BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012855
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna
Length = 382
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 176 SNPCDGRERFKKLVDSVSDATGKEDXXXXXXXXXXQKFASENGYNRL-------LLGLCT 228
+ P + RE ++++D A K+ QKF N + + L +CT
Sbjct: 82 ATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCT 141
Query: 229 SRIACHVITATVKGRGYSLPADI 251
+I+ HVI VK LP D+
Sbjct: 142 DQISIHVIQRVVK----QLPVDM 160
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 127 GVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVI------PIESIFCSNP 178
GV+F+DE Y P +E D + I++++ + +L VI +E+ F SNP
Sbjct: 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNP 189
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 127 GVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVI------PIESIFCSNP 178
GV+F+DE Y P +E D + I++++ + +L VI +E+ F SNP
Sbjct: 125 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNP 182
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 6 ATGC----QSGCYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCF 61
+TGC ++ YK++ +D+ + T+ N + V PG G DG
Sbjct: 182 STGCAPPGKNIYYKSDLTKDITTSVLTV---NNKAHMVTLDYTVQVPGTGRDG------- 231
Query: 62 RSNLFGKFRLAVASNALITPADNVLVAFSG 91
S F KFRL+ + L + + V AF G
Sbjct: 232 -SPGFSKFRLSYYPHCLASFTELVRAAFGG 260
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 6 ATGC----QSGCYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCF 61
+TGC ++ YK++ +D+ + T+ N + V PGAG DG
Sbjct: 182 STGCAPPGKNIYYKSDLTKDITTSVLTV---NNKAHMVTLDYTVQVPGAGRDG------- 231
Query: 62 RSNLFGKFRLAVASNALITPADNVLVAFSG 91
+ F KFRL+ + L + + V AF G
Sbjct: 232 -APGFSKFRLSYYPHCLASFTELVQEAFGG 260
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 6 ATGC----QSGCYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCF 61
+TGC ++ YK++ +D+ + T+ N + V PGAG DG
Sbjct: 183 STGCAPPGKNIYYKSDLTKDITTSVLTV---NNKAHMVTLDYTVQVPGAGRDG------- 232
Query: 62 RSNLFGKFRLAVASNALITPADNVLVAFSG 91
+ F KFRL+ + L + + V AF G
Sbjct: 233 -APGFSKFRLSYYPHCLASFTELVQEAFGG 261
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 6 ATGC----QSGCYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCF 61
+TGC ++ YK++ +D+ + T+ N + V PGAG DG
Sbjct: 182 STGCAPPGKNIYYKSDLTKDITTSVLTV---NNKAHMVTLDYTVQVPGAGRDG------- 231
Query: 62 RSNLFGKFRLAVASNALITPADNVLVAFSG 91
+ F KFRL+ + L + + V AF G
Sbjct: 232 -APGFSKFRLSYYPHCLASFTELVQEAFGG 260
>pdb|1SFN|A Chain A, Crystal Structure Of Protein Dr1152 From Deinococcus
Radiodurans R1, Pfam Duf861
pdb|1SFN|B Chain B, Crystal Structure Of Protein Dr1152 From Deinococcus
Radiodurans R1, Pfam Duf861
Length = 246
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 66 FGKFRLAV-ASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF 124
G+ R A+ S+A+ITP V A + P S + L PV
Sbjct: 4 LGQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIA-------------------PVV 44
Query: 125 GVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSN 157
G+G FV TA P + ++ Q ++S
Sbjct: 45 GLGARFVQFTAEMPAGAQATESVYQRFAFVLSG 77
>pdb|2JS3|A Chain A, Nmr Structure Of Protein Q6n9a4_rhopa. Northeast
Structural Genomics Consortium Target Rpt8
pdb|2JS3|B Chain B, Nmr Structure Of Protein Q6n9a4_rhopa. Northeast
Structural Genomics Consortium Target Rpt8
Length = 96
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 22 LKPATETIS--DSNEQNLCVKCKANEPTPGAGEDGKHCLDC 60
LK A E +S D N C C A+ P G++ KH DC
Sbjct: 38 LKTAIEIVSEEDGGAHNQCKLCGASVPWLQTGDEIKHADDC 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,792,811
Number of Sequences: 62578
Number of extensions: 504191
Number of successful extensions: 1017
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 9
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)