIKALADYVHGKGLKLGIYSDAGVFTC-----QVRPGSLFHEK---DDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMR 228 (455)
Q Consensus 157 Gl~~l~~~v~~~G~k~Glw~~pg~~~c-----~~~Pg~~~~~~---~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~ 228 (455)
-++++++..+++|.-.-|=++.|...- .+.|-..+-++ ..++.+.+.||+=||+-.=..+-....+.|+.++
T Consensus 118 ~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla 197 (360)
T PRK00366 118 RVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLA 197 (360)
T ss_pred HHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHH
Confidence 589999999999998887777775321 12333333333 3467789999988888765554444577888777
Q ss_pred HHHHhcCCCeeEeeCCCCCCChh----------hhhhhccCeeeecC
Q 012852 229 DALNETGCSIFYSLCEWGVDDPA----------LWAGKVGNSWRTTG 265 (455)
Q Consensus 229 ~AL~~~G~~i~~~~c~~g~~~p~----------~w~~~~~~~~Ris~ 265 (455)
+. ...|+-+.+-+.|..... +...+++|..|+|-
T Consensus 198 ~~---~dyPLHlGvTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSL 241 (360)
T PRK00366 198 KR---CDYPLHLGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSL 241 (360)
T ss_pred hc---CCCCceecccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeC
Confidence 63 567777777666542211 23347889999985
No 181
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=26.98 E-value=1.3e+02 Score=34.46 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCcccCceEEEecCCcCCC-----CCCCCCCcccCCCCC--CCCHHHHHHHHHhcCCeEEEEecCC----
Q 012852 111 KETADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSDAG---- 179 (455)
Q Consensus 111 ~~~ad~~~~~gl~~~G~~~~~iDDGW~~~-----~rd~~G~~~~d~~~F--P~Gl~~l~~~v~~~G~k~Glw~~pg---- 179 (455)
.+.++.+ +++||+.|.|=-=+... ..+..+-..++ .+| |+.||.||+.+|++||++=|=+-+.
T Consensus 254 ~~~L~yl-----k~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 254 DDVLPRI-----KALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred HHHHHHH-----HHcCCCEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 3456666 78999998764322211 01111223344 345 3569999999999999975433221
Q ss_pred -----------cc-----------------cc--CCCCcccccHHhHHHHH-HhcCCcEEEeecC
Q 012852 180 -----------VF-----------------TC--QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNC 213 (455)
Q Consensus 180 -----------~~-----------------~c--~~~Pg~~~~~~~~~~~~-~~wGidylK~D~~ 213 (455)
.. .| ..+|+++.|+...++.+ .+++||.+.+|..
T Consensus 328 ~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV 392 (758)
T PLN02447 328 NTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGV 392 (758)
T ss_pred cccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccch
Confidence 00 01 12455666666556654 5799999999964
No 182
>PLN02161 beta-amylase
Probab=26.91 E-value=97 Score=33.72 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCC-CCHHHHHHHHHhcCCeEE
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFP-SGIKALADYVHGKGLKLG 173 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP-~Gl~~l~~~v~~~G~k~G 173 (455)
-+.+.+.+...++ |.+|++=|.+|-=|-..++... .+|- +|-+.|++-|++.|||+=
T Consensus 114 ~~~~al~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~p-------~~YdWsgY~~l~~mvr~~GLKlq 171 (531)
T PLN02161 114 KRLKALTVSLKAL-----KLAGVHGIAVEVWWGIVERFSP-------LEFKWSLYEELFRLISEAGLKLH 171 (531)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEEeeeeeeecCCC-------CcCCcHHHHHHHHHHHHcCCeEE
Confidence 3455667777777 7799999999965543333221 2222 379999999999999974
No 183
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=26.76 E-value=1.4e+02 Score=26.86 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeec
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~ 212 (455)
..+++.+|+.|+++..|.-.. ...++.+.++|||.|=.|+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~--------------~~~~~~~~~~GVdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVND--------------PEDARRLLALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCC--------------HHHHHHHHHCCCCEEecCC
Confidence 578999999999999997532 3356778889999987764
No 184
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=26.71 E-value=6.5e+02 Score=27.20 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-CCeEEEEe
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYS 176 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~-G~k~Glw~ 176 (455)
.++.+.+.+.|+.+ .++|.+.|.|=| .-|-..|. -+..|+..+++. ++.++++.
T Consensus 149 ~~t~e~~~~~a~~l-----~~~Gad~I~i~D--------t~G~l~P~------~v~~Lv~~lk~~~~vpI~~H~ 203 (467)
T PRK14041 149 VHTLEYYLEFAREL-----VDMGVDSICIKD--------MAGLLTPK------RAYELVKALKKKFGVPVEVHS 203 (467)
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEECC--------ccCCcCHH------HHHHHHHHHHHhcCCceEEEe
Confidence 57889999999988 457888888854 33555554 488999999764 77788776
No 185
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.66 E-value=1.2e+02 Score=29.26 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
+.+++++|+.|+++.+|.-.. ...++.+.++|||+|=.|+-
T Consensus 202 ~~~v~~~~~~G~~v~vWTVN~--------------~~~~~~l~~~gVdgIiTD~p 242 (249)
T cd08561 202 PRFVRAAHAAGLEVHVWTVND--------------PAEMRRLLDLGVDGIITDRP 242 (249)
T ss_pred HHHHHHHHHCCCEEEEEecCC--------------HHHHHHHHhcCCCEEEcCCH
Confidence 689999999999999998542 14677888999999988863
No 186
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=26.59 E-value=2.3e+02 Score=26.23 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=19.0
Q ss_pred CcEEEEEEecCCC-ceeEEEEceecC
Q 012852 381 HRLVVALWNRCPK-AETITAQWDALG 405 (455)
Q Consensus 381 g~~avalfN~~~~-~~~iti~l~~LG 405 (455)
+...|.++|++.+ ++++++.++.+.
T Consensus 115 ~~~~v~vvN~~~~~~~~~~l~l~g~~ 140 (189)
T smart00813 115 GSLTVKVVNRSPEEAVTVTISLRGLK 140 (189)
T ss_pred CEEEEEEEeCCCCcCEEEEEEecCCc
Confidence 3677899999855 788888877544
No 187
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=26.32 E-value=1.1e+02 Score=29.56 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHhcCCeEEEEecCCc
Q 012852 152 ITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (455)
Q Consensus 152 ~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~ 180 (455)
+.-|+ +..++++||+.|+|.||=+.|++
T Consensus 93 E~~~~-~~r~i~~Ik~~G~kaGv~lnP~T 120 (220)
T COG0036 93 EATEH-IHRTIQLIKELGVKAGLVLNPAT 120 (220)
T ss_pred ccCcC-HHHHHHHHHHcCCeEEEEECCCC
Confidence 33444 89999999999999999999986
No 188
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=26.21 E-value=1.1e+02 Score=29.78 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEee
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYD 211 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D 211 (455)
+.+++.+|+.|+++.+|+--.. ..++.+.++|||.|=-|
T Consensus 213 ~~~v~~~~~~g~~v~~WTVn~~--------------~~~~~l~~~GVdgIiTD 251 (252)
T cd08574 213 AQEIREYSKANISVNLYVVNEP--------------WLYSLLWCSGVQSVTTN 251 (252)
T ss_pred HHHHHHHHHCCCEEEEEccCCH--------------HHHHHHHHcCCCEEecC
Confidence 5799999999999999986432 25778889999998665
No 189
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=26.13 E-value=5.3e+02 Score=28.73 Aligned_cols=54 Identities=26% Similarity=0.409 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-CCeEEEEec
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSD 177 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~-G~k~Glw~~ 177 (455)
+|.+.+.+.++.+ .++|.+.|.|=| ..|-..|. -+..++..|++. ++.+++++-
T Consensus 146 ~~~~~~~~~~~~~-----~~~Gad~I~i~D--------t~G~~~P~------~v~~lv~~lk~~~~~pi~~H~H 200 (582)
T TIGR01108 146 HTLETYLDLAEEL-----LEMGVDSICIKD--------MAGILTPK------AAYELVSALKKRFGLPVHLHSH 200 (582)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEECC--------CCCCcCHH------HHHHHHHHHHHhCCCceEEEec
Confidence 7899999999998 557888888854 34555555 489999999764 788888773
No 190
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=26.09 E-value=1.4e+02 Score=28.96 Aligned_cols=23 Identities=9% Similarity=0.309 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCeEEEEecCCc
Q 012852 158 IKALADYVHGKGLKLGIYSDAGV 180 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~ 180 (455)
+..++++||+.|+|+||=+.|++
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T 121 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPAT 121 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCC
Confidence 77899999999999999999986
No 191
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=25.87 E-value=5.5e+02 Score=23.99 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCC--CCCCCCCcccCCCCCCCCHHHHHHHHHhc-CCeEEEEecCCcc
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSP--LRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSDAGVF 181 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~--~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~-G~k~Glw~~pg~~ 181 (455)
-+.+.+.+.|+.+ ++.|++-|.|..|--.. ..|.+|.-..+..+ =+..+++.+++. ++.+.+-+..+..
T Consensus 64 ~~~~~~~~aa~~~-----~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~---~~~eii~~v~~~~~~~v~vk~r~~~~ 135 (231)
T cd02801 64 SDPETLAEAAKIV-----EELGADGIDLNMGCPSPKVTKGGAGAALLKDPE---LVAEIVRAVREAVPIPVTVKIRLGWD 135 (231)
T ss_pred CCHHHHHHHHHHH-----HhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHH---HHHHHHHHHHHhcCCCEEEEEeeccC
Confidence 3678888888887 55789999988663211 12333332222112 267888888753 4444443333210
Q ss_pred ccCCCCcccccHHhHHHHHHhcCCcEEEeec
Q 012852 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (455)
Q Consensus 182 ~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~ 212 (455)
+ ..-....++.+.+.|+|+|.+..
T Consensus 136 -----~--~~~~~~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 136 -----D--EEETLELAKALEDAGASALTVHG 159 (231)
T ss_pred -----C--chHHHHHHHHHHHhCCCEEEECC
Confidence 0 12345667888999999998754
No 192
>PLN02705 beta-amylase
Probab=25.66 E-value=99 Score=34.42 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCC-CCHHHHHHHHHhcCCeEE
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFP-SGIKALADYVHGKGLKLG 173 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP-~Gl~~l~~~v~~~G~k~G 173 (455)
.+.+.+.+...++ +.+|++=|.+|-=|-..++... .+|- +|-+.|++-|++.|||+=
T Consensus 265 ~~~~al~a~L~aL-----K~aGVdGVmvDVWWGiVE~~~P-------~~YdWsgY~~L~~mvr~~GLKlq 322 (681)
T PLN02705 265 VDPEGVRQELSHM-----KSLNVDGVVVDCWWGIVEGWNP-------QKYVWSGYRELFNIIREFKLKLQ 322 (681)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeEeecCCC-------CcCCcHHHHHHHHHHHHcCCeEE
Confidence 4678888888888 7799999999965533333221 2222 379999999999999974
No 193
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=25.39 E-value=1.7e+02 Score=23.99 Aligned_cols=49 Identities=24% Similarity=0.340 Sum_probs=32.3
Q ss_pred ccCceEEEecCCcCCCCCCC-CCC-cccCCCCCCCCHHHHHHHHHhcCCeEEEEecCC
Q 012852 124 ELGYDHVNIDDCWSSPLRDL-KGQ-LVPDTITFPSGIKALADYVHGKGLKLGIYSDAG 179 (455)
Q Consensus 124 ~~G~~~~~iDDGW~~~~rd~-~G~-~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg 179 (455)
.+|++.+.+.+. .|. .+. -.|+|.. .-++.+.+.+++.|..+|+.++|-
T Consensus 43 ~lg~~~~~~n~~-----~d~~f~~~~~p~p~~--~~l~~~~~~v~~~~ad~g~~~DgD 93 (104)
T PF02879_consen 43 RLGCDVIELNCD-----PDPDFPNQHAPNPEE--ESLQRLIKIVRESGADLGIAFDGD 93 (104)
T ss_dssp HTTCEEEEESSS------STTGTTTSTSSTST--TTTHHHHHHHHHSTTSEEEEE-TT
T ss_pred HcCCcEEEEecc-----ccccccccccccccc--chhHHHHHHhhccCceEEEEECCc
Confidence 457777777642 111 122 3455544 459999999999999999999884
No 194
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=25.32 E-value=2.7e+02 Score=25.77 Aligned_cols=102 Identities=14% Similarity=0.055 Sum_probs=0.0
Q ss_pred CcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEecCCccccCCC-CcccccHHhHHHHH
Q 012852 122 LAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVR-PGSLFHEKDDAPLF 200 (455)
Q Consensus 122 l~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~-Pg~~~~~~~~~~~~ 200 (455)
++..|++++.|-. ..|.-.+|+. +..-.+..++.||+.|+|+-+ |++. ....+-.+..++.+
T Consensus 18 vk~~g~~fv~ika--------teg~~~~D~~-----f~~n~~~A~~aGl~~G~Yhf~----~~~~~~~~~~Qa~~f~~~~ 80 (196)
T cd06416 18 LKNNGYSFAIIRA--------YRSNGSFDPN-----SVTNIKNARAAGLSTDVYFFP----CINCCGSAAGQVQTFLQYL 80 (196)
T ss_pred HHhCCceEEEEEE--------EccCCccChH-----HHHHHHHHHHcCCccceEEEe----cCCCCCCHHHHHHHHHHHH
Q ss_pred HhcCCcE--EEeecCC------CCCCCccchhHHHHHHHHhcCCCeeE
Q 012852 201 ASWGVDY--LKYDNCF------NLGIEPKKRYPPMRDALNETGCSIFY 240 (455)
Q Consensus 201 ~~wGidy--lK~D~~~------~~~~~~~~~y~~m~~AL~~~G~~i~~ 240 (455)
+..+.++ |-+|.-. .+.....+....+.+.+++.|...++
T Consensus 81 ~~~~~~~~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~i 128 (196)
T cd06416 81 KANGIKYGTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGI 128 (196)
T ss_pred HhCCCceeEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEE
No 195
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=25.07 E-value=5.3e+02 Score=28.64 Aligned_cols=221 Identities=20% Similarity=0.237 Sum_probs=108.9
Q ss_pred cCCCCCCCceEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCC-----CCCCC--
Q 012852 84 NNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDT-----ITFPS-- 156 (455)
Q Consensus 84 ~~~~~~~pP~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~-----~~FP~-- 156 (455)
+..+.+-|=.||=| .|....+.+...+.++.|. .+-+.-++.=| |+-.. + .+.+.. ..|++
T Consensus 96 SsdW~~fPRYGfls--~f~~~~~~~~~~~~i~~L~-----~yHIN~~QFYD-W~~rH-~---~Pl~~~~~~~~~~w~D~~ 163 (559)
T PF13199_consen 96 SSDWTRFPRYGFLS--DFDKSKSAEDIEAEIDQLN-----RYHINGLQFYD-WMYRH-H---KPLPGTNGQPDQTWTDWA 163 (559)
T ss_dssp -SSTTSS--EEEE-----GGGGGHHHHHHHHHHHH-----HTT--EEEETS---SBT-T---B-S-SSS-EEE-TT-TTT
T ss_pred cCCcccCCcceEec--CCCCcCCchhHHHHHHHHH-----hhCcCeEEEEe-ecccc-C---CcCCCCCCchhhhhhhhc
Confidence 33455656667655 2333457888899999984 45566666654 66421 1 122222 25554
Q ss_pred -------CHHHHHHHHHhcCCeEEEEecCC----------c--------cc------------------c---CCCCccc
Q 012852 157 -------GIKALADYVHGKGLKLGIYSDAG----------V--------FT------------------C---QVRPGSL 190 (455)
Q Consensus 157 -------Gl~~l~~~v~~~G~k~Glw~~pg----------~--------~~------------------c---~~~Pg~~ 190 (455)
=+|..|+.+|+.||+.-.|..-- . .. + +++|+-+
T Consensus 164 ~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ 243 (559)
T PF13199_consen 164 NRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQ 243 (559)
T ss_dssp --EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHH
T ss_pred CCEehHHHHHHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHH
Confidence 37999999999999998887531 0 00 0 2344456
Q ss_pred ccH-HhHHHHHHhcCCcEEEeecCCCCC---------C-CccchhHHHHHHHHhcC--CCeeEee-CCCCCC-----Chh
Q 012852 191 FHE-KDDAPLFASWGVDYLKYDNCFNLG---------I-EPKKRYPPMRDALNETG--CSIFYSL-CEWGVD-----DPA 251 (455)
Q Consensus 191 ~~~-~~~~~~~~~wGidylK~D~~~~~~---------~-~~~~~y~~m~~AL~~~G--~~i~~~~-c~~g~~-----~p~ 251 (455)
.|+ ++..+.+...|||.+-+|-.+... . .....|..+.+++++.. ..++++- ..||.. .+.
T Consensus 244 ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~~~g~~~~a~~~~~ 323 (559)
T PF13199_consen 244 NYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVSGYGIEQIAKTSKV 323 (559)
T ss_dssp HHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GGGTTHHHHTT-S--
T ss_pred HHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccCccchhhhhccccc
Confidence 666 466677889999999999876321 1 12456666667766544 4455552 334321 111
Q ss_pred hhhhhccCeeeecCCCCCChhHHHHHHHhhcccccccCCC----CcCCCCccccCCCCCCHHHHHHHHHHHHHHhCceee
Q 012852 252 LWAGKVGNSWRTTGDINDTWASMTSIADINDKWASYAGPG----GWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLI 327 (455)
Q Consensus 252 ~w~~~~~~~~Ris~Di~~~W~~~~~~~~~~~~~~~~~g~g----~~nDpDmL~vg~~~lT~~E~rt~~slwa~~gsPL~i 327 (455)
. --|..+| |..++...+.+.++.+..++.-.+.. .|-.. + -|+.-.-+-.++.|.-|+.|.+
T Consensus 324 d--~lY~EvW----~~~~~Y~~Lk~~i~~~r~~~~~~gk~~V~AAYmn~----f----n~~~vlLtdA~i~A~Gg~Hlel 389 (559)
T PF13199_consen 324 D--FLYNEVW----DDYDTYGDLKRIIDQNRKYTSSGGKSTVVAAYMNY----F----NTPSVLLTDAVIFASGGSHLEL 389 (559)
T ss_dssp S--SEEEE------SBS-BHHHHHHHHHHHHHHH---S--EEEE---------------HHHHHHHHHHHHHTT-EEE-E
T ss_pred c--eeeeecc----cccccHHHHHHHHHHHhhhhccccchhhhHHHhhh----c----cchhhHHHHHHHHHCCCceeee
Confidence 1 1356788 34567778888887655442101110 11111 0 1334444556666666889999
Q ss_pred cCC
Q 012852 328 GCD 330 (455)
Q Consensus 328 s~D 330 (455)
|++
T Consensus 390 Gd~ 392 (559)
T PF13199_consen 390 GDG 392 (559)
T ss_dssp TTS
T ss_pred cCC
Confidence 873
No 196
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=25.06 E-value=1.3e+02 Score=34.26 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=48.9
Q ss_pred CHHHHHHHHHhcCCeEEEEecC-------------------------------Cc----ccc-----CCCCcccccHHhH
Q 012852 157 GIKALADYVHGKGLKLGIYSDA-------------------------------GV----FTC-----QVRPGSLFHEKDD 196 (455)
Q Consensus 157 Gl~~l~~~v~~~G~k~Glw~~p-------------------------------g~----~~c-----~~~Pg~~~~~~~~ 196 (455)
.+|.||+.+|++||++=|=+-. +. ..| ..+|.++.|+...
T Consensus 246 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~ 325 (688)
T TIGR02100 246 EFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDS 325 (688)
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHH
Confidence 4999999999999996542211 00 012 2367778888766
Q ss_pred HHHHH-hcCCcEEEeecCCCCCCC--ccchhHHHHHHHHh
Q 012852 197 APLFA-SWGVDYLKYDNCFNLGIE--PKKRYPPMRDALNE 233 (455)
Q Consensus 197 ~~~~~-~wGidylK~D~~~~~~~~--~~~~y~~m~~AL~~ 233 (455)
++.+. ++|||.+.+|....-... .......+.++|++
T Consensus 326 l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 326 LRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 66665 899999999986543221 11122356666665
No 197
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=24.96 E-value=3.9e+02 Score=29.44 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=27.1
Q ss_pred CCCCcccccHHhHHHHHHhcCCcEEEeecCC
Q 012852 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (455)
Q Consensus 184 ~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~ 214 (455)
..+|.+++++...++.+.+.|||.+.+|...
T Consensus 173 ~~np~V~~~l~~~~~~W~~~GvDGfRlDa~~ 203 (551)
T PRK10933 173 WENPAVRAELKKVCEFWADRGVDGLRLDVVN 203 (551)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCcEEEEcchh
Confidence 4589999999999998889999999999654
No 198
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=24.73 E-value=1e+02 Score=31.10 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=39.3
Q ss_pred CCCcccccH--HhHHHHHHhcCCcEEEeecCCCCCCC--ccchhHHHHHHHHhcCCCeeEeeCC
Q 012852 185 VRPGSLFHE--KDDAPLFASWGVDYLKYDNCFNLGIE--PKKRYPPMRDALNETGCSIFYSLCE 244 (455)
Q Consensus 185 ~~Pg~~~~~--~~~~~~~~~wGidylK~D~~~~~~~~--~~~~y~~m~~AL~~~G~~i~~~~c~ 244 (455)
.+|+-.+-. +..+..+++||+|||-+--...+... +...+.+--+.|+.-.+.|+++ |-
T Consensus 134 R~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE-~L 196 (360)
T KOG2672|consen 134 RNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVE-CL 196 (360)
T ss_pred CCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccchh-hc
Confidence 345544433 45788899999999999887776542 3445555555666666777776 63
No 199
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.46 E-value=1.3e+02 Score=29.00 Aligned_cols=41 Identities=29% Similarity=0.334 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
..+++.+|++|+++.+|+-.. ...++.+.++|||+|=.|+-
T Consensus 221 ~~~i~~~~~~G~~v~vwtvn~--------------~~~~~~~~~~Gvdgi~TD~P 261 (263)
T cd08567 221 KELVDEAHALGLKVVPWTVND--------------PEDMARLIDLGVDGIITDYP 261 (263)
T ss_pred HHHHHHHHHCCCEEEEecCCC--------------HHHHHHHHHcCCCEEEcCCC
Confidence 579999999999999997531 13567788999999988863
No 200
>PLN02227 fructose-bisphosphate aldolase I
Probab=24.45 E-value=1.2e+02 Score=31.79 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCc-----ccccHHhHHHHHHhcCCcEEEeecCCC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPG-----SLFHEKDDAPLFASWGVDYLKYDNCFN 215 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg-----~~~~~~~~~~~~~~wGidylK~D~~~~ 215 (455)
++++++++++|+-+||=++-|.....+.++ -++-+....+.+.+-|+.|=||-....
T Consensus 131 ~pf~d~L~~~GIVPGIKVDKGl~~l~g~~~e~~tqGLDgL~~R~~~Y~~~GarFAKWRsVik 192 (399)
T PLN02227 131 KKMVDVLVEQNIVPGIKVDKGLVPLVGSYDESWCQGLDGLASRTAAYYQQGARFAKWRTVVS 192 (399)
T ss_pred cCHHHHHHHCCCeeeEEcCCCcccCCCCCCCccCCChHHHHHHHHHHHHcCCceeehheeec
Confidence 678899999999999999877543322222 122233334445566999999988543
No 201
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=24.17 E-value=46 Score=33.38 Aligned_cols=144 Identities=10% Similarity=0.154 Sum_probs=69.9
Q ss_pred ceEEechhhhCcCCCHHHHHHHHHHHHHcCCcccCceEEEe-----cCCcCCCCCCCCCCcc-------------cCCCC
Q 012852 92 QMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNI-----DDCWSSPLRDLKGQLV-------------PDTIT 153 (455)
Q Consensus 92 P~gwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~i-----DDGW~~~~rd~~G~~~-------------~d~~~ 153 (455)
|+| .|.+..-...+.+++...++..++ .|++.|++ .|++... +..|... +|++=
T Consensus 15 ~lg-dT~W~~~~~~~~~e~~~yL~~r~~-----qgFN~iq~~~l~~~~~~~~~--n~~~~~~~~~~~~~~~d~~~~N~~Y 86 (289)
T PF13204_consen 15 WLG-DTAWSLFHRLTREEWEQYLDTRKE-----QGFNVIQMNVLPQWDGYNTP--NRYGFAPFPDEDPGQFDFTRPNPAY 86 (289)
T ss_dssp EEE-EE-TTHHHH--HHHHHHHHHHHHH-----TT--EEEEES-SSSS-B------TTS-BS-SSTT------TT----H
T ss_pred ehh-HHHHHHhhCCCHHHHHHHHHHHHH-----CCCCEEEEEeCCCccccccc--ccCCCcCCCCCCccccCCCCCCHHH
Confidence 566 455555567888888888888855 45555544 2233221 1122221 33333
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEec------CCcccc----CCCCcccccHHhHHHHHHhc-CCcEE-EeecCCCCCCCcc
Q 012852 154 FPSGIKALADYVHGKGLKLGIYSD------AGVFTC----QVRPGSLFHEKDDAPLFASW-GVDYL-KYDNCFNLGIEPK 221 (455)
Q Consensus 154 FP~Gl~~l~~~v~~~G~k~Glw~~------pg~~~c----~~~Pg~~~~~~~~~~~~~~w-Gidyl-K~D~~~~~~~~~~ 221 (455)
|=. +..+++.+.++||.+.|=.. ++...- .+.-....|.+-+++.|++. .|=++ =-|. .......
T Consensus 87 F~~-~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~--~~~~~~~ 163 (289)
T PF13204_consen 87 FDH-LDRRIEKANELGIEAALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY--FDTEKTR 163 (289)
T ss_dssp HHH-HHHHHHHHHHTT-EEEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS----TTSSH
T ss_pred HHH-HHHHHHHHHHCCCeEEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc--CCCCcCH
Confidence 333 89999999999999985221 111100 11112456777788888877 44332 1122 1223356
Q ss_pred chhHHHHHHHHhcCCCeeEeeCCCC
Q 012852 222 KRYPPMRDALNETGCSIFYSLCEWG 246 (455)
Q Consensus 222 ~~y~~m~~AL~~~G~~i~~~~c~~g 246 (455)
+.+.+|.+.|++..+.-+.++++.+
T Consensus 164 ~~w~~~~~~i~~~dp~~L~T~H~~~ 188 (289)
T PF13204_consen 164 ADWDAMARGIKENDPYQLITIHPCG 188 (289)
T ss_dssp HHHHHHHHHHHHH--SS-EEEEE-B
T ss_pred HHHHHHHHHHHhhCCCCcEEEeCCC
Confidence 7788899988865542266665544
No 202
>PRK11059 regulatory protein CsrD; Provisional
Probab=24.14 E-value=1e+02 Score=34.26 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=42.6
Q ss_pred CHHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCCCCCCCc----cchhHHHHHHHH
Q 012852 157 GIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEP----KKRYPPMRDALN 232 (455)
Q Consensus 157 Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~----~~~y~~m~~AL~ 232 (455)
.+.++++.++++|++++|= ...+... -...+++..+||||+|-...-.... ..-.+.+.+...
T Consensus 534 ~~~~~l~~L~~~G~~iaid------dfG~g~~-------s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~ 600 (640)
T PRK11059 534 RLRPVLRMLRGLGCRLAVD------QAGLTVV-------STSYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACA 600 (640)
T ss_pred HHHHHHHHHHHCCCEEEEE------CCCCCcc-------cHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHH
Confidence 4788888889999888872 1111111 2356788899999999865433221 111234444444
Q ss_pred hcCCCeeEe
Q 012852 233 ETGCSIFYS 241 (455)
Q Consensus 233 ~~G~~i~~~ 241 (455)
..|-.++.+
T Consensus 601 ~~~i~viAe 609 (640)
T PRK11059 601 GTETQVFAT 609 (640)
T ss_pred HCCCeEEEE
Confidence 566666555
No 203
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=24.01 E-value=2.1e+02 Score=28.54 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCeEEEEecCCc---c------ccCCCCccc-ccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHH
Q 012852 158 IKALADYVHGKGLKLGIYSDAGV---F------TCQVRPGSL-FHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPM 227 (455)
Q Consensus 158 l~~l~~~v~~~G~k~Glw~~pg~---~------~c~~~Pg~~-~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m 227 (455)
...+++..|+.|+|.=+-+.-.. . .....|..+ .+++..++.+.++|+|.|-+|+-+... +..+.|..+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~f 125 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQF 125 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHH
Confidence 35788999999998765553110 0 113445544 467888899999999999999976432 224456544
Q ss_pred HHHH
Q 012852 228 RDAL 231 (455)
Q Consensus 228 ~~AL 231 (455)
.+.|
T Consensus 126 l~~l 129 (313)
T cd02874 126 LREL 129 (313)
T ss_pred HHHH
Confidence 4444
No 204
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=23.92 E-value=1.4e+02 Score=30.55 Aligned_cols=42 Identities=10% Similarity=-0.042 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecCC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~ 214 (455)
+.+++.+|+.|+++.+|+--.. ..++.+.++|||.|=-|+..
T Consensus 235 ~~~v~~a~~~Gl~V~vWTVNd~--------------~~~~~l~~~GVDgIiTD~P~ 276 (316)
T cd08610 235 SNDIRDYKAANIHTNVYVINEP--------------WLFSLAWCSGIHSVTTNNIH 276 (316)
T ss_pred HHHHHHHHHCCCEEEEECCCCH--------------HHHHHHHhCCcCEEEeCCHH
Confidence 5789999999999999986431 35778889999999999864
No 205
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=23.31 E-value=3.4e+02 Score=29.77 Aligned_cols=32 Identities=22% Similarity=0.105 Sum_probs=27.5
Q ss_pred CCCCcccccHHhHHHHHHhcCCcEEEeecCCC
Q 012852 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFN 215 (455)
Q Consensus 184 ~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~ 215 (455)
..+|.+++++...++.+.+.|||.+.+|...+
T Consensus 166 ~~np~v~~~i~~~~~~W~~~giDGfRlDa~~~ 197 (543)
T TIGR02403 166 WENPEVREELKDVVNFWRDKGVDGFRLDVINL 197 (543)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEeeehh
Confidence 45789999999889988889999999997643
No 206
>PRK04326 methionine synthase; Provisional
Probab=23.24 E-value=2.6e+02 Score=28.23 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHH--cCCcccCceEEEecCC-cCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HhcCCeEEEEecCCccc
Q 012852 107 ETIIKETADALVS--TGLAELGYDHVNIDDC-WSSPLRDLKGQLVPDTITFPSGIKALADYV-HGKGLKLGIYSDAGVFT 182 (455)
Q Consensus 107 e~~i~~~ad~~~~--~gl~~~G~~~~~iDDG-W~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v-~~~G~k~Glw~~pg~~~ 182 (455)
++.+.+.++.+.+ ..|.+.|+++++|||- +.. .++.+.. ..+..+.+ ...+.+.+|.++.|.
T Consensus 153 ~e~~~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~-----------~~~~~~~-~~~~l~~~~~~~~~~v~lH~C~G~-- 218 (330)
T PRK04326 153 EELVFDLAKVINEEIKNLVEAGAKYIQIDEPALAT-----------HPEDVEI-AVEALNRIVKGINAKLGLHVCYGD-- 218 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEecCchhhc-----------CHHHHHH-HHHHHHHHHhCCCCEEEEEEeCCC--
Confidence 4444444443332 1357789999999983 332 0111100 11222222 123456666554432
Q ss_pred cCCCCcccccHHhHHHHHHhcCCcEEEeecCC
Q 012852 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (455)
Q Consensus 183 c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~ 214 (455)
.......+.+.|+|.|-+|++.
T Consensus 219 ----------~~~~~~~l~~~~vd~i~~d~~~ 240 (330)
T PRK04326 219 ----------YSRIAPYILEFPVDQFDLEFAN 240 (330)
T ss_pred ----------cHHHHHHHHhCCCCEEEEEeCC
Confidence 2346778899999999999975
No 207
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=23.06 E-value=1.5e+02 Score=30.51 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCeE-EEEe-cCC--cccc----CC-CCcccccHHhHHHHHHhcCCcEEEeecCCCC-CCCccchhHHHH
Q 012852 159 KALADYVHGKGLKL-GIYS-DAG--VFTC----QV-RPGSLFHEKDDAPLFASWGVDYLKYDNCFNL-GIEPKKRYPPMR 228 (455)
Q Consensus 159 ~~l~~~v~~~G~k~-Glw~-~pg--~~~c----~~-~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~-~~~~~~~y~~m~ 228 (455)
...++..|+.|.++ |.-+ ++. ...| .. ..+.+.+.+.++++.+.+|||.+=+|+=... .....+++..+.
T Consensus 49 ~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~ 128 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFL 128 (339)
T ss_pred cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHH
Confidence 46888999999996 5444 442 2223 23 4456777789999999999999999996554 233356666666
Q ss_pred HHHHh
Q 012852 229 DALNE 233 (455)
Q Consensus 229 ~AL~~ 233 (455)
+.|.+
T Consensus 129 ~~L~~ 133 (339)
T cd06547 129 RYLKA 133 (339)
T ss_pred HHHHH
Confidence 65543
No 208
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=22.98 E-value=1.4e+02 Score=30.49 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
+.+++.+|+.|+++..|+--. ...++.+.++|||.|=-|+-
T Consensus 235 ~~~v~~~~~~G~~v~vWTVNd--------------~~~~~~l~~~GVDgIiTD~P 275 (315)
T cd08609 235 ALEIKELRKDNVSVNLWVVNE--------------PWLFSLLWCSGVSSVTTNAC 275 (315)
T ss_pred HHHHHHHHHCCCEEEEECCCC--------------HHHHHHHHhcCCCEEEcCCH
Confidence 678999999999999998643 23578899999999998874
No 209
>PRK01060 endonuclease IV; Provisional
Probab=22.84 E-value=6.3e+02 Score=24.44 Aligned_cols=121 Identities=17% Similarity=0.093 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEE-EEe-cCCc-cccCCC
Q 012852 110 IKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLG-IYS-DAGV-FTCQVR 186 (455)
Q Consensus 110 i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~G-lw~-~pg~-~~c~~~ 186 (455)
+.+.++.+ +++||+.|.|.-+--. .|.. +..=|.-++.+-+.+++.|++++ +.. .|-. ..|...
T Consensus 14 ~~~~l~~~-----~~~G~d~vEl~~~~p~-------~~~~-~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d 80 (281)
T PRK01060 14 LEGAVAEA-----AEIGANAFMIFTGNPQ-------QWKR-KPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPN 80 (281)
T ss_pred HHHHHHHH-----HHcCCCEEEEECCCCC-------CCcC-CCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCC
Confidence 66777777 6789999998532110 1110 01111237778888899999854 222 1211 112222
Q ss_pred Cc----ccccHHhHHHHHHhcCCcEEEeecCCCCCCCc-cchhHHHHHHHHh-----cCCCeeEeeC
Q 012852 187 PG----SLFHEKDDAPLFASWGVDYLKYDNCFNLGIEP-KKRYPPMRDALNE-----TGCSIFYSLC 243 (455)
Q Consensus 187 Pg----~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~-~~~y~~m~~AL~~-----~G~~i~~~~c 243 (455)
|. +.++++..++.-++.|+.+|.+=......... .+.+..+.++|++ .|-.+.++.+
T Consensus 81 ~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~ 147 (281)
T PRK01060 81 KEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENT 147 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 32 34556667777789999999983221111111 2355656665542 2334555544
No 210
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=22.83 E-value=7e+02 Score=24.13 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-CCeEEEEecCCccccCCC
Q 012852 108 TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSDAGVFTCQVR 186 (455)
Q Consensus 108 ~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~-G~k~Glw~~pg~~~c~~~ 186 (455)
..+.+..+.+ +++||+++.|+-+.... ....+ .=+..++.+.+.+.+. |+.+.+...--...+...
T Consensus 10 ~~l~~~l~~a-----~~~G~d~vEl~~~~~~~------~~~~~--~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 76 (279)
T cd00019 10 FGLENALKRA-----KEIGFDTVAMFLGNPRS------WLSRP--LKKERAEKFKAIAEEGPSICLSVHAPYLINLASPD 76 (279)
T ss_pred ccHHHHHHHH-----HHcCCCEEEEEcCCCCc------cCCCC--CCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCC
Confidence 4456666766 67899998876433210 11010 0123588898999888 888765321000111111
Q ss_pred Cc----ccccHHhHHHHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHH-------hcCCCeeEeeCCC
Q 012852 187 PG----SLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALN-------ETGCSIFYSLCEW 245 (455)
Q Consensus 187 Pg----~~~~~~~~~~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~-------~~G~~i~~~~c~~ 245 (455)
|+ +.++++..++..++.|++++-+-.-........+.+..+.+.|+ +.|-.+.++.+.+
T Consensus 77 ~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~ 146 (279)
T cd00019 77 KEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAG 146 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCC
Confidence 22 34455677788889999998774433222223344444444432 3344555655543
No 211
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=22.76 E-value=7.2e+02 Score=24.20 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-CC-eEEEEe--cCCc
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GL-KLGIYS--DAGV 180 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~-G~-k~Glw~--~pg~ 180 (455)
.+++.+.+.++.+ .++|.+.|.|=| ..|...|.. +..+++.+++. +. ++|+.. +.|+
T Consensus 138 ~~~~~~~~~~~~~-----~~~G~d~i~l~D--------T~G~~~P~~------v~~lv~~l~~~~~~~~l~~H~Hn~~Gl 198 (263)
T cd07943 138 ASPEELAEQAKLM-----ESYGADCVYVTD--------SAGAMLPDD------VRERVRALREALDPTPVGFHGHNNLGL 198 (263)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEcC--------CCCCcCHHH------HHHHHHHHHHhCCCceEEEEecCCcch
Q ss_pred cccCCCCcccccHHhHHHHHH--hcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCC
Q 012852 181 FTCQVRPGSLFHEKDDAPLFA--SWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (455)
Q Consensus 181 ~~c~~~Pg~~~~~~~~~~~~~--~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~ 237 (455)
..+..++ +.|+++|--=.++.+...+......+..+|+..|.+
T Consensus 199 --------------A~AN~laAi~aGa~~vd~s~~GlG~~aGN~~~E~lv~~L~~~g~~ 243 (263)
T cd07943 199 --------------AVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLERMGIE 243 (263)
T ss_pred --------------HHHHHHHHHHhCCCEEEeecccccCCcCCccHHHHHHHHHhcCCC
No 212
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=22.73 E-value=1.5e+02 Score=29.23 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
+.+++.+|++|+++..|+-.-. . ...++.+.++|||.|=.|+-
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~n-----~-------~~~~~~l~~~GVdgIiTD~p 277 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLNN-----D-------PENAKTQVKAGVDAVIVDSV 277 (286)
T ss_pred hHHHHHHHHCCcEEEEECCccC-----C-------HHHHHHHHHcCCCEEEECCH
Confidence 4689999999999999974110 0 12567888999999988864
No 213
>PLN02905 beta-amylase
Probab=22.72 E-value=1.2e+02 Score=33.80 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCC-CCHHHHHHHHHhcCCeEE
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFP-SGIKALADYVHGKGLKLG 173 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP-~Gl~~l~~~v~~~G~k~G 173 (455)
.+.+.+.+...++ |.+|++=|.+|-=|-..++... .+|- +|-+.|++-|++.|||+=
T Consensus 283 ~~~~al~a~L~aL-----K~aGVdGVmvDVWWGiVE~~gP-------~~YdWsgY~~L~~mvr~~GLKlq 340 (702)
T PLN02905 283 ADPDGLLKQLRIL-----KSINVDGVKVDCWWGIVEAHAP-------QEYNWNGYKRLFQMVRELKLKLQ 340 (702)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeecCCC-------CcCCcHHHHHHHHHHHHcCCeEE
Confidence 4566777778877 7799999999965533333221 2222 379999999999999974
No 214
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.64 E-value=7.5e+02 Score=27.57 Aligned_cols=53 Identities=26% Similarity=0.346 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-CCeEEEEe
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYS 176 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~-G~k~Glw~ 176 (455)
+|.+.+.+.++.+ .++|.+.|.|=| ..|-..|. -+..|+..+++. ++.+|++.
T Consensus 151 ~t~~~~~~~a~~l-----~~~Gad~I~i~D--------t~G~~~P~------~~~~lv~~lk~~~~~pi~~H~ 204 (592)
T PRK09282 151 HTIEKYVELAKEL-----EEMGCDSICIKD--------MAGLLTPY------AAYELVKALKEEVDLPVQLHS 204 (592)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEECC--------cCCCcCHH------HHHHHHHHHHHhCCCeEEEEE
Confidence 6899999999998 457888888854 34555554 589999999865 78888877
No 215
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=22.57 E-value=1.2e+02 Score=30.74 Aligned_cols=85 Identities=21% Similarity=0.165 Sum_probs=53.5
Q ss_pred cccCceEEEecCCcCCCCCCCCCCcccCCCC-----CCCCHHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHH
Q 012852 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTIT-----FPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDA 197 (455)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~-----FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~ 197 (455)
.+.|.+.|+++|.|.... . .+++- .|. ++.+++.+|++ .+.|+++.. ....+
T Consensus 190 ~~aGad~I~i~d~~a~~~------~-lsp~~f~ef~~p~-~~~i~~~i~~~--~~ilH~cG~-------------~~~~l 246 (339)
T PRK06252 190 LEAGADVICIADPSASPE------L-LGPKMFEEFVLPY-LNKIIDEVKGL--PTILHICGD-------------LTSIL 246 (339)
T ss_pred HHcCCCEEEeCCCCcccc------c-cCHHHHHHHHHHH-HHHHHHHhccC--CcEEEECCC-------------chHHH
Confidence 567999999999996521 1 11111 233 78899999876 555554421 12356
Q ss_pred HHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEe
Q 012852 198 PLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (455)
Q Consensus 198 ~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~ 241 (455)
..+.+.|+|-+-+|+.. .+.++.+..|.++.+.
T Consensus 247 ~~~~~~g~d~~~~d~~~-----------dl~~~~~~~g~~~~i~ 279 (339)
T PRK06252 247 EEMADCGFDGISIDEKV-----------DVKTAKENVGDRAALI 279 (339)
T ss_pred HHHHhcCCCeeccCCCC-----------CHHHHHHHhCCCeEEE
Confidence 77888999988877652 2445555666655443
No 216
>PRK09936 hypothetical protein; Provisional
Probab=22.43 E-value=1.8e+02 Score=29.54 Aligned_cols=62 Identities=24% Similarity=0.483 Sum_probs=45.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCC--CC-HHHHHHHHHhcCCe--EEEEec
Q 012852 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFP--SG-IKALADYVHGKGLK--LGIYSD 177 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP--~G-l~~l~~~v~~~G~k--~Glw~~ 177 (455)
-+++.+.......++ ++.|++.+++- |... .++ .|+ +| |..+.+..+++||+ +|||++
T Consensus 33 ~~~~~~qWq~~~~~~-----~~~G~~tLivQ--Wt~y-G~~---------~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 33 SQVTDTQWQGLWSQL-----RLQGFDTLVVQ--WTRY-GDA---------DFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred CCCCHHHHHHHHHHH-----HHcCCcEEEEE--eeec-cCC---------CcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 368889999999988 67888888885 7552 222 233 12 77888888999997 699999
Q ss_pred CCcc
Q 012852 178 AGVF 181 (455)
Q Consensus 178 pg~~ 181 (455)
|...
T Consensus 96 p~y~ 99 (296)
T PRK09936 96 PEFF 99 (296)
T ss_pred hHHH
Confidence 9753
No 217
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=22.07 E-value=8.9e+02 Score=26.01 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-CCeEEEEe
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYS 176 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~-G~k~Glw~ 176 (455)
.++.+.+.+.|+.+ .++|.+.|.|=| .-|-..|. -+..|+..+++. ++.++++.
T Consensus 150 ~~~~~~~~~~a~~l-----~~~Gad~I~i~D--------t~G~l~P~------~v~~lv~alk~~~~~pi~~H~ 204 (448)
T PRK12331 150 VHTIDYFVKLAKEM-----QEMGADSICIKD--------MAGILTPY------VAYELVKRIKEAVTVPLEVHT 204 (448)
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEEcC--------CCCCCCHH------HHHHHHHHHHHhcCCeEEEEe
Confidence 47888888888888 456777777754 33555554 478888888753 67777766
No 218
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=21.81 E-value=2.5e+02 Score=29.16 Aligned_cols=114 Identities=15% Similarity=0.065 Sum_probs=57.5
Q ss_pred hhhhCcCCCHHHHHHHHHHHHH--cCCcccCceEEEecCCcCCCCCCCCCCccc-CCCCCCCCHH-HHHHHH----Hhc-
Q 012852 98 WNFFACNISETIIKETADALVS--TGLAELGYDHVNIDDCWSSPLRDLKGQLVP-DTITFPSGIK-ALADYV----HGK- 168 (455)
Q Consensus 98 W~~~~~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~-d~~~FP~Gl~-~l~~~v----~~~- 168 (455)
.+.+|.+ .++.+.++|+++.+ ..|.++|+.+|+|||.-....-+..++-.. ....-|+.+. -.++.+ ...
T Consensus 154 ~~~~Y~~-~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p 232 (368)
T PRK06520 154 DATVYPD-LDDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKP 232 (368)
T ss_pred chhcCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCC
Confidence 3345543 35666666666554 246779999999999754321111111000 0000122221 112223 222
Q ss_pred -CCeEEEEecCCccccCCCCcccccHHhHHHH-HHhcCCcEEEeecCC
Q 012852 169 -GLKLGIYSDAGVFTCQVRPGSLFHEKDDAPL-FASWGVDYLKYDNCF 214 (455)
Q Consensus 169 -G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~-~~~wGidylK~D~~~ 214 (455)
++.++++++.|.+.- ++-..-+ ++..+.. |.+..+|.+=+++..
T Consensus 233 ~d~~v~~HiC~Gn~~~-~~~~~~~-y~~i~~~L~~~~~vd~~~lE~~~ 278 (368)
T PRK06520 233 ADLTIGLHVCRGNFRS-TWISEGG-YEPVAETLFGGVNVDAFFLEYDN 278 (368)
T ss_pred CCcEEEEEeecCCCCC-ccccccc-hhHHHHHHHhhcCCCeEEEEecc
Confidence 667888877765321 1111112 3445555 678999988888853
No 219
>PRK09505 malS alpha-amylase; Reviewed
Probab=21.80 E-value=2.8e+02 Score=31.53 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=42.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCC------CC-------CCCCCCcccCC----CCCC--CCHHHHHH
Q 012852 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSS------PL-------RDLKGQLVPDT----ITFP--SGIKALAD 163 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~------~~-------rd~~G~~~~d~----~~FP--~Gl~~l~~ 163 (455)
+.=+-..|.+.++.+ +++|++.|.|=--+.. .. -...|.|..|- .+|- ..|+.|++
T Consensus 225 ~GGdl~Gi~~kLdyl-----~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~ 299 (683)
T PRK09505 225 HGGDLRGLTEKLDYL-----QQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVD 299 (683)
T ss_pred cCCCHHHHHHhhHHH-----HHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHH
Confidence 344778888889988 6788888876432211 00 01135555441 2343 14999999
Q ss_pred HHHhcCCeEE
Q 012852 164 YVHGKGLKLG 173 (455)
Q Consensus 164 ~v~~~G~k~G 173 (455)
.+|++||++=
T Consensus 300 ~aH~~Gi~Vi 309 (683)
T PRK09505 300 EAHQRGIRIL 309 (683)
T ss_pred HHHHCCCEEE
Confidence 9999999954
No 220
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.67 E-value=1.4e+02 Score=30.48 Aligned_cols=85 Identities=16% Similarity=0.104 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcC--CeEEEEecCCccc
Q 012852 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKG--LKLGIYSDAGVFT 182 (455)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G--~k~Glw~~pg~~~ 182 (455)
.+.+.|++.++.+ ++.|+..|.|-+|-... . .+ +=+..+++.|++.+ +++-.+...+...
T Consensus 70 ls~eeI~e~~~~~-----~~~G~~~i~l~gG~~p~-------~-----~~-~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~ 131 (343)
T TIGR03551 70 LSLEEIAERAAEA-----WKAGATEVCIQGGIHPD-------L-----DG-DFYLDILRAVKEEVPGMHIHAFSPMEVYY 131 (343)
T ss_pred CCHHHHHHHHHHH-----HHCCCCEEEEEeCCCCC-------C-----CH-HHHHHHHHHHHHHCCCceEEecCHHHHHH
Confidence 6899999999998 45688888887554320 0 11 12688999999874 3332221111110
Q ss_pred cCCCCcccccHHhHHHHHHhcCCcEEE
Q 012852 183 CQVRPGSLFHEKDDAPLFASWGVDYLK 209 (455)
Q Consensus 183 c~~~Pg~~~~~~~~~~~~~~wGidylK 209 (455)
..+..|.. .++.++.|++.|++.+-
T Consensus 132 ~~~~~g~~--~~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 132 GARNSGLS--VEEALKRLKEAGLDSMP 156 (343)
T ss_pred HHHHcCCC--HHHHHHHHHHhCccccc
Confidence 01111211 25678899999999663
No 221
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=21.33 E-value=2.7e+02 Score=28.08 Aligned_cols=85 Identities=21% Similarity=0.193 Sum_probs=52.2
Q ss_pred cccCceEEEecCCcCCCCCCCCCCcccCCCC-----CCCCHHHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHH
Q 012852 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTIT-----FPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDA 197 (455)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~-----FP~Gl~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~ 197 (455)
.+.|.+.++|.|-|... ...+++. .|. ++.+++.+|+ + ..-+++ |.. .....
T Consensus 181 ~eaGad~i~i~d~~a~~-------~~isp~~f~e~~~p~-~k~i~~~i~~-~-~~ilh~------cG~-------~~~~l 237 (326)
T cd03307 181 LEAGADIITIADPTASP-------ELISPEFYEEFALPY-HKKIVKELHG-C-PTILHI------CGN-------TTPIL 237 (326)
T ss_pred HHcCCCEEEecCCCccc-------cccCHHHHHHHHHHH-HHHHHHHHhc-C-CcEEEE------CCC-------ChhHH
Confidence 45799999999989642 1122222 233 7899999987 2 223322 311 13356
Q ss_pred HHHHhcCCcEEEeecCCCCCCCccchhHHHHHHHHhcCCCeeEe
Q 012852 198 PLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (455)
Q Consensus 198 ~~~~~wGidylK~D~~~~~~~~~~~~y~~m~~AL~~~G~~i~~~ 241 (455)
..+++.|+|.+-+|+.. .+.++.+..|.++.+.
T Consensus 238 ~~~~~~g~d~~~~d~~~-----------dl~e~~~~~g~~~~i~ 270 (326)
T cd03307 238 EYIAQCGFDGISVDEKV-----------DVKTAKEIVGGRAALI 270 (326)
T ss_pred HHHHHcCCCeecccccC-----------CHHHHHHHcCCceEEE
Confidence 77888999998888652 2455556677665544
No 222
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=21.06 E-value=78 Score=31.44 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEE
Q 012852 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI 174 (455)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Gl 174 (455)
.-+.+++.|+.+ ++.|-.+|.+...|-. -.|+ ...|-. +-.++..|+++||+.-+
T Consensus 118 k~DeVi~~Ak~A-----K~~GSTRFCmGaAWRD----~~GR----k~~fk~-IlE~ikevr~MgmEvCv 172 (380)
T KOG2900|consen 118 KVDEVIKEAKEA-----KRNGSTRFCMGAAWRD----MKGR----KSAFKR-ILEMIKEVRDMGMEVCV 172 (380)
T ss_pred hHHHHHHHHHHH-----HhcCCceeecchhhhh----hccc----hhHHHH-HHHHHHHHHcCCceeee
Confidence 445666677766 6789999999999954 2333 234544 77788888889988753
No 223
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=21.02 E-value=1.6e+02 Score=28.74 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCeEEEEecCCccccCCCCcccccHHhHHHHHHh-cCCcEEEeec
Q 012852 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS-WGVDYLKYDN 212 (455)
Q Consensus 159 ~~l~~~v~~~G~k~Glw~~pg~~~c~~~Pg~~~~~~~~~~~~~~-wGidylK~D~ 212 (455)
+.+++.+|+.|+++..|+--.. ..++.+.+ +||| |=-|+
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~~--------------~~~~~l~~~~GVd-iiTD~ 257 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNTP--------------TEKQYFAKTLNVP-YITDS 257 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCCH--------------HHHHHHHHHhCCC-eecCC
Confidence 4689999999999999986421 25777888 9999 76665
No 224
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=21.00 E-value=29 Score=36.20 Aligned_cols=142 Identities=17% Similarity=0.164 Sum_probs=75.9
Q ss_pred HHhcCCcEEEeecCCCCCC-CccchhHHHHHHHHhcCCCeeEeeCCCCCCChhhhhhhccCeeeecCCCCCChhHHHHHH
Q 012852 200 FASWGVDYLKYDNCFNLGI-EPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIA 278 (455)
Q Consensus 200 ~~~wGidylK~D~~~~~~~-~~~~~y~~m~~AL~~~G~~i~~~~c~~g~~~p~~w~~~~~~~~Ris~Di~~~W~~~~~~~ 278 (455)
+.+|+..+.++|....+.. -.++.|..|.+++.+.|-. -+.+-||..| |.|..+.+..
T Consensus 37 w~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~-------------------~vGY~yi~iD--DCW~e~~Rd~ 95 (414)
T KOG2366|consen 37 WNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLA-------------------DVGYEYINID--DCWSEVTRDS 95 (414)
T ss_pred cccccceeeecccccCCccchhHHHHHHHHHHHHHhHHH-------------------hcCcEEEech--hhhhhhccCC
Confidence 5789999999998765532 2467788888887655421 1122233333 4444432222
Q ss_pred Hh--hcccccc-cCCC---CcCCCCccccCC-------CCCCHHHHHHHHHHHHHHhCceeecCCCCCCCHHHHHhhccH
Q 012852 279 DI--NDKWASY-AGPG---GWNDPDMLEVGN-------GGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNK 345 (455)
Q Consensus 279 ~~--~~~~~~~-~g~g---~~nDpDmL~vg~-------~~lT~~E~rt~~slwa~~gsPL~is~Dl~~l~~~~~~lL~N~ 345 (455)
+. .+.-..+ +|-. .|.+-++|-+|- .-++..+ +....|..+.++..-+.|..+++.=.-.+++++
T Consensus 96 ~grLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~PG--S~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~ 173 (414)
T KOG2366|consen 96 DGRLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAGYPG--SLGHEESDAKTFADWGVDYLKLDGCFNNLITMP 173 (414)
T ss_pred ccccccChhhcccchhhhhhchhhcCCceeeeeccCchhhccCCc--ccchhhhhhhhhHhhCCcEEecccccccccccc
Confidence 11 0000000 1110 245555555541 0022222 455566666777777788888876666666676
Q ss_pred hHHhhccCCCCCccEEeee
Q 012852 346 EVIAVNQDPLGVQGRKVYV 364 (455)
Q Consensus 346 e~iainQd~lG~~~r~v~~ 364 (455)
+...+..+.|-..+||+..
T Consensus 174 ~~Yp~ms~aLN~tGrpi~y 192 (414)
T KOG2366|consen 174 EGYPIMSRALNNTGRPIFY 192 (414)
T ss_pred ccchhHHHHHhccCCceEE
Confidence 6666555555556666653
No 225
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=20.85 E-value=3.4e+02 Score=31.07 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=63.0
Q ss_pred cCCCHHHHHHHHHHHHHc--CCcccCceEEEecCC---------cC--CCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-
Q 012852 103 CNISETIIKETADALVST--GLAELGYDHVNIDDC---------WS--SPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (455)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~--gl~~~G~~~~~iDDG---------W~--~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~- 168 (455)
..+|+++|.+..+.+++. ..++.|++-|.|-.| .- +.+.|.+|-=.-|..+| +..+++.|++.
T Consensus 539 ~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~~ir~~~ 615 (765)
T PRK08255 539 REMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRY---PLEVFRAVRAVW 615 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHH---HHHHHHHHHHhc
Confidence 358888888887766542 235689999999877 11 11334554333344566 45788888863
Q ss_pred --CCeEEEEecCCccccCCCCcccccH--HhHHHHHHhcCCcEEEee
Q 012852 169 --GLKLGIYSDAGVFTCQVRPGSLFHE--KDDAPLFASWGVDYLKYD 211 (455)
Q Consensus 169 --G~k~Glw~~pg~~~c~~~Pg~~~~~--~~~~~~~~~wGidylK~D 211 (455)
.+.+|+=+.+.... ++..... ...++.+.+.|+|||-+-
T Consensus 616 ~~~~~v~~ri~~~~~~----~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 616 PAEKPMSVRISAHDWV----EGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred CCCCeeEEEEcccccc----CCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 46677766653211 2222222 356678889999999774
No 226
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=20.71 E-value=6.9e+02 Score=27.90 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-CCeEEEEec
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSD 177 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~-G~k~Glw~~ 177 (455)
.+|.+.+.+.++.+ .++|.+.|.|=| ..|-+.|. -+..|+..+++. ++.+|++.-
T Consensus 151 ~~~~~~~~~~a~~l-----~~~Gad~i~i~D--------t~G~l~P~------~~~~lv~~lk~~~~~pi~~H~H 206 (593)
T PRK14040 151 VHTLQTWVDLAKQL-----EDMGVDSLCIKD--------MAGLLKPY------AAYELVSRIKKRVDVPLHLHCH 206 (593)
T ss_pred ccCHHHHHHHHHHH-----HHcCCCEEEECC--------CCCCcCHH------HHHHHHHHHHHhcCCeEEEEEC
Confidence 35677788888877 456777777754 33555554 489999999764 778888773
No 227
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=20.32 E-value=90 Score=37.06 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=33.2
Q ss_pred ccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeEEEEec
Q 012852 124 ELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSD 177 (455)
Q Consensus 124 ~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~Glw~~ 177 (455)
++||+|+.++|-=|.. |++.+. .-|- |+.|.+-.+++|+.||+=+.
T Consensus 258 ~~g~~~~~~~~~~f~~------dl~~~~-~~~~-~~~l~~~~~~~~~~fgvk~~ 303 (1012)
T TIGR03315 258 EMGFDYIVLKEESFSH------DLQYED-AVAM-LQRLQLLAKEKGLGFGVKLT 303 (1012)
T ss_pred hcCCceEecchhhccc------ccchhH-HHHH-HHHHHHHHHHcCCeeeEEEe
Confidence 4799999999866652 455442 2233 67777888899999999875
No 228
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.27 E-value=5.5e+02 Score=24.70 Aligned_cols=110 Identities=19% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhcCCeE-EEEecCCcccc-----
Q 012852 110 IKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKL-GIYSDAGVFTC----- 183 (455)
Q Consensus 110 i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~G~k~-Glw~~pg~~~c----- 183 (455)
+.+.++.+ +++||+.|-| |......-.-++... +++.|.+.+++.|+++ ++........+
T Consensus 15 l~~~l~~~-----~~~G~~~vEl---~~~~~~~~~~~~~~~------~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~ 80 (275)
T PRK09856 15 IEHAFRDA-----SELGYDGIEI---WGGRPHAFAPDLKAG------GIKQIKALAQTYQMPIIGYTPETNGYPYNMMLG 80 (275)
T ss_pred HHHHHHHH-----HHcCCCEEEE---ccCCccccccccCch------HHHHHHHHHHHcCCeEEEecCcccCcCccccCC
Q ss_pred --CCCCcccccHHhHHHHHHhcCCcEEEeecCCCC-CCCccchhHHHHHHHHh
Q 012852 184 --QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNL-GIEPKKRYPPMRDALNE 233 (455)
Q Consensus 184 --~~~Pg~~~~~~~~~~~~~~wGidylK~D~~~~~-~~~~~~~y~~m~~AL~~ 233 (455)
.....+.++++..++.-+..|.+.|-+=....+ .....+.+..+.+.|+.
T Consensus 81 ~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (275)
T PRK09856 81 DEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSE 133 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHH
No 229
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.26 E-value=6.2e+02 Score=22.59 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc---CCeEEEEecCCcccc
Q 012852 107 ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK---GLKLGIYSDAGVFTC 183 (455)
Q Consensus 107 e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~---G~k~Glw~~pg~~~c 183 (455)
.+...+.++.+ +++|.+.+.+-.-+... ++. . ++++......+.+. ++.+-+|..|+..
T Consensus 64 ~~~~~~~a~~a-----~~~Gad~i~v~~~~~~~---------~~~-~-~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-- 125 (201)
T cd00945 64 TEVKVAEVEEA-----IDLGADEIDVVINIGSL---------KEG-D-WEEVLEEIAAVVEAADGGLPLKVILETRGL-- 125 (201)
T ss_pred HHHHHHHHHHH-----HHcCCCEEEEeccHHHH---------hCC-C-HHHHHHHHHHHHHHhcCCceEEEEEECCCC--
Confidence 56667778877 55788888875433210 100 0 12455555555554 8999999988642
Q ss_pred CCCCcccccHHhHHHHHHhcCCcEEEeecC
Q 012852 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (455)
Q Consensus 184 ~~~Pg~~~~~~~~~~~~~~wGidylK~D~~ 213 (455)
...+.+....+.+.+-|+++||.-..
T Consensus 126 ----~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 126 ----KTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred ----CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 11223344455567899999996554
No 230
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=20.11 E-value=9.1e+02 Score=26.18 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEecCCcCCCCCCCCCCcccCCCCCCCCHHHHHHHHHhc-CCeEEEEe
Q 012852 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYS 176 (455)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl~~l~~~v~~~-G~k~Glw~ 176 (455)
.+|.+.+.+.|+.+ .++|.+.|.|=| .-|-..|. -+..|+..+++. ++.+|++.
T Consensus 159 ~~t~~y~~~~a~~l-----~~~Gad~I~IkD--------taG~l~P~------~v~~Lv~alk~~~~~pi~~H~ 213 (468)
T PRK12581 159 VHTLNYYLSLVKEL-----VEMGADSICIKD--------MAGILTPK------AAKELVSGIKAMTNLPLIVHT 213 (468)
T ss_pred cCcHHHHHHHHHHH-----HHcCCCEEEECC--------CCCCcCHH------HHHHHHHHHHhccCCeEEEEe
Confidence 34666667777666 345666666643 23444444 377788887754 45666655
Done!