Query 012853
Match_columns 455
No_of_seqs 271 out of 1196
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 17:30:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.2 5.4E-11 1.8E-15 90.8 8.1 54 91-145 3-57 (58)
2 2dfs_A Myosin-5A; myosin-V, in 99.0 9E-10 3.1E-14 125.7 10.0 71 90-161 813-884 (1080)
3 2dfs_A Myosin-5A; myosin-V, in 98.9 3.8E-09 1.3E-13 120.6 12.1 70 92-162 767-837 (1080)
4 1n2d_C IQ2 and IQ3 motifs from 98.8 8.6E-09 2.9E-13 75.6 6.8 42 93-134 3-47 (48)
5 1n2d_C IQ2 and IQ3 motifs from 98.5 3.2E-07 1.1E-11 67.1 7.4 44 116-160 4-47 (48)
6 2ix7_C Myosin-5A; contractIle 98.1 1.2E-05 4E-10 61.1 8.2 44 116-162 6-49 (58)
7 2l53_B CAM, voltage-gated sodi 97.5 5E-05 1.7E-09 51.9 3.1 22 91-112 4-25 (31)
8 1wdc_A Scallop myosin; calcium 97.5 0.00026 8.8E-09 54.8 7.1 40 93-132 6-49 (64)
9 2kxw_B Sodium channel protein 97.5 6E-05 2.1E-09 50.0 2.6 21 91-111 4-24 (27)
10 2bl0_A Major plasmodial myosin 97.4 0.00021 7.2E-09 55.2 5.9 42 118-159 7-48 (63)
11 1wdc_A Scallop myosin; calcium 97.4 0.00038 1.3E-08 53.8 6.9 46 116-161 7-52 (64)
12 2bl0_A Major plasmodial myosin 97.4 0.00033 1.1E-08 54.1 6.1 43 92-134 3-49 (63)
13 1kk8_A Myosin heavy chain, str 97.1 0.00067 2.3E-08 76.0 7.7 44 91-134 777-824 (837)
14 1kk8_A Myosin heavy chain, str 96.3 0.0086 2.9E-07 67.1 8.9 47 116-162 780-826 (837)
15 1i84_S Smooth muscle myosin he 96.1 0.0057 2E-07 70.5 6.7 42 92-133 791-836 (1184)
16 3gn4_A Myosin-VI; unconvention 95.3 0.02 6.8E-07 51.9 5.4 34 92-125 44-78 (148)
17 1i84_S Smooth muscle myosin he 95.0 0.057 1.9E-06 62.3 9.5 45 116-160 793-837 (1184)
18 4dck_A Sodium channel protein 91.0 0.21 7.2E-06 46.0 4.6 27 88-114 125-151 (168)
19 4anj_A Unconventional myosin-V 90.0 0.53 1.8E-05 54.0 7.9 41 92-133 774-815 (1052)
20 1w7j_A Myosin VA; motor protei 90.0 0.23 7.8E-06 55.4 4.7 25 92-116 767-791 (795)
21 3gn4_A Myosin-VI; unconvention 79.5 4.1 0.00014 36.8 6.8 24 116-139 46-69 (148)
22 2l53_B CAM, voltage-gated sodi 73.5 3.4 0.00012 28.1 3.5 20 140-159 5-24 (31)
23 4anj_A Unconventional myosin-V 72.7 5.2 0.00018 46.0 6.9 44 115-161 774-817 (1052)
24 2kxw_B Sodium channel protein 70.2 3.6 0.00012 27.1 2.9 20 140-159 5-24 (27)
25 1w7j_A Myosin VA; motor protei 48.1 18 0.00062 40.4 5.4 19 142-160 769-787 (795)
26 2ycu_A Non muscle myosin 2C, a 39.5 7.7 0.00026 44.3 0.8 36 98-133 769-805 (995)
27 3dvk_B Voltage-dependent R-typ 36.4 15 0.0005 23.5 1.3 18 93-110 6-23 (23)
28 2f3y_B Voltage-dependent L-typ 36.3 22 0.00076 23.2 2.2 18 95-112 4-21 (26)
29 2be6_D Voltage-dependent L-typ 32.3 34 0.0012 24.0 2.8 20 93-112 11-30 (37)
30 4dck_A Sodium channel protein 24.2 78 0.0027 28.9 4.6 24 139-162 128-151 (168)
31 3bxl_B CAM, voltage-dependent 23.9 54 0.0018 21.4 2.4 18 94-111 3-20 (26)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.19 E-value=5.4e-11 Score=90.84 Aligned_cols=54 Identities=35% Similarity=0.466 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012853 91 RQEWAAIRIQTAFRGFLARRALRALK-GVVRLQALVRGRQVRKQAAVTLRCMQALV 145 (455)
Q Consensus 91 ree~AAI~IQsafRgylARR~~raLk-giVrLQAlvRG~lvRrq~~~tlr~~~AaV 145 (455)
+.+.|||+||++||||++|+.|..++ ++|.||+++||+++|+.+ ..++...|++
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~~r~~~aA~ 57 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYA-KFLRRTKAAT 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCcc
Confidence 46789999999999999999998887 999999999999999998 5566666654
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.98 E-value=9e-10 Score=125.68 Aligned_cols=71 Identities=28% Similarity=0.384 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 012853 90 VRQEWAAIRIQTAFRGFLARRALRALK-GVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIE 161 (455)
Q Consensus 90 ~ree~AAI~IQsafRgylARR~~raLk-giVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~~ 161 (455)
+++..||++||++||||++|+.|..++ +++.||+++||+++|+++ ..++...|++.||+.||++.+|+.+.
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~-~~lr~~~aav~IQ~~~Rg~l~R~~y~ 884 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKY-QMMLREHKSIIIQKHVRGWLARVHYH 884 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTTHHHHHTT
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665554 666777777777777666 33444556666666666666665543
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.91 E-value=3.8e-09 Score=120.59 Aligned_cols=70 Identities=33% Similarity=0.412 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 012853 92 QEWAAIRIQTAFRGFLARRALRALK-GVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEG 162 (455)
Q Consensus 92 ee~AAI~IQsafRgylARR~~raLk-giVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~~g 162 (455)
...||++||++||||++|+.|..++ +++.||+++||+++|+++ ..++...|+++||+.||+|.+|+.+..
T Consensus 767 l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~y~~ 837 (1080)
T 2dfs_A 767 LRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRYQC 837 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHHHHH
Confidence 4689999999999999999997776 999999999999999998 567889999999999999999988764
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.81 E-value=8.6e-09 Score=75.59 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 012853 93 EWAAIRIQTAFRGFLARRALRALK---GVVRLQALVRGRQVRKQA 134 (455)
Q Consensus 93 e~AAI~IQsafRgylARR~~raLk---giVrLQAlvRG~lvRrq~ 134 (455)
..|||.||+.||||++|+.|..++ +++.||+++||+++|+.+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 458899999999999999986553 788888888888888765
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.50 E-value=3.2e-07 Score=67.12 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 012853 116 KGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSI 160 (455)
Q Consensus 116 kgiVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~ 160 (455)
+++|.||+.+||+++|+.+ ..++...|+++||+.|||+.+|+.+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 4899999999999999999 5577778999999999999999754
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.10 E-value=1.2e-05 Score=61.07 Aligned_cols=44 Identities=30% Similarity=0.354 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 012853 116 KGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEG 162 (455)
Q Consensus 116 kgiVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~~g 162 (455)
.+++.||+.+||+++|+.| +....+++.||+.+||+.+|+.+..
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~---~~~r~aai~IQ~~~Rg~~aR~~~~~ 49 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRY---LCMQRAAITVQRYVRGYQARCYAKF 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999 5556799999999999999987654
No 7
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.54 E-value=5e-05 Score=51.90 Aligned_cols=22 Identities=45% Similarity=0.608 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 012853 91 RQEWAAIRIQTAFRGFLARRAL 112 (455)
Q Consensus 91 ree~AAI~IQsafRgylARR~~ 112 (455)
+||.||++||.+||+|+.|+.+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999875
No 8
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.50 E-value=0.00026 Score=54.81 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 012853 93 EWAAIRIQTAFRGFLARRALRAL----KGVVRLQALVRGRQVRK 132 (455)
Q Consensus 93 e~AAI~IQsafRgylARR~~raL----kgiVrLQAlvRG~lvRr 132 (455)
...++.||+++|||++|+.|..+ .++..||..+|+++.++
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556666666666666666443 14445555555555544
No 9
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.46 E-value=6e-05 Score=50.01 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 012853 91 RQEWAAIRIQTAFRGFLARRA 111 (455)
Q Consensus 91 ree~AAI~IQsafRgylARR~ 111 (455)
+||.||++||.+||+|+.++.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999864
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.44 E-value=0.00021 Score=55.22 Aligned_cols=42 Identities=24% Similarity=0.094 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 012853 118 VVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMS 159 (455)
Q Consensus 118 iVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~ 159 (455)
++.||+.+||+++|+.+...+....|+..||..+|++..++.
T Consensus 7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444444443333334444455555555554443
No 11
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.40 E-value=0.00038 Score=53.83 Aligned_cols=46 Identities=24% Similarity=0.172 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 012853 116 KGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIE 161 (455)
Q Consensus 116 kgiVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~~ 161 (455)
..++.||+.+||+++|+.+...+....|+..||..+|++..++...
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 3788999999999999999777777888889999999999887654
No 12
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.36 E-value=0.00033 Score=54.15 Aligned_cols=43 Identities=21% Similarity=0.157 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 012853 92 QEWAAIRIQTAFRGFLARRALRAL----KGVVRLQALVRGRQVRKQA 134 (455)
Q Consensus 92 ee~AAI~IQsafRgylARR~~raL----kgiVrLQAlvRG~lvRrq~ 134 (455)
....++.||+++|||++|+.|..+ .++..||..+|+++.++..
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 356789999999999999999665 3888999999999987743
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.11 E-value=0.00067 Score=75.96 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 012853 91 RQEWAAIRIQTAFRGFLARRALRAL----KGVVRLQALVRGRQVRKQA 134 (455)
Q Consensus 91 ree~AAI~IQsafRgylARR~~raL----kgiVrLQAlvRG~lvRrq~ 134 (455)
+...+|++||++||||++|+.|+.+ .+++.||..+||+++||..
T Consensus 777 ~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 777 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 3456788899999999999988665 3777778888887777654
No 14
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.28 E-value=0.0086 Score=67.09 Aligned_cols=47 Identities=23% Similarity=0.140 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 012853 116 KGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEG 162 (455)
Q Consensus 116 kgiVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~~g 162 (455)
+.++.||+.+||+++|+++...+....|++.||+.||++.+|+.+.-
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w 826 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQW 826 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHH
Confidence 37889999999999999996555567899999999999999987543
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.13 E-value=0.0057 Score=70.47 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 012853 92 QEWAAIRIQTAFRGFLARRALRAL----KGVVRLQALVRGRQVRKQ 133 (455)
Q Consensus 92 ee~AAI~IQsafRgylARR~~raL----kgiVrLQAlvRG~lvRrq 133 (455)
...+|+.||++||||++|+.|..+ .+++.||..+||++.|+.
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 347899999999999999999665 399999999999999875
No 16
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.31 E-value=0.02 Score=51.89 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHH
Q 012853 92 QEWAAIRIQTAFRGFLARRALRA-LKGVVRLQALV 125 (455)
Q Consensus 92 ee~AAI~IQsafRgylARR~~ra-LkgiVrLQAlv 125 (455)
...|+|+||+++||||+|+.++- +.|+.++.++.
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677777777777777777733 35666665554
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.03 E-value=0.057 Score=62.30 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 012853 116 KGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSI 160 (455)
Q Consensus 116 kgiVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~ 160 (455)
..++.||+.+||+++|+.+...+....|++.||+.||+|..++.+
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 378899999999999999966555678999999999999998764
No 18
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=90.96 E-value=0.21 Score=46.01 Aligned_cols=27 Identities=41% Similarity=0.559 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 012853 88 RAVRQEWAAIRIQTAFRGFLARRALRA 114 (455)
Q Consensus 88 e~~ree~AAI~IQsafRgylARR~~ra 114 (455)
...+++.||++||.+||.|+.|+.++.
T Consensus 125 ~~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 125 RRKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 456789999999999999998887754
No 19
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=90.01 E-value=0.53 Score=54.05 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 012853 92 QEWAAIRIQTAFRGFLARRALRALK-GVVRLQALVRGRQVRKQ 133 (455)
Q Consensus 92 ee~AAI~IQsafRgylARR~~raLk-giVrLQAlvRG~lvRrq 133 (455)
...+|+.||. +|||++|+.|+.++ +++.+|.+.|+...|+.
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777775 79999999997776 88888888888765554
No 20
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=89.98 E-value=0.23 Score=55.42 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 012853 92 QEWAAIRIQTAFRGFLARRALRALK 116 (455)
Q Consensus 92 ee~AAI~IQsafRgylARR~~raLk 116 (455)
...+|++||++||||++|+.|+.++
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999998876
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=79.54 E-value=4.1 Score=36.78 Aligned_cols=24 Identities=8% Similarity=0.260 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012853 116 KGVVRLQALVRGRQVRKQAAVTLR 139 (455)
Q Consensus 116 kgiVrLQAlvRG~lvRrq~~~tlr 139 (455)
.++|.||+.+|||++|+++...+.
T Consensus 46 ~~~i~iQktvR~~L~rkkhkPRi~ 69 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHKPRID 69 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH
Confidence 478888999999999888844333
No 22
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=73.49 E-value=3.4 Score=28.05 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=16.5
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q 012853 140 CMQALVRVQARVRARRVRMS 159 (455)
Q Consensus 140 ~~~AaVrIQa~vRg~raR~~ 159 (455)
...+++.||..||+++.++.
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999998865
No 23
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=72.72 E-value=5.2 Score=46.04 Aligned_cols=44 Identities=9% Similarity=-0.060 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 012853 115 LKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIE 161 (455)
Q Consensus 115 LkgiVrLQAlvRG~lvRrq~~~tlr~~~AaVrIQa~vRg~raR~~~~ 161 (455)
+..++.+|..+||+++|+++ .+..++++.||...|.++.|....
T Consensus 774 ~~~~~~~iq~~r~~l~r~~~---~k~~~~a~~i~~~~r~~~~r~~~~ 817 (1052)
T 4anj_A 774 PDHLAELVKRVNHWLICSRW---KKVQWCSLSVIKLKNKIKYRAEAV 817 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34555565678999999998 556678888998888877665533
No 24
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=70.22 E-value=3.6 Score=27.07 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q 012853 140 CMQALVRVQARVRARRVRMS 159 (455)
Q Consensus 140 ~~~AaVrIQa~vRg~raR~~ 159 (455)
...|++.||..||+++.++.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45688899999999987754
No 25
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=48.08 E-value=18 Score=40.37 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 012853 142 QALVRVQARVRARRVRMSI 160 (455)
Q Consensus 142 ~AaVrIQa~vRg~raR~~~ 160 (455)
.+++.||+.+|++.+|+.+
T Consensus 769 ~~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 26
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=39.54 E-value=7.7 Score=44.26 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=17.0
Q ss_pred HHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 012853 98 RIQTAFRGFLARRALRALK-GVVRLQALVRGRQVRKQ 133 (455)
Q Consensus 98 ~IQsafRgylARR~~raLk-giVrLQAlvRG~lvRrq 133 (455)
.++.++|+.+++..++..+ +++.||.++||+..++.
T Consensus 769 ~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~ 805 (995)
T 2ycu_A 769 ELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKK 805 (995)
T ss_dssp HHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444444444444443333 45555555555544443
No 27
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=36.42 E-value=15 Score=23.46 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhHHHHH...
Q 012853 93 EWAAIRIQTAFRGFLARR... 110 (455)
Q Consensus 93 e~AAI~IQsafRgylARR... 110 (455)
.-|+..||-.||.+..|+
T Consensus 6 iYA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 6 IYAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHHhccC...
Confidence 358899999999987653
No 28
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=36.34 E-value=22 Score=23.17 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 012853 95 AAIRIQTAFRGFLARRAL 112 (455)
Q Consensus 95 AAI~IQsafRgylARR~~ 112 (455)
|...||-+||.|..|+.-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 567899999999888764
No 29
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=32.31 E-value=34 Score=24.04 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 012853 93 EWAAIRIQTAFRGFLARRAL 112 (455)
Q Consensus 93 e~AAI~IQsafRgylARR~~ 112 (455)
--|.-.||-+||.|..|+.-
T Consensus 11 fYatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 11 FYATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34778999999999988865
No 30
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=24.19 E-value=78 Score=28.89 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhh
Q 012853 139 RCMQALVRVQARVRARRVRMSIEG 162 (455)
Q Consensus 139 r~~~AaVrIQa~vRg~raR~~~~g 162 (455)
....||+.||..+|.++.|+....
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 457789999999999988765433
No 31
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=23.91 E-value=54 Score=21.41 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 012853 94 WAAIRIQTAFRGFLARRA 111 (455)
Q Consensus 94 ~AAI~IQsafRgylARR~ 111 (455)
-||..||-.||-+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 378999999999988875
Done!