Query 012853
Match_columns 455
No_of_seqs 271 out of 1196
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:59:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0160 Myosin class V heavy c 97.9 4.7E-05 1E-09 86.3 9.7 69 90-162 670-739 (862)
2 PF00612 IQ: IQ calmodulin-bin 97.8 1.9E-05 4.2E-10 49.8 3.5 21 93-113 1-21 (21)
3 PF13178 DUF4005: Protein of u 97.7 3.5E-05 7.6E-10 66.8 3.7 19 371-389 34-52 (102)
4 KOG0160 Myosin class V heavy c 97.6 0.00027 5.8E-09 80.3 10.1 79 77-158 676-758 (862)
5 smart00015 IQ Short calmodulin 97.3 0.00019 4.2E-09 47.3 2.8 22 92-113 2-23 (26)
6 KOG0520 Uncharacterized conser 97.0 0.001 2.3E-08 76.1 6.3 74 92-165 809-890 (975)
7 PTZ00014 myosin-A; Provisional 96.7 0.0029 6.4E-08 72.3 7.3 41 94-134 778-819 (821)
8 KOG0164 Myosin class I heavy c 96.4 0.014 2.9E-07 65.4 9.2 63 90-162 693-755 (1001)
9 COG5022 Myosin heavy chain [Cy 95.7 0.1 2.2E-06 62.4 12.7 69 90-159 742-811 (1463)
10 PF00612 IQ: IQ calmodulin-bin 95.4 0.02 4.3E-07 36.0 3.2 19 116-134 2-20 (21)
11 PTZ00014 myosin-A; Provisional 94.0 0.14 3E-06 58.9 7.8 40 117-159 779-818 (821)
12 KOG2128 Ras GTPase-activating 94.0 0.15 3.2E-06 60.8 7.8 70 92-161 564-642 (1401)
13 smart00015 IQ Short calmodulin 92.9 0.12 2.7E-06 33.9 2.9 19 116-134 4-22 (26)
14 KOG0520 Uncharacterized conser 88.9 0.84 1.8E-05 53.2 6.6 67 93-159 833-932 (975)
15 COG5022 Myosin heavy chain [Cy 88.3 5.8 0.00013 48.2 12.9 85 70-157 741-833 (1463)
16 KOG4427 E3 ubiquitin protein l 84.3 1.4 2.9E-05 50.4 4.9 26 88-113 25-50 (1096)
17 KOG0377 Protein serine/threoni 82.9 2.1 4.6E-05 46.4 5.4 35 90-124 14-48 (631)
18 KOG0942 E3 ubiquitin protein l 78.3 1.9 4.1E-05 50.0 3.5 27 88-114 24-50 (1001)
19 KOG0161 Myosin class II heavy 78.3 5.7 0.00012 49.9 7.7 41 117-157 775-815 (1930)
20 KOG2128 Ras GTPase-activating 77.6 5.6 0.00012 48.1 7.1 64 97-163 539-614 (1401)
21 KOG0162 Myosin class I heavy c 74.2 5 0.00011 46.0 5.3 43 88-134 688-735 (1106)
22 KOG0163 Myosin class VI heavy 73.5 63 0.0014 37.8 13.5 33 92-124 812-845 (1259)
23 KOG0164 Myosin class I heavy c 73.0 23 0.00051 40.8 10.0 78 117-202 698-775 (1001)
24 KOG0161 Myosin class II heavy 66.2 26 0.00057 44.4 9.5 42 91-132 771-816 (1930)
25 PF08763 Ca_chan_IQ: Voltage g 47.7 22 0.00048 25.8 2.8 20 93-112 9-28 (35)
26 KOG4427 E3 ubiquitin protein l 39.4 97 0.0021 36.3 7.6 22 115-136 30-51 (1096)
27 KOG0377 Protein serine/threoni 35.8 70 0.0015 35.3 5.6 26 109-134 11-36 (631)
28 PF15157 IQ-like: IQ-like 32.2 42 0.0009 29.1 2.6 20 93-112 47-66 (97)
29 KOG0942 E3 ubiquitin protein l 32.1 71 0.0015 37.8 5.2 24 113-136 27-50 (1001)
30 KOG0163 Myosin class VI heavy 27.5 1.5E+02 0.0032 35.0 6.6 21 116-136 814-834 (1259)
31 KOG0165 Microtubule-associated 22.8 1.5E+02 0.0032 34.9 5.5 23 92-114 942-964 (1023)
32 PF06409 NPIP: Nuclear pore co 22.2 8.5E+02 0.019 24.9 10.6 115 95-216 60-177 (265)
No 1
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.88 E-value=4.7e-05 Score=86.26 Aligned_cols=69 Identities=29% Similarity=0.348 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 012853 90 VRQEWAAIRIQTAFRGFLARRALRALK-GVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEG 162 (455)
Q Consensus 90 ~ree~AAI~IQsafRgylARR~~raLk-giVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~~g 162 (455)
.....+++.||+.||+|++|+.|..++ +++.||+++||++.|+. .+ ...|++.||..+|++..|+.+..
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~~y~~ 739 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRRRYRA 739 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 345678888999999999999996555 99999999999999982 23 66788888888888888877654
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.85 E-value=1.9e-05 Score=49.77 Aligned_cols=21 Identities=48% Similarity=0.718 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 012853 93 EWAAIRIQTAFRGFLARRALR 113 (455)
Q Consensus 93 e~AAI~IQsafRgylARR~~r 113 (455)
+.|||+||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999884
No 3
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=97.68 E-value=3.5e-05 Score=66.79 Aligned_cols=19 Identities=53% Similarity=0.670 Sum_probs=17.9
Q ss_pred CCCcccchhhhHHhhhhcC
Q 012853 371 RPNYMNLTESTKAKQRINQ 389 (455)
Q Consensus 371 ~PsYM~lT~S~kAK~r~~~ 389 (455)
.|+||+.|||+|||+|.++
T Consensus 34 ~PsYMa~TeSakAK~RsqS 52 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQS 52 (102)
T ss_pred CCCccchhhhhhhhhhccC
Confidence 8999999999999999874
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.60 E-value=0.00027 Score=80.32 Aligned_cols=79 Identities=24% Similarity=0.280 Sum_probs=67.7
Q ss_pred hHHhhCCchhH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 012853 77 ATVVRAPPKDF----RAVRQEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVR 152 (455)
Q Consensus 77 ~~v~~~~~~~~----e~~ree~AAI~IQsafRgylARR~~raLkgiVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vR 152 (455)
++++|+.++.+ .+++...+++.||+.+||+++|+......+.|.||..+|+++.|+++ .....+++.||+.+|
T Consensus 676 ~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r 752 (862)
T KOG0160|consen 676 KVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVR 752 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45688888776 34567899999999999999998444445999999999999999999 667789999999999
Q ss_pred HHHHHH
Q 012853 153 ARRVRM 158 (455)
Q Consensus 153 g~raR~ 158 (455)
+..+|.
T Consensus 753 ~~~~r~ 758 (862)
T KOG0160|consen 753 AMLARN 758 (862)
T ss_pred HHHhcc
Confidence 999997
No 5
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.32 E-value=0.00019 Score=47.30 Aligned_cols=22 Identities=50% Similarity=0.738 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 012853 92 QEWAAIRIQTAFRGFLARRALR 113 (455)
Q Consensus 92 ee~AAI~IQsafRgylARR~~r 113 (455)
++.+|++||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4789999999999999999984
No 6
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.00 E-value=0.001 Score=76.13 Aligned_cols=74 Identities=32% Similarity=0.385 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHhhhhh
Q 012853 92 QEWAAIRIQTAFRGFLARRALRALK-GVVRLQALVRGRQVRKQAAVT-------LRCMQALVRVQARVRARRVRMSIEGQ 163 (455)
Q Consensus 92 ee~AAI~IQsafRgylARR~~raLk-giVrLQAlvRG~lvRrq~~~t-------lr~~~AaVrIQa~vRg~raR~~~~g~ 163 (455)
-..||..||..||||+.|+.|..++ -+|+||+.+||+.+|++|... .+-.-++-++|+.+|++..|...+.+
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 3578999999999999999997776 999999999999999999632 12466778899999999998887765
Q ss_pred hH
Q 012853 164 AV 165 (455)
Q Consensus 164 ~~ 165 (455)
..
T Consensus 889 ~~ 890 (975)
T KOG0520|consen 889 ET 890 (975)
T ss_pred cc
Confidence 43
No 7
>PTZ00014 myosin-A; Provisional
Probab=96.75 E-value=0.0029 Score=72.25 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 012853 94 WAAIRIQTAFRGFLARRALRALK-GVVRLQALVRGRQVRKQA 134 (455)
Q Consensus 94 ~AAI~IQsafRgylARR~~raLk-giVrLQAlvRG~lvRrq~ 134 (455)
..++.||++||||++|+.|..++ ++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47889999999999999996654 899999999999888753
No 8
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.40 E-value=0.014 Score=65.43 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 012853 90 VRQEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEG 162 (455)
Q Consensus 90 ~ree~AAI~IQsafRgylARR~~raLkgiVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~~g 162 (455)
.+.-.-|+.||++||||++|..|+.++++..|-.++|.+.++- .+-.||.++|+++.++.+..
T Consensus 693 ~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~wyR~~K~ks----------~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 693 ERLPSLVTLLQKAWRGWLARQRYRRMKASATIIRWYRRYKLKS----------YVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhhccccCC
Confidence 3445679999999999999999999985555444888554432 34578999999988776543
No 9
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=95.72 E-value=0.1 Score=62.35 Aligned_cols=69 Identities=25% Similarity=0.304 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 012853 90 VRQEWAAIRIQTAFRGFLARRAL-RALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMS 159 (455)
Q Consensus 90 ~ree~AAI~IQsafRgylARR~~-raLkgiVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~ 159 (455)
......|++||++|||++.|++| ++++.+..+|...+|..+|+.+ ..-....+.+++|..+|...-|..
T Consensus 742 ~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~r~~ 811 (1463)
T COG5022 742 AKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLV-DYELKWRLFIKLQPLLSLLGSRKE 811 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc-ccchHHHhHHHhhHHhHHHhhHHH
Confidence 45678999999999999999999 6677888888888888888655 333345567777777776655543
No 10
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.42 E-value=0.02 Score=35.98 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012853 116 KGVVRLQALVRGRQVRKQA 134 (455)
Q Consensus 116 kgiVrLQAlvRG~lvRrq~ 134 (455)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3677777777777777765
No 11
>PTZ00014 myosin-A; Provisional
Probab=94.04 E-value=0.14 Score=58.92 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 012853 117 GVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMS 159 (455)
Q Consensus 117 giVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~ 159 (455)
.++.||+++||++.|+.+ ++..+++++||+.+|++.+++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999998 5668899999999999998754
No 12
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=93.97 E-value=0.15 Score=60.83 Aligned_cols=70 Identities=31% Similarity=0.433 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHhhh
Q 012853 92 QEWAAIRIQTAFRGFLA---RRAL--RALKGVVRLQALVRGRQVRKQAAVTL----RCMQALVRVQARVRARRVRMSIE 161 (455)
Q Consensus 92 ee~AAI~IQsafRgylA---RR~~--raLkgiVrLQAlvRG~lvRrq~~~tl----r~~~AaVrIQa~vRg~raR~~~~ 161 (455)
+....+-||..||||+. +..| ...+.+|.+|++.||+++|+.+...+ .+|...+.||+.+|.+..|..+.
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~ 642 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYK 642 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHH
Confidence 67788999999999995 2222 33469999999999999999886433 47999999999999999887765
No 13
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=92.87 E-value=0.12 Score=33.91 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012853 116 KGVVRLQALVRGRQVRKQA 134 (455)
Q Consensus 116 kgiVrLQAlvRG~lvRrq~ 134 (455)
++++.||+.+||+++|+.+
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4677888888888888776
No 14
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=88.88 E-value=0.84 Score=53.22 Aligned_cols=67 Identities=27% Similarity=0.342 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH-------H----HHHHHHHHHHHHHHHHHH----------------------HHHHH
Q 012853 93 EWAAIRIQTAFRGFLARRALRAL-------K----GVVRLQALVRGRQVRKQA----------------------AVTLR 139 (455)
Q Consensus 93 e~AAI~IQsafRgylARR~~raL-------k----giVrLQAlvRG~lvRrq~----------------------~~tlr 139 (455)
..-+|+||+++|||..|+.|+.+ + ..-++|.-+||+..|+.+ ....+
T Consensus 833 r~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r 912 (975)
T KOG0520|consen 833 RQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEER 912 (975)
T ss_pred CCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHH
Confidence 35578888888888888888543 1 333557777777665432 12344
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q 012853 140 CMQALVRVQARVRARRVRMS 159 (455)
Q Consensus 140 ~~~AaVrIQa~vRg~raR~~ 159 (455)
..+|+++||+.+|.+.++..
T Consensus 913 ~~~A~~~VQsm~rs~~a~qq 932 (975)
T KOG0520|consen 913 LTRAVVRVQSMFRSPKAQQQ 932 (975)
T ss_pred HHHHHHHHHHHhcCHHHHHH
Confidence 57899999999999988843
No 15
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=88.26 E-value=5.8 Score=48.25 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=53.0
Q ss_pred hhhhhhhhHHhhCCchhHHHHHHHHHHHHHHHHHh----hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012853 70 DAFSAAMATVVRAPPKDFRAVRQEWAAIRIQTAFR----GFLARRAL---RALKGVVRLQALVRGRQVRKQAAVTLRCMQ 142 (455)
Q Consensus 70 ~~~~~~~~~v~~~~~~~~e~~ree~AAI~IQsafR----gylARR~~---raLkgiVrLQAlvRG~lvRrq~~~tlr~~~ 142 (455)
+++-..+++.+|+..|++=..|+..++.++|..++ |++.|+.+ .-++..++||.+++...-|+.+ .....
T Consensus 741 d~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~---~~~~~ 817 (1463)
T COG5022 741 DAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEY---RSYLA 817 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHH---HHHHH
Confidence 44555667788998886645555566665555554 77777666 2235888888888888888877 33444
Q ss_pred HHHHHH-HHHHHHHHH
Q 012853 143 ALVRVQ-ARVRARRVR 157 (455)
Q Consensus 143 AaVrIQ-a~vRg~raR 157 (455)
.++.+| ...+...++
T Consensus 818 ~i~~lq~~i~~~~~~~ 833 (1463)
T COG5022 818 CIIKLQKTIKREKKLR 833 (1463)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 455566 333333333
No 16
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.31 E-value=1.4 Score=50.44 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 012853 88 RAVRQEWAAIRIQTAFRGFLARRALR 113 (455)
Q Consensus 88 e~~ree~AAI~IQsafRgylARR~~r 113 (455)
-..|.+.||+.||.+||||++|+.|+
T Consensus 25 ~qrrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 25 YQRRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999984
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=82.85 E-value=2.1 Score=46.41 Aligned_cols=35 Identities=34% Similarity=0.232 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 012853 90 VRQEWAAIRIQTAFRGFLARRALRALKGVVRLQAL 124 (455)
Q Consensus 90 ~ree~AAI~IQsafRgylARR~~raLkgiVrLQAl 124 (455)
.|...||+.||++||+|.||...+..-....+|++
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 34578999999999999999988776666677775
No 18
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.35 E-value=1.9 Score=50.03 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 012853 88 RAVRQEWAAIRIQTAFRGFLARRALRA 114 (455)
Q Consensus 88 e~~ree~AAI~IQsafRgylARR~~ra 114 (455)
|..++|.+||+||+.||||++|+..+.
T Consensus 24 e~rk~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 24 EERKQEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 556789999999999999999998744
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=78.28 E-value=5.7 Score=49.89 Aligned_cols=41 Identities=27% Similarity=0.282 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 012853 117 GVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVR 157 (455)
Q Consensus 117 giVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR 157 (455)
-|+.+||.|||+++|+.+......+.|+..||.-+|.|...
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~l 815 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKL 815 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555544444455555555555555433
No 20
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=77.63 E-value=5.6 Score=48.11 Aligned_cols=64 Identities=31% Similarity=0.348 Sum_probs=49.7
Q ss_pred HHHHHHHhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHhhhhh
Q 012853 97 IRIQTAFRGFLARRALRAL--------KGVVRLQALVRGRQVRKQAAVT----LRCMQALVRVQARVRARRVRMSIEGQ 163 (455)
Q Consensus 97 I~IQsafRgylARR~~raL--------kgiVrLQAlvRG~lvRrq~~~t----lr~~~AaVrIQa~vRg~raR~~~~g~ 163 (455)
.+||+..|||..|-.+++. ..++.+|+++||+++ +... .....-++.+|+..|+...|..+...
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~ 614 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRK 614 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 4559999999999998664 277889999999985 2211 22456789999999999999886653
No 21
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=74.22 E-value=5 Score=46.01 Aligned_cols=43 Identities=33% Similarity=0.522 Sum_probs=30.1
Q ss_pred HHHHH---HHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 012853 88 RAVRQ---EWAAIRIQTAFRGFLARRALRALK--GVVRLQALVRGRQVRKQA 134 (455)
Q Consensus 88 e~~re---e~AAI~IQsafRgylARR~~raLk--giVrLQAlvRG~lvRrq~ 134 (455)
|.+|+ ..-|.+||++||.|++||.|..++ +.-.| -|...||++
T Consensus 688 EemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ll----~gKKeRRr~ 735 (1106)
T KOG0162|consen 688 EEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATKLL----LGKKERRRY 735 (1106)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cchHHHHHH
Confidence 44544 467999999999999999997776 43333 344555544
No 22
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=73.50 E-value=63 Score=37.76 Aligned_cols=33 Identities=30% Similarity=0.570 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHH
Q 012853 92 QEWAAIRIQTAFRGFLARRALR-ALKGVVRLQAL 124 (455)
Q Consensus 92 ee~AAI~IQsafRgylARR~~r-aLkgiVrLQAl 124 (455)
...+.+++|+..||||+|++++ .+.++.++-++
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l 845 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINAL 845 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 4577899999999999999983 34455555443
No 23
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=73.05 E-value=23 Score=40.79 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHHHhhhhhcccCCCCCcHHHH
Q 012853 117 GVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQDMMDKRRSQADILKEAEEGWCDSKGTLEDV 196 (455)
Q Consensus 117 giVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~~g~~~q~~~~~~r~~~~~~~~~e~gW~ds~~s~eev 196 (455)
-+..||..+||.++|..+ .+...+++.|+ .+|.+.++-.. +.+++.+..-+...+..+. ..|--.+.-..++
T Consensus 698 lvtllQK~~RG~~~R~ry---~rmka~~~ii~-wyR~~K~ks~v--~el~~~~rg~k~~r~ygk~--~~WP~pP~~Lr~~ 769 (1001)
T KOG0164|consen 698 LVTLLQKAWRGWLARQRY---RRMKASATIIR-WYRRYKLKSYV--QELQRRFRGAKQMRDYGKS--IRWPAPPLVLREF 769 (1001)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHhhhhccccCCC--CCCCCCchHHHHH
Confidence 456789999999999998 44455556666 88877665432 2334444333322232222 3587777766666
Q ss_pred HHHHhh
Q 012853 197 KTKIQM 202 (455)
Q Consensus 197 ~aklq~ 202 (455)
.+.++.
T Consensus 770 ~~~L~~ 775 (1001)
T KOG0164|consen 770 EELLRE 775 (1001)
T ss_pred HHHHHH
Confidence 665554
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=66.24 E-value=26 Score=44.38 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 012853 91 RQEWAAIRIQTAFRGFLARRALRAL----KGVVRLQALVRGRQVRK 132 (455)
Q Consensus 91 ree~AAI~IQsafRgylARR~~raL----kgiVrLQAlvRG~lvRr 132 (455)
....-.+.+|+.+|||++|+.|... -++..||.-+|-++..+
T Consensus 771 ~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 771 KLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456678899999999999999443 39999999998886655
No 25
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=47.69 E-value=22 Score=25.78 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 012853 93 EWAAIRIQTAFRGFLARRAL 112 (455)
Q Consensus 93 e~AAI~IQsafRgylARR~~ 112 (455)
.-||..||-+||.|.+|+.-
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999998864
No 26
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.42 E-value=97 Score=36.28 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012853 115 LKGVVRLQALVRGRQVRKQAAV 136 (455)
Q Consensus 115 LkgiVrLQAlvRG~lvRrq~~~ 136 (455)
..+.+.||+.+|||++|+++..
T Consensus 30 ~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 30 EAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999853
No 27
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=35.81 E-value=70 Score=35.28 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012853 109 RRALRALKGVVRLQALVRGRQVRKQA 134 (455)
Q Consensus 109 RR~~raLkgiVrLQAlvRG~lvRrq~ 134 (455)
++.-+++|+++.||.++|++.+|..+
T Consensus 11 ~~s~raikaAilIQkWYRr~~ARle~ 36 (631)
T KOG0377|consen 11 KKSTRAIKAAILIQKWYRRYEARLEA 36 (631)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446689999999999999999876
No 28
>PF15157 IQ-like: IQ-like
Probab=32.22 E-value=42 Score=29.12 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 012853 93 EWAAIRIQTAFRGFLARRAL 112 (455)
Q Consensus 93 e~AAI~IQsafRgylARR~~ 112 (455)
+.-+.+||.+||-|++|...
T Consensus 47 eskvkiiqrawre~lq~qd~ 66 (97)
T PF15157_consen 47 ESKVKIIQRAWREYLQRQDP 66 (97)
T ss_pred hHHHHHHHHHHHHHHHhcCC
Confidence 56678899999999999875
No 29
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.07 E-value=71 Score=37.80 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012853 113 RALKGVVRLQALVRGRQVRKQAAV 136 (455)
Q Consensus 113 raLkgiVrLQAlvRG~lvRrq~~~ 136 (455)
++.++.|.+|+++||+.+|++...
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHHH
Confidence 344699999999999999998743
No 30
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=27.46 E-value=1.5e+02 Score=34.95 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012853 116 KGVVRLQALVRGRQVRKQAAV 136 (455)
Q Consensus 116 kgiVrLQAlvRG~lvRrq~~~ 136 (455)
..++++|+++||+++|+++..
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~~~ 834 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRHRP 834 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhch
Confidence 378899999999999998853
No 31
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=22.79 E-value=1.5e+02 Score=34.86 Aligned_cols=23 Identities=43% Similarity=0.689 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 012853 92 QEWAAIRIQTAFRGFLARRALRA 114 (455)
Q Consensus 92 ee~AAI~IQsafRgylARR~~ra 114 (455)
...||+.||.+.|||.+|+.|+.
T Consensus 942 kKkaavviqkmirgfiarrkfqm 964 (1023)
T KOG0165|consen 942 KKKAAVVIQKMIRGFIARRKFQM 964 (1023)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999998853
No 32
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=22.23 E-value=8.5e+02 Score=24.89 Aligned_cols=115 Identities=23% Similarity=0.214 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHH
Q 012853 95 AAIRIQTAFRGFLARRALRALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQ---AVQDMMDK 171 (455)
Q Consensus 95 AAI~IQsafRgylARR~~raLkgiVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~~g~---~~q~~~~~ 171 (455)
+--.=|.|||....|..-. -.++-.+=.++|-+.++.++ .++.|.--.+|-.+..-+-.|+..... ..++.++
T Consensus 60 s~DvQ~ra~rsnr~~q~g~-Kigled~~t~~r~~eakvra--ei~~mkVt~kvn~h~kI~g~rKtA~~~~rKl~~ke~E- 135 (265)
T PF06409_consen 60 STDVQQRAWRSNRRRQEGI-KIGLEDLFTLWRHMEAKVRA--EIRKMKVTTKVNSHYKINGKRKTAKKHLRKLSMKECE- 135 (265)
T ss_pred chHHHHHHHHccccccccc-cccHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHhhHHHhhHHHHHHHHHHHHH-
Confidence 3344567787754444331 12444444455555554443 234444333444443333333332221 1122222
Q ss_pred hhhHHHHhhhhhcccCCCCCcHHHHHHHHhhhhhhHHHHHHhhhh
Q 012853 172 RRSQADILKEAEEGWCDSKGTLEDVKTKIQMRQEGAFKRERAIAY 216 (455)
Q Consensus 172 ~r~~~~~~~~~e~gW~ds~~s~eev~aklq~RqEAA~KRERAlAY 216 (455)
+..++..+.++|| ...+-++||..-.++=||+..-|.||-.|
T Consensus 136 ~~EKErqlSeAeE---n~kl~mkei~tY~~~fQ~~Qel~~RaEdy 177 (265)
T PF06409_consen 136 HAEKERQLSEAEE---NGKLAMKEIHTYKQMFQRMQELQQRAEDY 177 (265)
T ss_pred HHHHHhhhhhhhh---ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222333443 35788999998888878877777777665
Done!