Query 012855
Match_columns 455
No_of_seqs 299 out of 1776
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2594 Uncharacterized conser 100.0 3.3E-46 7.1E-51 362.7 24.0 302 36-382 13-340 (396)
2 PRK10696 tRNA 2-thiocytidine b 100.0 3.5E-35 7.5E-40 287.3 27.6 230 62-327 9-241 (258)
3 PF01171 ATP_bind_3: PP-loop f 100.0 3.3E-32 7.2E-37 252.7 17.4 168 84-291 1-169 (182)
4 COG0037 MesJ tRNA(Ile)-lysidin 100.0 3.9E-31 8.5E-36 263.4 25.0 229 60-327 1-231 (298)
5 PRK10660 tilS tRNA(Ile)-lysidi 100.0 6.7E-30 1.5E-34 266.8 23.7 207 78-327 11-221 (436)
6 TIGR02432 lysidine_TilS_N tRNA 100.0 6.1E-27 1.3E-31 218.3 19.9 171 84-291 1-173 (189)
7 cd01993 Alpha_ANH_like_II This 99.9 1.5E-26 3.2E-31 214.2 17.9 179 84-291 1-180 (185)
8 cd01992 PP-ATPase N-terminal d 99.9 4.7E-26 1E-30 211.2 20.2 182 84-304 1-184 (185)
9 KOG2840 Uncharacterized conser 99.9 1.2E-25 2.5E-30 218.1 11.7 249 52-327 22-276 (347)
10 PF10288 DUF2392: Protein of u 99.9 7.3E-23 1.6E-27 173.8 7.7 95 231-325 1-107 (107)
11 PRK08349 hypothetical protein; 99.9 1E-20 2.2E-25 178.1 19.1 182 84-312 2-197 (198)
12 PRK00143 mnmA tRNA-specific 2- 99.9 6.5E-21 1.4E-25 193.8 15.4 202 84-317 2-216 (346)
13 cd01997 GMP_synthase_C The C-t 99.8 4.3E-20 9.4E-25 183.2 12.5 165 84-285 1-166 (295)
14 TIGR00884 guaA_Cterm GMP synth 99.8 1.8E-19 4E-24 180.2 16.3 175 61-285 2-181 (311)
15 PRK00074 guaA GMP synthase; Re 99.8 1.3E-19 2.9E-24 192.9 14.6 165 82-287 215-383 (511)
16 cd01712 ThiI ThiI is required 99.8 3.1E-18 6.8E-23 158.2 19.0 160 84-287 1-160 (177)
17 cd01998 tRNA_Me_trans tRNA met 99.8 9.4E-19 2E-23 178.3 14.2 176 84-287 1-185 (349)
18 PRK00919 GMP synthase subunit 99.8 5E-18 1.1E-22 169.0 16.3 161 82-287 21-181 (307)
19 PRK14665 mnmA tRNA-specific 2- 99.8 5.5E-18 1.2E-22 172.6 15.6 176 78-286 1-183 (360)
20 cd01990 Alpha_ANH_like_I This 99.8 5E-18 1.1E-22 160.0 12.4 150 85-289 1-152 (202)
21 PRK08384 thiamine biosynthesis 99.7 4E-17 8.7E-22 167.1 18.0 158 79-284 177-339 (381)
22 cd01713 PAPS_reductase This do 99.7 3.8E-17 8.3E-22 148.1 12.3 164 84-288 1-164 (173)
23 PRK14664 tRNA-specific 2-thiou 99.7 1.3E-17 2.9E-22 169.5 9.7 171 78-286 1-178 (362)
24 TIGR00342 thiazole biosynthesi 99.7 2.1E-16 4.6E-21 162.3 17.7 159 78-283 168-328 (371)
25 TIGR00420 trmU tRNA (5-methyla 99.7 3.2E-17 7E-22 166.9 11.5 174 84-288 2-189 (352)
26 PRK14561 hypothetical protein; 99.7 1.3E-16 2.9E-21 149.6 14.4 145 84-281 2-146 (194)
27 TIGR00268 conserved hypothetic 99.7 6.3E-17 1.4E-21 157.9 12.2 153 79-288 9-163 (252)
28 PRK01269 tRNA s(4)U8 sulfurtra 99.7 2.3E-16 5.1E-21 167.2 14.3 194 79-322 174-375 (482)
29 TIGR00552 nadE NAD+ synthetase 99.7 2.9E-15 6.2E-20 146.1 19.1 155 81-286 21-178 (250)
30 PRK05253 sulfate adenylyltrans 99.7 2E-15 4.3E-20 150.3 17.9 182 66-289 17-209 (301)
31 PRK13820 argininosuccinate syn 99.7 1.3E-15 2.9E-20 156.1 14.8 163 82-297 2-174 (394)
32 cd01995 ExsB ExsB is a transcr 99.6 8.4E-15 1.8E-19 134.2 13.1 136 84-287 1-142 (169)
33 PRK08576 hypothetical protein; 99.6 5.2E-14 1.1E-18 146.1 18.4 176 58-287 214-389 (438)
34 cd01986 Alpha_ANH_like Adenine 99.6 2.2E-14 4.8E-19 120.8 11.5 103 85-267 1-103 (103)
35 PRK01565 thiamine biosynthesis 99.6 4.7E-14 1E-18 146.1 15.4 159 78-283 172-332 (394)
36 TIGR02039 CysD sulfate adenyly 99.5 1.9E-13 4.1E-18 135.2 17.7 183 65-289 8-201 (294)
37 TIGR00032 argG argininosuccina 99.5 1.4E-13 3.1E-18 141.6 15.7 153 84-288 1-165 (394)
38 TIGR00364 exsB protein. This p 99.5 6E-14 1.3E-18 132.3 11.5 162 85-282 1-172 (201)
39 PRK02090 phosphoadenosine phos 99.5 3.5E-13 7.6E-18 130.7 14.3 155 82-287 40-196 (241)
40 PF03054 tRNA_Me_trans: tRNA m 99.5 8.9E-14 1.9E-18 141.1 7.4 176 84-287 2-189 (356)
41 cd00553 NAD_synthase NAD+ synt 99.5 9E-13 2E-17 128.4 13.8 154 82-286 23-180 (248)
42 PRK00509 argininosuccinate syn 99.4 2.4E-12 5.3E-17 132.3 17.3 156 83-287 3-168 (399)
43 COG0482 TrmU Predicted tRNA(5- 99.4 9.4E-13 2E-17 132.1 13.9 181 82-290 3-190 (356)
44 PF02568 ThiI: Thiamine biosyn 99.4 1.1E-12 2.4E-17 122.7 13.0 158 82-283 3-161 (197)
45 PRK13980 NAD synthetase; Provi 99.4 6.1E-12 1.3E-16 123.8 18.1 167 60-284 12-180 (265)
46 PLN02347 GMP synthetase 99.4 2.2E-12 4.8E-17 137.8 14.3 165 78-284 225-404 (536)
47 COG0519 GuaA GMP synthase, PP- 99.4 5.4E-12 1.2E-16 121.0 15.2 199 60-309 6-216 (315)
48 TIGR03573 WbuX N-acetyl sugar 99.4 2.3E-11 5.1E-16 123.9 17.3 158 36-230 2-172 (343)
49 PLN00200 argininosuccinate syn 99.3 1.5E-11 3.2E-16 126.7 15.1 165 83-297 6-181 (404)
50 COG1606 ATP-utilizing enzymes 99.3 2.1E-11 4.6E-16 116.0 14.0 153 79-287 14-168 (269)
51 cd01999 Argininosuccinate_Synt 99.3 2E-11 4.4E-16 125.4 14.2 155 85-287 1-165 (385)
52 PRK12563 sulfate adenylyltrans 99.3 4.5E-11 9.7E-16 118.9 14.5 170 83-288 38-218 (312)
53 PRK04527 argininosuccinate syn 99.3 3.7E-11 8E-16 123.3 14.0 164 82-297 2-178 (400)
54 cd01996 Alpha_ANH_like_III Thi 99.3 3E-11 6.5E-16 108.8 10.9 112 84-231 3-115 (154)
55 PRK11106 queuosine biosynthesi 99.2 5.5E-10 1.2E-14 107.4 14.2 166 83-285 2-180 (231)
56 TIGR00269 conserved hypothetic 99.1 2.8E-10 6.1E-15 96.1 7.7 68 260-327 1-69 (104)
57 COG0301 ThiI Thiamine biosynth 99.1 3.2E-09 6.9E-14 108.1 16.1 157 80-283 173-332 (383)
58 PF06508 QueC: Queuosine biosy 99.0 2.4E-09 5.1E-14 101.7 11.9 160 84-286 1-178 (209)
59 PF01507 PAPS_reduct: Phosphoa 99.0 6E-10 1.3E-14 101.7 6.8 156 84-287 1-157 (174)
60 PRK05370 argininosuccinate syn 99.0 6.7E-09 1.5E-13 107.0 14.2 159 79-287 8-185 (447)
61 PRK02628 nadE NAD synthetase; 99.0 1.8E-08 3.9E-13 111.5 17.2 156 82-281 361-521 (679)
62 PF02540 NAD_synthase: NAD syn 98.9 1.6E-08 3.6E-13 98.1 14.3 153 83-286 19-171 (242)
63 cd01994 Alpha_ANH_like_IV This 98.9 4.1E-08 9E-13 92.2 15.4 142 84-287 1-142 (194)
64 TIGR02057 PAPS_reductase phosp 98.9 3.2E-08 7E-13 95.1 13.8 164 82-289 25-188 (226)
65 KOG2805 tRNA (5-methylaminomet 98.8 4.6E-08 1E-12 95.4 10.5 174 81-287 4-195 (377)
66 cd01984 AANH_like Adenine nucl 98.8 2.3E-08 4.9E-13 81.0 7.1 35 205-239 35-69 (86)
67 TIGR00434 cysH phosophoadenyly 98.8 1E-07 2.2E-12 90.7 12.7 156 82-287 13-171 (212)
68 PTZ00323 NAD+ synthase; Provis 98.7 8.1E-07 1.8E-11 88.4 19.4 180 56-284 24-211 (294)
69 PRK13795 hypothetical protein; 98.7 2E-07 4.3E-12 102.4 16.3 156 82-287 243-402 (636)
70 PRK08557 hypothetical protein; 98.7 6.2E-07 1.3E-11 93.4 18.8 190 82-323 181-381 (417)
71 COG0137 ArgG Argininosuccinate 98.7 4.3E-07 9.4E-12 91.5 15.0 167 81-297 3-179 (403)
72 PRK13794 hypothetical protein; 98.6 1.3E-06 2.8E-11 92.9 18.2 157 82-288 247-407 (479)
73 TIGR03679 arCOG00187 arCOG0018 98.6 5E-07 1.1E-11 86.4 12.2 139 86-287 1-140 (218)
74 PRK00876 nadE NAD synthetase; 98.6 2.2E-06 4.7E-11 86.6 16.7 179 61-285 15-238 (326)
75 COG0175 CysH 3'-phosphoadenosi 98.5 6.8E-07 1.5E-11 87.8 11.1 157 84-288 41-199 (261)
76 PF00764 Arginosuc_synth: Argi 98.5 1E-06 2.2E-11 90.4 10.9 155 86-287 1-163 (388)
77 COG0603 Predicted PP-loop supe 98.4 2.1E-06 4.6E-11 81.3 11.4 155 83-286 3-181 (222)
78 PRK13981 NAD synthetase; Provi 98.4 5.3E-06 1.1E-10 89.8 15.3 154 82-282 280-433 (540)
79 COG2117 Predicted subunit of t 98.3 5.8E-06 1.3E-10 73.8 11.3 171 84-305 2-173 (198)
80 cd01991 Asn_Synthase_B_C The C 98.3 4.9E-06 1.1E-10 81.4 10.4 119 79-232 12-130 (269)
81 PRK00768 nadE NAD synthetase; 98.3 2.7E-05 5.9E-10 76.5 15.0 158 82-284 38-200 (268)
82 KOG1622 GMP synthase [Nucleoti 98.2 7.4E-06 1.6E-10 83.7 9.7 167 78-287 227-408 (552)
83 TIGR03183 DNA_S_dndC putative 98.2 4.5E-05 9.7E-10 80.0 15.0 187 82-286 13-205 (447)
84 PRK06850 hypothetical protein; 98.0 7.8E-05 1.7E-09 79.2 13.7 184 82-286 34-224 (507)
85 TIGR01536 asn_synth_AEB aspara 98.0 6.2E-05 1.3E-09 80.1 13.0 135 62-231 235-369 (467)
86 PF00733 Asn_synthase: Asparag 98.0 8.8E-05 1.9E-09 71.3 12.9 132 66-232 3-134 (255)
87 COG0171 NadE NAD synthase [Coe 97.8 0.00039 8.5E-09 68.3 13.7 160 83-285 26-186 (268)
88 TIGR02055 APS_reductase thiore 97.7 0.00058 1.2E-08 64.0 11.9 146 91-287 1-150 (191)
89 TIGR00289 conserved hypothetic 97.6 0.0014 3.1E-08 62.8 14.5 135 84-287 2-138 (222)
90 TIGR00424 APS_reduc 5'-adenyly 97.5 0.0015 3.2E-08 69.1 13.6 160 82-288 115-282 (463)
91 COG3969 Predicted phosphoadeno 97.5 0.004 8.7E-08 62.2 15.2 181 81-286 26-233 (407)
92 KOG1706 Argininosuccinate synt 97.4 0.0014 2.9E-08 64.5 10.7 160 83-287 6-174 (412)
93 PLN02309 5'-adenylylsulfate re 97.3 0.003 6.4E-08 66.8 13.5 160 82-288 110-277 (457)
94 COG1365 Predicted ATPase (PP-l 97.0 0.0016 3.6E-08 60.9 6.9 142 83-285 61-204 (255)
95 PLN02549 asparagine synthase ( 96.8 0.015 3.1E-07 63.6 13.1 140 64-231 209-348 (578)
96 TIGR00290 MJ0570_dom MJ0570-re 96.8 0.044 9.4E-07 52.6 14.7 137 84-287 2-139 (223)
97 cd01987 USP_OKCHK USP domain i 96.7 0.024 5.2E-07 48.3 11.4 98 84-231 1-98 (124)
98 PLN02339 NAD+ synthase (glutam 96.6 0.04 8.6E-07 61.7 14.4 106 146-279 426-552 (700)
99 PF01902 ATP_bind_4: ATP-bindi 96.5 0.017 3.6E-07 55.3 9.8 138 84-287 2-139 (218)
100 PF02677 DUF208: Uncharacteriz 96.3 0.067 1.5E-06 49.3 11.6 108 85-224 1-110 (176)
101 PRK10490 sensor protein KdpD; 96.2 0.038 8.3E-07 63.6 12.3 100 80-229 248-347 (895)
102 PTZ00077 asparagine synthetase 96.1 0.064 1.4E-06 58.8 12.8 140 63-231 220-362 (586)
103 PRK09431 asnB asparagine synth 96.0 0.1 2.2E-06 56.9 13.7 142 63-232 210-355 (554)
104 TIGR03104 trio_amidotrans aspa 95.4 0.21 4.6E-06 54.9 13.3 134 63-231 243-376 (589)
105 COG0367 AsnB Asparagine syntha 95.4 0.27 5.9E-06 53.5 13.9 136 60-231 210-345 (542)
106 COG2102 Predicted ATPases of P 95.2 1.1 2.3E-05 42.9 15.5 139 84-288 2-141 (223)
107 TIGR03108 eps_aminotran_1 exos 95.2 0.27 5.9E-06 54.4 13.5 131 63-232 241-371 (628)
108 PRK09982 universal stress prot 95.0 0.77 1.7E-05 40.3 13.2 39 83-134 4-42 (142)
109 COG2205 KdpD Osmosensitive K+ 94.7 0.45 9.7E-06 53.2 13.0 101 81-231 247-347 (890)
110 COG1636 Uncharacterized protei 94.4 0.68 1.5E-05 43.0 11.4 106 83-223 4-115 (204)
111 cd00293 USP_Like Usp: Universa 94.1 0.64 1.4E-05 38.6 10.3 101 84-230 1-105 (130)
112 cd01989 STK_N The N-terminal d 93.1 0.79 1.7E-05 40.0 9.6 37 84-133 1-37 (146)
113 cd01988 Na_H_Antiporter_C The 93.1 0.69 1.5E-05 39.2 8.9 38 84-134 1-38 (132)
114 KOG0189 Phosphoadenosine phosp 92.0 2.6 5.7E-05 39.7 11.5 160 78-288 42-207 (261)
115 PRK15118 universal stress glob 91.8 3.3 7.1E-05 36.0 11.7 38 83-133 4-41 (144)
116 KOG0573 Asparagine synthase [A 91.3 0.87 1.9E-05 47.5 8.3 75 83-171 251-326 (520)
117 PRK15005 universal stress prot 90.8 1.2 2.6E-05 38.7 7.9 23 209-231 98-120 (144)
118 cd05565 PTS_IIB_lactose PTS_II 89.7 1.3 2.9E-05 37.0 6.8 76 84-175 2-84 (99)
119 PF00582 Usp: Universal stress 88.3 9.9 0.00022 31.5 11.6 39 83-134 3-41 (140)
120 PRK15456 universal stress prot 85.8 5.2 0.00011 34.8 8.6 21 210-230 97-117 (142)
121 PRK10116 universal stress prot 85.3 23 0.0005 30.4 13.0 28 209-236 93-120 (142)
122 KOG0571 Asparagine synthase (g 84.9 6.9 0.00015 40.9 9.9 134 65-231 210-346 (543)
123 PTZ00218 40S ribosomal protein 84.5 0.79 1.7E-05 33.7 2.2 31 35-66 16-46 (54)
124 PRK09590 celB cellobiose phosp 83.3 5.6 0.00012 33.5 7.2 75 84-175 3-87 (104)
125 TIGR00853 pts-lac PTS system, 77.9 6.6 0.00014 32.4 5.8 73 83-171 4-84 (95)
126 cd01400 6PGL 6PGL: 6-Phosphogl 77.9 25 0.00054 33.5 10.7 70 63-155 9-79 (219)
127 PRK12652 putative monovalent c 77.3 17 0.00037 37.5 9.9 40 83-133 6-45 (357)
128 COG0199 RpsN Ribosomal protein 72.4 2.7 5.9E-05 31.8 1.9 28 35-65 21-48 (61)
129 cd05564 PTS_IIB_chitobiose_lic 70.5 11 0.00024 31.0 5.4 24 84-107 1-24 (96)
130 PRK11175 universal stress prot 63.8 66 0.0014 31.5 10.5 21 209-229 252-272 (305)
131 PLN02360 probable 6-phosphoglu 63.8 1.2E+02 0.0026 29.8 12.2 58 81-153 40-98 (268)
132 TIGR00502 nagB glucosamine-6-p 60.8 1.5E+02 0.0032 28.9 12.1 60 81-154 31-92 (259)
133 PF02302 PTS_IIB: PTS system, 59.4 25 0.00055 27.9 5.5 36 84-132 1-37 (90)
134 PRK11175 universal stress prot 58.7 99 0.0021 30.3 10.7 23 208-230 97-119 (305)
135 cd00458 SugarP_isomerase Sugar 58.6 1.4E+02 0.0031 27.0 12.2 71 63-155 6-77 (169)
136 TIGR01198 pgl 6-phosphoglucono 57.7 66 0.0014 30.9 9.0 68 63-154 14-82 (233)
137 PF01182 Glucosamine_iso: Gluc 55.6 59 0.0013 30.4 8.0 72 63-155 7-79 (199)
138 PRK05766 rps14P 30S ribosomal 54.9 15 0.00032 27.0 3.0 31 35-66 14-44 (52)
139 PF11290 DUF3090: Protein of u 52.2 8.6 0.00019 35.2 1.7 16 363-378 154-169 (171)
140 PRK08305 spoVFB dipicolinate s 51.1 25 0.00055 33.1 4.7 36 81-130 4-40 (196)
141 PF02441 Flavoprotein: Flavopr 46.6 23 0.00051 30.5 3.5 33 84-130 2-34 (129)
142 PRK07313 phosphopantothenoylcy 45.9 31 0.00067 32.0 4.4 24 83-106 2-25 (182)
143 TIGR00421 ubiX_pad polyprenyl 45.3 24 0.00053 32.6 3.6 33 84-130 1-33 (181)
144 PRK05920 aromatic acid decarbo 44.9 33 0.00073 32.5 4.5 26 82-107 3-28 (204)
145 COG0788 PurU Formyltetrahydrof 44.1 2E+02 0.0043 28.5 9.6 97 82-238 90-186 (287)
146 PTZ00285 glucosamine-6-phospha 43.9 1E+02 0.0022 30.0 7.9 61 80-154 30-92 (253)
147 KOG3147 6-phosphogluconolacton 43.4 3.3E+02 0.0071 26.7 12.3 90 61-172 24-114 (252)
148 PRK10499 PTS system N,N'-diace 43.3 52 0.0011 27.7 5.0 23 83-105 4-26 (106)
149 TIGR02113 coaC_strep phosphopa 42.4 34 0.00073 31.6 4.0 33 84-130 2-34 (177)
150 TIGR03847 conserved hypothetic 42.0 15 0.00033 33.7 1.6 16 363-378 156-171 (177)
151 COG1440 CelA Phosphotransferas 41.4 1E+02 0.0022 25.9 6.2 71 84-172 3-83 (102)
152 PRK00032 Maf-like protein; Rev 41.3 1.1E+02 0.0024 28.6 7.3 81 229-315 86-171 (190)
153 PF14471 DUF4428: Domain of un 41.2 20 0.00043 26.1 1.8 28 37-64 1-30 (51)
154 PRK14368 Maf-like protein; Pro 41.1 1.6E+02 0.0034 27.6 8.4 114 196-315 42-175 (193)
155 TIGR03826 YvyF flagellar opero 40.9 28 0.00061 30.9 3.1 37 36-76 4-42 (137)
156 PRK02122 glucosamine-6-phospha 38.6 2.6E+02 0.0055 31.4 10.8 62 61-135 39-101 (652)
157 PRK14367 Maf-like protein; Pro 37.8 1.3E+02 0.0028 28.4 7.2 81 229-315 92-177 (202)
158 PRK07667 uridine kinase; Provi 37.1 49 0.0011 30.6 4.3 39 82-133 15-55 (193)
159 PF04423 Rad50_zn_hook: Rad50 36.6 8.2 0.00018 28.2 -0.8 14 364-377 21-34 (54)
160 PRK06029 3-octaprenyl-4-hydrox 36.6 50 0.0011 30.8 4.2 24 83-106 2-25 (185)
161 PRK10310 PTS system galactitol 35.4 78 0.0017 25.9 4.8 37 84-133 4-41 (94)
162 PF00253 Ribosomal_S14: Riboso 34.3 86 0.0019 23.1 4.4 30 34-66 15-44 (55)
163 PRK00133 metG methionyl-tRNA s 32.8 52 0.0011 36.9 4.4 79 363-447 139-220 (673)
164 COG2174 RPL34A Ribosomal prote 32.6 29 0.00063 28.4 1.7 41 362-404 33-80 (93)
165 PRK00148 Maf-like protein; Rev 30.4 2.2E+02 0.0047 26.7 7.4 113 197-315 39-171 (194)
166 TIGR00521 coaBC_dfp phosphopan 30.2 69 0.0015 33.5 4.5 26 81-106 2-27 (390)
167 PF14946 DUF4501: Domain of un 30.1 36 0.00077 30.9 2.0 31 2-45 21-51 (180)
168 cd01523 RHOD_Lact_B Member of 28.2 1.1E+02 0.0025 24.5 4.7 27 79-105 58-84 (100)
169 COG0363 NagB 6-phosphogluconol 28.1 4E+02 0.0088 25.7 9.1 59 82-155 31-90 (238)
170 COG0794 GutQ Predicted sugar p 27.9 1.1E+02 0.0025 28.9 5.1 42 77-133 82-123 (202)
171 PRK08061 rpsN 30S ribosomal pr 26.9 56 0.0012 24.8 2.3 28 35-65 21-48 (61)
172 KOG2303 Predicted NAD synthase 26.8 51 0.0011 35.3 2.7 23 83-105 350-372 (706)
173 PF00412 LIM: LIM domain; Int 26.8 36 0.00079 24.5 1.3 28 37-65 28-58 (58)
174 TIGR02852 spore_dpaB dipicolin 26.2 85 0.0018 29.3 3.9 34 84-131 2-36 (187)
175 COG0622 Predicted phosphoester 26.1 62 0.0013 29.8 2.9 29 207-235 98-126 (172)
176 PRK05579 bifunctional phosphop 26.0 88 0.0019 32.8 4.4 26 81-106 5-30 (399)
177 PRK04425 Maf-like protein; Rev 25.7 2.1E+02 0.0046 26.9 6.5 114 196-314 42-176 (196)
178 PRK09762 galactosamine-6-phosp 25.5 3.5E+02 0.0076 25.9 8.2 41 83-134 28-69 (232)
179 PRK13982 bifunctional SbtC-lik 24.3 93 0.002 33.4 4.2 35 82-130 70-104 (475)
180 PRK06696 uridine kinase; Valid 24.0 1.2E+02 0.0026 28.6 4.6 26 81-106 19-46 (223)
181 PF01439 Metallothio_2: Metall 23.2 51 0.0011 26.0 1.5 14 1-14 1-16 (74)
182 cd01520 RHOD_YbbB Member of th 23.1 1.4E+02 0.003 25.4 4.5 28 78-105 82-110 (128)
183 PRK14364 Maf-like protein; Pro 23.0 2.6E+02 0.0055 25.9 6.4 138 153-315 10-165 (181)
184 PF00071 Ras: Ras family; Int 22.8 1.7E+02 0.0036 25.3 5.0 43 266-308 119-161 (162)
185 KOG3125 Thymidine kinase [Nucl 22.6 1.3E+02 0.0027 28.6 4.2 70 125-204 104-173 (234)
186 PF14169 YdjO: Cold-inducible 22.1 53 0.0012 24.8 1.3 14 362-375 38-51 (59)
187 PHA02565 49 recombination endo 21.8 66 0.0014 29.1 2.1 83 363-445 20-130 (157)
188 COG1135 AbcC ABC-type metal io 21.5 6.7E+02 0.015 25.6 9.3 13 82-94 135-147 (339)
189 KOG0933 Structural maintenance 21.0 1E+02 0.0023 35.8 3.9 62 89-172 1083-1145(1174)
190 PF12251 zf-SNAP50_C: snRNA-ac 20.6 74 0.0016 29.9 2.4 31 34-64 138-175 (196)
191 PLN02496 probable phosphopanto 20.2 1.4E+02 0.003 28.5 4.0 25 81-105 18-42 (209)
No 1
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.3e-46 Score=362.69 Aligned_cols=302 Identities=40% Similarity=0.583 Sum_probs=223.9
Q ss_pred ccccccCCCCCc-eecCCCCCCcHHHHHHHHHHHHHH--HHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhc
Q 012855 36 NLCVKCKANEPT-PGAGEDGKHCLDCFRSNLFGKFRL--AVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKN 112 (455)
Q Consensus 36 ~~C~kCk~~~av-~~~r~~~~~C~~CF~~~i~~Kfr~--~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~ 112 (455)
..|+||+.++.. .+..+..|||++||.+++++|||+ +....++..+.+.+|+++|||.+|+|||++++- ..++.+.
T Consensus 13 s~c~KCd~na~~~~v~~~k~~~C~eCFv~~v~~KfR~qla~~~~~~~~~sk~vLlv~~G~ssSlvlLd~vh~-~l~q~k~ 91 (396)
T KOG2594|consen 13 SACVKCDKNANMTTVDGKKDAFCDECFVNNVRNKFRLQLAVPSHKMGTPSKNVLLVFDGGSSSLVLLDFVHL-ALKQLKN 91 (396)
T ss_pred ccccccccCCCcccccccchhHHHHHHHHHHHHHHHHHhhcchhhcCCcccceEEEecCCcchHhHHHHHHH-HHHHhhh
Confidence 348888765543 344556669999999999999999 566667899999999999999999999999993 2222111
Q ss_pred cccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCcEEE--Eeccc----------cccCCCCC
Q 012855 113 FDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHV--IPIES----------IFCSNPCD 180 (455)
Q Consensus 113 ~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~~i--v~l~~----------v~~~~~~~ 180 (455)
++.+++|.+.|+.+-.- ...+ ....+.+++...+.. |...|.+ +...+ ..+.....
T Consensus 92 -----~~~~~~~tv~v~~~~~~--~~~~----~~v~e~lq~l~~~~~-~~~~~~V~~la~~~~~~~~~~~~~~~~n~El~ 159 (396)
T KOG2594|consen 92 -----KRLRRDFTVLVLVVFQE--FTDS----TAVFEALQELIIDNI-EWVRYVVSCLAPPEKDNHVVPVESINGNDELI 159 (396)
T ss_pred -----hhcCcCCceEEEEEEEe--ccch----HHHHHHHHHHHHhhc-cccceEEEecCchHhhcCcccccccCCCceee
Confidence 23345676555443211 1111 134566666666543 3334433 11111 11110000
Q ss_pred hhHHHHHH--HhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCC
Q 012855 181 GRERFKKL--VDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARW 258 (455)
Q Consensus 181 ~~~~L~~l--l~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~ 258 (455)
.+.+.+ .++++.. +|+|+++++|.++|.++|.++||++|++||+++|+|+.+|..+++|||++++|++...+.++
T Consensus 160 --ak~~kl~~~~sv~~~-srqDLl~~lk~kll~~vA~~~g~~~i~~g~~~t~la~~vlt~v~~GRG~sis~~v~~~d~r~ 236 (396)
T KOG2594|consen 160 --AKDRKLKLSDSVPDD-SRQDLLLHLKMKLLQKVAAENGYNRIVLGDSTTDLASHVLTAVVKGRGGSISTDVQVVDKRP 236 (396)
T ss_pred --cchhhcccccccccc-hHHHHHHHHHHHHHHHHHHHcCCCEEEecCchhHHHHHHHHHHHhccCccceehhhhhcccc
Confidence 112222 2355555 48999999999999999999999999999999999999999999999999999999999987
Q ss_pred C--cceEecCccccHHHHHHHHHHcCCCccccc-----CC--CCCcHHHHHHHHHHHHHHhCCChHHHHHHhHhhhCCCc
Q 012855 259 E--IPVVLPLRDCLAQELNMLCQLDCLKTVELL-----NQ--THSGINGLVSSFVKILQEENPSRESTIMRTAGKLTPFH 329 (455)
Q Consensus 259 ~--v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~-----~~--~~~Si~~l~~~fi~~Le~~~Pstv~tI~rT~~KL~~~~ 329 (455)
. ++++|||+|+.+.||..|+++.+|++.... -+ .+.||+.++..||..||.+||++++||+||+.||..+.
T Consensus 237 ~~d~~llrPLrDl~~~Ei~~y~~l~~l~~~~c~~~~k~~~~~~q~sI~~lT~afva~Lqn~f~S~vsTV~rTaaKl~~~s 316 (396)
T KOG2594|consen 237 KGDVKLLRPLRDLLSLEITSYCLLDGLAYYFCQGRRKTVELASQCSINDLTSAFVALLQNEFPSTVSTVVRTAAKLTVPS 316 (396)
T ss_pred CCCceeehhHHHHHHHHHHHHHHhhcCCchhhhHHHhhccchhhccHHHHHHHHHHHHHhhcchHHHHHHhhhhhhcCCC
Confidence 4 999999999999999999999999964321 11 56799999999999999999999999999999999742
Q ss_pred cCCCCCCCCCCcchhhhhhhhhccCCCCCCCCccccCcccCCCCCcccCCCcc
Q 012855 330 FNKIPELNDSSVPLASQRRQKRFNLKPNESISSESFCSLCYSPLNQSDLTSLS 382 (455)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~lC~~~ld~~~~~~~~ 382 (455)
.+. .+..|++|++|++.+...++.
T Consensus 317 ---~s~--------------------------~es~C~iCn~~l~~~~s~~L~ 340 (396)
T KOG2594|consen 317 ---FSM--------------------------TESFCPICNSPLNRSDSSWLD 340 (396)
T ss_pred ---CCC--------------------------CcccccccCCcccCCchhhhh
Confidence 111 267999999999998885443
No 2
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=100.00 E-value=3.5e-35 Score=287.31 Aligned_cols=230 Identities=19% Similarity=0.241 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCC
Q 012855 62 RSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPS 141 (455)
Q Consensus 62 ~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~ 141 (455)
.+.+.++|.++|.+++|+.+|++|+||+|||+||++|||+|+++... ...+|++.+||||+|. ++++
T Consensus 9 ~~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~-----------~~~~~~l~av~vd~g~-~~~~- 75 (258)
T PRK10696 9 QKRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKR-----------APINFELVAVNLDQKQ-PGFP- 75 (258)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh-----------CCCCeEEEEEEecCCC-CCCC-
Confidence 36789999999999999999999999999999999999999987431 1236899999999994 5432
Q ss_pred chhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcE
Q 012855 142 SEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNR 221 (455)
Q Consensus 142 ~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~ 221 (455)
.+.++++|+++ |++++++.++. ++.. ....+...+.|.+|+.+||++|.++|+++|+++
T Consensus 76 ------~~~~~~~~~~l---gI~~~v~~~~~-~~~~-----------~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~ 134 (258)
T PRK10696 76 ------EHVLPEYLESL---GVPYHIEEQDT-YSIV-----------KEKIPEGKTTCSLCSRLRRGILYRTARELGATK 134 (258)
T ss_pred ------HHHHHHHHHHh---CCCEEEEEecc-hhhh-----------hhhhccCCChhHHHHHHHHHHHHHHHHHcCCCE
Confidence 23578999998 79999887542 2210 111223457899999999999999999999999
Q ss_pred EEcccchhHHHHHHHHHHhccCCCC-CCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcccccC-C-CCCcHHH
Q 012855 222 LLLGLCTSRIACHVITATVKGRGYS-LPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLN-Q-THSGING 298 (455)
Q Consensus 222 l~lGh~~ddlAet~L~nl~~GrG~s-l~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~-~-~~~Si~~ 298 (455)
|++|||.||++||+|+|+.+|.|.. ++.... .....+.+||||.+++++||..|++.++||++...+ + .....+.
T Consensus 135 Ia~GH~~dD~~Et~l~nl~rg~~l~~m~~~~~--~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~~~~~~~~~~~~~R~ 212 (258)
T PRK10696 135 IALGHHRDDILETLFLNMFYGGKLKAMPPKLL--SDDGKHIVIRPLAYVAEKDIIKFAEAKEFPIIPCNLCGSQENLQRQ 212 (258)
T ss_pred EEEcCchHHHHHHHHHHHHhCCcccccCCeee--cCCCceeEEecCccCCHHHHHHHHHHcCCCEeeCCCCCCCchhHHH
Confidence 9999999999999999999997622 222111 112357899999999999999999999999985443 3 2234566
Q ss_pred HHHHHHHHHHHhCCChHHHHHHhHhhhCC
Q 012855 299 LVSSFVKILQEENPSRESTIMRTAGKLTP 327 (455)
Q Consensus 299 l~~~fi~~Le~~~Pstv~tI~rT~~KL~~ 327 (455)
.++++++.|++.||++..||++++.++..
T Consensus 213 ~ir~~l~~L~~~~P~~~~~i~~~~~~~~~ 241 (258)
T PRK10696 213 VVKEMLRDWEKEYPGRIETMFRALQNVVP 241 (258)
T ss_pred HHHHHHHHHHHHCccHHHHHHHHHhhcch
Confidence 67799999999999999999999999986
No 3
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=100.00 E-value=3.3e-32 Score=252.75 Aligned_cols=168 Identities=23% Similarity=0.261 Sum_probs=123.9
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
||+||+|||+||++||++|..+.. ..++++.++|||||+ ++. .....+.++++|+++ ++
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~-------------~~~~~~~~~~vdh~~-~~~----s~~~~~~v~~~~~~~---~i 59 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRR-------------RNGIKLIAVHVDHGL-REE----SDEEAEFVEEICEQL---GI 59 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHT-------------TTTTEEEEEEEE-ST-SCC----HHHHHHHHHHHHHHT---T-
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHH-------------hcCCCeEEEEEecCC-Ccc----cchhHHHHHHHHHhc---CC
Confidence 799999999999999999998743 125699999999995 543 235678899999998 79
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccC
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGR 243 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~Gr 243 (455)
+++++.++. . .....+.|..+|.+||++|.++|+++||++|++|||+||++||+|+|+.+|.
T Consensus 60 ~~~~~~~~~--~----------------~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET~l~~l~rg~ 121 (182)
T PF01171_consen 60 PLYIVRIDE--D----------------RKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAETFLMNLLRGS 121 (182)
T ss_dssp EEEEEE--C--H----------------CCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHHHHHHHHHT-
T ss_pred ceEEEEeee--e----------------ecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHHHHHHHHHhc
Confidence 999988763 1 1234677999999999999999999999999999999999999999999998
Q ss_pred CCC-CCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcccccCC
Q 012855 244 GYS-LPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQ 291 (455)
Q Consensus 244 G~s-l~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~ 291 (455)
|.. +.+... .....++++||||+.++++||..|++.++||+++++++
T Consensus 122 ~~~~l~~~~~-~~~~~~~~~iRPLl~~~k~ei~~~~~~~~i~~~~D~tN 169 (182)
T PF01171_consen 122 GLRGLAGMPP-VSPFKGIKLIRPLLYVSKDEIRAYAKENGIPYVEDPTN 169 (182)
T ss_dssp -CCCCC-S-S-EEEETTCEEE-GGGCS-HHHHHHHHHHTT-SSBS-CCG
T ss_pred cchhhccccc-cccccCcccCCcchhCCHHHHHHHHHHCCCcEEECcCC
Confidence 852 222111 11224699999999999999999999999999986654
No 4
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.9e-31 Score=263.38 Aligned_cols=229 Identities=21% Similarity=0.198 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCC
Q 012855 60 CFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPV 139 (455)
Q Consensus 60 CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~ 139 (455)
||...+..++.+.+.++.++ +++|+||||||+||++||++|.++.. .+++.++|||||+ .++
T Consensus 1 ~~~~~~~~~v~~~i~~~~~~--~~~ilVavSGGkDS~~ll~~L~~l~~---------------~~~~~a~~Vd~~~-~~~ 62 (298)
T COG0037 1 CLREKLERKVKRAIREFNLI--EYKILVAVSGGKDSLALLHLLKELGR---------------RIEVEAVHVDHGL-RGY 62 (298)
T ss_pred ChHHHHHHHHHHHHHhcccc--CCeEEEEeCCChHHHHHHHHHHHhcc---------------CceEEEEEecCCC-CCc
Confidence 57788999999999999888 89999999999999999999998721 1789999999995 654
Q ss_pred CCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 012855 140 PSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGY 219 (455)
Q Consensus 140 s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~ 219 (455)
+ +...+.++.+|+.+ ++++++..+.+.+.... .. ..+.|..|+.+||++|.++|+++|+
T Consensus 63 ~----~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~-------------~~-~~~~c~~c~~~R~~~l~~~a~~~g~ 121 (298)
T COG0037 63 S----DQEAELVEKLCEKL---GIPLIVERVTDDLGRET-------------LD-GKSICAACRRLRRGLLYKIAKELGA 121 (298)
T ss_pred c----chHHHHHHHHHHHh---CCceEEEEEEeeccccc-------------cC-CCChhHHHHHHHHHHHHHHHHHcCC
Confidence 3 25678899999998 67888887765433210 00 2478999999999999999999999
Q ss_pred cEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCc-ceEecCccccHHHHHHHHHHcCCCcccccCCCC-CcHH
Q 012855 220 NRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEI-PVVLPLRDCLAQELNMLCQLDCLKTVELLNQTH-SGIN 297 (455)
Q Consensus 220 ~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v-~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~~-~Si~ 297 (455)
++|+||||.||++||+|+|+.+|.|..+...........+. .++|||+.+.++||..|+..++|||..+.++.. ...+
T Consensus 122 ~~i~tgH~~dD~~et~lm~l~~g~~~~~l~~~~~~~~~~~~~~~iRPL~~~~~~ei~~~~~~~~l~~~~d~~n~~~~~~R 201 (298)
T COG0037 122 DKIATGHHLDDQAETFLMNLLRGSGLRGLRGMPPKRPFEGGLLIIRPLLYVREKEIELYAKEKGLPYIEDESNYDLRYTR 201 (298)
T ss_pred CeEEeccCcHHHHHHHHHHHHcCcHhhHHhhCCcccccCCCCeeeeecccCCHHHHHHHHHHcCCCEeecCCCCCchhhH
Confidence 99999999999999999999999974311111111111233 699999999999999999999999998766522 2235
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHhHhhhCC
Q 012855 298 GLVSSFVKILQEENPSRESTIMRTAGKLTP 327 (455)
Q Consensus 298 ~l~~~fi~~Le~~~Pstv~tI~rT~~KL~~ 327 (455)
..++..+..++...|++..++.++.+....
T Consensus 202 ~~~r~~l~~~~~~~p~~~~~~~~~~~~~~~ 231 (298)
T COG0037 202 NRIREELLPLEEERPGLKFSLARAFELLRE 231 (298)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 678888888888889999999888887765
No 5
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=99.97 E-value=6.7e-30 Score=266.81 Aligned_cols=207 Identities=19% Similarity=0.172 Sum_probs=170.3
Q ss_pred CCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHh
Q 012855 78 LITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSN 157 (455)
Q Consensus 78 li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~ 157 (455)
.+.++++|+||||||+||++|||+|..+... .+++++.++|||||. ++.+ +++.+.++++|++
T Consensus 11 ~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~------------~~~~~l~a~hvnhgl-r~~s----~~~~~~~~~~~~~ 73 (436)
T PRK10660 11 QLLTSRQILVAFSGGLDSTVLLHLLVQWRTE------------NPGVTLRAIHVHHGL-SPNA----DSWVKHCEQVCQQ 73 (436)
T ss_pred hcCCCCeEEEEecCCHHHHHHHHHHHHHHHh------------cCCCeEEEEEEeCCC-Ccch----HHHHHHHHHHHHH
Confidence 4678899999999999999999999876421 137899999999995 5533 3567889999999
Q ss_pred hCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHH
Q 012855 158 LSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVIT 237 (455)
Q Consensus 158 l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~ 237 (455)
+ +++++++.++.. ....+.|+.+|..||.++...+.+. ++|++|||.||+|||+|+
T Consensus 74 l---~i~~~~~~~~~~-------------------~~~~~~e~~AR~~Ry~~~~~~~~~~--~~l~~aHh~DDq~ET~L~ 129 (436)
T PRK10660 74 W---QVPLVVERVQLD-------------------QRGLGIEAAARQARYQAFARTLLPG--EVLVTAQHLDDQCETFLL 129 (436)
T ss_pred c---CCcEEEEEEecc-------------------CCCCCHHHHHHHHHHHHHHHHHHhC--CEEEEcCchHHHHHHHHH
Confidence 8 799998876521 1135679999999999999988874 599999999999999999
Q ss_pred HHhccCCCCCCcccccccC--CCCcceEecCccccHHHHHHHHHHcCCCcccccCC--CCCcHHHHHHHHHHHHHHhCCC
Q 012855 238 ATVKGRGYSLPADIQYADA--RWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQ--THSGINGLVSSFVKILQEENPS 313 (455)
Q Consensus 238 nl~~GrG~sl~~~~~~~~~--~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~--~~~Si~~l~~~fi~~Le~~~Ps 313 (455)
++.+|.|. .+..++... ..++.++|||++++++||..|++.++|+|++++++ .....|.++.+.++.|++.||+
T Consensus 130 ~L~rG~g~--~gL~gm~~~~~~~~~~liRPLL~~~k~ei~~ya~~~~l~~~~D~sN~~~~~~RN~iR~~vlP~L~~~~p~ 207 (436)
T PRK10660 130 ALKRGSGP--AGLSAMAEVSPFAGTRLIRPLLARSREELEQYAQAHGLRWIEDDSNQDDRYDRNFLRLRVLPLLQQRWPH 207 (436)
T ss_pred HHHcCCCh--hhccccceecccCCCcEeCCCccCCHHHHHHHHHHcCCCEEECCCCCCCccccHHHHHHhhHHHHHhChH
Confidence 99999974 333333211 13678999999999999999999999999997754 4567788888999999999999
Q ss_pred hHHHHHHhHhhhCC
Q 012855 314 RESTIMRTAGKLTP 327 (455)
Q Consensus 314 tv~tI~rT~~KL~~ 327 (455)
+..++.||+..+..
T Consensus 208 ~~~~l~r~a~~~~~ 221 (436)
T PRK10660 208 FAEATARSAALCAE 221 (436)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 6
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.95 E-value=6.1e-27 Score=218.30 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=135.6
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
||+||+|||+||++||+++.++... .++++.+||||+|. .+.+ .+..+.++.+++.+ |+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~-------------~~~~v~~v~vd~g~-~~~~----~~~~~~~~~~~~~~---gi 59 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK-------------LKIRLIAAHVDHGL-RPES----DEEAEFVQQFCKKL---NI 59 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-------------cCCCEEEEEeCCCC-ChhH----HHHHHHHHHHHHHc---CC
Confidence 5999999999999999999886431 15679999999995 4321 34677899999998 78
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccC
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGR 243 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~Gr 243 (455)
+++++.++..... ....++.++.|+.+|+..|.++|+++|+++|++|||++|+++++|+++++|.
T Consensus 60 ~~~~~~~~~~~~~---------------~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~l~~~~~g~ 124 (189)
T TIGR02432 60 PLEIKKVDVKALA---------------KGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETILLRLLRGS 124 (189)
T ss_pred CEEEEEecchhhc---------------cccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHHcCC
Confidence 9998876421000 1124567899999999999999999999999999999999999999999998
Q ss_pred CCC-CCcccccccCC-CCcceEecCccccHHHHHHHHHHcCCCcccccCC
Q 012855 244 GYS-LPADIQYADAR-WEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQ 291 (455)
Q Consensus 244 G~s-l~~~~~~~~~~-~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~ 291 (455)
|.. +..... .... ++++++|||++++++||..|++.++||++.++++
T Consensus 125 ~~~~l~~~~~-~~~~~~~~~iirPL~~~~k~ei~~~~~~~~lp~~~~~~~ 173 (189)
T TIGR02432 125 GLRGLSGMKP-IRILGNGGQIIRPLLGISKSEIEEYLKENGLPWFEDETN 173 (189)
T ss_pred CcccccCCcc-ccccCCCCEEECCCCCCCHHHHHHHHHHcCCCeeeCCCC
Confidence 743 222111 1112 2789999999999999999999999999987664
No 7
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.95 E-value=1.5e-26 Score=214.20 Aligned_cols=179 Identities=22% Similarity=0.206 Sum_probs=140.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
||+|++|||+||++||+++.++... ...++++.++|||+|. ...+ +...+.++++++++ |+
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~-----------~~~~~~~~~~~~d~~~-~~~~----~~~~~~~~~~~~~~---~i 61 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRR-----------YPYGFELEALTVDEGI-PGYR----DESLEVVERLAEEL---GI 61 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhh-----------cCCCeEEEEEEEECCC-CCCc----HHHHHHHHHHHHHc---CC
Confidence 6999999999999999999876431 1136899999999985 3322 24567789999998 78
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccC
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGR 243 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~Gr 243 (455)
+++++.+.+.|.. .. ........++|.+|+.+|+.+|.++|+++|+++|++|||+||++|++|+++.+|+
T Consensus 62 ~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~et~l~~~~~g~ 131 (185)
T cd01993 62 ELEIVSFKEEYTD--------DI--EVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLLRGG 131 (185)
T ss_pred ceEEEehhhhcch--------hh--hhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHHhcC
Confidence 9999887654310 00 1112345678999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccc-ccCCCCcceEecCccccHHHHHHHHHHcCCCcccccCC
Q 012855 244 GYSLPADIQY-ADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQ 291 (455)
Q Consensus 244 G~sl~~~~~~-~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~ 291 (455)
|......... .....++.++|||++++++||..|++.++||++++.|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~iirPL~~~~k~eI~~~~~~~~l~~~~d~~~ 180 (185)
T cd01993 132 ILRLMRPGPILYLDEGDVTRIRPLVYVREKEIVLYAELNGLPFVEEECP 180 (185)
T ss_pred HHHHcCCCCccccCCCCceEEeecccCCHHHHHHHHHHcCCCcccCCCC
Confidence 8542221110 11234689999999999999999999999999987665
No 8
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.94 E-value=4.7e-26 Score=211.24 Aligned_cols=182 Identities=20% Similarity=0.193 Sum_probs=140.8
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
||+||+|||+||++|++++.++... .++++.+||||+|. ...+ .+..+.++++++.+ |+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~-------------~~~~v~~v~id~~~-~~~~----~~~~~~~~~~~~~~---~i 59 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR-------------LGLRLVAVHVDHGL-RPES----DEEAAFVADLCAKL---GI 59 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-------------cCCcEEEEEecCCC-CchH----HHHHHHHHHHHHHc---CC
Confidence 6999999999999999999876431 15789999999995 3321 24678889999988 68
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccC
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGR 243 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~Gr 243 (455)
+++++... +. .....+.|+.|+.+|+++|.++|+++|+++|++|||.||+++++|+++++|+
T Consensus 60 ~~~~~~~~--~~----------------~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l~~l~~g~ 121 (185)
T cd01992 60 PLYILVVA--LA----------------PKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLLRGS 121 (185)
T ss_pred cEEEEeec--cc----------------cCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHHHHccC
Confidence 88877211 11 1124567899999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcccccCC--CCCcHHHHHHHHH
Q 012855 244 GYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQ--THSGINGLVSSFV 304 (455)
Q Consensus 244 G~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~--~~~Si~~l~~~fi 304 (455)
|..............++.++|||++++++||..|++..|||+...+++ .....+.+..+++
T Consensus 122 ~~~~l~~~~~~~~~~~~~virPl~~~~k~eI~~~~~~~~l~~~~~~~~~~~~~~r~~~r~~~~ 184 (185)
T cd01992 122 GLRGLAGMPARIPFGGGRLIRPLLGITRAEIEAYLRENGLPWWEDPSNEDPRYTRNRIRHELL 184 (185)
T ss_pred CcccccCCCcccCCCCCeEECCCCCCCHHHHHHHHHHcCCCeEECCCCCCCcccHHHHHHhhC
Confidence 865333222222345789999999999999999999999999976554 2334455555443
No 9
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=218.14 Aligned_cols=249 Identities=17% Similarity=0.207 Sum_probs=204.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEE
Q 012855 52 EDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFV 131 (455)
Q Consensus 52 ~~~~~C~~CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~V 131 (455)
+.. +|..||-..++..|-.++.+++++.+|++|.++-|||+||+||.+++..+.. +..++.++.++-|
T Consensus 22 ~q~-~c~~cf~~~fe~e~~~ti~~n~l~~rge~v~igasGgkdstvlA~v~~~Ln~-----------r~~~g~~l~Lls~ 89 (347)
T KOG2840|consen 22 GQK-LCGACFWEGFEAEIHPTIVANKLFARGERVAIGASGGKDSTVLAYVLDALNE-----------RHDYGLRLFLLSI 89 (347)
T ss_pred hhH-HHhhhhhhcchhhhhhhHhccCccCCCCccccccccchhHHHHHHHHHHhhh-----------hcCCCceeeeeec
Confidence 445 9999999999999999999999999999999999999999999999998743 2346789999999
Q ss_pred eCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcC-CCCCHHHHHHHHHHHHH
Q 012855 132 DETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVS-DATGKEDLLLQLRMLSL 210 (455)
Q Consensus 132 D~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~-s~tsred~~~~lRr~lL 210 (455)
|+|+ .++- +.....++....++ ++|+.+++++++|+.- ..+++++.+- ...+-|.+|..+|++.|
T Consensus 90 degi-~gyr----d~sl~avkrn~~~~---~lPL~ivs~~dl~~~~------tmd~i~~~i~~~~rn~ctfCgv~RrqaL 155 (347)
T KOG2840|consen 90 DEGI-RGYR----DDSLEAVKRNGVQY---GLPLCIVSYKDLYGEW------TMDEIVSEIGQEIRNNCTFCGVFRRQAL 155 (347)
T ss_pred cccc-ccee----ccHHHHHHHhhhhc---CCceEEecHHHHhccc------hHHHHHHHHhhhhhcCceeecHHHHHHH
Confidence 9995 7763 23455667666776 7999999999998732 2444444332 23456899999999999
Q ss_pred HHHHHHcCCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccC--C-CCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 211 QKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADA--R-WEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 211 ~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~--~-~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
.+-|...|+..+++||++||.|+|+|+|+.+|.-..+...+..... . +.++..+||++.+++||..|+++..|.++.
T Consensus 156 ~~ga~~l~~~~~~tghnaDD~aetvl~n~lrgds~rl~R~~~~~t~~~e~~~~~r~kplk~~~~keivLya~~~~L~yFs 235 (347)
T KOG2840|consen 156 DRGADVLGAAELVTGHNADDWAETVLMNLLRGDSARLERLTEITTPSLEMGIIPRLKPLKYASEKEIVLYASLSKLRYFS 235 (347)
T ss_pred HhhccccchhhhhhcccchHHHHHHHHHHHHhHHHHhhhccccccCccccCccccccccccchhhehhhHHHHHHHHHHH
Confidence 9999999999999999999999999999998876555544433222 1 237889999999999999999999999887
Q ss_pred ccCC--CCCcHHHHHHHHHHHHHHhCCChHHHHHHhHhhhCC
Q 012855 288 LLNQ--THSGINGLVSSFVKILQEENPSRESTIMRTAGKLTP 327 (455)
Q Consensus 288 ~~~~--~~~Si~~l~~~fi~~Le~~~Pstv~tI~rT~~KL~~ 327 (455)
..|. ++. .+..-+.+|..|+..+|+++-.+.|..+.+..
T Consensus 236 ~eCv~ap~a-~rg~~r~~lk~le~~~P~~lmd~~rs~e~~~~ 276 (347)
T KOG2840|consen 236 TECVKAPGA-SRGDARILLKDLERERPRILMDYCRSGEFLEF 276 (347)
T ss_pred HhhccCCcc-hHHHHHHHhhhhhhhCchHHHHHHhhhHHHhh
Confidence 6653 444 45678889999999999999999999988875
No 10
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=99.88 E-value=7.3e-23 Score=173.83 Aligned_cols=95 Identities=38% Similarity=0.643 Sum_probs=87.2
Q ss_pred HHHHHHHHHhccCCCCCCcccccccCC--CCcceEecCccccHHHHHHHHHHcCCCccccc----------CCCCCcHHH
Q 012855 231 IACHVITATVKGRGYSLPADIQYADAR--WEIPVVLPLRDCLAQELNMLCQLDCLKTVELL----------NQTHSGING 298 (455)
Q Consensus 231 lAet~L~nl~~GrG~sl~~~~~~~~~~--~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~----------~~~~~Si~~ 298 (455)
||..+|+++++|||++++|++++.+.+ ++++++|||||++++||..|+++.+++.+... ...+.||++
T Consensus 1 LA~~~Ls~~~kGRG~sl~~~~~~~~~~~~~~i~~~rPLRd~l~kEi~~Y~~~~~l~~~~~~~~~~~~~~~~~~~~~SI~~ 80 (107)
T PF10288_consen 1 LAIKTLSNVAKGRGFSLPWQVSDGDSRNGWDIKIIRPLRDLLKKEIAFYNRLCGLESVLVPSLDTDSSQSKSSKNMSINE 80 (107)
T ss_pred CHHHHHHHHHcCCceecchHHhCCcccCCCCceEEeehHhCCHHHHHHHHHHhCcchhhcccccccccccccCcCCCHHH
Confidence 589999999999999999999999999 79999999999999999999999999844321 236789999
Q ss_pred HHHHHHHHHHHhCCChHHHHHHhHhhh
Q 012855 299 LVSSFVKILQEENPSRESTIMRTAGKL 325 (455)
Q Consensus 299 l~~~fi~~Le~~~Pstv~tI~rT~~KL 325 (455)
++++||..||++||+|++||+||++||
T Consensus 81 L~~~fi~~Le~~ypstvsTV~RT~~KL 107 (107)
T PF10288_consen 81 LTEDFIDNLEENYPSTVSTVVRTADKL 107 (107)
T ss_pred HHHHHHHHHhCcCcchHhHHHHHhhcC
Confidence 999999999999999999999999997
No 11
>PRK08349 hypothetical protein; Validated
Probab=99.86 E-value=1e-20 Score=178.06 Aligned_cols=182 Identities=15% Similarity=0.109 Sum_probs=130.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCC-CC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSP-PT 162 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~-~~ 162 (455)
|++|++|||+||+|+++++... +|++.++|+|++. ...+.++++++.++. -+
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~-----------------g~~v~av~~d~~~----------~~~~~~~~~~~~l~~~~~ 54 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRR-----------------GVEVYPVHFRQDE----------KKEEKVRELVERLQELHG 54 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHc-----------------CCeEEEEEEeCCH----------HHHHHHHHHHHHHHHhcC
Confidence 7899999999999999988753 7899999999742 112333333333310 04
Q ss_pred CcE---EEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHH
Q 012855 163 KEL---HVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITAT 239 (455)
Q Consensus 163 i~~---~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl 239 (455)
+++ +++++.+.... .+..+.+ ......+|..|+.+++.++..+|.++|+++|++|||.+|.|+++++|+
T Consensus 55 ~~~~~~~~v~~~~~~~~-------~~~~~~~-~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a~~~l~nl 126 (198)
T PRK08349 55 GKLKDPVVVDAFEEQGP-------VFEKLRE-LKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVASQTLDNL 126 (198)
T ss_pred CCcceEEEEcchHHhHH-------HHHHHHh-hCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHH
Confidence 553 55554332111 1222222 123457899999999999999999999999999999999999999998
Q ss_pred hccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcc----cccCC------CCCcHHHHHHHHHHHHHH
Q 012855 240 VKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTV----ELLNQ------THSGINGLVSSFVKILQE 309 (455)
Q Consensus 240 ~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~----~~~~~------~~~Si~~l~~~fi~~Le~ 309 (455)
..+.. ..+++++|||..++++||..|++..|++.+ ...|+ ...+....+++|+..||+
T Consensus 127 ~~~~~------------~~~i~i~rPL~~~~K~eI~~~a~~~g~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
T PRK08349 127 MVIST------------ATDLPVLRPLIGLDKEEIVKIAKEIGTFEISIEPEPPCPFVPKYPVVRASLGEFEKILEEVYV 194 (198)
T ss_pred hcccc------------ccCCeEEcCCCCCCHHHHHHHHHHcCChhhhhCCCCCCcCCCCCCcCCCCHHHHHHHHHHHhc
Confidence 75321 124789999999999999999999996544 22243 223456778899999988
Q ss_pred hCC
Q 012855 310 ENP 312 (455)
Q Consensus 310 ~~P 312 (455)
.-|
T Consensus 195 ~~~ 197 (198)
T PRK08349 195 LGP 197 (198)
T ss_pred cCC
Confidence 766
No 12
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.85 E-value=6.5e-21 Score=193.80 Aligned_cols=202 Identities=16% Similarity=0.158 Sum_probs=145.9
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCC----CchhHHHHHHHHHHHHhhC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVP----SSEIDNAIQEIKLIVSNLS 159 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s----~~e~~~~~~~v~~~~~~l~ 159 (455)
||+||+|||+||++++++|.+. ++++.++||+++. .+.. .....++.+.++++|+++
T Consensus 2 kVlValSGGvDSsvla~lL~~~-----------------G~~V~~v~~~~~~-~~~~~~~~~~~s~~d~~~a~~~a~~L- 62 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQ-----------------GYEVIGVFMKLWD-DDDETGKGGCCAEEDIADARRVADKL- 62 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHc-----------------CCcEEEEEEeCCC-cccccccCCcCcHHHHHHHHHHHHHc-
Confidence 7999999999999999999753 6789999999863 2100 000134667899999998
Q ss_pred CCCCcEEEEeccccccCCCCChhHHHHHHHhhcC--CCCCHHHHHHH-HHHHHHHHHHHHcCCcEEEcccchhHHHHHHH
Q 012855 160 PPTKELHVIPIESIFCSNPCDGRERFKKLVDSVS--DATGKEDLLLQ-LRMLSLQKFASENGYNRLLLGLCTSRIACHVI 236 (455)
Q Consensus 160 ~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~--s~tsred~~~~-lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L 236 (455)
+++++++++.+.|.. +-+..+++... ....+|..|.. +|+.+|.++|+++|+++|++||+++|++++
T Consensus 63 --gIp~~vvd~~~~f~~------~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~~~-- 132 (346)
T PRK00143 63 --GIPHYVVDFEKEFWD------RVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRDGR-- 132 (346)
T ss_pred --CCcEEEEeCHHHHHH------HHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccccc--
Confidence 799999998765532 12223333221 22367999998 689999999999999999999999999977
Q ss_pred HHHhccCCCCCCcccccc---cCC-CCcceEecCccccHHHHHHHHHHcCCCcccccCCCC--CcHHHHHHHHHHHHHHh
Q 012855 237 TATVKGRGYSLPADIQYA---DAR-WEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTH--SGINGLVSSFVKILQEE 310 (455)
Q Consensus 237 ~nl~~GrG~sl~~~~~~~---~~~-~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~~--~Si~~l~~~fi~~Le~~ 310 (455)
++.+|.+. ..+..+. ... ...++|+||.+++++||..||+.++|++...+++.. ...+.-.++||..++..
T Consensus 133 -~L~rg~d~--~kDqsy~l~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~icf~~~~~~~~fl~~~~~~ 209 (346)
T PRK00143 133 -ELLRGVDP--NKDQSYFLYQLTQEQLAKLLFPLGELTKPEVREIAEEAGLPVAKKKDSQGICFIGERDYRDFLKRYLPA 209 (346)
T ss_pred -eEEEccCC--CcChhhhhccCCHHHhcceeccCccCCHHHHHHHHHHcCCCcCCCCCCCcccCCCchhHHHHHHHhccc
Confidence 78887653 2222111 011 124799999999999999999999999886555431 12234578888888777
Q ss_pred CCChHHH
Q 012855 311 NPSREST 317 (455)
Q Consensus 311 ~Pstv~t 317 (455)
.|+.+-+
T Consensus 210 ~pG~~~~ 216 (346)
T PRK00143 210 QPGEIVD 216 (346)
T ss_pred CCCCEEc
Confidence 8886544
No 13
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.82 E-value=4.3e-20 Score=183.20 Aligned_cols=165 Identities=21% Similarity=0.191 Sum_probs=120.4
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
||+||+|||+||++|++++++.. +.++.+||||+|..+. ...+.+++++++++ ++
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l----------------G~~v~aV~vd~g~~~~-------~E~~~~~~~~~~~g--~i 55 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI----------------GDRLTCVFVDNGLLRK-------NEAERVEELFSKLL--GI 55 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh----------------CCcEEEEEecCCCCCh-------HHHHHHHHHHHHhC--CC
Confidence 68999999999999999998631 4578999999996321 24577899998873 35
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcC-CcEEEcccchhHHHHHHHHHHhcc
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENG-YNRLLLGLCTSRIACHVITATVKG 242 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g-~~~l~lGh~~ddlAet~L~nl~~G 242 (455)
++++++..+.|-. . +..+.+...++.+|+..++.++.++|+++| +++|++|||.||++|+..++...+
T Consensus 56 ~~~vvd~~e~fl~----------~-l~~v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~~ 124 (295)
T cd01997 56 NLIVVDASERFLS----------A-LKGVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSAD 124 (295)
T ss_pred cEEEEcCcHHHHH----------H-hcCCCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccccc
Confidence 9998887643211 0 111222234566788899999999999999 999999999999999977544211
Q ss_pred CCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 243 RGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 243 rG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
.-.+.....+. ....++.+++||++++|+||..|++..|||+
T Consensus 125 ~IKs~~n~~Gl-~a~~~~~vi~PL~~l~K~EVR~lar~lGLp~ 166 (295)
T cd01997 125 TIKSHHNVGGL-PEDMKLKLIEPLRDLFKDEVRELGRELGLPE 166 (295)
T ss_pred ccccccccccc-chHhhCCcccccccCcHHHHHHHHHHcCCCc
Confidence 11111111111 1123578999999999999999999999997
No 14
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.82 E-value=1.8e-19 Score=180.21 Aligned_cols=175 Identities=20% Similarity=0.224 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCC
Q 012855 61 FRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVP 140 (455)
Q Consensus 61 F~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s 140 (455)
|++....++++.++ +++|+||+|||+||++|++++++.. +.++.+||||+|. .+.
T Consensus 2 ~~~~~~~~l~~~v~-------~~kVvValSGGVDSsvla~ll~~~~----------------G~~v~av~vd~G~-~~~- 56 (311)
T TIGR00884 2 FIEEAVEEIREQVG-------DAKVIIALSGGVDSSVAAVLAHRAI----------------GDRLTCVFVDHGL-LRK- 56 (311)
T ss_pred hHHHHHHHHHHHhC-------CCcEEEEecCChHHHHHHHHHHHHh----------------CCCEEEEEEeCCC-CCh-
Confidence 44444555555442 3799999999999999999997641 5689999999996 321
Q ss_pred CchhHHHHHHHHHHHH-hhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcC-
Q 012855 141 SSEIDNAIQEIKLIVS-NLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENG- 218 (455)
Q Consensus 141 ~~e~~~~~~~v~~~~~-~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g- 218 (455)
...+.+.+.+. ++ |++++++++.+.|-. . +..+.....++.+|...++.++.++|+++|
T Consensus 57 -----~E~e~~~~~~~~~l---gi~~~vvd~~e~fl~----------~-l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~ 117 (311)
T TIGR00884 57 -----GEAEQVVKTFGDRL---GLNLVYVDAKERFLS----------A-LKGVTDPEEKRKIIGRVFIEVFEREAKKIGD 117 (311)
T ss_pred -----HHHHHHHHHHHHHc---CCcEEEEeCcHHHHh----------h-hcCCCChHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 23345555544 66 799999988754311 0 111222334567788888999999999999
Q ss_pred CcEEEcccchhHHHHHHHHHHhccCCCCC---CcccccccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 219 YNRLLLGLCTSRIACHVITATVKGRGYSL---PADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 219 ~~~l~lGh~~ddlAet~L~nl~~GrG~sl---~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
+++|++|||.+|++++.+ |....+ ....++ .....+.+++||++++|+||..|++..|||+
T Consensus 118 ~~~la~Gt~~dD~~Es~~-----G~~~~iks~~~~~gl-~~~~~~~ii~PL~~l~K~EVr~la~~lgLp~ 181 (311)
T TIGR00884 118 AEYLAQGTIYPDVIESAA-----GTAHVIKSHHNVGGL-PEDMKLKLVEPLRELFKDEVRKLGKELGLPE 181 (311)
T ss_pred CCEEEECCCChhhhhhcc-----ChhHhhhccCccccC-ChhhcCceEEEcccCcHHHHHHHHHHcCCCH
Confidence 999999999999999875 321111 111111 1123567999999999999999999999994
No 15
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.81 E-value=1.3e-19 Score=192.89 Aligned_cols=165 Identities=19% Similarity=0.194 Sum_probs=120.0
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHH-HHHHhhCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIK-LIVSNLSP 160 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~-~~~~~l~~ 160 (455)
+++|+||+|||+||++||+++++.. ++++.+||||+|..+. ...+.+. .+++++
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~l----------------g~~v~av~vd~g~~~~-------~e~~~~~~~~a~~l-- 269 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKAI----------------GDQLTCVFVDHGLLRK-------NEAEQVMEMFREHF-- 269 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHh----------------CCceEEEEEeCCCCCH-------HHHHHHHHHHHHHc--
Confidence 3799999999999999999998641 5689999999996321 1234444 456777
Q ss_pred CCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCcEEEcccchhHHHHHHHHHH
Q 012855 161 PTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASEN-GYNRLLLGLCTSRIACHVITAT 239 (455)
Q Consensus 161 ~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~-g~~~l~lGh~~ddlAet~L~nl 239 (455)
|++++++++++.|.. . +........++.+|....+.+|.++|+++ |+++|++|||.||++|+.+++
T Consensus 270 -gi~~~vvd~~~~f~~----------~-l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~- 336 (511)
T PRK00074 270 -GLNLIHVDASDRFLS----------A-LAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVIESGGTK- 336 (511)
T ss_pred -CCcEEEEccHHHHHH----------h-ccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchhhhhcCCC-
Confidence 799999987654311 1 11122233456777888899999999999 999999999999999998765
Q ss_pred hccCCCCCCccccc--ccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 240 VKGRGYSLPADIQY--ADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 240 ~~GrG~sl~~~~~~--~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
++..+....+. ........++|||++++|+||..|++..|||+..
T Consensus 337 ---~~~~ik~~~~l~Gl~~~~~~~ii~PL~~l~K~EIr~~a~~~gLp~~~ 383 (511)
T PRK00074 337 ---KAATIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKLGLELGLPEEI 383 (511)
T ss_pred ---CccccccccCccCcChhHhcccccchhhcCHHHHHHHHHHcCCCHHH
Confidence 22223221111 0111246799999999999999999999999543
No 16
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.80 E-value=3.1e-18 Score=158.21 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=116.9
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
+|+|++|||+||+++++++.+. ++++.++|||++. ... ++.......+.+....++ .++
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~-----------------g~~v~av~~d~g~-~~~--~~~~~~~~~~~~~~~~~~-~~~ 59 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR-----------------GIEVDALHFNSGP-FTS--EKAREKVEDLARKLARYS-PGH 59 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc-----------------CCeEEEEEEeCCC-CCc--hHHHHHHHHHHHHHHHhC-CCC
Confidence 5899999999999999999753 7899999999985 322 111122334444445552 123
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccC
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGR 243 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~Gr 243 (455)
..+++++.+. -...... ......+|..|+.+++.++..+|+++|+++|++|||.+|.+++.+.++..+.
T Consensus 60 ~~~~v~~~~~----------~~~~~~~-~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~~~~ 128 (177)
T cd01712 60 KLVVIIFTFF----------VQKEIYG-YGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLLVIS 128 (177)
T ss_pred ceEEEeCcHH----------HHHHHHH-hCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHHhhhhcc
Confidence 3344543320 0111111 1234578999999999999999999999999999999999999998876432
Q ss_pred CCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 244 GYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 244 G~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
...+++++|||..++++||..|++..||+.+.
T Consensus 129 ------------~~~~~~i~rPl~~~~K~eI~~~a~~~gl~~~~ 160 (177)
T cd01712 129 ------------SGTDLPILRPLIGFDKEEIIGIARRIGTYDIS 160 (177)
T ss_pred ------------cCCCCeEECCCCCCCHHHHHHHHHHcCCccee
Confidence 12358999999999999999999999998775
No 17
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.79 E-value=9.4e-19 Score=178.28 Aligned_cols=176 Identities=17% Similarity=0.186 Sum_probs=126.0
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCC-CCchhHHHHHHHHHHHHhhCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPV-PSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~-s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
+|+||+|||+||++++++|.+. ++++.++|++++..... .....+...+.++++|+.+ |
T Consensus 1 kVlValSGGvDSsvla~lL~~~-----------------g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~l---g 60 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ-----------------GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQL---G 60 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc-----------------CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHh---C
Confidence 5999999999999999999753 67899999998632100 0001134667899999998 7
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHhhcC--CCCCHHHHHHH-HHHHHHHHHHHHcCCcEEEcccchhHHHHH-HHHH
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVDSVS--DATGKEDLLLQ-LRMLSLQKFASENGYNRLLLGLCTSRIACH-VITA 238 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~--s~tsred~~~~-lRr~lL~~~A~~~g~~~l~lGh~~ddlAet-~L~n 238 (455)
++++++++.+.|.. +-+..+++... ...++|.+|.. +|+.+|.++|+++|+++|++||+++|..++ ....
T Consensus 61 I~~~vvd~~~~f~~------~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~ 134 (349)
T cd01998 61 IPHYVVNFEKEYWE------KVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYR 134 (349)
T ss_pred CcEEEEECcHHHHH------HHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceE
Confidence 99999988764421 11222333221 22457999988 589999999999999999999999998876 5555
Q ss_pred HhccCCCCCCccccccc----CCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 239 TVKGRGYSLPADIQYAD----ARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 239 l~~GrG~sl~~~~~~~~----~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
+.+|.. ...+..|.- .....++++||.+++++||..||+..||+...
T Consensus 135 l~rg~d--~~kdqsy~L~~~~~~~l~~ii~PL~~~~K~eVr~~A~~~gl~~~~ 185 (349)
T cd01998 135 LLRGVD--PNKDQSYFLSQLSQEQLSRLIFPLGDLTKPEVREIAKELGLPVAK 185 (349)
T ss_pred EeecCC--CCCCcceEeccCCHHHHhheeecCCCCCHHHHHHHHHHcCCCCCC
Confidence 666654 222222110 01125799999999999999999999999664
No 18
>PRK00919 GMP synthase subunit B; Validated
Probab=99.77 E-value=5e-18 Score=168.99 Aligned_cols=161 Identities=21% Similarity=0.223 Sum_probs=117.8
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+++|+||||||+||++|++++++.. ++++.+||||+|.. + ....+.++++++++
T Consensus 21 ~~kVlVa~SGGVDSsvla~la~~~l----------------G~~v~aV~vD~G~~-~------~~E~e~a~~~~~~~--- 74 (307)
T PRK00919 21 DGKAIIALSGGVDSSVAAVLAHRAI----------------GDRLTPVFVDTGLM-R------KGETERIKETFSDM--- 74 (307)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHh----------------CCeEEEEEEECCCC-C------HHHHHHHHHHHhcc---
Confidence 3799999999999999999998631 67899999999963 2 13567788888763
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhc
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVK 241 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~ 241 (455)
++++++++.+.|- .. +..+.....++.+|+.+++.++.++|+++|+++|++|||.+|++++ +
T Consensus 75 -i~~~vvd~~e~fl----------~~-L~~v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~------r 136 (307)
T PRK00919 75 -LNLRIVDAKDRFL----------DA-LKGVTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIES------E 136 (307)
T ss_pred -CCcEEEECCHHHH----------Hh-ccCCCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhc------c
Confidence 5677777654321 00 1112233446788888999999999999999999999999999887 2
Q ss_pred cCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 242 GRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 242 GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
|.-.+.....+. ....++.+++||++++++||..|++..|||+..
T Consensus 137 ~~iks~~nv~gl-~~~~~~~Ii~PL~~l~K~EVr~la~~lGLp~~~ 181 (307)
T PRK00919 137 GGIKSHHNVGGL-PEGMVLKIVEPLRDLYKDEVREVARALGLPEEI 181 (307)
T ss_pred Cccccccccccc-ChhhcCCcccCchhCcHHHHHHHHHHcCCChhh
Confidence 211111111111 122356799999999999999999999999763
No 19
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.77 E-value=5.5e-18 Score=172.59 Aligned_cols=176 Identities=16% Similarity=0.144 Sum_probs=126.5
Q ss_pred CCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHh
Q 012855 78 LITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSN 157 (455)
Q Consensus 78 li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~ 157 (455)
|+.++++|+||+|||+||++++++|.+. ++++.++|++... ...+ .+..+.++++|++
T Consensus 1 ~~~~~~kVlValSGGVDSsvaa~LL~~~-----------------G~~V~~v~~~~~~-~~~~----~~d~~~a~~va~~ 58 (360)
T PRK14665 1 MMEKNKRVLLGMSGGTDSSVAAMLLLEA-----------------GYEVTGVTFRFYE-FNGS----TEYLEDARALAER 58 (360)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHHc-----------------CCeEEEEEEecCC-CCCC----hHHHHHHHHHHHH
Confidence 6788999999999999999999999753 6899999999652 1111 2456788999999
Q ss_pred hCCCCCcEEEEeccccccCCCCChhHHHHHHHhhc--CCCCCHHHHHHH-HHHHHHHHHHHHcCCcEEEcccchhHHHHH
Q 012855 158 LSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSV--SDATGKEDLLLQ-LRMLSLQKFASENGYNRLLLGLCTSRIACH 234 (455)
Q Consensus 158 l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~--~s~tsred~~~~-lRr~lL~~~A~~~g~~~l~lGh~~ddlAet 234 (455)
+ |++++++++.+.|... -.+.+.+.. ....++|..|+. +|+.+|.++|+++|+++|++||++.....+
T Consensus 59 L---gIp~~vvd~~~~f~~~------v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~~~ 129 (360)
T PRK14665 59 L---GIGHITYDARKVFRKQ------IIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQWID 129 (360)
T ss_pred h---CCCEEEEecHHHHHHH------HHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceeccC
Confidence 8 7999999887655321 112222222 123478999998 678999999999999999999998765433
Q ss_pred HHHHHhccCCCCCCcccccccCCC--C--cceEecCccccHHHHHHHHHHcCCCcc
Q 012855 235 VITATVKGRGYSLPADIQYADARW--E--IPVVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 235 ~L~nl~~GrG~sl~~~~~~~~~~~--~--v~iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
-+..+.+|.. ...+..|....- + -+++|||.++.|+||..+|+..|++.+
T Consensus 130 ~~~~l~~g~D--~~kDQSyfL~~l~~~~l~~~ifPLg~~~K~eVr~~A~~~gl~~~ 183 (360)
T PRK14665 130 GNYYITPAED--VDKDQSFFLWGLRQEILQRMLLPMGGMTKSEARAYAAERGFEKV 183 (360)
T ss_pred CcEEEEeecC--CCCCceEEecCCCHHHHhheeccCcCCCHHHHHHHHHHCCCCcc
Confidence 2222333332 333333322221 1 367999999999999999999998544
No 20
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.76 E-value=5e-18 Score=160.02 Aligned_cols=150 Identities=22% Similarity=0.190 Sum_probs=114.7
Q ss_pred EEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCc
Q 012855 85 VLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKE 164 (455)
Q Consensus 85 VLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~ 164 (455)
|+||+|||+||+++++++.+.. +.++.++|||+|. . + ....+.++++|+++ |++
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~----------------~~~v~~v~vd~g~-~--~----~~~~~~~~~~a~~l---gi~ 54 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL----------------GDRVLAVTATSPL-F--P----RRELEEAKRLAKEI---GIR 54 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh----------------CCcEEEEEeCCCC-C--C----HHHHHHHHHHHHHc---CCc
Confidence 6899999999999999997641 2378899999984 2 1 24677899999998 799
Q ss_pred EEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccCC
Q 012855 165 LHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRG 244 (455)
Q Consensus 165 ~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~GrG 244 (455)
++++++...... . +. .....+|..|+.+++..+.++|+++|+++|++|||.||+++.. .|
T Consensus 55 ~~~~~~~~~~~~----------~-~~--~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~-------~~ 114 (202)
T cd01990 55 HEVIETDELDDP----------E-FA--KNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYR-------PG 114 (202)
T ss_pred EEEEeCCccccH----------H-Hh--cCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccC-------hH
Confidence 999987642110 1 11 1224567899999999999999999999999999999998731 01
Q ss_pred CCCCcccccccCCCCcceEecCc--cccHHHHHHHHHHcCCCccccc
Q 012855 245 YSLPADIQYADARWEIPVVLPLR--DCLAQELNMLCQLDCLKTVELL 289 (455)
Q Consensus 245 ~sl~~~~~~~~~~~~v~iiRPLr--dl~~kEI~~Y~~~~~L~~~~~~ 289 (455)
+ .. ..++.++|||+ .++++||..|++..||+++..+
T Consensus 115 --~---~~----~~~~~iirPL~~~~~~K~ei~~~a~~~gl~~~~~~ 152 (202)
T cd01990 115 --L---KA----LRELGVRSPLAEAGLGKAEIRELARELGLPTWDKP 152 (202)
T ss_pred --H---HH----HHHcCCcCchhhcCCCHHHHHHHHHHcCCCCcCCC
Confidence 1 00 01267999999 5999999999999999996543
No 21
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.75 E-value=4e-17 Score=167.05 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=120.9
Q ss_pred CCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhh
Q 012855 79 ITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNL 158 (455)
Q Consensus 79 i~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l 158 (455)
+.-+.|+||++|||.||.|++++|.+. ++++.+||+|.+. ...+.++++++.+
T Consensus 177 vGs~gkvlvllSGGiDSpVAa~ll~kr-----------------G~~V~~v~f~~g~----------~~~e~v~~la~~L 229 (381)
T PRK08384 177 IGTQGKVVALLSGGIDSPVAAFLMMKR-----------------GVEVIPVHIYMGE----------KTLEKVRKIWNQL 229 (381)
T ss_pred cCCCCcEEEEEeCChHHHHHHHHHHHc-----------------CCeEEEEEEEeCH----------HHHHHHHHHHHHh
Confidence 344579999999999999999999863 8999999998761 2456788888877
Q ss_pred CCC----CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHH
Q 012855 159 SPP----TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACH 234 (455)
Q Consensus 159 ~~~----~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet 234 (455)
+.+ .++++++++.+. +.+...+........+|.+|+.++++++.++|+++|+++|++||+++++|++
T Consensus 230 ~~~~~~~~i~l~~v~~~~~---------~~v~~~i~~~~~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqvaSQ 300 (381)
T PRK08384 230 KKYHYGGKAELIVVKPQER---------ERIIQKLKELKKENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVASQ 300 (381)
T ss_pred cccccCCcceEEEEChHHH---------HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHHHH
Confidence 421 256777765320 0122222222234468999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcC-CC
Q 012855 235 VITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDC-LK 284 (455)
Q Consensus 235 ~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~-L~ 284 (455)
+|.|+.. + ....+++++|||..+.+.||..||+..| ++
T Consensus 301 tl~Nl~~---------i---~~~~~lpilRPLi~~dK~EIi~~Ar~iGT~~ 339 (381)
T PRK08384 301 TLENMYI---------V---SQASDLPIYRPLIGMDKEEIVAIAKTIGTFE 339 (381)
T ss_pred HHHHHHH---------H---hccCCCcEEeeCCCCCHHHHHHHHHHcCCcc
Confidence 9999832 1 1112468999999999999999999998 54
No 22
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.72 E-value=3.8e-17 Score=148.13 Aligned_cols=164 Identities=20% Similarity=0.143 Sum_probs=123.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
+|+|++|||+||+|||+++.+... + ..++.++|+|+|. . . .+..+.++++++.+ |+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~-----------~---~~~~~~v~~dtg~-~-~-----~~~~~~~~~~~~~~---g~ 56 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALP-----------E---LKPVPVIFLDTGY-E-F-----PETYEFVDRVAERY---GL 56 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcc-----------c---ccCceEEEeCCCC-C-C-----HHHHHHHHHHHHHh---CC
Confidence 589999999999999999987521 0 1478899999985 2 1 24677889999988 78
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccC
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGR 243 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~Gr 243 (455)
+++++.....+... .............+.+..|+.+|+..+.+++++.+.+.+++||+.||.+++.+++...
T Consensus 57 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~r~~~~~~~-- 128 (173)
T cd01713 57 PLVVVRPPDSPAEG------LALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARRALLPVVW-- 128 (173)
T ss_pred CeEEECCCccHHHH------HHHhhhccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchhhhhCcccc--
Confidence 88887665322100 0000011112345678889999999999999999999999999999999999987651
Q ss_pred CCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcccc
Q 012855 244 GYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVEL 288 (455)
Q Consensus 244 G~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~ 288 (455)
......++.+++||.+.+++||..|++.++|++...
T Consensus 129 ---------~~~~~~~~~~~~Pl~~w~~~di~~~~~~~~l~~~~l 164 (173)
T cd01713 129 ---------TDDGKGGILKVNPLLDWTYEDVWAYLARHGLPYNPL 164 (173)
T ss_pred ---------ccCCCCCcEEEcchhcCCHHHHHHHHHHcCCCCCHH
Confidence 011224578999999999999999999999988653
No 23
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.72 E-value=1.3e-17 Score=169.48 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=122.2
Q ss_pred CCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHh
Q 012855 78 LITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSN 157 (455)
Q Consensus 78 li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~ 157 (455)
|+.++++|+||+|||+||++++++|++. ++++.++|++.. . ...+.++++|++
T Consensus 1 ~~~~~~kVlVa~SGGvDSsv~a~lL~~~-----------------G~eV~av~~~~~--~--------~e~~~a~~va~~ 53 (362)
T PRK14664 1 MKESKKRVLVGMSGGIDSTATCLMLQEQ-----------------GYEIVGVTMRVW--G--------DEPQDARELAAR 53 (362)
T ss_pred CCCCCCEEEEEEeCCHHHHHHHHHHHHc-----------------CCcEEEEEecCc--c--------hhHHHHHHHHHH
Confidence 5678899999999999999999988642 688999999752 1 123468899999
Q ss_pred hCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcC--CCCCHHHHHHH-HHHHHHHHHHHHcCCcEEEcccchhHHHHH
Q 012855 158 LSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVS--DATGKEDLLLQ-LRMLSLQKFASENGYNRLLLGLCTSRIACH 234 (455)
Q Consensus 158 l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~--s~tsred~~~~-lRr~lL~~~A~~~g~~~l~lGh~~ddlAet 234 (455)
+ |++++++++.+.|.. +.+..+++... ...++|.+|+. +|+.+|.++|+++|+++|++||++......
T Consensus 54 L---GI~~~vvd~~~~f~~------~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~~~ 124 (362)
T PRK14664 54 M---GIEHYVADERVPFKD------TIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEERN 124 (362)
T ss_pred h---CCCEEEEeChHHHHH------HHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccccCC
Confidence 8 799999998765532 11222333221 22468999995 589999999999999999999999654322
Q ss_pred HHHHHhccCCCCCCcccccccCC--CC--cceEecCccccHHHHHHHHHHcCCCcc
Q 012855 235 VITATVKGRGYSLPADIQYADAR--WE--IPVVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 235 ~L~nl~~GrG~sl~~~~~~~~~~--~~--v~iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
-..++++|.. ...+..+.-.. .+ -++|+||.++++.||..||+.+||+..
T Consensus 125 ~~~~l~~g~D--~~kDQsyfl~~l~~~~l~~~ifPLg~~~K~evr~~A~~~gl~~~ 178 (362)
T PRK14664 125 GHIYIVAGDD--DKKDQSYFLWRLGQDILRRCIFPLGNYTKQTVREYLREKGYEAK 178 (362)
T ss_pred CeEEEEEcCC--CcchHHHHHHhcCHHHHhHHhccCccCCHHHHHHHHHHcCCCCC
Confidence 2334444443 22222221111 11 268999999999999999999999873
No 24
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=99.71 E-value=2.1e-16 Score=162.32 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=121.7
Q ss_pred CCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHh
Q 012855 78 LITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSN 157 (455)
Q Consensus 78 li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~ 157 (455)
.+..++|+||++|||.||+|+++++.+. ++++.++|+|.+. ..+ ++..+.++.+++.
T Consensus 168 P~g~~~kvlvllSGGiDS~vaa~ll~kr-----------------G~~V~av~~~~~~---~~~---~~~~~~v~~l~~~ 224 (371)
T TIGR00342 168 PVGTQGKVLALLSGGIDSPVAAFMMMKR-----------------GCRVVAVHFFNEP---AAS---EKAREKVERLANS 224 (371)
T ss_pred CcCcCCeEEEEecCCchHHHHHHHHHHc-----------------CCeEEEEEEeCCC---Ccc---HHHHHHHHHHHHH
Confidence 4566789999999999999999999653 7899999999663 221 2456677888877
Q ss_pred hCCC--CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHH
Q 012855 158 LSPP--TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHV 235 (455)
Q Consensus 158 l~~~--~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~ 235 (455)
+..+ +++++++++.+.+ ..+.... ....+|-.|+.+++.++..+|.++||++|++|||.+|.|+++
T Consensus 225 l~~~~~~~~l~~v~~~~~~-----------~~i~~~~-~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqt 292 (371)
T TIGR00342 225 LNETGGSVKLYVFDFTDVQ-----------EEIIHII-PEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQT 292 (371)
T ss_pred HhhcCCCceEEEEeCHHHH-----------HHHHhcC-CCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccH
Confidence 6422 3577778765432 2222211 224579999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCC
Q 012855 236 ITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCL 283 (455)
Q Consensus 236 L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L 283 (455)
|.|+.- +. ...+++++|||..+++.||..|++..|+
T Consensus 293 l~nl~~-----i~-------~~~~~~I~rPLi~~~K~EIi~~a~~iG~ 328 (371)
T TIGR00342 293 LENLRV-----IQ-------AVSNTPILRPLIGMDKEEIIELAKEIGT 328 (371)
T ss_pred HHHHHH-----Hh-------ccCCCCEEeCCCCCCHHHHHHHHHHhCC
Confidence 998731 10 1124679999999999999999999985
No 25
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.71 E-value=3.2e-17 Score=166.93 Aligned_cols=174 Identities=16% Similarity=0.232 Sum_probs=117.6
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCC---CCCCchhHHHHHHHHHHHHhhCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYY---PVPSSEIDNAIQEIKLIVSNLSP 160 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~---~~s~~e~~~~~~~v~~~~~~l~~ 160 (455)
+|+||+|||+||++++++|.+. ++++.++|++..... .+..-..++..+.++++|+.+
T Consensus 2 kVlValSGGvDSsv~a~lL~~~-----------------G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~l-- 62 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQ-----------------GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKL-- 62 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHc-----------------CCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHc--
Confidence 7999999999999999999763 689999999643110 000000124567889999998
Q ss_pred CCCcEEEEeccccccCCCCChhHHHHHHHhhcC--CCCCHHHHHHHH-HHHHHHHHHHHc-CCcEEEcccchh---HHHH
Q 012855 161 PTKELHVIPIESIFCSNPCDGRERFKKLVDSVS--DATGKEDLLLQL-RMLSLQKFASEN-GYNRLLLGLCTS---RIAC 233 (455)
Q Consensus 161 ~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~--s~tsred~~~~l-Rr~lL~~~A~~~-g~~~l~lGh~~d---dlAe 233 (455)
|++++++++.+.|... -+..+++... ...++|.+|... |+..|.++|++. |+++|++||+++ |...
T Consensus 63 -gIp~~vid~~~~f~~~------v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~~ 135 (352)
T TIGR00420 63 -GIPLEKVNFQKEYWNK------VFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGK 135 (352)
T ss_pred -CCCEEEEECHHHHHHH------HHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCCc
Confidence 7999999987654211 1122233321 234689999876 579999999996 999999999994 4332
Q ss_pred HHHHHHhccCCCCCCcccccc----cCCCCcceEecCccccHHHHHHHHHHcCCCcccc
Q 012855 234 HVITATVKGRGYSLPADIQYA----DARWEIPVVLPLRDCLAQELNMLCQLDCLKTVEL 288 (455)
Q Consensus 234 t~L~nl~~GrG~sl~~~~~~~----~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~ 288 (455)
.. +.+|... ..+..+. ....-..+|+||.+++++||..||+.+||++...
T Consensus 136 ~~---l~~~~d~--~kDqsy~L~~l~~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~k 189 (352)
T TIGR00420 136 SL---LLRALDK--NKDQSYFLYHLSHEQLAKLLFPLGELLKPEVRQIAKNAGLPTAEK 189 (352)
T ss_pred EE---EEEccCC--CcCcceecccCCHHHhhhhcccCCCCCHHHHHHHHHHcCCCCCCC
Confidence 22 2333321 1111110 0111256899999999999999999999998753
No 26
>PRK14561 hypothetical protein; Provisional
Probab=99.71 E-value=1.3e-16 Score=149.64 Aligned_cols=145 Identities=16% Similarity=0.207 Sum_probs=108.7
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
||+|++|||+||++|++++.++ +++.++|++.+. . ...+.++.+++.+ |+
T Consensus 2 kV~ValSGG~DSslll~~l~~~------------------~~v~a~t~~~g~-~--------~e~~~a~~~a~~l---Gi 51 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF------------------YDVELVTVNFGV-L--------DSWKHAREAAKAL---GF 51 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc------------------CCeEEEEEecCc-h--------hHHHHHHHHHHHh---CC
Confidence 7999999999999999988532 456789999884 2 1356788999998 78
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccC
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGR 243 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~Gr 243 (455)
+++++.+...+ +....+.+.....++..+..+++.++..+| +|+++|++|||.||++++.+++..++-
T Consensus 52 ~~~~v~~~~~~----------~~~~~~~~~~~~~P~~~~~~l~~~~l~~~a--~g~~~Ia~G~n~DD~~et~~r~~~~a~ 119 (194)
T PRK14561 52 PHRVLELDREI----------LEKAVDMIIEDGYPNNAIQYVHEHALEALA--EEYDVIADGTRRDDRVPKLSRSEIQSL 119 (194)
T ss_pred CEEEEECCHHH----------HHHHHHHHHHcCCCCchhHHHHHHHHHHHH--cCCCEEEEEecCCCcchhccHHHHhhh
Confidence 99998876421 111111111122345556688999998887 999999999999999999999876521
Q ss_pred CCCCCcccccccCCCCcceEecCccccHHHHHHHHHHc
Q 012855 244 GYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLD 281 (455)
Q Consensus 244 G~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~ 281 (455)
. ...++.++|||..++++||..|++..
T Consensus 120 ----~-------~~~gi~iirPL~~~~K~eI~~la~~l 146 (194)
T PRK14561 120 ----E-------DRKGVQYIRPLLGFGRKTIDRLVERL 146 (194)
T ss_pred ----h-------cCCCcEEEeeCCCCCHHHHHHHHHhh
Confidence 1 23467899999999999999999754
No 27
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.71 E-value=6.3e-17 Score=157.94 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=115.6
Q ss_pred CCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhh
Q 012855 79 ITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNL 158 (455)
Q Consensus 79 i~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l 158 (455)
+...++|+||+|||+||++|++++.+. ++++.+||+|++... ....+.++++++.+
T Consensus 9 l~~~~~vlVa~SGGvDSs~ll~la~~~-----------------g~~v~av~~~~~~~~-------~~e~~~a~~~a~~l 64 (252)
T TIGR00268 9 LKEFKKVLIAYSGGVDSSLLAAVCSDA-----------------GTEVLAITVVSPSIS-------PRELEDAIIIAKEI 64 (252)
T ss_pred HHhcCCEEEEecCcHHHHHHHHHHHHh-----------------CCCEEEEEecCCCCC-------HHHHHHHHHHHHHc
Confidence 445679999999999999999999753 567889999976311 13557788999998
Q ss_pred CCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHH
Q 012855 159 SPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITA 238 (455)
Q Consensus 159 ~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~n 238 (455)
|+++++++++... ..+. .+...+|.+|+..++..+.++|+++|+++|++|||.||+++.-
T Consensus 65 ---gi~~~ii~~~~~~-----------~~~~---~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~r--- 124 (252)
T TIGR00268 65 ---GVNHEFVKIDKMI-----------NPFR---ANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHR--- 124 (252)
T ss_pred ---CCCEEEEEcHHHH-----------HHHH---hCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCccccccc---
Confidence 7899998875321 1121 1345679999999999999999999999999999999987531
Q ss_pred HhccCCCCCCcccccccCCCCcceEecCcc--ccHHHHHHHHHHcCCCcccc
Q 012855 239 TVKGRGYSLPADIQYADARWEIPVVLPLRD--CLAQELNMLCQLDCLKTVEL 288 (455)
Q Consensus 239 l~~GrG~sl~~~~~~~~~~~~v~iiRPLrd--l~~kEI~~Y~~~~~L~~~~~ 288 (455)
.|. .. ..+..+++||.+ ++++||..|++..|||+...
T Consensus 125 ----pg~-----~a----~~~~~~~~PL~~~~l~K~eIr~la~~~gl~~~~~ 163 (252)
T TIGR00268 125 ----PGY-----RA----VKEFNGVSPWAEFGITKKEIREIAKSLGISFPDK 163 (252)
T ss_pred ----HHH-----HH----HHHcCCCCcchhcCCCHHHHHHHHHHcCCCccCC
Confidence 010 00 011234599987 79999999999999998743
No 28
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.69 E-value=2.3e-16 Score=167.25 Aligned_cols=194 Identities=14% Similarity=0.116 Sum_probs=137.5
Q ss_pred CCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhh
Q 012855 79 ITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNL 158 (455)
Q Consensus 79 i~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l 158 (455)
+.-.+|+||.+|||.||.|+++++.+. ++++.++|+|.|. ... .....+..+.+++.+
T Consensus 174 ~g~~gk~lvllSGGiDS~va~~~~~kr-----------------G~~v~~l~f~~g~-~~~----~~~~~~~a~~l~~~~ 231 (482)
T PRK01269 174 LGTQEDVLSLISGGFDSGVASYMLMRR-----------------GSRVHYCFFNLGG-AAH----EIGVKQVAHYLWNRY 231 (482)
T ss_pred ccccCeEEEEEcCCchHHHHHHHHHHc-----------------CCEEEEEEEecCC-chh----HHHHHHHHHHHHHHh
Confidence 344579999999999999999999753 7899999999874 211 111334455555555
Q ss_pred CC-CCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHH-HHHHHHH---HHHHHHcCCcEEEcccchhHHHH
Q 012855 159 SP-PTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLL-QLRMLSL---QKFASENGYNRLLLGLCTSRIAC 233 (455)
Q Consensus 159 ~~-~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~-~lRr~lL---~~~A~~~g~~~l~lGh~~ddlAe 233 (455)
+. .+++++++++.+.++ .++... +|.++. ..||.+| ..+|.+.|+++|+||||.+|.|.
T Consensus 232 ~~~~~~~l~~v~~~~~~~-----------~i~~~~-----~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvas 295 (482)
T PRK01269 232 GSSHRVRFISVDFEPVVG-----------EILEKV-----DDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSS 295 (482)
T ss_pred CccCCceEEEEecHHHHH-----------HHHhcC-----CCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhh
Confidence 32 256788888765432 222211 244444 5566666 89999999999999999999999
Q ss_pred HHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcccccCCC---CCcHHHHHHHHHHHHHHh
Q 012855 234 HVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQT---HSGINGLVSSFVKILQEE 310 (455)
Q Consensus 234 t~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~---~~Si~~l~~~fi~~Le~~ 310 (455)
++|.|+....- ..++++.|||..+.++||..|++..|+..+...++. ..+.+-.++.++..+++.
T Consensus 296 qtl~nl~~~~~------------~~~~~v~rPLi~~dK~EIi~~a~~ig~~~~s~~~p~~C~~~~~~p~~~~~~~~~~~~ 363 (482)
T PRK01269 296 QTLTNLRLIDN------------VTDTLILRPLIAMDKEDIIDLAREIGTEDFAKTMPEYCGVISKKPTVKAVKEKIEAE 363 (482)
T ss_pred HHHHHHHhhhh------------hcCCceecCCcCCCHHHHHHHHHHhCChhhcccCCCCceeeCCCCcCCCCHHHHHHH
Confidence 99999754210 124678899999999999999999997544322321 123566788889999999
Q ss_pred CCChHHHHHHhH
Q 012855 311 NPSRESTIMRTA 322 (455)
Q Consensus 311 ~Pstv~tI~rT~ 322 (455)
.|++..++++.+
T Consensus 364 ~~~~~~~~~~~~ 375 (482)
T PRK01269 364 EKKFDFAILDRV 375 (482)
T ss_pred hhcCCHHHHHHH
Confidence 998866665554
No 29
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.67 E-value=2.9e-15 Score=146.11 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=112.8
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCC
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSP 160 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~ 160 (455)
..++|+||+|||+||+++++++.+.. ++++.++|++++. . .+ ....+.++.+++.+
T Consensus 21 ~~~~V~vglSGGiDSsvla~l~~~~~----------------~~~~~~~~~~~~~-~-~~----~~e~~~a~~~a~~l-- 76 (250)
T TIGR00552 21 GAKGVVLGLSGGIDSAVVAALCVEAL----------------GEQNHALLLPHSV-Q-TP----EQDVQDALALAEPL-- 76 (250)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHhh----------------CCceEEEEECCcc-C-CC----HHHHHHHHHHHHHh--
Confidence 35689999999999999999886541 3467788988763 1 11 24567889999998
Q ss_pred CCCcEEEEeccccccCCCCChhHHHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHH
Q 012855 161 PTKELHVIPIESIFCSNPCDGRERFKKLVDS---VSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVIT 237 (455)
Q Consensus 161 ~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~---~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~ 237 (455)
|++++++++.+.+.. +...... .....++|.+|.++|+.+|..+|+++|+.+|++||+.++.
T Consensus 77 -gi~~~~i~i~~~~~~--------~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~------ 141 (250)
T TIGR00552 77 -GINYKNIDIAPIAAS--------FQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELM------ 141 (250)
T ss_pred -CCeEEEEcchHHHHH--------HHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHh------
Confidence 799999988765431 0000000 1112256889999999999999999999999999997643
Q ss_pred HHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcc
Q 012855 238 ATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 238 nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
.|.+ .. ++ .....|+||.++++.||..||+..|+|..
T Consensus 142 ---~G~~--t~----~g---d~~~~i~PL~~l~K~eV~~lA~~~g~p~~ 178 (250)
T TIGR00552 142 ---LGYF--TK----YG---DGGCDIAPIGDLFKTQVYELAKRLNVPER 178 (250)
T ss_pred ---hCCe--ec----cc---CCccCccccCCCcHHHHHHHHHHHCccHH
Confidence 2321 11 11 12357999999999999999999999864
No 30
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.67 E-value=2e-15 Score=150.28 Aligned_cols=182 Identities=16% Similarity=0.094 Sum_probs=125.4
Q ss_pred HHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhH
Q 012855 66 FGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEID 145 (455)
Q Consensus 66 ~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~ 145 (455)
.+.+|.++..+ ++++|++|||+||+||||++.+.... ..+.+.+||||+|.. .+
T Consensus 17 i~iLrea~~~f------~~~vv~~SGGKDS~VLL~La~ka~~~-------------~~~~~~vl~iDTG~~--Fp----- 70 (301)
T PRK05253 17 IHILREVAAEF------ENPVMLYSIGKDSSVMLHLARKAFYP-------------GKLPFPLLHVDTGWK--FP----- 70 (301)
T ss_pred HHHHHHHHHhC------CCEEEEecCCHHHHHHHHHHHHhhcc-------------cCCCeeEEEEeCCCC--CH-----
Confidence 44455555432 68999999999999999999765210 134667999999952 21
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcc
Q 012855 146 NAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLG 225 (455)
Q Consensus 146 ~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lG 225 (455)
+..+++.++++++ |++++++..++.+... ..+.....|..|+.+++..|.++++++|++++++|
T Consensus 71 Et~ef~d~~a~~~---gl~l~v~~~~~~i~~g-------------~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G 134 (301)
T PRK05253 71 EMIEFRDRRAKEL---GLELIVHSNPEGIARG-------------INPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGG 134 (301)
T ss_pred HHHHHHHHHHHHh---CCCEEEEeChHHHhcC-------------CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEec
Confidence 4677888999998 7888877654322111 01223457899999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhccCCCCCCcccc---------c-c-cCCCCcceEecCccccHHHHHHHHHHcCCCccccc
Q 012855 226 LCTSRIACHVITATVKGRGYSLPADIQ---------Y-A-DARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELL 289 (455)
Q Consensus 226 h~~ddlAet~L~nl~~GrG~sl~~~~~---------~-~-~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~ 289 (455)
|+.|+-+...-..+..=|.....|+.. + + ...+....|+||.+.++.||-.|+..++||+....
T Consensus 135 ~RrDE~~~Ra~e~~fs~r~~~~~wd~~~q~Pelw~~~~~~~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~pLY 209 (301)
T PRK05253 135 ARRDEEKSRAKERIFSFRDEFGQWDPKNQRPELWNLYNGRINKGEHIRVFPLSNWTELDIWQYIERENIPIVPLY 209 (301)
T ss_pred cccchhhhhccCccccccccccccCccccChhhhhhccccccCCCeEEEeehhhCCHHHHHHHHHHcCCCCCccc
Confidence 999997665422211101111112111 0 0 01234678999999999999999999999987643
No 31
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.65 E-value=1.3e-15 Score=156.09 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=118.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSP 160 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~ 160 (455)
-+||+||+|||+||++|+++|++. .++ ++.++|+|+|. .+ +..+.++++|+++
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~----------------~g~~~Viav~vd~g~-~~-------~e~~~a~~~a~~l-- 55 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEK----------------YGYDEVITVTVDVGQ-PE-------EEIKEAEEKAKKL-- 55 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHh----------------cCCCEEEEEEEECCC-Ch-------HHHHHHHHHHHHc--
Confidence 369999999999999999998642 167 89999999983 32 2456799999998
Q ss_pred CCCcEEEEeccccccCCCCChhHHHHHHHhhcC--CCC-CHHHHHHHHHHHHHHHHHHHcCCcEEEcccchh--HHH--H
Q 012855 161 PTKELHVIPIESIFCSNPCDGRERFKKLVDSVS--DAT-GKEDLLLQLRMLSLQKFASENGYNRLLLGLCTS--RIA--C 233 (455)
Q Consensus 161 ~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~--s~t-sred~~~~lRr~lL~~~A~~~g~~~l~lGh~~d--dlA--e 233 (455)
|++++++++.+.|..+ -+...+..-. ... -.+.+|+.+|+..|.++|+++|+++|+.||+.+ |++ +
T Consensus 56 -Gi~~~vvd~~eef~~~------~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe 128 (394)
T PRK13820 56 -GDKHYTIDAKEEFAKD------YIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFE 128 (394)
T ss_pred -CCCEEEEeCHHHHHHH------HHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHH
Confidence 7899999887544311 1112222110 011 234799999999999999999999999999554 998 5
Q ss_pred HHHHHHhccCCCCCCcccccccCCCCcceEecCcc--ccHHHHHHHHHHcCCCcccccCCCCCcHH
Q 012855 234 HVITATVKGRGYSLPADIQYADARWEIPVVLPLRD--CLAQELNMLCQLDCLKTVELLNQTHSGIN 297 (455)
Q Consensus 234 t~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrd--l~~kEI~~Y~~~~~L~~~~~~~~~~~Si~ 297 (455)
+.+..+ ++.+|-|+++ ++++||..|++.+||++.... ....|++
T Consensus 129 ~~~~a~-------------------~l~viaP~re~~ltK~ei~~ya~~~gip~~~~~-~~~yS~d 174 (394)
T PRK13820 129 AVFRAS-------------------DLEVIAPIRELNLTREWEIEYAKEKGIPVPVGK-EKPWSID 174 (394)
T ss_pred HhhHhh-------------------cCeeeCchhccCCCHHHHHHHHHHcCCCCCcCC-CCCcccc
Confidence 543221 1356789888 899999999999999986421 2234554
No 32
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.60 E-value=8.4e-15 Score=134.19 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=97.3
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
||+|++|||+||+++++++.+. ++++.++|||.+. ... ...+.++.+++.++
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~-----------------~~~v~~~~~~~~~-~~~------~~~~~~~~~~~~~g---- 52 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE-----------------GYEVHALSFDYGQ-RHA------KEEEAAKLIAEKLG---- 52 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc-----------------CCcEEEEEEECCC-CCh------hHHHHHHHHHHHHC----
Confidence 6899999999999999999753 5688999999874 221 23467888888874
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHH------HHHHH
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIA------CHVIT 237 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlA------et~L~ 237 (455)
+...++..+ .....++..+|.++|+++|++||+.+|.+ ++++.
T Consensus 53 ~~~~~~~~~-------------------------------~~~~~~l~~~a~~~g~~~i~~G~~~~d~~~~~~~~~~~~~ 101 (169)
T cd01995 53 PSTYVPARN-------------------------------LIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIE 101 (169)
T ss_pred CCEEEeCcC-------------------------------HHHHHHHHHHHHHCCCCEEEEeeccCccCCCCCCCHHHHH
Confidence 333332110 12335788999999999999999999974 23332
Q ss_pred HHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 238 ATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 238 nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
.+... .. .....++.++|||..+++.||..|++..|+++..
T Consensus 102 ~~~~~--------~~-~~~~~~~~v~~PL~~~~K~ei~~~~~~~g~~~~~ 142 (169)
T cd01995 102 AMNKA--------LN-LGTENGIKIHAPLIDLSKAEIVRLGGELGVPLEL 142 (169)
T ss_pred HHHHH--------HH-hhcCCCeEEEeCcccCCHHHHHHHHhHcCCChhh
Confidence 22110 00 1123457899999999999999999999998875
No 33
>PRK08576 hypothetical protein; Provisional
Probab=99.59 E-value=5.2e-14 Score=146.14 Aligned_cols=176 Identities=16% Similarity=0.122 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCC
Q 012855 58 LDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYY 137 (455)
Q Consensus 58 ~~CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~ 137 (455)
..||..+++.+....+.++. +.+|+|++|||+||+|||+++.+.. -++.+||||+|...
T Consensus 214 N~~~le~~e~~~~~~Lr~~~----~~rVvVafSGGKDStvLL~La~k~~-----------------~~V~aV~iDTG~e~ 272 (438)
T PRK08576 214 NREVLEAFEKASIKFLRKFE----EWTVIVPWSGGKDSTAALLLAKKAF-----------------GDVTAVYVDTGYEM 272 (438)
T ss_pred hHHHHHHHHHHHHHHHHHcC----CCCEEEEEcChHHHHHHHHHHHHhC-----------------CCCEEEEeCCCCCC
Confidence 45999999999888887753 3589999999999999999987641 13789999998521
Q ss_pred CCCCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 012855 138 PVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASEN 217 (455)
Q Consensus 138 ~~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~ 217 (455)
+ +..+.++++++++ |+++++...+. ..........+.++..|..+++..|.++|+++
T Consensus 273 p-------et~e~~~~lae~L---GI~lii~~v~~-------------~~~~~~~g~p~~~~rcCt~lK~~pL~raake~ 329 (438)
T PRK08576 273 P-------LTDEYVEKVAEKL---GVDLIRAGVDV-------------PMPIEKYGMPTHSNRWCTKLKVEALEEAIREL 329 (438)
T ss_pred h-------HHHHHHHHHHHHc---CCCEEEcccCH-------------HHHhhhcCCCCcccchhhHHHHHHHHHHHHhC
Confidence 1 3567788999988 78887722210 00011111223456679999999999999999
Q ss_pred CCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 218 GYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 218 g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
|++++++||. ++.+.+ |-. .+..........++.+|+||.+.+++||..|+..++||+..
T Consensus 330 g~~~iatG~R-~dES~~--------R~~-~p~v~~~~~~~~~v~rI~PL~~Wte~DV~~YI~~~gLP~np 389 (438)
T PRK08576 330 EDGLLVVGDR-DGESAR--------RRL-RPPVVERKTNFGKILVVMPIKFWSGAMVQLYILMNGLELNP 389 (438)
T ss_pred CCCEEEEEee-HHHhHH--------hhc-CCcccccccCCCCeEEEeChhhCCHHHHHHHHHHhCCCCCc
Confidence 9999999996 444321 100 11111000001257899999999999999999999999754
No 34
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=99.57 E-value=2.2e-14 Score=120.80 Aligned_cols=103 Identities=28% Similarity=0.331 Sum_probs=78.0
Q ss_pred EEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCc
Q 012855 85 VLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKE 164 (455)
Q Consensus 85 VLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~ 164 (455)
|+|++|||+||++|++++.++ +.++.++|||++. .+ ..+..+++++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~-----------------~~~~~~~~~~~~~-~~--------~~~~~~~~~~-------- 46 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL-----------------GYQVIAVTVDHGI-SP--------RLEDAKEIAK-------- 46 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh-----------------CCCEEEEEEcCCC-cc--------cHHHHHHHHH--------
Confidence 689999999999999999865 2378899999985 32 1112232221
Q ss_pred EEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccCC
Q 012855 165 LHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRG 244 (455)
Q Consensus 165 ~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~GrG 244 (455)
.+|+..+.++|++.|+++|++|||.||++++.+++.+ ..
T Consensus 47 ---------------------------------------~~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~~~~~~~-~~- 85 (103)
T cd01986 47 ---------------------------------------EAREEAAKRIAKEKGAETIATGTRRDDVANRALGLTA-LL- 85 (103)
T ss_pred ---------------------------------------HHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHH-Hh-
Confidence 1789999999999999999999999999999999987 11
Q ss_pred CCCCcccccccCCCCcceEecCc
Q 012855 245 YSLPADIQYADARWEIPVVLPLR 267 (455)
Q Consensus 245 ~sl~~~~~~~~~~~~v~iiRPLr 267 (455)
. ........++.+++||+
T Consensus 86 ----~-~~~~~~~~~~~~~~Pl~ 103 (103)
T cd01986 86 ----N-LTVTLSGAGIQSLEPLI 103 (103)
T ss_pred ----c-CCCCcccCcceEeecCC
Confidence 1 11123346789999985
No 35
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.56 E-value=4.7e-14 Score=146.13 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=116.3
Q ss_pred CCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHh
Q 012855 78 LITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSN 157 (455)
Q Consensus 78 li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~ 157 (455)
.+..+++++|++|||.||+|+++++.+. ++++.++|++.. ++.++ ...+.++++++.
T Consensus 172 P~g~~gkvvvllSGGiDS~vaa~l~~k~-----------------G~~v~av~~~~~---~~~~~---~~~~~~~~~a~~ 228 (394)
T PRK01565 172 PVGTSGKALLLLSGGIDSPVAGYLAMKR-----------------GVEIEAVHFHSP---PYTSE---RAKEKVIDLARI 228 (394)
T ss_pred ccCCCCCEEEEECCChhHHHHHHHHHHC-----------------CCEEEEEEEeCC---CCCcH---HHHHHHHHHHHH
Confidence 3455689999999999999999999652 789999999642 22221 234555565555
Q ss_pred hC--CCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHH
Q 012855 158 LS--PPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHV 235 (455)
Q Consensus 158 l~--~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~ 235 (455)
++ .++++++++++.+.. ..+....+. ...+-+|+.+++.++..+|.++|+++|++|||.+|.+.++
T Consensus 229 l~~~~~~i~~~vv~~~~~~-----------~~i~~~~~~-~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt 296 (394)
T PRK01565 229 LAKYGGRIKLHVVPFTEIQ-----------EEIKKKVPE-SYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQT 296 (394)
T ss_pred HHHhcCCCcEEEEECHHHH-----------HHHhhcCCC-ceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHH
Confidence 52 125899999986531 122222211 1235578999999999999999999999999999999888
Q ss_pred HHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCC
Q 012855 236 ITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCL 283 (455)
Q Consensus 236 L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L 283 (455)
+.++. + +. ...++.++|||..+++.||..+++..|+
T Consensus 297 ~~~l~---~--i~-------~~~~~~V~rPLig~~K~EI~~lAr~iG~ 332 (394)
T PRK01565 297 LESMY---A--IN-------AVTNLPVLRPLIGMDKEEIIEIAKEIGT 332 (394)
T ss_pred HHHHH---H--Hh-------hccCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 88773 1 11 1123689999999999999999999997
No 36
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=99.55 E-value=1.9e-13 Score=135.21 Aligned_cols=183 Identities=15% Similarity=0.073 Sum_probs=124.4
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchh
Q 012855 65 LFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEI 144 (455)
Q Consensus 65 i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~ 144 (455)
-.+-+|.++..+ ++.+|++|||+||+||||++.+.... . ...+.++|||+|.. .+
T Consensus 8 si~ilRe~~~~f------~~~vv~~SGGKDS~VlLhLa~kaf~~-----------~--~~p~~vl~IDTG~~--F~---- 62 (294)
T TIGR02039 8 AIHIIREVAAEF------ERPVMLYSIGKDSSVLLHLARKAFYP-----------G--PLPFPLLHVDTGWK--FR---- 62 (294)
T ss_pred HHHHHHHHHHhc------CCcEEEEecChHHHHHHHHHHHHhcc-----------c--CCCeEEEEEecCCC--CH----
Confidence 344455555443 23578899999999999999875210 0 34567999999952 22
Q ss_pred HHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEc
Q 012855 145 DNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLL 224 (455)
Q Consensus 145 ~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~l 224 (455)
+..+++.++++++ |++++++..++.++.+. .+-.......|+.++...|.+++.++|++++++
T Consensus 63 -Et~efrd~~a~~~---gl~l~v~~~~~~~~~g~-------------~~~~~~~~~~c~vlK~~pL~~al~e~g~da~it 125 (294)
T TIGR02039 63 -EMIAFRDHMVAKY---GLRLIVHSNEEGIADGI-------------NPFTEGSALHTDIMKTEALRQALDKNQFDAAFG 125 (294)
T ss_pred -HHHHHHHHHHHHh---CCCEEEEechhhhhcCc-------------cccccChHHHhhHHHHHHHHHHHHHcCCCEEEe
Confidence 4778888899998 78998887765433210 011123345789999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhccCCCCCCcccc---------c-c-cCCCCcceEecCccccHHHHHHHHHHcCCCccccc
Q 012855 225 GLCTSRIACHVITATVKGRGYSLPADIQ---------Y-A-DARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELL 289 (455)
Q Consensus 225 Gh~~ddlAet~L~nl~~GrG~sl~~~~~---------~-~-~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~ 289 (455)
||..|+.+.+.=..+..=|.....|+.. + . ...+....|.||.+.++.||-.|+..++||+....
T Consensus 126 G~RRDEe~sRake~i~s~r~~~~~wD~~~q~Pelw~~~~~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY 201 (294)
T TIGR02039 126 GARRDEEKSRAKERIFSFRNAFHQWDPKKQRPELWNLYNGRISKGESVRVFPLSNWTELDIWRYIAAENIPIVPLY 201 (294)
T ss_pred cCChhhhhHhhcCceeeccccccccCccccCchhhhccccccccCCcEEEechhhCCHHHHHHHHHHcCCCCCcCe
Confidence 9999999877522221100000112111 0 0 01224567899999999999999999999998543
No 37
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.53 E-value=1.4e-13 Score=141.63 Aligned_cols=153 Identities=17% Similarity=0.123 Sum_probs=112.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
||+||+|||+||++|+++|++. ++++.++|+|.|. . .+..+.++++++.+ |+
T Consensus 1 kVvla~SGGlDSsvll~~l~e~-----------------g~~V~av~id~Gq-~-------~~e~~~a~~~a~~l---Gi 52 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK-----------------GYEVIAYTADVGQ-P-------EEDIDAIPEKALEY---GA 52 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc-----------------CCEEEEEEEecCC-C-------hHHHHHHHHHHHHh---CC
Confidence 6899999999999999999753 6899999999983 2 13567788999998 66
Q ss_pred -cEEEEeccccccCCCCChhHHHHHHHhhcCCCCC-------HHHHHHHHHHHHHHHHHHHcCCcEEEcccch--hHHHH
Q 012855 164 -ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATG-------KEDLLLQLRMLSLQKFASENGYNRLLLGLCT--SRIAC 233 (455)
Q Consensus 164 -~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~ts-------red~~~~lRr~lL~~~A~~~g~~~l~lGh~~--ddlAe 233 (455)
+++++++.+.|..+ -.+..+..... ...++|.++...|.++|+++|+++|+.||+. +|++.
T Consensus 53 ~~~~viD~~~ef~~~---------~~~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvr 123 (394)
T TIGR00032 53 ENHYTIDAREEFVKD---------YGFAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQER 123 (394)
T ss_pred CeEEEEeCHHHHHHh---------hchhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHH
Confidence 78999987555321 01111111111 1346788999999999999999999999976 48765
Q ss_pred HHHHHHhccCCCCCCcccccccCCCCcceEecCcc--ccHHHHHHHHHHcCCCcccc
Q 012855 234 HVITATVKGRGYSLPADIQYADARWEIPVVLPLRD--CLAQELNMLCQLDCLKTVEL 288 (455)
Q Consensus 234 t~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrd--l~~kEI~~Y~~~~~L~~~~~ 288 (455)
.-....+. ..++.++.||++ ++++|+..|++.+||++...
T Consensus 124 f~r~~~~~---------------~~~l~viaPLrew~l~r~ei~~ya~~~Gip~~~~ 165 (394)
T TIGR00032 124 FERSIRLL---------------NPDLKVIAPWRDLNFTREEEIEYAIQCGIPYPMS 165 (394)
T ss_pred HHHHHHHh---------------CCCCeEECchhhcCCCHHHHHHHHHHcCCCeeEe
Confidence 22211111 113569999965 99999999999999998753
No 38
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.53 E-value=6e-14 Score=132.31 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=104.8
Q ss_pred EEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCc
Q 012855 85 VLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKE 164 (455)
Q Consensus 85 VLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~ 164 (455)
++|++|||+||+++++++.+. ++++.++|+|.+. .. ....+.++.+++.+ +++
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~-----------------g~~v~~~~~~~~~-~~------~~e~~~a~~~a~~l---gi~ 53 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDE-----------------GYEVHAITFDYGQ-RH------SRELESARKIAEAL---GIE 53 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHc-----------------CCcEEEEEEECCC-CC------HHHHHHHHHHHHHh---CCC
Confidence 489999999999999998652 5688999999873 21 13567789999998 689
Q ss_pred EEEEecccccc--CCCCChhHHHHHHHhhcC-CCCCHHHHHHHHH-HHHHHHHHHHcCCcEEEcccchhHHH------HH
Q 012855 165 LHVIPIESIFC--SNPCDGRERFKKLVDSVS-DATGKEDLLLQLR-MLSLQKFASENGYNRLLLGLCTSRIA------CH 234 (455)
Q Consensus 165 ~~iv~l~~v~~--~~~~~~~~~L~~ll~~~~-s~tsred~~~~lR-r~lL~~~A~~~g~~~l~lGh~~ddlA------et 234 (455)
++++++..+-. .....+......+-.... ....++-.+|.+. ..++..+|+++|+++|++|||.+|.+ ..
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~ 133 (201)
T TIGR00364 54 HHVIDLSLLKQLGGSALTDESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDE 133 (201)
T ss_pred eEEEechhhcccccccccCCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHH
Confidence 99888763211 000000000000000000 0001122233333 36678999999999999999999985 45
Q ss_pred HHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcC
Q 012855 235 VITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDC 282 (455)
Q Consensus 235 ~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~ 282 (455)
+++++..... . . ...++++++||.+++|.||..+++..|
T Consensus 134 f~~~~~~~~~------~--~-~~~~~~i~~Pl~~~~K~eI~~la~~~g 172 (201)
T TIGR00364 134 FVKAFNHALN------L--G-MLTPVKIRAPLMDLTKAEIVQLADELG 172 (201)
T ss_pred HHHHHHHHHH------h--h-cCCCeEEEECCcCCCHHHHHHHHHHcC
Confidence 6655432210 0 0 123488999999999999999999999
No 39
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=99.49 E-value=3.5e-13 Score=130.72 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=111.7
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+++|+|++|||+||+||||++.+. +.++.|+|||+|... .+..+.++++.+.+
T Consensus 40 ~~~i~vs~SGGKDS~vlL~L~~~~-----------------~~~i~vvfiDTG~~~-------pet~e~~~~~~~~~--- 92 (241)
T PRK02090 40 GGRLALVSSFGAEDAVLLHLVAQV-----------------DPDIPVIFLDTGYLF-------PETYRFIDELTERL--- 92 (241)
T ss_pred CCCEEEEecCCHHHHHHHHHHHhc-----------------CCCCcEEEecCCCCC-------HHHHHHHHHHHHHh---
Confidence 457999999999999999999864 346789999999622 25778888888888
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVS--DATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITAT 239 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~--s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl 239 (455)
+++++++..+..+. .......... ....++..|..+++..|.+++++++. +++||..++-...-.
T Consensus 93 gl~l~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~--~itG~R~~es~~R~~--- 159 (241)
T PRK02090 93 LLNLKVYRPDASAA--------EQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDA--WITGLRREQSGTRAN--- 159 (241)
T ss_pred CCCEEEECCCccHH--------HHHHHcCCCccccccCHHHHHHHHhhHHHHHHHhcCCC--eEEEechhhCchhcc---
Confidence 78998887543210 0001110011 11467899999999999999999887 889999766432211
Q ss_pred hccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 240 VKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 240 ~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
++. ... ..++..++||.+.+.+||..|+..++||+..
T Consensus 160 -------~~~-~~~---~~~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~~p 196 (241)
T PRK02090 160 -------LPV-LEI---DGGRFKINPLADWTNEDVWAYLKEHDLPYHP 196 (241)
T ss_pred -------Cce-eee---cCCeEEEeehhhCCHHHHHHHHHHcCCCCCh
Confidence 111 110 1157889999999999999999999999864
No 40
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.46 E-value=8.9e-14 Score=141.11 Aligned_cols=176 Identities=20% Similarity=0.200 Sum_probs=108.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCc----hhHHHHHHHHHHHHhhC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSS----EIDNAIQEIKLIVSNLS 159 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~----e~~~~~~~v~~~~~~l~ 159 (455)
||+||+|||+||+|.+++|.+. +|++..||+.... ..+.. ..+++.+.++.+|+.|
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~-----------------G~~V~Gv~m~~~~--~~~~~~~~c~~~~d~~~a~~va~~L- 61 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQ-----------------GYDVIGVTMRNWD--EEDESGKSCCSEEDIEDARRVAEKL- 61 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHC-----------------T-EEEEEEEE-SS---SSSHH-HHHHHHHHHHHHHHHHHH-
T ss_pred eEEEEccCCHHHHHHHHHHHhh-----------------cccceEEEEEEec--cccccCCCCCchhhHHHHHHHHHhc-
Confidence 8999999999999999999863 8999999987642 11110 0134678899999999
Q ss_pred CCCCcEEEEeccccccCCCCChhHHHHHHHhhcCC-C-CCHHHHHHH-HHHHHHHHHHHH-cCCcEEEcccchhHHHHHH
Q 012855 160 PPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSD-A-TGKEDLLLQ-LRMLSLQKFASE-NGYNRLLLGLCTSRIACHV 235 (455)
Q Consensus 160 ~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s-~-tsred~~~~-lRr~lL~~~A~~-~g~~~l~lGh~~ddlAet~ 235 (455)
+||++++++.+.|.. .-+..++++... . -++|-+|.. ++-.+|.+.|++ +|+++|||||-+.-.-..-
T Consensus 62 --gIp~~v~d~~~~f~~------~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~ 133 (356)
T PF03054_consen 62 --GIPHYVVDLREEFWE------EVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEK 133 (356)
T ss_dssp --T--EEEEETHHHHHH------HTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-
T ss_pred --CCCEEEEChHHHHHH------HHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeecc
Confidence 799999999887742 234555555432 2 368999997 588999999999 9999999999764221100
Q ss_pred HHHHhccCCCCCCcccccccCCC----CcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 236 ITATVKGRGYSLPADIQYADARW----EIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 236 L~nl~~GrG~sl~~~~~~~~~~~----~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
-.....-+|.....+..|.-.+- --+++.||-+++|.||..+|+..||+...
T Consensus 134 ~~~~~L~r~~D~~KDQSYfL~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~a~ 189 (356)
T PF03054_consen 134 NGRYRLLRGADPKKDQSYFLSRLPQEQLSRLIFPLGELTKEEVREIAREAGLPVAE 189 (356)
T ss_dssp TTEEEEEE-SSTTC--GGGGTT--HHHHCCEE-TCCCS-HHHHHHHHHHCT-TTTT
T ss_pred CCceEEEecCCCCCCceEEEEecCHHHHHhhcCCCCCCCHHHHHHHHHhcCCcccC
Confidence 00011122222233333321221 13789999999999999999999999554
No 41
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.45 E-value=9e-13 Score=128.39 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=111.9
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
.++|+||+|||+||++++.++.+... .+++.+++++.+. . + ....+.++.+++++
T Consensus 23 ~~~vvv~lSGGiDSs~~a~la~~~~~---------------~~~v~~~~~~~~~-~--~----~~~~~~a~~~a~~l--- 77 (248)
T cd00553 23 FKGVVLGLSGGIDSALVAALAVRALG---------------RENVLALFMPSRY-S--S----EETREDAKELAEAL--- 77 (248)
T ss_pred CCCEEEeCCCcHHHHHHHHHHHHHhC---------------cccEEEEECCCCC-C--C----HHHHHHHHHHHHHh---
Confidence 45899999999999999999976521 2678899998763 1 1 13567789999998
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHh----hcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVD----SVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVIT 237 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~----~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~ 237 (455)
|++++++++.+++.. +...+. ..+...+.|.++..+|+.+|..+|.++|+..|.+|| .+|..+
T Consensus 78 gi~~~~i~i~~~~~~--------~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn----~~E~~~- 144 (248)
T cd00553 78 GIEHVNIDIDPAVEA--------FLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN----KSELLL- 144 (248)
T ss_pred CCeEEEeccHHHHHH--------HHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc----HhHHHh-
Confidence 799999988765432 111111 112234568999999999999999999998898888 334333
Q ss_pred HHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcc
Q 012855 238 ATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 238 nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
|+. +-+++ ....|+||.++++.||..+++..++|..
T Consensus 145 ------G~~----t~~gd---~~~~i~Pl~~l~K~eV~~la~~~~ip~~ 180 (248)
T cd00553 145 ------GYF----TKYGD---GAADINPIGDLYKTQVRELARYLGVPES 180 (248)
T ss_pred ------CCe----eccCC---cccCccccCCCcHHHHHHHHHHHCchHH
Confidence 221 11111 2458999999999999999999999853
No 42
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.45 E-value=2.4e-12 Score=132.27 Aligned_cols=156 Identities=16% Similarity=0.151 Sum_probs=116.2
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
+||+||+|||+||++++++|.+. .+++++++|+|.|. . ++.+.+++++..+ |
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~----------------lG~eViavt~d~Gq-~--------~dle~a~~~A~~l---G 54 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKET----------------YGCEVIAFTADVGQ-G--------EELEPIREKALKS---G 54 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHh----------------hCCeEEEEEEecCC-H--------HHHHHHHHHHHHc---C
Confidence 58999999999999999999752 16799999999884 1 2567788999998 6
Q ss_pred C-cEEEEeccccccCCCCChhHHHHHHHhhc---CC-CCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccch--hHHHHHH
Q 012855 163 K-ELHVIPIESIFCSNPCDGRERFKKLVDSV---SD-ATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCT--SRIACHV 235 (455)
Q Consensus 163 i-~~~iv~l~~v~~~~~~~~~~~L~~ll~~~---~s-~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~--ddlAet~ 235 (455)
+ +++++++.+.|... -+..++..- .. .-..|.+|+.+....|.++|+++|+++|+.||+. +|+...=
T Consensus 55 i~~~~viD~~~ef~~~------~i~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~rf~ 128 (399)
T PRK00509 55 ASEIYVEDLREEFVRD------YVFPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFE 128 (399)
T ss_pred CCeEEEEcCHHHHHHH------hHHHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHHHHH
Confidence 5 57777877655311 122223221 11 2246889999999999999999999999999999 9987642
Q ss_pred HHHHhccCCCCCCcccccccCCCCcceEecCccc---cHHHHHHHHHHcCCCccc
Q 012855 236 ITATVKGRGYSLPADIQYADARWEIPVVLPLRDC---LAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 236 L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl---~~kEI~~Y~~~~~L~~~~ 287 (455)
..--+ +. .++.++-|+++. +++|+..|++.+|||.-.
T Consensus 129 ~g~~a------l~---------pel~VisPlre~~~~tK~eir~~A~~~Gipv~~ 168 (399)
T PRK00509 129 LGIAA------LA---------PDLKVIAPWREWDLKSREELIAYAEEHGIPIPV 168 (399)
T ss_pred HHHHH------hC---------CCCeeecchhhcCCCCHHHHHHHHHHcCCCCCC
Confidence 22111 11 124689999998 999999999999998753
No 43
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=9.4e-13 Score=132.06 Aligned_cols=181 Identities=19% Similarity=0.197 Sum_probs=128.4
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
..||+||+|||+||+|.+++|++. ++++..+|+....-.+......+++.+.++..|+++
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~Q-----------------GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~L--- 62 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQ-----------------GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQL--- 62 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHc-----------------CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHh---
Confidence 469999999999999999999864 789999998643211221112346778899999999
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcC--CCCCHHHHH-HHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVS--DATGKEDLL-LQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITA 238 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~--s~tsred~~-~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~n 238 (455)
|||++++.+++.|-.. -...+++... ...++|-.| +.++-..|.++|+++|+++|+|||-+-.--..- .
T Consensus 63 GIp~~~vdf~~~y~~~------V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~--~ 134 (356)
T COG0482 63 GIPLYVVDFEKEFWNK------VFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEG--I 134 (356)
T ss_pred CCceEEEchHHHHHHH------HHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCc--c
Confidence 7999999988766321 1233444433 234689999 889999999999999999999999875433111 1
Q ss_pred HhccCCCCCCcccccccCC---CC-cceEecCccccHHHHHHHHHHcCCCcccccC
Q 012855 239 TVKGRGYSLPADIQYADAR---WE-IPVVLPLRDCLAQELNMLCQLDCLKTVELLN 290 (455)
Q Consensus 239 l~~GrG~sl~~~~~~~~~~---~~-v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~ 290 (455)
...-||.....+..|.-.. .. -+++.||-++.+.|+...|...+|+.....+
T Consensus 135 ~~l~r~~D~~KDQsYfL~~~~~~ql~~~lFPlG~l~K~evR~iA~~~gL~~a~Kkd 190 (356)
T COG0482 135 ELLLRGVDLNKDQSYFLYALSQEQLERLLFPLGDLEKLEVRPIAAEKGLPTAKKKD 190 (356)
T ss_pred cccccCCCcccchhheecccCHHHHhhccccCCCCCHHHHHHHHHHcCCCccCccc
Confidence 2223444444444332111 11 3689999999999999999999999886443
No 44
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=99.44 E-value=1.1e-12 Score=122.70 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=100.9
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCC-
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSP- 160 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~- 160 (455)
..|+|+.+|||.||.|..+++.+. |+++.+||++...+.+.. ..+..+.+.+...++..
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~kr-----------------G~~V~~l~f~~~~~~~~~---~~~k~~~l~~~l~~~~~~ 62 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKR-----------------GCEVIALHFDSPPFTGEK---AREKVEELAEKLSEYSPG 62 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCB-----------------T-EEEEEEEE-TTTSSCC---CHHHHHHHHHHHHCCSTT
T ss_pred CceEEEEecCCccHHHHHHHHHHC-----------------CCEEEEEEEECCCCCCHH---HHHHHHHHHHHHHHhCCC
Confidence 358999999999999999999742 899999999954322211 12334444455555431
Q ss_pred CCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHh
Q 012855 161 PTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATV 240 (455)
Q Consensus 161 ~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~ 240 (455)
..++++++++.++ +.+++... ....+|=.|+.+-++.-.++|.++|++.|++|++.-+.|.+++.|+.
T Consensus 63 ~~~~l~~v~~~~~-----------~~~i~~~~-~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQTl~nL~ 130 (197)
T PF02568_consen 63 HKIRLYVVDFTEV-----------QKEILRGV-KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQTLENLR 130 (197)
T ss_dssp S-EEEEEECHHHH-----------HHHHHHHS--GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--HHHHH
T ss_pred cceeEEEECcHHH-----------HHHHHhcC-CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhhHHHHh
Confidence 1467778876653 23344333 34568999999999999999999999999999999999999999984
Q ss_pred ccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCC
Q 012855 241 KGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCL 283 (455)
Q Consensus 241 ~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L 283 (455)
. +. ...+.+++|||..+.+.||..+|+..|.
T Consensus 131 ~-----i~-------~~~~~pIlRPLig~dK~EIi~~Ar~Igt 161 (197)
T PF02568_consen 131 V-----IE-------SASDLPILRPLIGFDKEEIIEIARKIGT 161 (197)
T ss_dssp H-----HG-------GG--S-EE-TTTT--HHHHHHHHHHTT-
T ss_pred h-----hh-------cccCCceeCCcCCCCHHHHHHHHHHhCc
Confidence 1 11 1125689999999999999999999874
No 45
>PRK13980 NAD synthetase; Provisional
Probab=99.43 E-value=6.1e-12 Score=123.76 Aligned_cols=167 Identities=19% Similarity=0.234 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCC
Q 012855 60 CFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPV 139 (455)
Q Consensus 60 CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~ 139 (455)
...+.+..-++..+.++.+ ++|+||+|||+||+++++++.+... .+++.++|++++. ..
T Consensus 12 ~~~~~l~~~l~~~v~~~g~----~~vvv~lSGGiDSsv~a~l~~~~~~---------------~~~v~av~~~~~~-~~- 70 (265)
T PRK13980 12 KVREIIVDFIREEVEKAGA----KGVVLGLSGGIDSAVVAYLAVKALG---------------KENVLALLMPSSV-SP- 70 (265)
T ss_pred HHHHHHHHHHHHHHHHcCC----CcEEEECCCCHHHHHHHHHHHHHhC---------------ccceEEEEeeCCC-CC-
Confidence 3334444444555544332 6899999999999999999976421 3578899999873 21
Q ss_pred CCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHc
Q 012855 140 PSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSD--ATGKEDLLLQLRMLSLQKFASEN 217 (455)
Q Consensus 140 s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s--~tsred~~~~lRr~lL~~~A~~~ 217 (455)
....+.++.+++.+ |++++++++..++ ..+...++. ..+.|.++.++|+.+|..+|+++
T Consensus 71 -----~~~~~~a~~la~~l---gi~~~~i~i~~~~-----------~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~ 131 (265)
T PRK13980 71 -----PEDLEDAELVAEDL---GIEYKVIEITPIV-----------DAFFSAIPDADRLRVGNIMARTRMVLLYDYANRE 131 (265)
T ss_pred -----HHHHHHHHHHHHHh---CCCeEEEECHHHH-----------HHHHHHcccccchHHHHHHHHHHHHHHHHHHhhc
Confidence 13567789999998 7899999886543 222222322 34668999999999999999999
Q ss_pred CCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCC
Q 012855 218 GYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLK 284 (455)
Q Consensus 218 g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~ 284 (455)
|+-.|.+|+- + |. +.|-+ +-++|. ...+.||.++++.||...++..|+|
T Consensus 132 g~lvlgTgn~-s---E~-----~~G~~------t~~gD~---~~~l~Pl~~l~K~eV~~la~~lgip 180 (265)
T PRK13980 132 NRLVLGTGNK-S---EL-----LLGYF------TKYGDG---AVDLNPIGDLYKTQVRELARHLGVP 180 (265)
T ss_pred CCEEEcCCCH-h---HH-----HhCCc------cCCCCc---ccCcccCCCCcHHHHHHHHHHHCch
Confidence 9877777643 2 21 22221 111121 2248999999999999999999998
No 46
>PLN02347 GMP synthetase
Probab=99.41 E-value=2.2e-12 Score=137.77 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=113.2
Q ss_pred CCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHh
Q 012855 78 LITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSN 157 (455)
Q Consensus 78 li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~ 157 (455)
.+.+.++|+||||||+||+|+++++++.. +.++.+||||.|.. +.. +..+.++.++++
T Consensus 225 ~~~~~~~vvvalSGGVDSsvla~l~~~al----------------G~~v~av~id~g~~-~~~-----E~~~~~~~~a~~ 282 (536)
T PLN02347 225 TVGPDEHVICALSGGVDSTVAATLVHKAI----------------GDRLHCVFVDNGLL-RYK-----EQERVMETFKRD 282 (536)
T ss_pred HhccCCeEEEEecCChhHHHHHHHHHHHh----------------CCcEEEEEEeCCCC-Chh-----HHHHHHHHHHHH
Confidence 35556799999999999999999998731 56789999999963 322 233444778888
Q ss_pred hCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHH---HHHHHHHH----HcCC--cEEEcccch
Q 012855 158 LSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRM---LSLQKFAS----ENGY--NRLLLGLCT 228 (455)
Q Consensus 158 l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr---~lL~~~A~----~~g~--~~l~lGh~~ 228 (455)
+ |++++++++++.| ++.++..+.+++-|.+.++ .++.+.++ ++|. .+|+-|++.
T Consensus 283 l---gi~~~vvd~~e~f--------------l~~l~~~~~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~ 345 (536)
T PLN02347 283 L---HLPVTCVDASERF--------------LSKLKGVTDPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLY 345 (536)
T ss_pred c---CCcEEEEeCcHHH--------------HhhCCCCCChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcc
Confidence 7 7999999887543 4444555566666666655 66655553 4455 899999999
Q ss_pred hHHHHHHHHHHhccC--CCC--CCc--ccccccCCCCcceEecCccccHHHHHHHHHHcCCC
Q 012855 229 SRIACHVITATVKGR--GYS--LPA--DIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLK 284 (455)
Q Consensus 229 ddlAet~L~nl~~Gr--G~s--l~~--~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~ 284 (455)
+|+.|..- .-|. +.+ +.. -++-........++.||++++|.||..+++..|||
T Consensus 346 ~D~~es~~---r~g~~~~~~~~ik~hhn~~~l~~~~~~~ii~PL~~l~K~eVR~la~~lgl~ 404 (536)
T PLN02347 346 PDVIESCP---PPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGVP 404 (536)
T ss_pred cccccccC---CCCCccccccceeeecccccChHHHHCccccchhhCcHHHHHHHHHHcCCC
Confidence 99987510 0111 001 111 11111112235799999999999999999999998
No 47
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.41 E-value=5.4e-12 Score=120.96 Aligned_cols=199 Identities=18% Similarity=0.197 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCC
Q 012855 60 CFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPV 139 (455)
Q Consensus 60 CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~ 139 (455)
-|+.....++|..++ .+++++|+|||+||+|+.-++++.. +=+++.|+||||+++..
T Consensus 6 ~~ie~~i~~ir~~vg-------~~kvi~alSGGVDSsv~a~L~~~Ai----------------Gd~l~cvfVD~GLlR~~ 62 (315)
T COG0519 6 NFIEEAIEEIREQVG-------DGKVILALSGGVDSSVAAVLAHRAI----------------GDQLTCVFVDHGLLRKG 62 (315)
T ss_pred HHHHHHHHHHHHHhC-------CceEEEEecCCCcHHHHHHHHHHHh----------------hcceEEEEecCCcccCC
Confidence 456666677776654 4699999999999999999998752 45788999999986642
Q ss_pred CCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHH---HHHHHHHHHH
Q 012855 140 PSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLR---MLSLQKFASE 216 (455)
Q Consensus 140 s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lR---r~lL~~~A~~ 216 (455)
..+.+.+++.... ++++..|.-. +.|++.+...+.+|.--.++- -+.+.+.|++
T Consensus 63 -------E~e~V~~~f~~~~--~~nl~~VdA~--------------~~Fl~~L~GvtDPE~KRKiIG~~FI~VFe~ea~k 119 (315)
T COG0519 63 -------EAEQVVEMFREHL--GLNLIVVDAK--------------DRFLSALKGVTDPEEKRKIIGREFIEVFEEEAKK 119 (315)
T ss_pred -------cHHHHHHHHHhhc--CCceEEEchH--------------HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355777766532 6788777543 356677777777776655554 4667889999
Q ss_pred cCCcEEEcccchhHHHHHHHHHHhccCCCCCCc--ccccccCCCCcceEecCccccHHHHHHHHHHcCCCccccc----C
Q 012855 217 NGYNRLLLGLCTSRIACHVITATVKGRGYSLPA--DIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELL----N 290 (455)
Q Consensus 217 ~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~--~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~----~ 290 (455)
+++++++-|.-..|..|.. .|.+..+.. -++-.+....+++|-|||++++.|+....+..|||.-... .
T Consensus 120 ~~~~~LaQGTiYpDvIES~-----~g~~~~IKSHHNVGGLP~~m~lkLvEPLr~LfKDEVR~lg~~LGlp~~iv~RhPFP 194 (315)
T COG0519 120 LGAEFLAQGTIYPDVIESG-----TGKAGTIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRELGRELGLPEEIVYRHPFP 194 (315)
T ss_pred CCcceEEecccccceeeec-----CCCCCccccccccCCCccccceeeeHHHHHHhHHHHHHHHHHhCCCHHHhccCCCC
Confidence 9999999999999999876 444433332 2322333346889999999999999999999999965321 1
Q ss_pred CCCCcH---HHHHHHHHHHHHH
Q 012855 291 QTHSGI---NGLVSSFVKILQE 309 (455)
Q Consensus 291 ~~~~Si---~~l~~~fi~~Le~ 309 (455)
.+...| -+++++.+.-|.+
T Consensus 195 GPGLaiRilGevt~Ekl~ilR~ 216 (315)
T COG0519 195 GPGLAVRILGEVTREKLEILRE 216 (315)
T ss_pred CCCeEEEeecccCHHHHHHHHH
Confidence 133333 3566666665544
No 48
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.36 E-value=2.3e-11 Score=123.88 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=108.2
Q ss_pred ccccccCCCCC--ceecCCCCCCcHHHHHHHH---------HHHHHHHHhhccCCCCC-CEEEEEecCCccHHHHHHHHH
Q 012855 36 NLCVKCKANEP--TPGAGEDGKHCLDCFRSNL---------FGKFRLAVASNALITPA-DNVLVAFSGGPSSRVALQFVH 103 (455)
Q Consensus 36 ~~C~kCk~~~a--v~~~r~~~~~C~~CF~~~i---------~~Kfr~~i~~~~li~~g-~kVLValSGG~dS~vLL~lL~ 103 (455)
+.|.+|--+.. -+....+. .|..|-..-- ..++++.+.+.+-...+ -.++||||||+||+++++++.
T Consensus 2 ~~C~~C~~~~t~p~i~fd~~G-vC~~C~~~~~~~~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~ 80 (343)
T TIGR03573 2 KFCKRCVMPTTRPGITFDEDG-VCSACRNFEEKSKIDWDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLK 80 (343)
T ss_pred CcCCCCCCCCCCCCeeECCCC-CchhhhhHHhhcCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHH
Confidence 45999975443 35555666 9999876321 12333434333222111 359999999999999999885
Q ss_pred HHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhH
Q 012855 104 ELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRE 183 (455)
Q Consensus 104 ~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~ 183 (455)
.. .+.++.+||+|++. . + +...+.++.+++.+ |++++++.++. .
T Consensus 81 ~~----------------~gl~~l~vt~~~~~-~--~----e~~~~n~~~~~~~l---gvd~~~i~~d~----------~ 124 (343)
T TIGR03573 81 KK----------------LGLNPLLVTVDPGW-N--T----ELGVKNLNNLIKKL---GFDLHTITINP----------E 124 (343)
T ss_pred HH----------------hCCceEEEEECCCC-C--C----HHHHHHHHHHHHHc---CCCeEEEeCCH----------H
Confidence 32 15678889999985 2 1 23456788888888 78888776541 1
Q ss_pred HHHHHH-hhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhH
Q 012855 184 RFKKLV-DSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSR 230 (455)
Q Consensus 184 ~L~~ll-~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~dd 230 (455)
.+..++ ..+.....+|-.|..+++.++.++|+++|+..|++||+.+.
T Consensus 125 ~~~~l~~~~~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE 172 (343)
T TIGR03573 125 TFRKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENIAE 172 (343)
T ss_pred HHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHH
Confidence 122222 22334456888999999999999999999999999999994
No 49
>PLN00200 argininosuccinate synthase; Provisional
Probab=99.34 E-value=1.5e-11 Score=126.73 Aligned_cols=165 Identities=17% Similarity=0.144 Sum_probs=113.6
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
+||+||+|||+||++++++|++. .+++++++|+|.|. . .+..+.++++|+.+ |
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~----------------~G~eViav~id~Gq-~-------~~el~~a~~~A~~l---G 58 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLREN----------------YGCEVVCFTADVGQ-G-------IEELEGLEAKAKAS---G 58 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHh----------------hCCeEEEEEEECCC-C-------hHHHHHHHHHHHHc---C
Confidence 69999999999999999999652 16799999999883 2 13567789999998 6
Q ss_pred Cc-EEEEeccccccCCCCChhHHHHHHHhhcCCCCCHH-----HHHHHHHHHHHHHHHHHcCCcEEEcccch--hHHHHH
Q 012855 163 KE-LHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKE-----DLLLQLRMLSLQKFASENGYNRLLLGLCT--SRIACH 234 (455)
Q Consensus 163 i~-~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsre-----d~~~~lRr~lL~~~A~~~g~~~l~lGh~~--ddlAet 234 (455)
++ ++++++.+.|..+-. ...+.. +..--+| .+.|-+....|.++|+++|+++|+.||+. +|+...
T Consensus 59 i~~~~v~dl~~ef~~~~i-----~p~i~~--Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~rf 131 (404)
T PLN00200 59 AKQLVVKDLREEFVRDYI-----FPCLRA--NAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRF 131 (404)
T ss_pred CCEEEEEeCHHHHHHhhc-----CHHHHc--CCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHHH
Confidence 76 577777765532100 011111 1111223 34455888889999999999999999999 888753
Q ss_pred HHHHHhccCCCCCCcccccccCCCCcceEecCcccc---HHHHHHHHHHcCCCcccccCCCCCcHH
Q 012855 235 VITATVKGRGYSLPADIQYADARWEIPVVLPLRDCL---AQELNMLCQLDCLKTVELLNQTHSGIN 297 (455)
Q Consensus 235 ~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~---~kEI~~Y~~~~~L~~~~~~~~~~~Si~ 297 (455)
=..--+ + ..++.++-|+++.. ++|+..|++.+|||....+ ....|++
T Consensus 132 ~~~~~a------l---------~pel~ViaPlre~~~~~r~e~~~~A~~~Gipv~~~~-~~~yS~D 181 (404)
T PLN00200 132 ELTFFA------L---------NPELKVVAPWREWDIKGREDLIEYAKKHNIPVPVTK-KSIYSRD 181 (404)
T ss_pred HHHHHH------h---------CCCCeeeCchhhcCCCCHHHHHHHHHHcCCCCCCCC-CCCCccc
Confidence 221111 1 11346899999975 9999999999999865322 2335554
No 50
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.33 E-value=2.1e-11 Score=115.96 Aligned_cols=153 Identities=22% Similarity=0.212 Sum_probs=114.8
Q ss_pred CCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhh
Q 012855 79 ITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNL 158 (455)
Q Consensus 79 i~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l 158 (455)
++...||+||||||+||++|+.+..+.. |-++.+|+||... .+. ..++.++.+++++
T Consensus 14 ik~~~kv~vAfSGGvDSslLa~la~~~l----------------G~~v~AvTv~sP~----~p~---~e~e~A~~~A~~i 70 (269)
T COG1606 14 IKEKKKVVVAFSGGVDSSLLAKLAKEAL----------------GDNVVAVTVDSPY----IPR---REIEEAKNIAKEI 70 (269)
T ss_pred HhhcCeEEEEecCCccHHHHHHHHHHHh----------------ccceEEEEEecCC----CCh---hhhhHHHHHHHHh
Confidence 3445599999999999999999986642 4578899999653 221 3567788888887
Q ss_pred CCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHH
Q 012855 159 SPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITA 238 (455)
Q Consensus 159 ~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~n 238 (455)
|+.+.++++...- . ++ ..+...||.+|....+..|.+.|.+.|++.|+=|.|.+|+-.
T Consensus 71 ---Gi~H~~i~~~~~~-~----------~~---~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~----- 128 (269)
T COG1606 71 ---GIRHEFIKMNRMD-P----------EF---KENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFD----- 128 (269)
T ss_pred ---CCcceeeehhhcc-h----------hh---ccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcC-----
Confidence 7899888875321 0 11 124568999999999999999999999999999999999854
Q ss_pred HhccCCCCCCcccccccCCCCcceEecCcc--ccHHHHHHHHHHcCCCccc
Q 012855 239 TVKGRGYSLPADIQYADARWEIPVVLPLRD--CLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 239 l~~GrG~sl~~~~~~~~~~~~v~iiRPLrd--l~~kEI~~Y~~~~~L~~~~ 287 (455)
+| |+.-. .....+--||.+ ++++||..|++..||++..
T Consensus 129 ---~R----PG~rA----~kE~gi~sPl~e~gitk~eIre~a~~lgl~~~~ 168 (269)
T COG1606 129 ---YR----PGLRA----LKELGIRSPLAEFGITKKEIREIAKSLGLPTWD 168 (269)
T ss_pred ---CC----cchhh----HHhcCCCChHHHhCCcHHHHHHHHHHcCCCccc
Confidence 22 11110 112345667776 6899999999999999984
No 51
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.32 E-value=2e-11 Score=125.41 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=109.3
Q ss_pred EEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCc
Q 012855 85 VLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKE 164 (455)
Q Consensus 85 VLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~ 164 (455)
|+||+|||+||++++++|.+. .++++.++|+|.|. .. +..+.+++.|+++ |++
T Consensus 1 Vvva~SGGlDSsvll~~l~e~----------------~~~eV~av~~d~Gq-~~-------~~~e~a~~~a~~l---G~~ 53 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK----------------GGYEVIAVTADVGQ-PE-------EEIEAIEEKALKL---GAK 53 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh----------------CCCeEEEEEEECCC-cc-------hhHHHHHHHHHHc---CCC
Confidence 689999999999999999753 14589999999983 21 1237789999998 675
Q ss_pred -EEEEeccccccCCCCChhHHHHHHHhhcC---C-CCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchh--HHHHHHHH
Q 012855 165 -LHVIPIESIFCSNPCDGRERFKKLVDSVS---D-ATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTS--RIACHVIT 237 (455)
Q Consensus 165 -~~iv~l~~v~~~~~~~~~~~L~~ll~~~~---s-~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~d--dlAet~L~ 237 (455)
++++++.+.|..+ -+...+..-. . --..+.+||.+....+.++|+++|+++|+.|++.. |+...=..
T Consensus 54 ~~~viD~~~ef~~~------~i~~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~~ 127 (385)
T cd01999 54 KHVVVDLREEFVED------YIFPAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFELA 127 (385)
T ss_pred EEEEeccHHHHHHH------hhHHHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHHHH
Confidence 8888877655321 0111121110 1 01125678888888899999999999999999963 66521110
Q ss_pred HHhccCCCCCCcccccccCCCCcceEecCccc---cHHHHHHHHHHcCCCccc
Q 012855 238 ATVKGRGYSLPADIQYADARWEIPVVLPLRDC---LAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 238 nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl---~~kEI~~Y~~~~~L~~~~ 287 (455)
+. .-..++.++-|++++ +++|+..|++.+|||+..
T Consensus 128 ---------~~------al~pel~ViaPlre~~~~sr~ev~~~A~~~Gip~~~ 165 (385)
T cd01999 128 ---------FY------ALNPDLKIIAPWRDWEFLSREEEIEYAEEHGIPVPV 165 (385)
T ss_pred ---------HH------hhCCCCEEEcchhhhhcCCHHHHHHHHHHcCCCCcc
Confidence 00 011246899999999 999999999999999764
No 52
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.29 E-value=4.5e-11 Score=118.91 Aligned_cols=170 Identities=15% Similarity=0.075 Sum_probs=117.4
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
++++|++|||+||+|||||+.+.... . ...+.++|||+|...+ +..++..++++++ |
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~-----------~--~~~~pvl~VDTG~~Fp-------Et~efrD~~a~~~---g 94 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRP-----------T--RPPFPLLHVDTTWKFR-------EMIDFRDRRAKEL---G 94 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcc-----------c--CCCeeEEEeCCCCCCH-------HHHHHHHHHHHHh---C
Confidence 45789999999999999999875210 1 2356799999995332 5678888888888 6
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhcc
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKG 242 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~G 242 (455)
++++++...+.+... . ..-..+.+..|+.++..-|.++..++|++.+++|+-.|+-+...=..+..=
T Consensus 95 l~Liv~~~~~~~~~G-----------~--~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~sRak~~ifs~ 161 (312)
T PRK12563 95 LDLVVHHNPDGIARG-----------I--VPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEKSRAKERIFSF 161 (312)
T ss_pred CcEEEecChHHHHhC-----------C--CcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhhhhccCceecc
Confidence 888776544332211 0 011235677788888899999999999999999999999776643322211
Q ss_pred CCCCCCcccccc--------c---CCCCcceEecCccccHHHHHHHHHHcCCCcccc
Q 012855 243 RGYSLPADIQYA--------D---ARWEIPVVLPLRDCLAQELNMLCQLDCLKTVEL 288 (455)
Q Consensus 243 rG~sl~~~~~~~--------~---~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~ 288 (455)
|.....|+.... . .+.....|.||.+.++.+|-.|...++||+...
T Consensus 162 r~~~~~wD~~~qrPelw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pL 218 (312)
T PRK12563 162 RSAFHRWDPKAQRPELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLVPL 218 (312)
T ss_pred cccccccCccccChhhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCCcc
Confidence 111122322110 0 012367899999999999999999999998753
No 53
>PRK04527 argininosuccinate synthase; Provisional
Probab=99.29 E-value=3.7e-11 Score=123.27 Aligned_cols=164 Identities=16% Similarity=0.114 Sum_probs=112.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
.++|+||+|||.||++++.++.+. ++++++|++|.|. .. .+..+.+++++..+
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~-----------------G~~Viavt~d~gq-~~------~~El~~a~~~A~~l--- 54 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQER-----------------GYAVHTVFADTGG-VD------AEERDFIEKRAAEL--- 54 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHc-----------------CCcEEEEEEEeCC-CC------HHHHHHHHHHHHHc---
Confidence 358999999999999999998763 6789999999874 21 13567788999998
Q ss_pred CC-cEEEEeccccccCCCCChhHHHHHHHh--hcC-CCCC-HHHHHHHHHHHHHHHHHHHcCCcEEEcccc--hhHHHHH
Q 012855 162 TK-ELHVIPIESIFCSNPCDGRERFKKLVD--SVS-DATG-KEDLLLQLRMLSLQKFASENGYNRLLLGLC--TSRIACH 234 (455)
Q Consensus 162 ~i-~~~iv~l~~v~~~~~~~~~~~L~~ll~--~~~-s~ts-red~~~~lRr~lL~~~A~~~g~~~l~lGh~--~ddlAet 234 (455)
|+ +++++++.+.|..+ -+..++. .+. ..|. .+. -|.+....|.++|+++|+++|+.|++ .+|+...
T Consensus 55 G~~~~~viD~~eef~e~------vi~p~i~aNa~y~G~yPl~~~-nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rf 127 (400)
T PRK04527 55 GAASHVTVDGGPAIWEG------FVKPLVWAGEGYQGQYPLLVS-DRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRF 127 (400)
T ss_pred CCCeEEEecCHHHHHHH------HHHHHHhcchhhcCCCCCccc-cHHHHHHHHHHHHHHCCCCEEEecCcCCCCchhhc
Confidence 66 68899887755321 1222221 110 0010 111 34456667889999999999999999 8888753
Q ss_pred HHHHHhccCCCCCCcccccccCCCCcceEecCccc------cHHHHHHHHHHcCCCcccccCCCCCcHH
Q 012855 235 VITATVKGRGYSLPADIQYADARWEIPVVLPLRDC------LAQELNMLCQLDCLKTVELLNQTHSGIN 297 (455)
Q Consensus 235 ~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl------~~kEI~~Y~~~~~L~~~~~~~~~~~Si~ 297 (455)
=..--+. . ++.++-|||+. .++|...|++.+|||.-.. ..+.|++
T Consensus 128 rpg~~Al---------------~-el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~~~--~~~yS~D 178 (400)
T PRK04527 128 DLAVKAL---------------G-DYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVRAK--QKAYTIN 178 (400)
T ss_pred cHHHHHh---------------h-cCCccchHHHhcCcccccHHHHHHHHHHcCCCCCCC--CCCcccc
Confidence 3221111 1 35688899886 5778899999999987532 2335654
No 54
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.27 E-value=3e-11 Score=108.78 Aligned_cols=112 Identities=20% Similarity=0.154 Sum_probs=78.2
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
.++|++|||+||+++|+++.+.. +.++.++|+|++. . + ++..+.++++++. +. ++
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~----------------~~~v~~v~~~~g~-~--~----~~~~~~~~~~a~~-g~-~~ 57 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY----------------GLNPLAVTVDNGF-N--S----EEAVKNIKNLIKK-GL-DL 57 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh----------------CCceEEEEeCCCC-C--C----HHHHHHHHHHHHh-CC-Ce
Confidence 48999999999999999986531 2367889999884 2 1 1346778888887 31 33
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHH
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSV-SDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRI 231 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~-~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddl 231 (455)
....+++.+.. ......+ .....+|..|+.+|+.++.++|+++|++.|++||+.+++
T Consensus 58 ~~~~~~~~~~~-----------~~~~~~l~~~~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~ 115 (154)
T cd01996 58 DHLVINPEEMK-----------DLQLARFKAKVGDPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQE 115 (154)
T ss_pred EEEecCHHHHH-----------HHHHHHHhcccCCCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHh
Confidence 33333332211 1111111 123567888999999999999999999999999999987
No 55
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.16 E-value=5.5e-10 Score=107.40 Aligned_cols=166 Identities=15% Similarity=0.112 Sum_probs=105.0
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
++++|+||||.||+++|.++.+. +.++++|++|.|. .. ...++.++.+++.+ |
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~-----------------~~~v~alt~dygq-~~------~~El~~a~~ia~~~---g 54 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ-----------------YDEVHCVTFDYGQ-RH------RAEIDVARELALKL---G 54 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc-----------------CCeEEEEEEEeCC-CC------HHHHHHHHHHHHHc---C
Confidence 48999999999999999888531 3478999999884 22 13567788899888 7
Q ss_pred Cc-EEEEeccccc--cCCCCChh-HHHHHHHhh-cCCCCCHHHHHHHHHHHHHHH-HHHHcCCcEEEcccchhHHHHH--
Q 012855 163 KE-LHVIPIESIF--CSNPCDGR-ERFKKLVDS-VSDATGKEDLLLQLRMLSLQK-FASENGYNRLLLGLCTSRIACH-- 234 (455)
Q Consensus 163 i~-~~iv~l~~v~--~~~~~~~~-~~L~~ll~~-~~s~tsred~~~~lRr~lL~~-~A~~~g~~~l~lGh~~ddlAet-- 234 (455)
++ +++++++..- +.....+. ..+... .. -.+..+++-.+|.+..-.+.. +|.++|++.|++|-|.+|....
T Consensus 55 i~~h~vid~~~l~~l~~s~Lt~~~~~~p~~-~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpD 133 (231)
T PRK11106 55 ARAHKVLDVTLLNELAVSSLTRDSIPVPDY-EPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPD 133 (231)
T ss_pred CCeEEEEeccccccccccccccccccCCcc-ccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCC
Confidence 85 8888876321 11000000 000000 00 001223444566666655555 7889999999999999885321
Q ss_pred ----HHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcC-CCc
Q 012855 235 ----VITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDC-LKT 285 (455)
Q Consensus 235 ----~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~-L~~ 285 (455)
++..+- ....++. ..++.|.-||.+++|.||..++...| +|+
T Consensus 134 cr~~Fi~A~~--------~~~~~~~-~~~i~I~aPl~~lsK~eI~~l~~~lg~v~~ 180 (231)
T PRK11106 134 CRDEFVKALN--------HAVSLGM-AKDIRFETPLMWLNKAETWALADYYGQLDL 180 (231)
T ss_pred CCHHHHHHHH--------HHHHhcc-CCCcEEEecCCCCCHHHHHHHHHHcCCccc
Confidence 111100 0000000 12478999999999999999999999 876
No 56
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=99.09 E-value=2.8e-10 Score=96.12 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=62.4
Q ss_pred cceEecCccccHHHHHHHHHHcCCCcccccCC-CCCcHHHHHHHHHHHHHHhCCChHHHHHHhHhhhCC
Q 012855 260 IPVVLPLRDCLAQELNMLCQLDCLKTVELLNQ-THSGINGLVSSFVKILQEENPSRESTIMRTAGKLTP 327 (455)
Q Consensus 260 v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~-~~~Si~~l~~~fi~~Le~~~Pstv~tI~rT~~KL~~ 327 (455)
++.||||..+.++||..|+.++||+++...|+ ...+.+..++++|..||+.+|++..+++++..++..
T Consensus 1 v~rIRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~~~~ 69 (104)
T TIGR00269 1 VPRIKPLRYIPEKEVVLYAFLNELKVHLDECPYSSLSVRARIRDFLYDLENKKPGVKFSVLRGFEKLIP 69 (104)
T ss_pred CCcccccccCCHHHHHHHHHHcCCCcCCCCCCCCCCCchHHHHHHHHHHHHHCcChHHHHHHHHHHHHH
Confidence 46799999999999999999999999987787 556788999999999999999999999999988874
No 57
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=99.08 E-value=3.2e-09 Score=108.08 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=116.6
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHH-Hhh
Q 012855 80 TPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIV-SNL 158 (455)
Q Consensus 80 ~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~-~~l 158 (455)
.-..|+|+=+|||.||-|..|++.+. |++++++|.+.. |+.++ +..+.+..+. ..+
T Consensus 173 Gt~Gk~l~LlSGGIDSPVA~~l~mkR-----------------G~~v~~v~f~~~---p~~~~---~a~~k~~~l~~~~~ 229 (383)
T COG0301 173 GTQGKVLLLLSGGIDSPVAAWLMMKR-----------------GVEVIPVHFGNP---PYTSE---KAREKVVALALLRL 229 (383)
T ss_pred ccCCcEEEEEeCCCChHHHHHHHHhc-----------------CCEEEEEEEcCC---CCchH---HHHHHHHHHHhhhh
Confidence 33469999999999999999999752 899999998643 33332 3444455554 444
Q ss_pred CCC--CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHH
Q 012855 159 SPP--TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVI 236 (455)
Q Consensus 159 ~~~--~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L 236 (455)
... .+.++++++.++. .++. ......-++-+++.+-+++-.++|++.|+..|++|.+.-++|.++|
T Consensus 230 ~~~~~~~~~~~v~f~~v~-----------~~i~-~~~~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl 297 (383)
T COG0301 230 TSYGGKVRLYVVPFTEVQ-----------EEIL-EKVPESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTL 297 (383)
T ss_pred cccCCceEEEEEchHHHH-----------HHHH-hhcCccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHH
Confidence 311 4677888876542 2222 2223455788899999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCC
Q 012855 237 TATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCL 283 (455)
Q Consensus 237 ~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L 283 (455)
.|+.- + +.--+.+++|||..+.+.||..+|+.-|.
T Consensus 298 ~nL~~---------i---~~~t~~pIlRPLI~~DK~eIi~~Ar~IgT 332 (383)
T COG0301 298 ENLRV---------I---DSVTNTPVLRPLIGLDKEEIIEIARRIGT 332 (383)
T ss_pred HHHHH---------H---HhccCCceeccccCCCHHHHHHHHHHhCC
Confidence 99841 1 11225789999999999999999998874
No 58
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.02 E-value=2.4e-09 Score=101.72 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=89.3
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
|++|.||||.||+++|+++... +++++++|||.|. . . ...++.++++++.+ ++
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~-----------------~~~v~al~~~YGq-~-~-----~~El~~a~~i~~~l---~v 53 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKE-----------------GYEVYALTFDYGQ-R-H-----RRELEAAKKIAKKL---GV 53 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH------------------SEEEEEEEESSS-T-T-----CHHHHHHHHHHHHC---T-
T ss_pred CEEEEeCCCHHHHHHHHHHHHc-----------------CCeEEEEEEECCC-C-C-----HHHHHHHHHHHHHh---CC
Confidence 7899999999999999988754 5799999999995 3 2 14678899999998 68
Q ss_pred -cEEEEeccccccCCCCChhHHHHHHHhh---cCC----CCCHHHHHHHHHHHHHHH----HHHHcCCcEEEcccchhHH
Q 012855 164 -ELHVIPIESIFCSNPCDGRERFKKLVDS---VSD----ATGKEDLLLQLRMLSLQK----FASENGYNRLLLGLCTSRI 231 (455)
Q Consensus 164 -~~~iv~l~~v~~~~~~~~~~~L~~ll~~---~~s----~tsred~~~~lRr~lL~~----~A~~~g~~~l~lGh~~ddl 231 (455)
+++++++..+..... . .+.+. ++. ..+....-=-.|..+|.. +|..+|++.|++|.|.+|-
T Consensus 54 ~~~~~i~l~~~~~~~~----s---~L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~ 126 (209)
T PF06508_consen 54 KEHEVIDLSFLKEIGG----S---ALTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDA 126 (209)
T ss_dssp SEEEEEE-CHHHHCSC----H---HHHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-ST
T ss_pred CCCEEeeHHHHHhhCC----C---cccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCcc
Confidence 888998873221110 0 11110 111 001111111236665555 6778899999999998874
Q ss_pred H------HHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcc
Q 012855 232 A------CHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 232 A------et~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
. ..++..+.+ .... .....++|.-||.+++|.||...+...++++-
T Consensus 127 ~~ypDc~~~F~~~~~~--------~~~~-~~~~~v~i~~P~~~~tK~eiv~~~~~lg~~~~ 178 (209)
T PF06508_consen 127 SGYPDCRPEFIDAMNR--------LLNL-GEGGPVRIETPLIDLTKAEIVKLGVELGVPLE 178 (209)
T ss_dssp T--GGGSHHHHHHHHH--------HHHH-HHTS--EEE-TTTT--HHHHHHHHHHTTHHHH
T ss_pred CCCCCChHHHHHHHHH--------HHHh-cCCCCEEEEecCCCCCHHHHHHHHHHcCCCHH
Confidence 2 122222210 0000 01235899999999999999999998886543
No 59
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=99.00 E-value=6e-10 Score=101.69 Aligned_cols=156 Identities=20% Similarity=0.215 Sum_probs=90.7
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
+|+|++|||+||+||||++.+... ++.+||+|+|. .. .+..+.++++.+++ ++
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~-----------------~~~vv~~dtg~--e~-----p~t~~~~~~~~~~~---~~ 53 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGR-----------------KVPVVFIDTGY--EF-----PETYEFVDELAKRY---GI 53 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHT-----------------TCEEEEEE-ST--B------HHHHHHHHHHHHHT---TC
T ss_pred CeEEEecCCHHHHHHHHHHHHhcC-----------------CCcEEEEecCc--cC-----HHHHHHHHHHHhhh---hh
Confidence 489999999999999999987631 22699999984 11 25677888888887 67
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccC
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGR 243 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~Gr 243 (455)
++++......+ ...+.. ...+...-+...+..++..-+.++.++++...+++|--.++-. .|
T Consensus 54 ~i~~~~~~~~~-------~~~~~~--~~~~~~~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~---------~R 115 (174)
T PF01507_consen 54 PIIVYRPPETF-------EQRFIL--YGWPSKLWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESP---------RR 115 (174)
T ss_dssp EEEEEETTSHH-------HHHHHH--HHHSTTHHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTT---------GC
T ss_pred hhhhcccccch-------hhcccc--ccccchhhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchh---------hh
Confidence 76655443211 011111 0111111112467788888888999999999999997555532 12
Q ss_pred CCCCCcccccccCCC-CcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 244 GYSLPADIQYADARW-EIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 244 G~sl~~~~~~~~~~~-~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
..... .. .+... +...++||.+.+.+||-.|.+.++|++..
T Consensus 116 ~~~~~--~~-~~~~~~~~~~~~Pi~~wt~~dV~~yi~~~~l~~~~ 157 (174)
T PF01507_consen 116 AKLPM--FE-FDEDNPKIIRVYPIADWTEEDVWDYIKANGLPYNP 157 (174)
T ss_dssp CGSSS--EE-EETTTTSEEEE-TTTT--HHHHHHHHHHHT--B-H
T ss_pred hhchh--hh-cccccCCEEEEEehhhCCHHHHHHHHHHhcCCCcH
Confidence 11110 11 11122 35678899999999999999999998754
No 60
>PRK05370 argininosuccinate synthase; Validated
Probab=98.98 E-value=6.7e-09 Score=106.97 Aligned_cols=159 Identities=14% Similarity=0.031 Sum_probs=109.5
Q ss_pred CCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhh
Q 012855 79 ITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNL 158 (455)
Q Consensus 79 i~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l 158 (455)
+.+|+||+||+|||.|+++++..|.+- +++++++++|.|- +.. ++.+.+++.+..+
T Consensus 8 l~~~~KVvLAYSGGLDTSv~l~wL~e~-----------------~~eVia~~aDvGQ--~~~-----ed~~~i~~kA~~~ 63 (447)
T PRK05370 8 LPVGQRVGIAFSGGLDTSAALLWMRQK-----------------GAVPYAYTANLGQ--PDE-----DDYDAIPRRAMEY 63 (447)
T ss_pred CCCCCEEEEEecCCchHHHHHHHHHhc-----------------CCeEEEEEEECCC--CCc-----cchHHHHHHHHHh
Confidence 457889999999999999999988752 6899999999882 211 2456788888887
Q ss_pred CCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCC-----------HHHHHHHHHHHHHHHHHHHcCCcEEEcccc
Q 012855 159 SPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATG-----------KEDLLLQLRMLSLQKFASENGYNRLLLGLC 227 (455)
Q Consensus 159 ~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~ts-----------red~~~~lRr~lL~~~A~~~g~~~l~lGh~ 227 (455)
+ -.+++++++.+.|-. .++..+..... -..+.|.+-...+.++|++.|+++|+=|-
T Consensus 64 G--A~~~~viDlr~eF~e----------~~i~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~- 130 (447)
T PRK05370 64 G--AENARLIDCRAQLVA----------EGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGS- 130 (447)
T ss_pred C--CCEEEEeccHHHHHH----------HHHHHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcC-
Confidence 4 237889988876632 22222211111 13456677788889999999999998884
Q ss_pred hhHHHHHHHHHHhccCCCC-CCcccccccCCCCcceEecCccc-------cHHHHHHHHHHcCCCccc
Q 012855 228 TSRIACHVITATVKGRGYS-LPADIQYADARWEIPVVLPLRDC-------LAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 228 ~ddlAet~L~nl~~GrG~s-l~~~~~~~~~~~~v~iiRPLrdl-------~~kEI~~Y~~~~~L~~~~ 287 (455)
.|+|.. +..+..+..-..++.+|-|.|+. +++|...|++.+|||.-.
T Consensus 131 -------------TGKGNDQvRFE~~~~aL~P~l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~~ 185 (447)
T PRK05370 131 -------------TYKGNDIERFYRYGLLTNPELKIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYKM 185 (447)
T ss_pred -------------CCCCCchHHHHHHHHHhCCCCeEecchhhhhcccccCCHHHHHHHHHHcCCCCCc
Confidence 344421 11111110001257899999986 789999999999999753
No 61
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.95 E-value=1.8e-08 Score=111.50 Aligned_cols=156 Identities=15% Similarity=0.096 Sum_probs=108.1
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
.++|+||+|||+||+++|.++.+.... .+.+.+++++|++ ++. +.+ +...+.++++++.+
T Consensus 361 ~~~vvvglSGGiDSal~l~l~~~a~~~----------lg~~~~~v~~v~m-p~~--~ss----~~s~~~a~~la~~L--- 420 (679)
T PRK02628 361 LKKVVIGISGGLDSTHALLVAAKAMDR----------LGLPRKNILAYTM-PGF--ATT----DRTKNNAVALMKAL--- 420 (679)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHh----------hCCCcceEEEEEC-CCC--CCC----HHHHHHHHHHHHHh---
Confidence 789999999999999988888765321 1122478899998 653 222 24677899999999
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhc----C-CCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSV----S-DATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVI 236 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~----~-s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L 236 (455)
|+++++++++++++.. +..+-... + ...+.+.++.++|+.+|..+|.+.|+.+|.|| +..|.++
T Consensus 421 Gi~~~~i~I~~~~~~~-------~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg----n~sE~~~ 489 (679)
T PRK02628 421 GVTAREIDIRPAALQM-------LKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG----DLSELAL 489 (679)
T ss_pred CCeEEEEEcHHHHHHH-------HHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC----chhhHHh
Confidence 7999999998765321 11111100 0 12345678999999999999999999999999 5666666
Q ss_pred HHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHc
Q 012855 237 TATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLD 281 (455)
Q Consensus 237 ~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~ 281 (455)
....+.- +|. .--+-|+.+++|.++..++++.
T Consensus 490 Gy~T~~~----------GD~---~~~~~~~~~l~Kt~v~~l~~~~ 521 (679)
T PRK02628 490 GWCTYGV----------GDH---MSHYNVNASVPKTLIQHLIRWV 521 (679)
T ss_pred CceecCC----------CCc---ccccccccCCcHHHHHHHHHHH
Confidence 5432210 111 2246788999999988887766
No 62
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.94 E-value=1.6e-08 Score=98.10 Aligned_cols=153 Identities=24% Similarity=0.308 Sum_probs=102.9
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
.+++||+|||.||.+++.+..+... .-++.+|+++... . + +...+.++.+++.+ |
T Consensus 19 ~~vVvglSGGiDSav~A~La~~Alg---------------~~~v~~v~mp~~~-~---~---~~~~~~A~~la~~l---g 73 (242)
T PF02540_consen 19 KGVVVGLSGGIDSAVVAALAVKALG---------------PDNVLAVIMPSGF-S---S---EEDIEDAKELAEKL---G 73 (242)
T ss_dssp SEEEEEETSSHHHHHHHHHHHHHHG---------------GGEEEEEEEESST-S---T---HHHHHHHHHHHHHH---T
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhh---------------hcccccccccccc-C---C---hHHHHHHHHHHHHh---C
Confidence 5899999999999999999886531 1367889988442 1 1 24667788999998 7
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhcc
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKG 242 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~G 242 (455)
+++.++++++++.. +...+.........+.+..++|..++..+|..++ ++++|..- ..|.++ |
T Consensus 74 i~~~~i~i~~~~~~--------~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~--~lVlgT~N--~sE~~~-----G 136 (242)
T PF02540_consen 74 IEYIVIDIDPIFDA--------FLKSLEPADDDLARGNIQARIRMTTLYALANKYN--YLVLGTGN--KSELLL-----G 136 (242)
T ss_dssp SEEEEEESHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEBE--C--HHHHHH-----T
T ss_pred CCeeccchHHHHHH--------HhhhhccchhhhhhhhHHHHHHHHHHHHHhcccc--eEEecCCc--HHHhhc-----C
Confidence 99999999876532 1111111111235677888899999999999886 67777432 222222 2
Q ss_pred CCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcc
Q 012855 243 RGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 243 rG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
- .+-++|.. --+-|+.++++.||...++..++|.-
T Consensus 137 y------~T~~GD~~---~d~~Pi~~L~K~eV~~la~~l~ip~~ 171 (242)
T PF02540_consen 137 Y------FTKYGDGA---GDIAPIADLYKTEVRELARYLGIPEE 171 (242)
T ss_dssp C------SHTTTTTS---SSBETTTTS-HHHHHHHHHHTTCGHH
T ss_pred c------ccccCccc---ccceeeCCcCHHHHHHHHHHHhhHHH
Confidence 1 11122222 23799999999999999999998854
No 63
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.91 E-value=4.1e-08 Score=92.18 Aligned_cols=142 Identities=19% Similarity=0.105 Sum_probs=101.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
|++|++|||+||+++|+++.+. ++++.+++++... .+.+.--.....+.++.+++.+ |+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~-----------------G~~v~~l~~~~~~-~~~~~~~h~~~~e~~~~~A~~l---gi 59 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE-----------------GHEVVALLNLTPE-EGSSMMYHTVNHELLELQAEAM---GI 59 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc-----------------CCEEEEEEEEecC-CCCcccccccCHHHHHHHHHHc---CC
Confidence 6899999999999999999763 6788888887542 2111000012456788888888 79
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccC
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGR 243 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~Gr 243 (455)
|++++++.. +.+++...+ +..|.+++.+ |++.|+.|.+.+|.--+-+.+++..-
T Consensus 60 pl~~i~~~~------------------------~~e~~~~~l-~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~ 113 (194)
T cd01994 60 PLIRIEISG------------------------EEEDEVEDL-KELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERL 113 (194)
T ss_pred cEEEEeCCC------------------------CchHHHHHH-HHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHc
Confidence 998887631 112222232 3345566666 99999999999998877777776433
Q ss_pred CCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 244 GYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 244 G~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
++..+.||.....+|+..=.-..|+..+.
T Consensus 114 ---------------gl~~~~PLW~~~~~~ll~e~~~~g~~~~i 142 (194)
T cd01994 114 ---------------GLEPLAPLWGRDQEELLREMIEAGFKAII 142 (194)
T ss_pred ---------------CCEEEecccCCCHHHHHHHHHHcCCeEEE
Confidence 46789999999999998888888888664
No 64
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=98.88 E-value=3.2e-08 Score=95.09 Aligned_cols=164 Identities=14% Similarity=0.151 Sum_probs=105.6
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
++++++++|||+||+|||||+.+... -.+.|||||.|...+ +..+.+.++.+.+
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~----------------~~i~vv~vDTg~~fp-------ET~e~~d~~~~~~--- 78 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISE----------------PMIPVIFIDTLYHFP-------QTLTLKDELTKKY--- 78 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhC----------------CCCCEEEEeCCCCCH-------HHHHHHHHHHHHh---
Confidence 55799999999999999999987520 235699999995322 4677777887777
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhc
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVK 241 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~ 241 (455)
++.++++-.... ...+.+...+....-..++...|+..+-.=|.++.++++.+.+++|--.++-....
T Consensus 79 ~~~l~v~~~~~~------~~~~~~~~~~G~~~~~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~~Ra------ 146 (226)
T TIGR02057 79 YQTLNLYKYDGC------ESEADFEAKYGKLLWQKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGSARA------ 146 (226)
T ss_pred CCceEEEEeCCc------hhHHHHHHhcCCCccccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCcccc------
Confidence 544444332110 00111111111111123466788888888888888888888999996544321111
Q ss_pred cCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccccc
Q 012855 242 GRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELL 289 (455)
Q Consensus 242 GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~ 289 (455)
.++... .+...++..+.||.+-+..||-.|...++||+....
T Consensus 147 ----~~~~~~--~d~~~~~~kv~Pi~~Wt~~dVw~Yi~~~~lP~npLY 188 (226)
T TIGR02057 147 ----NLPVIE--IDEQNGILKVNPLIDWTFEQVYQYLDAHNVPYNPLL 188 (226)
T ss_pred ----CCcccc--ccCCCCeEEEeehhhCCHHHHHHHHHHcCCCCCchh
Confidence 111110 122345778999999999999999999999987543
No 65
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.6e-08 Score=95.41 Aligned_cols=174 Identities=20% Similarity=0.286 Sum_probs=107.0
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEe------C-CCCCCCCCchhHHHHHHHHH
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVD------E-TAYYPVPSSEIDNAIQEIKL 153 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD------~-~~~~~~s~~e~~~~~~~v~~ 153 (455)
..++|+||+|||+||.|.+++|+.. +|++..||+- + +..++ .+++.+.++.
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~~~-----------------g~~v~gv~M~nWd~~de~~s~cp-----~e~D~~da~~ 61 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLAAR-----------------GYNVTGVFMKNWDSLDEFGSQCP-----AERDWKDAKR 61 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHHhc-----------------CCCeeEEeeeccccccccccCCC-----chhhHHHHHH
Confidence 4579999999999999999999863 7888777763 1 11122 2466788999
Q ss_pred HHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcC-CCC-CHHHHHH-HHHHHHHHHHHH-HcCCcEEEcccchh
Q 012855 154 IVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVS-DAT-GKEDLLL-QLRMLSLQKFAS-ENGYNRLLLGLCTS 229 (455)
Q Consensus 154 ~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~-s~t-sred~~~-~lRr~lL~~~A~-~~g~~~l~lGh~~d 229 (455)
.|+++ +||+|.|.+.+.|=. .-...+++... ..| .+.-.|. .++...+.+.|. ++|+++|++||-+.
T Consensus 62 Vc~~L---nI~~~~Vnf~kEYW~------~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr 132 (377)
T KOG2805|consen 62 VCKQL---NIPLHQVNFVKEYWN------DVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYAR 132 (377)
T ss_pred HHHHh---CCeeEEEeeHHHHHH------HHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeee
Confidence 99999 799999997654311 01223343332 122 3333343 345553445554 56999999999876
Q ss_pred HHHHHHHH---HHhccCCCCCCccccc-ccC--CCC-cceEecCccccHHHHHHHHHHcCCCccc
Q 012855 230 RIACHVIT---ATVKGRGYSLPADIQY-ADA--RWE-IPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 230 dlAet~L~---nl~~GrG~sl~~~~~~-~~~--~~~-v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
-..+.... .+..+. .+..+..+ ... +.. -+.+.||-.+.+.|+...|+..|+|..+
T Consensus 133 ~~~~~~~~~~~~l~~~~--d~~KDQt~FL~~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~~ae 195 (377)
T KOG2805|consen 133 VVLEDEDNAESHLLISK--DMVKDQTYFLSTINQTQLKRLLFPLGCLTKSEVKKLAKQAGFPNAE 195 (377)
T ss_pred eecCcccCcceeEeecc--cccCCceeEeecccHHHHHhhhccCcccCHHHHHHHHHhcCCcccc
Confidence 44332221 011000 01111111 000 011 2468999999999999999999999443
No 66
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.76 E-value=2.3e-08 Score=81.01 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHH
Q 012855 205 LRMLSLQKFASENGYNRLLLGLCTSRIACHVITAT 239 (455)
Q Consensus 205 lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl 239 (455)
.|++.+.++|+++|+++|++|||.+|.+++.+.+.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~ 69 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS 69 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch
Confidence 46677889999999999999999999999988753
No 67
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=98.75 E-value=1e-07 Score=90.67 Aligned_cols=156 Identities=14% Similarity=0.136 Sum_probs=98.6
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+.+|.|.+|||+||+|||||+.+. .-++.|+|||.|.. . .+..+++.++.+.+
T Consensus 13 ~~~~~~s~SgGKDS~Vll~L~~~~-----------------~~~~~v~f~DTg~e--f-----peT~efv~~~~~~~--- 65 (212)
T TIGR00434 13 GGHLVYSTSFGIQGAVLLDLVSKI-----------------SPDIPVIFLDTGYH--F-----PETYELIDELTERY--- 65 (212)
T ss_pred CCCEEEEecCCHHHHHHHHHHHhc-----------------CCCCcEEEecCCCC--C-----HHHHHHHHHHHHHh---
Confidence 347999999999999999999764 12356899999952 2 24677788887777
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVS---DATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITA 238 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~---s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~n 238 (455)
++.++++.-+.. ...+..... -.......|..++-.-|.++.++++...+++|--.++-...-.
T Consensus 66 ~l~i~~~~~~~~-----------~~~~~~~~g~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~~R~~-- 132 (212)
T TIGR00434 66 PLNIKVYKPDLS-----------LAEQAAKYGDKLWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGPSRAN-- 132 (212)
T ss_pred CCceEEECCchh-----------HHHHHHhcCCCccccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCccccC--
Confidence 455554432100 011111010 0123344566666677777777777778788855554321110
Q ss_pred HhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 239 TVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 239 l~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
+.. +. .+..+++..+.||.+-+.+||-.|...++||+..
T Consensus 133 --------~~~-~~-~~~~~~~~~v~PI~dWt~~dVw~Yi~~~~lp~np 171 (212)
T TIGR00434 133 --------LSI-LN-IDEKFGILKVLPLIDWTWKDVYQYIDAHNLPYNP 171 (212)
T ss_pred --------Cce-ee-ecCCCCcEEEeehhhCCHHHHHHHHHHcCCCCCc
Confidence 110 11 1222456789999999999999999999999764
No 68
>PTZ00323 NAD+ synthase; Provisional
Probab=98.75 E-value=8.1e-07 Score=88.43 Aligned_cols=180 Identities=13% Similarity=0.051 Sum_probs=107.8
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCC
Q 012855 56 HCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETA 135 (455)
Q Consensus 56 ~C~~CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~ 135 (455)
+=-+.|++.....++..+.+. ..++++||+|||.||++++.+..+.... ...+.+.+.. |.-..
T Consensus 24 ~~~~~~i~~~~~~L~~~l~~~----g~~~vVVglSGGVDSav~aaLa~~alg~----------~~~~~~~~~~--v~~P~ 87 (294)
T PTZ00323 24 FNPAAWIEKKCAKLNEYMRRC----GLKGCVTSVSGGIDSAVVLALCARAMRM----------PNSPIQKNVG--LCQPI 87 (294)
T ss_pred CCHHHHHHHHHHHHHHHHHHc----CCCcEEEECCCCHHHHHHHHHHHHHhcc----------ccCCceEEEE--EECCC
Confidence 444567766666666666542 2358999999999999999988764221 0112233332 32111
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcC----CCCCHHHHHHHHHHHHHH
Q 012855 136 YYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVS----DATGKEDLLLQLRMLSLQ 211 (455)
Q Consensus 136 ~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~----s~tsred~~~~lRr~lL~ 211 (455)
.++ ....+.++.+++.+ |++++++++++.+.. +...+.... ..-....+-..+|...+.
T Consensus 88 ---~ss---~~~~~~A~~la~~l---Gi~~~~idi~~l~~~--------~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY 150 (294)
T PTZ00323 88 ---HSS---AWALNRGRENIQAC---GATEVTVDQTEIHTQ--------LSSLVEKAVGIKGGAFARGQLRSYMRTPVAF 150 (294)
T ss_pred ---CCC---HHHHHHHHHHHHHh---CCcEEEEECcHHHHH--------HHHHHhhhhcccchhhHHHhHHHHHHhHHHH
Confidence 122 24667889999988 799999998875421 111111100 000011122234444444
Q ss_pred HH---HHHcCCcEEEccc-chhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCC
Q 012855 212 KF---ASENGYNRLLLGL-CTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLK 284 (455)
Q Consensus 212 ~~---A~~~g~~~l~lGh-~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~ 284 (455)
.+ +.+.|++.|++|. |.++.... =..+..|. ++.=+-|+.+++|.||..+++..++|
T Consensus 151 ~la~~~~~~g~~~lV~GT~N~sE~~~~-Gy~t~~GD---------------g~~d~~pia~L~K~eVr~LAr~l~lp 211 (294)
T PTZ00323 151 YVAQLLSQEGTPAVVMGTGNFDEDGYL-GYFCKAGD---------------GVVDVQLISDLHKSEVFLVARELGVP 211 (294)
T ss_pred HHHHHHhhcCCCeEEECCCCchhhhHh-chHhhcCC---------------CCcCchhhcCCcHHHHHHHHHHcCCC
Confidence 44 4467899999999 99986322 00011111 23457899999999999999999998
No 69
>PRK13795 hypothetical protein; Provisional
Probab=98.74 E-value=2e-07 Score=102.38 Aligned_cols=156 Identities=15% Similarity=0.068 Sum_probs=100.8
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+++|+|++|||+||+|||+++.+. ..++.++|+|+|... .+..+.++++++.+
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a-----------------~~~~~vvfiDTg~ef-------pet~e~v~~~~~~~--- 295 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREA-----------------LKDFKAFFNNTGLEF-------PETVENVKEVAEEY--- 295 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHh-----------------CCCcEEEEEeCCCCC-------HHHHHHHHHHHHHc---
Confidence 468999999999999999999864 123678999998522 14677888998887
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHHHcC--CcEEEcccchhHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDS--VSDATGKEDLLLQLRMLSLQKFASENG--YNRLLLGLCTSRIACHVIT 237 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~--~~s~tsred~~~~lRr~lL~~~A~~~g--~~~l~lGh~~ddlAet~L~ 237 (455)
+++++++...+.|.. .+.. .++ .....-|..++..-+.++.+++. -...++|--.++-....-+
T Consensus 296 gi~i~~~~~~~~f~~-----------~~~~~g~P~-~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~~R~~~ 363 (636)
T PRK13795 296 GIELIEADAGDAFWR-----------AVEKFGPPA-RDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESFSRAKS 363 (636)
T ss_pred CCcEEEEcccHhHHH-----------hhhccCCCc-cccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchHHHhhC
Confidence 789888765432211 1111 111 11223445555555666666652 2356778777766544432
Q ss_pred HHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 238 ATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 238 nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
.. + +.. ....+...+.|+.+-+..||-.|...++||+..
T Consensus 364 ~~-------~-~~~---~~~~~~~~~~PI~~Wt~~dVw~YI~~~~lp~np 402 (636)
T PRK13795 364 PR-------V-WRN---PWVPNQIGASPIQDWTALEVWLYIFWRKLPYNP 402 (636)
T ss_pred cc-------c-ccC---CCCCCcEEEechHhCCHHHHHHHHHHhCCCCCh
Confidence 11 0 000 001134578999999999999999999999764
No 70
>PRK08557 hypothetical protein; Provisional
Probab=98.74 E-value=6.2e-07 Score=93.36 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=111.1
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+..++|++|||+||+|||+++.+. ..++.++|+|+|... .+..+.++++++.+
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~-----------------~~~i~vvfvDTG~ef-------pET~e~ve~v~~~y--- 233 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEV-----------------IPDLEVIFIDTGLEY-------PETINYVKDFAKKY--- 233 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHh-----------------CCCCEEEEEECCCCC-------HHHHHHHHHHHHHh---
Confidence 458999999999999999998764 224678999999522 24677888888888
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---cCCcEEEcccchhHHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASE---NGYNRLLLGLCTSRIACHVITA 238 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~---~g~~~l~lGh~~ddlAet~L~n 238 (455)
|++++++.-+..+. .+. -...++.. ...-|..++-.-|.++.++ .+-...++|--.++-+...-..
T Consensus 234 gl~i~v~~~~~f~~--------~~~--~~G~Ps~~-~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~~Ra~~~ 302 (417)
T PRK08557 234 DLNLDTLDGDNFWE--------NLE--KEGIPTKD-NRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESFTRANLD 302 (417)
T ss_pred CCCEEEEechHHHH--------HHh--hccCCccc-chhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccchhhccCc
Confidence 78888765321100 000 01123322 2344555666666666665 2334567776555443322111
Q ss_pred HhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccccc--------CCCCCcHHHHHHHHHHHHHHh
Q 012855 239 TVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELL--------NQTHSGINGLVSSFVKILQEE 310 (455)
Q Consensus 239 l~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~--------~~~~~Si~~l~~~fi~~Le~~ 310 (455)
.....| . ......++|+.+.+..||-.|...+++|+.... |-....- ...-+..|.+.
T Consensus 303 ~~~~~~--------~---~~~~~~i~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~---~~~e~~~l~~~ 368 (417)
T PRK08557 303 YERKSG--------F---IDFQTNVFPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLCPSA---LNSEFLRVKEL 368 (417)
T ss_pred eecccc--------c---ccCceeEEecccCCHHHHHHHHHHcCCCCCchhhCCCCCCCccCCCCc---cHHHHHHHHHH
Confidence 111111 0 012235799999999999999999999975432 1111110 11234456667
Q ss_pred CCChHHHHHHhHh
Q 012855 311 NPSRESTIMRTAG 323 (455)
Q Consensus 311 ~Pstv~tI~rT~~ 323 (455)
||.........-.
T Consensus 369 ~Pe~~~k~~~~l~ 381 (417)
T PRK08557 369 YPELFNRWVKYLK 381 (417)
T ss_pred CHHHHHHHHHHHH
Confidence 7766555444433
No 71
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=98.68 E-value=4.3e-07 Score=91.50 Aligned_cols=167 Identities=18% Similarity=0.250 Sum_probs=116.0
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCC
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSP 160 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~ 160 (455)
...||+||+|||.|-+|.+..|.+- .+++++.+++|-|- | +++.+.+++-+.+++
T Consensus 3 ~~kkvvLAYSGGLDTSv~i~wL~e~----------------~~~eVia~tadvGQ--~------eed~~~i~eKA~~~G- 57 (403)
T COG0137 3 KVKKVVLAYSGGLDTSVAIKWLKEK----------------GGAEVIAVTADVGQ--P------EEDLDAIREKALELG- 57 (403)
T ss_pred CCcEEEEEecCCccHHHHHHHHHHh----------------cCceEEEEEEeCCC--C------hHHhHHHHHHHHHhC-
Confidence 3579999999999999998888753 15899999999882 2 146778888888885
Q ss_pred CCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCC-------CHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHH
Q 012855 161 PTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDAT-------GKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIAC 233 (455)
Q Consensus 161 ~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~t-------sred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAe 233 (455)
-.+.+++...+.|-.+ -++..+.... --..+.|-|.-+-+.++|++.|+++|+=|
T Consensus 58 -a~~~~viD~reeF~~~---------yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHG-------- 119 (403)
T COG0137 58 -AEEAYVIDAREEFVED---------YIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHG-------- 119 (403)
T ss_pred -CceEEEeecHHHHHHH---------HHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEec--------
Confidence 3557888876655221 1111111100 11346677877889999999999999888
Q ss_pred HHHHHHhccCCCC-CCcccccccCCCCcceEecCcc--ccHHHHHHHHHHcCCCcccccCCCCCcHH
Q 012855 234 HVITATVKGRGYS-LPADIQYADARWEIPVVLPLRD--CLAQELNMLCQLDCLKTVELLNQTHSGIN 297 (455)
Q Consensus 234 t~L~nl~~GrG~s-l~~~~~~~~~~~~v~iiRPLrd--l~~kEI~~Y~~~~~L~~~~~~~~~~~Si~ 297 (455)
+.|.|.. +.....+..-..++++|-|.|+ +.+.|...|+..+|||.-.. ..+..|++
T Consensus 120 ------cTGKGNDQvRFe~~~~al~p~lkiiAP~Rew~~~R~~~i~Ya~~~gipv~~~-~~kpySiD 179 (403)
T COG0137 120 ------CTGKGNDQVRFELAILALNPDLKIIAPWREWNLTREEEIEYAEEHGIPVKAT-KEKPYSID 179 (403)
T ss_pred ------CCCCCCceeeeeeehhhhCCCcEEEeehhhhccChHHHHHHHHHcCCCcccc-CCCCcccc
Confidence 5677742 3333332212347899999987 67899999999999998764 23456665
No 72
>PRK13794 hypothetical protein; Provisional
Probab=98.64 E-value=1.3e-06 Score=92.87 Aligned_cols=157 Identities=16% Similarity=0.146 Sum_probs=99.7
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+++++|++|||+||+|+|+++.+.. +.++.++|+|+|...+ +..+.++++++++
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~----------------~~~~~vvfiDTG~efp-------et~e~i~~~~~~~--- 300 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKAL----------------GINFPVLFNDTGLEFP-------ETLENVEDVEKHY--- 300 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHh----------------CCCeEEEEEECCCCCh-------HHHHHHHHHHHhc---
Confidence 4689999999999999999987642 1246689999995221 4677788888887
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHHHHHHc--CCcEEEcccchhHHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVD-SVSDATGKEDLLLQLRMLSLQKFASEN--GYNRLLLGLCTSRIACHVITA 238 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~-~~~s~tsred~~~~lRr~lL~~~A~~~--g~~~l~lGh~~ddlAet~L~n 238 (455)
|+++++++.++ | ...+.. ..++. ....-|..++-.=|.++.++. +-..+++|--.++=.....+.
T Consensus 301 gl~i~~~~~~~-f----------~~~~~~~G~P~~-~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~~Ra~~~ 368 (479)
T PRK13794 301 GLEIIRTKSEE-F----------WEKLEEYGPPAR-DNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESFNRSKKP 368 (479)
T ss_pred CCcEEEEchHH-H----------HHHHHhcCCCCC-cchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccHhHhcCc
Confidence 68887775431 1 111111 12222 223445566666666665553 345677886555543333221
Q ss_pred HhccCCCCCCcccccccCC-CCcceEecCccccHHHHHHHHHHcCCCcccc
Q 012855 239 TVKGRGYSLPADIQYADAR-WEIPVVLPLRDCLAQELNMLCQLDCLKTVEL 288 (455)
Q Consensus 239 l~~GrG~sl~~~~~~~~~~-~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~ 288 (455)
.. + .+.. .+...+.|+.+-+..||-.|...++||+...
T Consensus 369 ~~--------~----~~~~~~~~~~~~PI~~Wt~~dVw~Yi~~~~lp~npL 407 (479)
T PRK13794 369 RI--------W----RNPYIKKQILAAPILHWTAMHVWIYLFREKAPYNKL 407 (479)
T ss_pred cc--------c----cccCcCCcEEEechHhCCHHHHHHHHHHcCCCCChH
Confidence 10 0 0111 1345789999999999999999999998753
No 73
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.59 E-value=5e-07 Score=86.42 Aligned_cols=139 Identities=19% Similarity=0.101 Sum_probs=93.9
Q ss_pred EEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEE-EEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCc
Q 012855 86 LVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVG-VVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKE 164 (455)
Q Consensus 86 LValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~-vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~ 164 (455)
++++|||+||+++|+++.+. ++++. +++++......+..+ ....+.++.+++.+ |+|
T Consensus 1 ~vl~SGGkDS~~al~~a~~~-----------------G~~v~~l~~~~~~~~~~~~~~--~~~~~~~~~~A~~l---gip 58 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEE-----------------GHEVRCLITVVPENEESYMFH--TPNIELTRLQAEAL---GIP 58 (218)
T ss_pred CeeecCcHHHHHHHHHHHHc-----------------CCEEEEEEEeccCCCCccccC--CCCHHHHHHHHHHh---CCC
Confidence 37899999999999988763 67774 557653210011101 12346678888888 789
Q ss_pred EEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccCC
Q 012855 165 LHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRG 244 (455)
Q Consensus 165 ~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~GrG 244 (455)
++++.+... . ++.... -+..|.+++++ |++.|+.|.+.++....-+.+++.
T Consensus 59 ~~~i~~~~~---~---------------------~~~~~~-l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~--- 109 (218)
T TIGR03679 59 LVKIETSGE---K---------------------EKEVED-LKGALKELKRE-GVEGIVTGAIASRYQKSRIERICE--- 109 (218)
T ss_pred EEEEECCCC---C---------------------hHHHHH-HHHHHHHHHHc-CCCEEEECCcccHhHHHHHHHHHH---
Confidence 888876410 0 000111 22334444444 999999999999887776766652
Q ss_pred CCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 245 YSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 245 ~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
..+++++.||....+.||..-....|+..+.
T Consensus 110 ------------~~gl~~~~PLw~~~~~el~~~~~~~G~~~~i 140 (218)
T TIGR03679 110 ------------ELGLKVFAPLWGRDQEEYLRELVERGFRFII 140 (218)
T ss_pred ------------hCCCeEEeehhcCCHHHHHHHHHHCCCEEEE
Confidence 2357899999999999999999999988764
No 74
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.57 E-value=2.2e-06 Score=86.57 Aligned_cols=179 Identities=15% Similarity=0.144 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCC
Q 012855 61 FRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVP 140 (455)
Q Consensus 61 F~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s 140 (455)
..+.+..-++..+.++ + ..++|+|++|||.||++++.++.+... ..++..|+++.+. . +
T Consensus 15 ~~e~i~~~l~~~V~~~-~--~~~~VvVgLSGGIDSSvvaaLa~~a~g---------------~~~v~av~~~~~~-s--~ 73 (326)
T PRK00876 15 EAERIRAAIREQVRGT-L--RRRGVVLGLSGGIDSSVTAALCVRALG---------------KERVYGLLMPERD-S--S 73 (326)
T ss_pred HHHHHHHHHHHHHHHH-c--CCCCEEEEccCCHHHHHHHHHHHHhhC---------------CCcEEEEEecCCC-C--C
Confidence 4444555555555432 1 123799999999999999998865310 1356678877542 1 1
Q ss_pred CchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCC-C-hhHHHHHHHhhc---------------CC---------
Q 012855 141 SSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPC-D-GRERFKKLVDSV---------------SD--------- 194 (455)
Q Consensus 141 ~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~-~-~~~~L~~ll~~~---------------~s--------- 194 (455)
....+.++.+++.+ |++++++++..++..-.. + ...-+..++... ..
T Consensus 74 ----~~e~~~A~~lA~~L---Gi~~~~i~i~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 146 (326)
T PRK00876 74 ----PESLRLGREVAEHL---GVEYVVEDITPALEALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDGDGLNVFSLVV 146 (326)
T ss_pred ----hHHHHHHHHHHHHc---CCCEEEEECchHHHHhhhhhhhHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 13567788899998 799999998775321000 0 000000111000 00
Q ss_pred -------------------CCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccCCCCCCccccccc
Q 012855 195 -------------------ATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYAD 255 (455)
Q Consensus 195 -------------------~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~ 255 (455)
.-+.+-+-.++|..+|..+|..+|+ +++|..-- .|..+ |+ .+-++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~N~~aR~Rm~~ly~~A~~~~~--lVlgT~Nk--sE~~~-------Gy----~TkyGD 211 (326)
T PRK00876 147 QDPDGEVTRKRLPANAYLQIVAATNFKQRTRKMVEYYHADRLNY--AVAGTPNR--LEYDQ-------GF----FVKNGD 211 (326)
T ss_pred cCccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCC--EEEcCCch--hhHhh-------CC----eeeecC
Confidence 0122445677899999999998874 55553211 11111 11 111222
Q ss_pred CCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 256 ARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 256 ~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
. .-=+-||.+++|.||...++..|+|.
T Consensus 212 ~---~~d~~Pi~~L~Kt~V~~La~~l~vP~ 238 (326)
T PRK00876 212 G---AADLKPIAHLYKTQVYALAEHLGVPE 238 (326)
T ss_pred c---cccchhccCCCHHHHHHHHHHhCCCH
Confidence 2 33478999999999999999999984
No 75
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.52 E-value=6.8e-07 Score=87.81 Aligned_cols=157 Identities=19% Similarity=0.232 Sum_probs=104.2
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
.+++++|||+||+|||||+.+. ...+.|+|||.|... .+..+.+.++.+++ ++
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~-----------------~~~~~vif~DTg~~f-------~Et~~~~d~~~~~~---~~ 93 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKA-----------------FPDFPVIFLDTGYHF-------PETYEFRDRLAEEY---GL 93 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHh-----------------cCCCcEEEEeCCCcC-------HHHHHHHHHHHHHc---CC
Confidence 4999999999999999999864 123779999999532 25778888888887 56
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhcc
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDA-TGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKG 242 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~-tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~G 242 (455)
++.+...++.+.. . ......+.-. ..+ -.|...+-.-|.++-.+++.+.+++|--.++-....-
T Consensus 94 ~l~~~~~~~~~~~-------~-~~~~~~~~~~~~~r-~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~Rak------ 158 (261)
T COG0175 94 DLKVYRPDDEVAE-------G-EKYGGKLWEPSVER-WCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPTRAK------ 158 (261)
T ss_pred eEEEecCccchhh-------h-hhcccCCCCCCcch-hhhhhHhhhhHHHHHhhcCCceEEEeccccccccccc------
Confidence 7665544332111 1 1111112111 233 2455666677778888888889999966665433211
Q ss_pred CCCCCCcccccccCCC-CcceEecCccccHHHHHHHHHHcCCCcccc
Q 012855 243 RGYSLPADIQYADARW-EIPVVLPLRDCLAQELNMLCQLDCLKTVEL 288 (455)
Q Consensus 243 rG~sl~~~~~~~~~~~-~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~ 288 (455)
++... . +..+ +...|.||.+-+..||-.|...++||+...
T Consensus 159 ----~~~~~-~-~~~~~~~~rv~Pl~~Wt~~dVw~Yi~~~~lp~npL 199 (261)
T COG0175 159 ----LPVVS-F-DSEFGESIRVNPLADWTELDVWLYILANNLPYNPL 199 (261)
T ss_pred ----Cceec-c-ccCcCCeEEEcchhcCCHHHHHHHHHHhCCCCCcH
Confidence 22111 1 1112 477899999999999999999999998753
No 76
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=98.45 E-value=1e-06 Score=90.37 Aligned_cols=155 Identities=19% Similarity=0.215 Sum_probs=93.2
Q ss_pred EEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCcE
Q 012855 86 LVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKEL 165 (455)
Q Consensus 86 LValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~ 165 (455)
+||+|||.||++++..|.+. .+++++++++|.|- + +++.+.+++.+..++ -.++
T Consensus 1 VLAySGGLDTS~~l~~L~e~----------------~~~~Via~~aDlGq--~------~~d~~~i~~kA~~~G--a~~~ 54 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEE----------------GGYEVIAVTADLGQ--P------DEDLEAIEEKALKLG--ASKH 54 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHT----------------TTEEEEEEEEESSS--T-------S-HHHHHHHHHHHT---SEE
T ss_pred CeeeCCChHHHHHHHHHHhh----------------cCceEEEEEEECCC--c------HHHHHHHHHHHHhcC--Ccee
Confidence 58999999999999988763 14899999999883 2 135677888888884 2499
Q ss_pred EEEeccccccCCCCChhHHH-HHHHhh-cCCCCC--HHHHHHHHHHHHHHHHHHHcCCcEEEcccch--hHHHHHHHHHH
Q 012855 166 HVIPIESIFCSNPCDGRERF-KKLVDS-VSDATG--KEDLLLQLRMLSLQKFASENGYNRLLLGLCT--SRIACHVITAT 239 (455)
Q Consensus 166 ~iv~l~~v~~~~~~~~~~~L-~~ll~~-~~s~ts--red~~~~lRr~lL~~~A~~~g~~~l~lGh~~--ddlAet~L~nl 239 (455)
+++++.+.|-.+ -+ ..+... +-...- -..+.|.+--+.+.++|++.|+++|+=|-+. +|++-.=+.--
T Consensus 55 ~vvD~r~ef~~~------~i~~aI~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~ 128 (388)
T PF00764_consen 55 IVVDARDEFAED------YIFPAIKANALYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSIR 128 (388)
T ss_dssp EEEE-HHHHHHH------THHHHHHTT--BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHHH
T ss_pred eecchHHHHHHH------HHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHHH
Confidence 999987765321 01 111110 000000 0234566777778899999999999988644 66654333221
Q ss_pred hccCCCCCCcccccccCCCCcceEecCcc--ccHHHHHHHHHHcCCCccc
Q 012855 240 VKGRGYSLPADIQYADARWEIPVVLPLRD--CLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 240 ~~GrG~sl~~~~~~~~~~~~v~iiRPLrd--l~~kEI~~Y~~~~~L~~~~ 287 (455)
+. ..++++|-|.|+ ++++|...|++.+|||...
T Consensus 129 al---------------~P~l~viaP~Rd~~~~R~~~i~ya~~~gIpv~~ 163 (388)
T PF00764_consen 129 AL---------------APELKVIAPWRDWEFSREEEIEYAKKHGIPVPV 163 (388)
T ss_dssp HH---------------STTSEEE-GGGHHHHHHHHHHHHHHHTT----S
T ss_pred Hh---------------CcCCcEecccchhhhhHHHHHHHHHHcCCCCCC
Confidence 11 124678888887 5789999999999998764
No 77
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.42 E-value=2.1e-06 Score=81.28 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=100.6
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
.|.+|-||||.||+++|+.+.+. +++++++++|.|- +. ...++.++++++.+ |
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~~-----------------~~ev~alsfdYGQ-rh------~~Ele~A~~iak~l---g 55 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKKE-----------------GYEVHALTFDYGQ-RH------RKELEAAKELAKKL---G 55 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHhc-----------------CCEEEEEEeeCCC-Cc------HHHHHHHHHHHHHc---C
Confidence 58999999999999999988753 6899999999984 32 24678889999998 7
Q ss_pred CcEEEEecccc--ccCCCC-ChhHHHHHHHhhcCCCCC-HHHHHH---HHHHHHH----HHHHHHcCCcEEEcccchhHH
Q 012855 163 KELHVIPIESI--FCSNPC-DGRERFKKLVDSVSDATG-KEDLLL---QLRMLSL----QKFASENGYNRLLLGLCTSRI 231 (455)
Q Consensus 163 i~~~iv~l~~v--~~~~~~-~~~~~L~~ll~~~~s~ts-red~~~---~lRr~lL----~~~A~~~g~~~l~lGh~~ddl 231 (455)
+++|+++++-. ++..+. ++... ++.... .+++-. -.|.-++ ..+|..+|++.|++|-|.+|.
T Consensus 56 v~~~iid~~~~~~~~~saLtd~~~~-------vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~ 128 (222)
T COG0603 56 VPHHIIDVDLLGEIGGSALTDDSID-------VPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDF 128 (222)
T ss_pred CCeEEechhHHhhcCCCcCcCCCcc-------ccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 99999987532 111110 00000 111000 000000 0133333 356778899999999888875
Q ss_pred HH------------HHHHHHhccCCCCCCcccccccCCCCcc-eEecCccccHHHHHHHHHHcCCCcc
Q 012855 232 AC------------HVITATVKGRGYSLPADIQYADARWEIP-VVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 232 Ae------------t~L~nl~~GrG~sl~~~~~~~~~~~~v~-iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
.. ..+.|++.+ .++. +.-||.++.+.||...+...|.++-
T Consensus 129 sgYPDcrpefi~a~~~~~~l~~~---------------~~~~~i~aPl~~l~Ka~iv~l~~elg~~~~ 181 (222)
T COG0603 129 SGYPDCRPEFIEALNEALNLGTE---------------KGVRIIHAPLMELTKAEIVKLADELGVPLE 181 (222)
T ss_pred CCCCCCCHHHHHHHHHHHHhhcc---------------CCccEEeCCeeeccHHHHHHHHHHhCCcch
Confidence 43 122222221 2234 6899999999999999999997654
No 78
>PRK13981 NAD synthetase; Provisional
Probab=98.40 E-value=5.3e-06 Score=89.82 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=98.3
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
-.+++|++|||.||++++.++.+... ..+++++++.... ++ ....+.++.+++.+
T Consensus 280 ~~~~vvglSGGiDSa~~a~la~~a~g---------------~~~v~~~~~p~~~----~~---~~~~~~a~~~a~~l--- 334 (540)
T PRK13981 280 FPGVVLGLSGGIDSALVAAIAVDALG---------------AERVRAVMMPSRY----TS---EESLDDAAALAKNL--- 334 (540)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHhC---------------cCcEEEEECCCCC----CC---HHHHHHHHHHHHHc---
Confidence 45899999999999999988765311 1356677765321 11 13567788889988
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhc
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVK 241 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~ 241 (455)
|+++++++++..|..- ...+...+.........+-+-.++|..+|..+|..+|+-.|-|||=... +.
T Consensus 335 gi~~~~i~i~~~~~~~----~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~sE~---------~~ 401 (540)
T PRK13981 335 GVRYDIIPIEPAFEAF----EAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNKSEM---------AV 401 (540)
T ss_pred CCeEEEEECHHHHHHH----HHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCccCHH---------Hc
Confidence 7999999988765320 0001111111112344577778999999999999988755555543222 11
Q ss_pred cCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcC
Q 012855 242 GRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDC 282 (455)
Q Consensus 242 GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~ 282 (455)
|= -+-++|. .--+-|+.+++|.++...++..+
T Consensus 402 Gy------~t~~GD~---~~~~~pi~~l~K~~v~~la~~~~ 433 (540)
T PRK13981 402 GY------ATLYGDM---AGGFAPIKDVYKTLVYRLCRWRN 433 (540)
T ss_pred CC------eEecCCc---ccCccccCCCCHHHHHHHHHHHH
Confidence 11 1111122 23488999999999999998876
No 79
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=5.8e-06 Score=73.79 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=103.8
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
+|-|-+|||+||+..+++|..+ +|++..|+|+.|.+..+ +..++.++.+ ||
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~kl-----------------gyev~LVTvnFGv~d~~---------k~A~~tA~~l---gF 52 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKL-----------------GYEVELVTVNFGVLDSW---------KYARETAAIL---GF 52 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHh-----------------CCCcEEEEEEeccccch---------hhHHHHHHHh---CC
Confidence 4678899999999999999876 89999999999974432 3456667777 79
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccC
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGR 243 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~Gr 243 (455)
++.++.|+..+- +....-+++ ..-+--..+.+-...|..+|.. .++.|+=|.-.||-+-++=..
T Consensus 53 ~h~vl~Ldr~il------e~A~em~ie----dg~P~~aIq~iH~~alE~~A~r-~~~~iaDGTRRDDrvP~ls~~----- 116 (198)
T COG2117 53 PHEVLQLDREIL------EDAVEMIIE----DGYPRNAIQYIHEMALEALASR-EVDRIADGTRRDDRVPKLSRS----- 116 (198)
T ss_pred CcceeccCHHHH------HHHHHHHHh----cCCCchHHHHHHHHHHHHHHHH-HHHHHcCCCcccccCccccHH-----
Confidence 999988764210 011112221 1112233445555666666655 566666666666543221110
Q ss_pred CCCCCcccccccCCCCcceEecCccccHHHHHHHHHH-cCCCcccccCCCCCcHHHHHHHHHH
Q 012855 244 GYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQL-DCLKTVELLNQTHSGINGLVSSFVK 305 (455)
Q Consensus 244 G~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~-~~L~~~~~~~~~~~Si~~l~~~fi~ 305 (455)
.+.-...|.+|..|+||..+..+-|...+.. ..+.........+...+...+.++.
T Consensus 117 ------~~qSLEdR~nv~Yi~PL~G~G~kti~~Lv~~~f~~e~~~Se~~~k~DYEaElR~lL~ 173 (198)
T COG2117 117 ------EAQSLEDRLNVQYIRPLLGLGYKTIRRLVSAIFILEEGPSEKIEKADYEAELRYLLR 173 (198)
T ss_pred ------HHhhHHHhcCceeecccccccHHHHHHHHHHHeeeeccccccccccchHHHHHHHHH
Confidence 0111234678999999999999999888753 3443332111133344545555554
No 80
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.27 E-value=4.9e-06 Score=81.45 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=76.4
Q ss_pred CCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhh
Q 012855 79 ITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNL 158 (455)
Q Consensus 79 i~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l 158 (455)
+..+.+|.+++|||.||++++.++.+... -.+.+++|+.+. ... .+...++.+++.+
T Consensus 12 ~~~~~~v~~~LSGGlDSs~va~~~~~~~~----------------~~~~~~~~~~~~-~~~------~e~~~a~~~a~~l 68 (269)
T cd01991 12 LRSDVPVGVLLSGGLDSSLVAALAARLLP----------------EPVKTFSIGFGF-EGS------DEREYARRVAEHL 68 (269)
T ss_pred hccCCceEEeecccHHHHHHHHHHHHhhC----------------CCCceEEEeeCC-CCC------ChHHHHHHHHHHh
Confidence 44567899999999999999999876421 014456666542 211 1345677788887
Q ss_pred CCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHH
Q 012855 159 SPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIA 232 (455)
Q Consensus 159 ~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlA 232 (455)
+++++++.+.... -.+.+..++... ..+...+..+...++.+.|++.|+..|++||..|.+.
T Consensus 69 ---~~~~~~~~~~~~~------~~~~~~~~~~~~---~~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf 130 (269)
T cd01991 69 ---GTEHHEVEFTPAD------LLAALPDVIWEL---DEPFADSSAIPLYLLSRLARKHGIKVVLSGEGADELF 130 (269)
T ss_pred ---CCcceEEEcCHHH------HHHHHHHHHHHh---CCCCCCcHHHHHHHHHHHHHHhCCEEEEecCCccccc
Confidence 6888887764210 001111211111 1233344456777888999999999999999999984
No 81
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.25 E-value=2.7e-05 Score=76.46 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=94.0
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
...++||+|||.||.+.+.+.......-. . .+..+...+.++.. |+.+. ...+..+..++.+
T Consensus 38 ~~g~VlGlSGGIDSav~a~L~~~A~~~~~----~--~~~~~~~~~~~l~m------P~~~~---~~~~da~~la~~l--- 99 (268)
T PRK00768 38 LKSLVLGISGGQDSTLAGRLAQLAVEELR----A--ETGDDDYQFIAVRL------PYGVQ---ADEDDAQDALAFI--- 99 (268)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHHhc----c--cccCcceeEEEEEC------CCCCc---CCHHHHHHHHHhc---
Confidence 46899999999999998887765432100 0 00011233333332 22111 1334566777777
Q ss_pred CC-cEEEEeccccccCCCCChhHHHHHHHhh--c-CCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccc-hhHHHHHHH
Q 012855 162 TK-ELHVIPIESIFCSNPCDGRERFKKLVDS--V-SDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLC-TSRIACHVI 236 (455)
Q Consensus 162 ~i-~~~iv~l~~v~~~~~~~~~~~L~~ll~~--~-~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~-~ddlAet~L 236 (455)
|+ ++.+++++.++.. +...+.. . .+..+.+-+-.++|..+|..+|...|+ +++|.. .+.. .+
T Consensus 100 gi~~~~~i~I~~~~~~--------~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~--lvlgT~N~sE~---~~ 166 (268)
T PRK00768 100 QPDRVLTVNIKPAVDA--------SVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGG--LVVGTDHAAEA---VT 166 (268)
T ss_pred CCCeeEEEECHHHHHH--------HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCC--EEEcCCcccHH---Hh
Confidence 57 7889998875432 1111211 0 123456778888999999999998764 666632 2221 11
Q ss_pred HHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCC
Q 012855 237 TATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLK 284 (455)
Q Consensus 237 ~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~ 284 (455)
| + .+-++|. .--+-|+.+++|.||...++..++|
T Consensus 167 -----G--y----~TkyGD~---~~d~~pi~~L~KteV~~La~~l~vP 200 (268)
T PRK00768 167 -----G--F----FTKFGDG---GADILPLFGLNKRQGRALLAALGAP 200 (268)
T ss_pred -----C--c----eeccCCc---cccchhhcCCcHHHHHHHHHHhCCC
Confidence 1 1 1111111 2357899999999999999999998
No 82
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=98.19 E-value=7.4e-06 Score=83.67 Aligned_cols=167 Identities=19% Similarity=0.162 Sum_probs=102.7
Q ss_pred CCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHh
Q 012855 78 LITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSN 157 (455)
Q Consensus 78 li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~ 157 (455)
++. ..+|++++|||+||+|+..+|.+... + =.++++|||.|..+- ...+.+++....
T Consensus 227 ~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg--------------~-~R~~ai~vdNG~mrk-------~Ea~~V~~tl~~ 283 (552)
T KOG1622|consen 227 WVG-DYKVLVAVSGGVDSTVCAALLRRALG--------------P-DRVHAIHVDNGFMRK-------KEAEQVEKTLVY 283 (552)
T ss_pred Hhc-ccceEEEecCCchHHHHHHHHHHhhC--------------C-CceEEEEecccchhh-------hHHHHHHHHHHH
Confidence 454 57999999999999999999987532 1 267899999997442 345667776666
Q ss_pred hCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHH---HHHHHHHHHHHcCC------cEEEcccch
Q 012855 158 LSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQL---RMLSLQKFASENGY------NRLLLGLCT 228 (455)
Q Consensus 158 l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~l---Rr~lL~~~A~~~g~------~~l~lGh~~ 228 (455)
+ |++++++...+- ++..+...+.+|.--.++ --++....|.+..+ ..++-|.=.
T Consensus 284 l---gi~i~v~~as~~--------------f~s~L~~~~dPE~KRkiIG~tfikv~~~~~~~l~~k~~~~~~flaQgtL~ 346 (552)
T KOG1622|consen 284 L---GIPITVVDASET--------------FLSKLKGVTDPEEKRKIIGRTFIKVFDPVASELNKKHGEKESFLAQGTLR 346 (552)
T ss_pred c---CCceEEeechHH--------------HHHhhcccCCHHHhceecccceeeeCcHHHHHhhhccCccceeeeccccc
Confidence 7 799998875432 233344445554322222 12233333433322 256666666
Q ss_pred hHHHHHHHHHHhccCCCC--CCccccc--ccCCC--CcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 229 SRIACHVITATVKGRGYS--LPADIQY--ADARW--EIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 229 ddlAet~L~nl~~GrG~s--l~~~~~~--~~~~~--~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
-|+.|... ..|.|.+ +...-++ .-..+ -.++|.||+++.++|+...-+..|+|...
T Consensus 347 Pd~ieS~s---~~g~~~a~tIKThhn~~~L~r~lrklgK~ieplk~~~kDEvr~lgk~lGlp~~L 408 (552)
T KOG1622|consen 347 PDLIESAS---VYGSGHAETIKTHHNDTGLIRDLRKLGKVIEPLKDFHKDEVRELGKDLGLPESL 408 (552)
T ss_pred chhhhhcc---ccCCchhhhhhcccccchHHHHHHHhcccCchhHHHHHHHHHHhhhhcCCchhh
Confidence 67665543 3444422 1111111 11112 23899999999999999999999998543
No 83
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=98.15 E-value=4.5e-05 Score=80.02 Aligned_cols=187 Identities=14% Similarity=0.106 Sum_probs=98.4
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+..++||+|||+||+|+|+++.+.....+. ..+ .-.++||+.|.|.-.|.-.+-++...+.++.++++.
T Consensus 13 ~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~-----e~~---~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~--- 81 (447)
T TIGR03183 13 DIPWVVGYSGGKDSTAVLQLIWNALAALPA-----EQR---TKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQ--- 81 (447)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHHhccc-----ccc---CcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHc---
Confidence 345899999999999999999864321110 011 125788999998533211111123345566777776
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHh-hcCCCCCHHHHHH-HHH----HHHHHHHHHHcCCcEEEcccchhHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVD-SVSDATGKEDLLL-QLR----MLSLQKFASENGYNRLLLGLCTSRIACHV 235 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~-~~~s~tsred~~~-~lR----r~lL~~~A~~~g~~~l~lGh~~ddlAet~ 235 (455)
++|+.+.-+.-... .+-...++. ..+..+..-..|. .++ .++|..+.+++|-..+++|--.+.-+...
T Consensus 82 ~lpi~~~~v~P~~~------~~Fwv~liGrG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~~RA 155 (447)
T TIGR03183 82 GLPIEPHRLTPEIK------DTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQARA 155 (447)
T ss_pred CCCeEEEecCCCcc------hHHHHHHhcCCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHHHHH
Confidence 45554322211000 000111111 1222111111111 232 34566666677888899997666555543
Q ss_pred HHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcc
Q 012855 236 ITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 236 L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
-. +.+-.+..............+..++.|+.+.+..||-.|...+++|+-
T Consensus 156 ~~-m~k~e~~~~r~~l~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g 205 (447)
T TIGR03183 156 AV-MEKHESGSLRDRLSRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWG 205 (447)
T ss_pred hh-hhhhccccccccccccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCCC
Confidence 32 211111111000000001125678999999999999999999888764
No 84
>PRK06850 hypothetical protein; Provisional
Probab=98.01 E-value=7.8e-05 Score=79.17 Aligned_cols=184 Identities=16% Similarity=0.092 Sum_probs=96.2
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+..++||+|||+||+|+|+++.+.....+.. ++ .-.++|+|.|.+.-.|.-..-++...+.++.++++.
T Consensus 34 ~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e-----~r---~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~--- 102 (507)
T PRK06850 34 NRPWVIGYSGGKDSTAVLQLVWNALAGLPPE-----KR---TKPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQ--- 102 (507)
T ss_pred CCCeEEeCCCCchHHHHHHHHHHHHHhcchh-----cc---CCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHc---
Confidence 3458999999999999999998643211100 01 125789999998522211101123345566677776
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHh-hcCCCCCHHHHHH-HHH----HHHHHHHHHHcCCcEEEcccchhHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVD-SVSDATGKEDLLL-QLR----MLSLQKFASENGYNRLLLGLCTSRIACHV 235 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~-~~~s~tsred~~~-~lR----r~lL~~~A~~~g~~~l~lGh~~ddlAet~ 235 (455)
++|+++.-+.-.... .-...++. .++..+..--.|. .++ .+++..+.+++|-..+++|--.+.=+...
T Consensus 103 glpi~~~~v~P~~~~------sFwv~liGrG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~~RA 176 (507)
T PRK06850 103 GLPITPHKLTPKIND------TFWVNLIGKGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESAARA 176 (507)
T ss_pred CCceEEEeeCCCcch------hHHHHHhcCCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccHHHH
Confidence 566653221100000 00111111 1222222212222 233 34455555667777888886665544433
Q ss_pred HH-HHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcc
Q 012855 236 IT-ATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 236 L~-nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
-. ......|..+... ....+..++.|+.+.+..||-.|...+++|+-
T Consensus 177 ~~m~~~~~~~~rl~~~----~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g 224 (507)
T PRK06850 177 QVMAKHEIEGSRLSRH----TTLPNAFVYTPIEDWSNDDVWKYLLQWENPWG 224 (507)
T ss_pred hhhhhhcccCcceeec----cCCCCcEEEeChHhCCHHHHHHHHHhcCCCCC
Confidence 22 1111111111000 01124568999999999999999998888764
No 85
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.01 E-value=6.2e-05 Score=80.07 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCC
Q 012855 62 RSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPS 141 (455)
Q Consensus 62 ~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~ 141 (455)
.+.+.+.+..++.+. +....+|.+.+|||.||++++.++.++.. .-.+..++|+... .. ..
T Consensus 235 ~e~l~~~l~~aV~~r--~~~~~~vg~~LSGGlDSs~iaa~a~~~~~---------------~~~~~~~t~~~~~-~~-~~ 295 (467)
T TIGR01536 235 VDELRSLLEDAVKRR--LVADVPVGVLLSGGLDSSLVAAIARREAP---------------RGPVHTFSIGFEG-SP-DF 295 (467)
T ss_pred HHHHHHHHHHHHHHH--hccCCceEEEecCChhHHHHHHHHHHhcC---------------CCCceEEEEecCC-CC-CC
Confidence 345666777777542 23566899999999999999998876411 0134455665431 11 11
Q ss_pred chhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcE
Q 012855 142 SEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNR 221 (455)
Q Consensus 142 ~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~ 221 (455)
.+...++.+++.+ +++++++.+.+. +-.+.+..++.... .+......+...++.+.|+++|+..
T Consensus 296 ----~E~~~A~~vA~~l---g~~~~~i~~~~~------~~~~~~~~~v~~~~---~p~~~~~~~~~~~l~~~a~~~G~~v 359 (467)
T TIGR01536 296 ----DESPYARKVADHL---GTEHHEVLFSVE------EGLDALPEVIYHLE---DPTTIRASIPLYLLSKLAREDGVKV 359 (467)
T ss_pred ----ChHHHHHHHHHHh---CCcCeEEECCHH------HHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhcCCEE
Confidence 1234577778887 688888876421 00112334433222 2333445556677889999999999
Q ss_pred EEcccchhHH
Q 012855 222 LLLGLCTSRI 231 (455)
Q Consensus 222 l~lGh~~ddl 231 (455)
|++|+.+|.+
T Consensus 360 lltG~GaDEl 369 (467)
T TIGR01536 360 VLSGEGADEL 369 (467)
T ss_pred EEecCcchhc
Confidence 9999999987
No 86
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.00 E-value=8.8e-05 Score=71.32 Aligned_cols=132 Identities=16% Similarity=0.117 Sum_probs=77.2
Q ss_pred HHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhH
Q 012855 66 FGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEID 145 (455)
Q Consensus 66 ~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~ 145 (455)
.+.|+.++.. .+....+|.|.+|||.||.+++.++.+. .+..+..++++... ...
T Consensus 3 r~~l~~av~~--rl~~~~~i~~~LSGGlDSs~i~~~~~~~----------------~~~~~~~~t~~~~~-~~~------ 57 (255)
T PF00733_consen 3 RELLEEAVAR--RLRSDKPIGILLSGGLDSSAIAALAARQ----------------GGPPIKTFTIGFED-DDY------ 57 (255)
T ss_dssp HHHHHHHHHH--HCGCTSEEEEE--SSHHHHHHHHHHHHT----------------CCSEEEEEEEECSS-CC-------
T ss_pred HHHHHHHHHH--HHhcCCCEEEECCCChhHHHHHHHHHHh----------------hCCceeEEEEEcCC-Ccc------
Confidence 4555666654 2346779999999999999999999862 14567788887652 111
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcc
Q 012855 146 NAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLG 225 (455)
Q Consensus 146 ~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lG 225 (455)
.+...++.+++.+ |++++.+.+.... -.+.+..++..+..... ......+-...+.+.|++.|.+.|++|
T Consensus 58 ~e~~~a~~va~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~a~~~~~~~~ltG 127 (255)
T PF00733_consen 58 DEREYARKVARHL---GLEHHEIELDPED------LLDNLEDIIWRLDGPSP-LDDPNSLPLYLLARLARENGIRVLLTG 127 (255)
T ss_dssp -HHHHHHHHHHHH---T-EEEEEEE-HHH------HHHHHHHHHHHHT---H-HHHHHHHHHHHHHHHHCHTTBSEEE--
T ss_pred hhHHHHHHHhccc---ccccceeeechhh------HHHhHHHHHHHHhCCcc-cccccccHHHHHHHhhcccceeEEEec
Confidence 1345567777777 6788777664310 01113333332211111 124444555567788889999999999
Q ss_pred cchhHHH
Q 012855 226 LCTSRIA 232 (455)
Q Consensus 226 h~~ddlA 232 (455)
|-.|.+.
T Consensus 128 ~GgDelf 134 (255)
T PF00733_consen 128 QGGDELF 134 (255)
T ss_dssp TTHHHHH
T ss_pred ccccccc
Confidence 9999775
No 87
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=97.81 E-value=0.00039 Score=68.32 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=97.1
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
.+++||+|||.||++.+.+......+ +.....+.++....+.+ . +...+.++..++.+ +
T Consensus 26 k~~VlGiSGGiDSa~~~~La~~A~~~-----------~~~~~~~~av~mP~~~~---~----~~~~~da~~~~~~l---g 84 (268)
T COG0171 26 KGVVLGLSGGIDSALVLALAVRALGK-----------GDSKENVLAVRLPYGYT---V----QADEEDAQDLAEAL---G 84 (268)
T ss_pred CCeEEEcccChHHHHHHHHHHHHhcc-----------ccchhheeeEECCCCCc---c----ccCHHHHHHHHHHh---C
Confidence 47999999999999998887654210 01122355666544310 1 13456678888887 6
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhc
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVDS-VSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVK 241 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~~-~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~ 241 (455)
+.+..+++.+++..- ...+...+.. .....+.+-+-.++|..++..+|.++| .+++|.. +.+|.++
T Consensus 85 ~~~~~i~I~~~v~~~----~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~--~lVlGTg--n~sE~~~----- 151 (268)
T COG0171 85 IDYKEINIKPAVDAF----LKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLG--GLVLGTG--NKSELAL----- 151 (268)
T ss_pred CceEEEecHHHHHHH----HHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcC--CEEEcCC--cHHHHhc-----
Confidence 778888887754320 0011111110 112345677778899999999999876 4555521 1222222
Q ss_pred cCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 242 GRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 242 GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
| +.+-++|.- -=+-|+.+++|.++...++..++|.
T Consensus 152 --G----y~TkyGDg~---~d~~Pi~~L~KtqV~~La~~l~ipe 186 (268)
T COG0171 152 --G----YFTKYGDGA---VDINPIADLYKTQVYALARHLGIPE 186 (268)
T ss_pred --C----ceecccCcc---cChhhhcCCcHHHHHHHHHHcCCCH
Confidence 2 122222222 2378999999999999999999874
No 88
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=97.66 E-value=0.00058 Score=64.01 Aligned_cols=146 Identities=12% Similarity=0.113 Sum_probs=89.3
Q ss_pred CCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCcEEEEec
Q 012855 91 GGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPI 170 (455)
Q Consensus 91 GG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l 170 (455)
.|.+|+|||||+.+. ..++.|+|||.|...+ +..+.+.++.+++ |++++++.-
T Consensus 1 f~~~s~Vll~L~~~~-----------------~~~~~vifvDTg~~Fp-------ET~~~~d~~~~~~---~l~i~~~~~ 53 (191)
T TIGR02055 1 LGAEDVVLVDLAAKV-----------------RPDVKVFFLDTGRLFK-------ETYETIDQVRERY---DILIDVLSP 53 (191)
T ss_pred CChHHHHHHHHHHhc-----------------CCCCcEEEecCCCCCH-------HHHHHHHHHHHHh---CCceEEEcC
Confidence 489999999999875 2245689999996332 4677788888887 677766532
Q ss_pred cccccCCCCChhHHHHHHHhh--cCC-CCC-HHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccCCCC
Q 012855 171 ESIFCSNPCDGRERFKKLVDS--VSD-ATG-KEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYS 246 (455)
Q Consensus 171 ~~v~~~~~~~~~~~L~~ll~~--~~s-~ts-red~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~GrG~s 246 (455)
.. +. ..++... .+. ... +...|..++-.=|.++.++ .+.+++|--.++-.......+.
T Consensus 54 ~~-------~~---~~~~~~~~G~~~~~~~~~~~cc~~~K~~Pl~~~l~~--~~~~i~G~Rr~Es~~R~~~~~~------ 115 (191)
T TIGR02055 54 PP-------LT---VEEQVKEYGLNLFYRSVPHECCGIRKVEPLKRALAG--VSAWITGLRRDQSPTRAQAPFL------ 115 (191)
T ss_pred Cc-------cc---HHHHHHHcCcccccccchHHHHHHHhHHHHHHHHhc--CCEEEEEeccccCchhcCCcee------
Confidence 10 00 1111111 111 012 4455666666666666553 5677777555544332221110
Q ss_pred CCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 247 LPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 247 l~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
. .+..+++..++||.+-+..||-.|...++||+..
T Consensus 116 ----~--~~~~~~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~np 150 (191)
T TIGR02055 116 ----E--IDEAFGLVKINPLADWTSEDVWEYIADNELPYNP 150 (191)
T ss_pred ----e--ecCCCCeEEEEecccCCHHHHHHHHHHcCCCCCh
Confidence 0 1122345678999999999999999999998854
No 89
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=97.65 E-value=0.0014 Score=62.77 Aligned_cols=135 Identities=18% Similarity=0.126 Sum_probs=82.9
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEE-EEE-EeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVG-VVF-VDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~-vv~-VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
|+++.+|||+||+..|+.+.+. +++. +++ +..+. ..+-.+ ....+.++..++.+
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~------------------~~V~~L~~~~~~~~-~s~~~h--~~~~~~~~~qA~al--- 57 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE------------------HEVISLVGVFSENE-ESYMFH--SPNLHLTDLVAEAV--- 57 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc------------------CeeEEEEEEcCCCC-Cccccc--cCCHHHHHHHHHHc---
Confidence 6899999999999999877541 2222 222 22221 111111 12346678888888
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhc
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVK 241 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~ 241 (455)
|+|++.+..... .++.... |.+.+++.|++.|++|+-..+---+-+.+++.
T Consensus 58 giPl~~~~~~~~------------------------~e~~~~~-----l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~ 108 (222)
T TIGR00289 58 GIPLIKLYTSGE------------------------EEKEVED-----LAGQLGELDVEALCIGAIESNYQKSRIDKVCR 108 (222)
T ss_pred CCCeEEEEcCCc------------------------hhHHHHH-----HHHHHHHcCCCEEEECccccHHHHHHHHHHHH
Confidence 789876654311 1111222 22333666999999998876655555555553
Q ss_pred cCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 242 GRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 242 GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
. -++..+.||......++..+. ..|+..+.
T Consensus 109 ~---------------~gl~~~~PLW~~d~~~l~e~i-~~Gf~aiI 138 (222)
T TIGR00289 109 E---------------LGLKSIAPLWHADPEKLMYEV-AEKFEVII 138 (222)
T ss_pred H---------------cCCEEeccccCCCHHHHHHHH-HcCCeEEE
Confidence 3 346789999999998887655 56777654
No 90
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.50 E-value=0.0015 Score=69.10 Aligned_cols=160 Identities=12% Similarity=0.147 Sum_probs=94.2
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
++++.++.|||.|| |||||+.+. +-.+-|++||+|...+ +..+.+.++.++|
T Consensus 115 ~~~iavasSG~eds-vLlhl~~~~-----------------~~~ipV~flDTG~lFp-------ETy~~~d~v~~~y--- 166 (463)
T TIGR00424 115 GNDIAIAFSGAEDV-ALIEYAHLT-----------------GRPFRVFSLDTGRLNP-------ETYRFFDAVEKQY--- 166 (463)
T ss_pred CCCEEEEeccHHHH-HHHHHHHHh-----------------CCCCcEEEecCCCCCH-------HHHHHHHHHHHHh---
Confidence 45899999977775 689988765 2235699999996443 4677777777777
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhh--cC--CCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHH-HHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDS--VS--DATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIA-CHVI 236 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~--~~--s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlA-et~L 236 (455)
|+.++++.-+. . ...++... +. ..+.+...|+..+-.=|.+... +++..++|--.++-+ ...-
T Consensus 167 gl~l~~~~p~~-------~---~~~~~~~~~G~~~~~~~~~~~CC~irKVePL~raL~--~~~awitG~Rr~Qs~~tRa~ 234 (463)
T TIGR00424 167 GIRIEYMFPDA-------V---EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLKAWITGQRKDQSPGTRSE 234 (463)
T ss_pred CCceEEECCCc-------c---hHHHHHHhcCcccCCcCChHHHhhHHhHHHHHHHHH--hCCcEEeeeccccCcccccc
Confidence 56776542110 0 01111111 10 1124455666666555555554 456799994333321 1111
Q ss_pred HHHhccCCCCCCcccccc--cCC-CCcceEecCccccHHHHHHHHHHcCCCcccc
Q 012855 237 TATVKGRGYSLPADIQYA--DAR-WEIPVVLPLRDCLAQELNMLCQLDCLKTVEL 288 (455)
Q Consensus 237 ~nl~~GrG~sl~~~~~~~--~~~-~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~ 288 (455)
+.+ +.++..+. +.. .++..|.||.+-+..||-.|.+.++||+...
T Consensus 235 ~~~-------ve~d~~~~~~~~~~~~~iKvnPLa~Wt~~dVw~Yi~~~~LP~npL 282 (463)
T TIGR00424 235 IPV-------VQVDPVFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVNTL 282 (463)
T ss_pred CCc-------ccccccccccccCCCceEEEeecccCCHHHHHHHHHHcCCCCCch
Confidence 111 11111000 011 2367899999999999999999999998753
No 91
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=97.47 E-value=0.004 Score=62.21 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=101.9
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCC
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSP 160 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~ 160 (455)
.=++|.|+||||+||.+|||++.++..+. ++ -++.|+|||-.. .++ ...+.|++....+.
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~--------~~----~~i~VlfiD~E~--QYs-----~TidyV~em~~~~~- 85 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVAREN--------GR----DKISVLFIDWEA--QYS-----CTIDYVQEMRESYH- 85 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHh--------CC----CceEEEEEcchh--hhh-----hHHHHHHHHHhccc-
Confidence 34699999999999999999999876532 11 148899999532 233 35677777776542
Q ss_pred CCCc---EEEEeccccccCCC-------CC-h--hHHHH----H--HHhh-----cCCCCCHHHHHHHHHHHHHHHHHHH
Q 012855 161 PTKE---LHVIPIESIFCSNP-------CD-G--RERFK----K--LVDS-----VSDATGKEDLLLQLRMLSLQKFASE 216 (455)
Q Consensus 161 ~~i~---~~iv~l~~v~~~~~-------~~-~--~~~L~----~--ll~~-----~~s~tsred~~~~lRr~lL~~~A~~ 216 (455)
+-++ +..+|+.-.-+... .+ + ..=++ + +.+. ..-...-+++... +..=++++
T Consensus 86 dv~~~~yWvcLPl~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~----F~~Wl~~~ 161 (407)
T COG3969 86 DVIETFYWVCLPLTTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPA----FAAWLSQK 161 (407)
T ss_pred CccccceEEEeehhcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHH----HHHHHhcc
Confidence 2333 33466542111110 00 0 00000 0 0000 0012233444443 34445677
Q ss_pred cCCcEEEcccchhHHHHHHHHHHhccCCCCC---CcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcc
Q 012855 217 NGYNRLLLGLCTSRIACHVITATVKGRGYSL---PADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 217 ~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl---~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
++.+.+++|--+|.---.++.-.-+-++..- ||.+.. .....+--+.|+.|-.-.+|=.|...++.++-
T Consensus 162 ~~~ta~LvGiRadESlNRf~ai~~~~k~~~~~~~pWtt~~-~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~yN 233 (407)
T COG3969 162 RPATAVLVGIRADESLNRFNAIARKEKLRFADDKPWTTRI-FPNGHVWTFYPIYDWKVEDIWTANAKFSYAYN 233 (407)
T ss_pred CCceEEEEeecchhhHHHHHHHHHhhhcccCCCCCceeee-cCCCceEEEEecccchHHHHHHHHHhcCCccc
Confidence 7779999998877766665554433333211 243321 01223677899999999999777666665543
No 92
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0014 Score=64.53 Aligned_cols=160 Identities=15% Similarity=0.176 Sum_probs=92.6
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
.++++|+|||.|-++.|--|.+. ++++.+..-|-|- +++.+.+++-+...+ -
T Consensus 6 ~~vVLAySGgLDTscil~WLkeq-----------------GyeViay~AnvGQ---------~edfe~ar~kAlk~G--a 57 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQ-----------------GYEVIAYLANVGQ---------KEDFEEARKKALKSG--A 57 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhc-----------------CceEEEeeccccc---------hhhHHHHHHhhhhcC--c
Confidence 57999999999988877666553 8998888777662 134555666665553 2
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhc
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVD-SVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVK 241 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~-~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~ 241 (455)
..+.+..+.+.|-.+...+.-+-..+-+ ..--.|| +.|-.--+....+|++.||.+|.-| +.
T Consensus 58 kk~~~ed~~~eFvedfi~Pa~qs~a~YEd~YLLGTS---laRp~ia~~qv~va~~eg~~aVsHG--------------cT 120 (412)
T KOG1706|consen 58 KKVVVEDVREEFVEDFIWPALQSSALYEDRYLLGTS---LARPVIAKAQVDVAQREGAKAVSHG--------------CT 120 (412)
T ss_pred eEEEehhhhHHHHhhcchhhhhhcchhhceeeeccc---cccchhhhhhhhHHhhcCceeeecc--------------cc
Confidence 3444444443332211111000000000 0001122 3333334445689999999998777 45
Q ss_pred cCCCC-CCcccccccCCCCcceEecCcc-------ccHHHHHHHHHHcCCCccc
Q 012855 242 GRGYS-LPADIQYADARWEIPVVLPLRD-------CLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 242 GrG~s-l~~~~~~~~~~~~v~iiRPLrd-------l~~kEI~~Y~~~~~L~~~~ 287 (455)
|.|.. +.....+-.-.-++++|-|.|. --++++..||+.+|||...
T Consensus 121 GKGNDQvrFELt~ysl~P~~kviapwrmp~f~~rf~Gr~Dl~eYakq~giPvpv 174 (412)
T KOG1706|consen 121 GKGNDQVRFELTFYSLKPDVKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPV 174 (412)
T ss_pred cCCCcceeeeeeeeccCCcceeeccccchHHHHhhcCchHHHHHHHhcCCCccc
Confidence 66642 2222222112236889999886 3468999999999999765
No 93
>PLN02309 5'-adenylylsulfate reductase
Probab=97.35 E-value=0.003 Score=66.81 Aligned_cols=160 Identities=13% Similarity=0.159 Sum_probs=92.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+++|.++.|||.|| ||+||+.+. +-.+-|++||+|.+.+ +..+.+.++.++|
T Consensus 110 ~~~ia~~~SG~ed~-vll~l~~~~-----------------~~~ipV~flDTG~lfp-------ETy~~~d~v~~~y--- 161 (457)
T PLN02309 110 GNDIAIAFSGAEDV-ALIEYAHLT-----------------GRPFRVFSLDTGRLNP-------ETYRLFDAVEKHY--- 161 (457)
T ss_pred CCCEEEEecchHHH-HHHHHHHHh-----------------CCCCcEEEecCCCCCH-------HHHHHHHHHHHHh---
Confidence 46799999966665 788988754 1234599999996443 5777788888887
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhh--cC--CCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHH-HHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDS--VS--DATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIA-CHVI 236 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~--~~--s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlA-et~L 236 (455)
|++++++.-+. . .+.++... +. ..+.+...|++.+-.=|.+..+ +++..++|--.++-. ...=
T Consensus 162 gl~i~~~~P~~-------~---~~~~~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~--~~~awitG~Rr~Qs~~~Ra~ 229 (457)
T PLN02309 162 GIRIEYMFPDA-------V---EVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRAE 229 (457)
T ss_pred CCceEEECCCc-------c---hHHHHHHhcCccccccCChHHhhhhHhHHHHHHHHh--hCCEEEEeeccccCcccccc
Confidence 67776552110 0 11111110 10 1123445555555555555544 456888884333211 1100
Q ss_pred HHHhccCCCCCCcccccc--c-CCCCcceEecCccccHHHHHHHHHHcCCCcccc
Q 012855 237 TATVKGRGYSLPADIQYA--D-ARWEIPVVLPLRDCLAQELNMLCQLDCLKTVEL 288 (455)
Q Consensus 237 ~nl~~GrG~sl~~~~~~~--~-~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~ 288 (455)
+.+ +.++..+. + ...++..|.||.+.+..||-.|.+.++||+...
T Consensus 230 l~~-------ve~d~~~~~~~~~~~~~lKvnPl~~Wt~~dVw~Yi~~~~lP~npL 277 (457)
T PLN02309 230 VPV-------VQVDPVFEGLDGGPGSLVKWNPLANVTGNEVWNFLRTMDVPVNSL 277 (457)
T ss_pred CCe-------eeecccccccccCCCCeeEEcccccCCHHHHHHHHHHcCCCCCcc
Confidence 000 11111110 0 012367899999999999999999999998753
No 94
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.04 E-value=0.0016 Score=60.94 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=85.8
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
-|+.||+|||.||++-.-+|..+ + +.||++... .+ +... ....+.++-++
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~~-----------------g-----~~v~p~t~~-Lp-~~ir---~n~~~l~~~lg--- 110 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRWA-----------------G-----FTVDPGTAI-LP-DHIR---RNKEELETLLG--- 110 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHhh-----------------c-----eeecccccc-CC-HHHh---HHHHHHHHHHc---
Confidence 59999999999999888877653 3 567776422 11 1122 22333333332
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhc
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVD-SVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVK 241 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~-~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~ 241 (455)
.....+. +.+..+-. .+..+-.+|--|..+-.+.....|++.+.+.|++|+- ++.
T Consensus 111 ~~p~yve-------------edl~~i~kGalnGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDl-----------Ls~ 166 (255)
T COG1365 111 EVPEYVE-------------EDLEDIEKGALNGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDL-----------LST 166 (255)
T ss_pred cCHHHHH-------------HHHHHHHhhhccCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEccc-----------ccc
Confidence 1111111 11222221 2345567788899898888999999999999999973 233
Q ss_pred cCCCCCCcccccccCCCCcceEe-cCccccHHHHHHHHHHcCCCc
Q 012855 242 GRGYSLPADIQYADARWEIPVVL-PLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 242 GrG~sl~~~~~~~~~~~~v~iiR-PLrdl~~kEI~~Y~~~~~L~~ 285 (455)
|-|. +...|.. +.+-- -+..+++.|+...+.++++..
T Consensus 167 G~~s-----vy~eD~i--~rlnlPAflAltK~Elr~il~~~~~e~ 204 (255)
T COG1365 167 GYGS-----VYREDGI--FRLNLPAFLALTKDELRSILKWNGYEL 204 (255)
T ss_pred cccc-----eeccCCE--EEEccHHHHhhCcHHHHHHHHhcCccc
Confidence 4432 1111111 22223 367789999999999998754
No 95
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=96.82 E-value=0.015 Score=63.64 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCch
Q 012855 64 NLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSE 143 (455)
Q Consensus 64 ~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e 143 (455)
.+...+.+++.+. +. ....|.|.||||.||++++.+..++...... ... ..-.+..+.| |. .+ +
T Consensus 209 ~lr~~L~~aV~~r-l~-sdvpvgv~LSGGLDSSlIaala~~~~~~~~~----~~~---~~~~l~tfsi--g~-~~-~--- 272 (578)
T PLN02549 209 VLREAFEKAVIKR-LM-TDVPFGVLLSGGLDSSLVASIAARHLAETKA----ARQ---WGQQLHSFCV--GL-EG-S--- 272 (578)
T ss_pred HHHHHHHHHHHHH-hc-cCCceeEeecCCccHHHHHHHHHHhhhhccc----ccc---cCCCceEEec--CC-CC-C---
Confidence 3555555555542 22 3347999999999999999988765321000 000 0012223333 32 22 1
Q ss_pred hHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEE
Q 012855 144 IDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLL 223 (455)
Q Consensus 144 ~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~ 223 (455)
.+....+..++.+ |..+|.+.+.. .+..+.+..++..+.+.. +..+-..+-..++.+.|++.|+..|+
T Consensus 273 --~D~~~Ar~vA~~l---g~~h~ev~~~~------~e~~~~l~~~i~~le~~d-p~~~~~s~p~yll~r~a~~~gvkVvL 340 (578)
T PLN02549 273 --PDLKAAREVADYL---GTVHHEFHFTV------QEGIDAIEDVIYHLETYD-VTTIRASTPMFLMSRKIKSLGVKMVL 340 (578)
T ss_pred --CHHHHHHHHHHHh---CCCCeEEEECh------HHHHHHHHHHHHHhcCCC-CccchhHHHHHHHHHHHHhcCCEEEE
Confidence 1345677777877 56666665431 011123444443333210 00111122345677889999999999
Q ss_pred cccchhHH
Q 012855 224 LGLCTSRI 231 (455)
Q Consensus 224 lGh~~ddl 231 (455)
.|.-+|.+
T Consensus 341 sGeGaDEl 348 (578)
T PLN02549 341 SGEGSDEI 348 (578)
T ss_pred ecCchHhh
Confidence 99999999
No 96
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=96.80 E-value=0.044 Score=52.64 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=82.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEE-eCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFV-DETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~V-D~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
|+++-+||||||+..|+.+.+. . ... .++++ ..+. ..+..+ .-..+.++..++.+ |
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~---------------~v~-~L~t~~~~~~-~s~~~H--~~~~~~~~~qA~al---g 58 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-H---------------EVI-SLVNIMPENE-ESYMFH--GVNAHLTDLQAESI---G 58 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-C---------------eeE-EEEEEecCCC-Cccccc--ccCHHHHHHHHHHc---C
Confidence 5788999999999888876542 1 111 12222 2221 001000 01345677778887 7
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhcc
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKG 242 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~G 242 (455)
+|++.++... ..++.... |.+..++.|++.|++|+-..+---+-+.+++..
T Consensus 59 ipl~~~~~~~------------------------~~e~~~e~-----l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~ 109 (223)
T TIGR00290 59 IPLIKLYTEG------------------------TEEDEVEE-----LKGILHTLDVEAVVFGAIYSEYQKTRIERVCRE 109 (223)
T ss_pred CCeEEeecCC------------------------CccHHHHH-----HHHHHHHcCCCEEEECCcccHHHHHHHHHHHHh
Confidence 8886554321 01222222 223334458999999988665544455555432
Q ss_pred CCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 243 RGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 243 rG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
-++..+.||......|+..=.-..|+..+.
T Consensus 110 ---------------lgl~~~~PLW~~~~~~ll~e~i~~G~~aiI 139 (223)
T TIGR00290 110 ---------------LGLKSFAPLWHRDPEKLMEEFVEEKFEARI 139 (223)
T ss_pred ---------------cCCEEeccccCCCHHHHHHHHHHcCCeEEE
Confidence 346789999999999988777778888764
No 97
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=96.74 E-value=0.024 Score=48.30 Aligned_cols=98 Identities=20% Similarity=0.284 Sum_probs=63.0
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
+||||++|+..|.-++.....+... .+-+++++||.... .....++.++.++.+.+.+++. ++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~-------------~~~~l~ll~v~~~~-~~~~~~~~~~~l~~~~~~~~~~---~~ 63 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR-------------LKAPWYVVYVETPR-LNRLSEAERRRLAEALRLAEEL---GA 63 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH-------------hCCCEEEEEEecCc-cccCCHHHHHHHHHHHHHHHHc---CC
Confidence 5999999999999999887766432 14578899998753 2111222334455556666655 45
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHH
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRI 231 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddl 231 (455)
+.+++. +. + ....|.+++.+++++.|++|++...-
T Consensus 64 ~~~~~~-----~~--------------------~--------~~~~I~~~~~~~~~dllviG~~~~~~ 98 (124)
T cd01987 64 EVVTLP-----GD--------------------D--------VAEAIVEFAREHNVTQIVVGKSRRSR 98 (124)
T ss_pred EEEEEe-----CC--------------------c--------HHHHHHHHHHHcCCCEEEeCCCCCch
Confidence 443321 11 0 12346788999999999999886543
No 98
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=96.56 E-value=0.04 Score=61.65 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhc--------------CCCCCHHHHHHHHHHHHHH
Q 012855 146 NAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSV--------------SDATGKEDLLLQLRMLSLQ 211 (455)
Q Consensus 146 ~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~--------------~s~tsred~~~~lRr~lL~ 211 (455)
...+..+.+++.+ |+.++.++++.++.. ....+..+ ....+.+-+-.++|..++.
T Consensus 426 ~t~~~A~~la~~l---G~~~~~i~I~~~~~~--------~~~~~~~~~g~~~~f~~~~~~~~~d~~~~NiQAR~R~~~l~ 494 (700)
T PLN02339 426 ETRSRAKQLADEI---GSSHLDVKIDGVVSA--------VLSLFQTLTGKRPRYKVDGGSNAENLALQNIQARIRMVLAF 494 (700)
T ss_pred HHHHHHHHHHHHH---CCCEEEEeCHHHHHH--------HHHHhhhhcCCCccccccCCCcccchhhhcccHHHHHHHHH
Confidence 5667788999998 799999999865421 11122111 0112334555677888877
Q ss_pred HHHHHcC-----Cc-EEEcccc-hhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHH
Q 012855 212 KFASENG-----YN-RLLLGLC-TSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQ 279 (455)
Q Consensus 212 ~~A~~~g-----~~-~l~lGh~-~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~ 279 (455)
.+|...+ -. .|++|.. .+.+ +. -|.+-++|.-. =+-|+-+++|.+|..+++
T Consensus 495 ~~A~l~~~~~~~~g~~LvlgTgN~sE~--------~~------Gy~T~ygd~~~---~~~pi~~l~Kt~v~~l~~ 552 (700)
T PLN02339 495 MLASLLPWVRGKSGFLLVLGSANVDEG--------LR------GYLTKYDCSSA---DINPIGGISKQDLRSFLR 552 (700)
T ss_pred HHHhhcchhhccCCceEEEcCCCcchh--------he------eeeeecCCCCc---CccccCCCcHHHHHHHHH
Confidence 7775543 11 3555522 2211 11 12222222322 378999999999988744
No 99
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=96.53 E-value=0.017 Score=55.33 Aligned_cols=138 Identities=19% Similarity=0.126 Sum_probs=70.0
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK 163 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i 163 (455)
|+++-+||||||+..|+.+.+. ......+-.++++. ..+..+. -..+.++..++.+ |+
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~----------------~~v~~L~t~~~~~~-~s~~~H~--~~~~~~~~qA~al---gi 59 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ----------------HEVVCLLTMVPEEE-DSYMFHG--VNIELIEAQAEAL---GI 59 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----------------EEEEEEEEEESTT-T-SSS-S--TTGTCHHHHHHHH---T-
T ss_pred cEEEEEcCcHHHHHHHHHHHHh----------------CCccEEEEeccCCC-Ccccccc--cCHHHHHHHHHHC---CC
Confidence 6888899999999888766431 02233333444432 2111111 1234567777777 78
Q ss_pred cEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccC
Q 012855 164 ELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGR 243 (455)
Q Consensus 164 ~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~Gr 243 (455)
|+..+++... . ++.... |.+..++.+.+.|++|+-..+---+-+.+++..
T Consensus 60 pl~~~~~~g~---~---------------------~~~~~~-----l~~~l~~~~v~~vv~GdI~~~~~r~~~e~vc~~- 109 (218)
T PF01902_consen 60 PLIEIPTSGD---E---------------------EDYVED-----LKEALKELKVEAVVFGDIDSEYQRNWVERVCER- 109 (218)
T ss_dssp -EEEEEE------C---------------------CCHHHH-----HHHHHCTC--SEEE--TTS-HHHHHHHHHHHHH-
T ss_pred CEEEEEccCc---c---------------------chhhHH-----HHHHHHHcCCCEEEECcCCcHHHHHHHHHHHHH-
Confidence 9887776410 0 011111 122334566999999988644334444555533
Q ss_pred CCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 244 GYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 244 G~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
-++..+.||.....+|+..-.-..|+..+.
T Consensus 110 --------------lGl~~~~PLW~~d~~~ll~e~i~~Gf~aiI 139 (218)
T PF01902_consen 110 --------------LGLEAVFPLWGRDREELLREFIESGFEAII 139 (218)
T ss_dssp --------------CT-EEE-TTTT--HHHHHHHHHHTT-EEEE
T ss_pred --------------cCCEEEecccCCCHHHHHHHHHHCCCeEEE
Confidence 246789999999999998777777887764
No 100
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=96.25 E-value=0.067 Score=49.27 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=76.4
Q ss_pred EEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCc
Q 012855 85 VLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKE 164 (455)
Q Consensus 85 VLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~ 164 (455)
|||-+==||+|++-+..|.+. +|++.+.+-|+++ .|.. |-....+.++++++.+ +++
T Consensus 1 lLLH~CCaPCs~~~~~~L~~~-----------------g~~vt~~fyNPNI-hP~~--Ey~~R~~~~~~~~~~~---~i~ 57 (176)
T PF02677_consen 1 LLLHICCAPCSTYPLERLREE-----------------GFDVTGYFYNPNI-HPYE--EYERRLEELKRFAEKL---GIP 57 (176)
T ss_pred CeeeecCccccHHHHHHHHHC-----------------CCCeEEEEeCCCC-CcHH--HHHHHHHHHHHHHHHc---CCC
Confidence 456666789999888877653 7999999999996 6653 4455677888999988 677
Q ss_pred EEEEeccccccCCCCChhHHHHHH--HhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEc
Q 012855 165 LHVIPIESIFCSNPCDGRERFKKL--VDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLL 224 (455)
Q Consensus 165 ~~iv~l~~v~~~~~~~~~~~L~~l--l~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~l 224 (455)
+..-+ |+. ++=++.+ ++..+.+..||.+|-.+|-.--.++|+++|+++.-|
T Consensus 58 ~i~~~----Y~~-----~~w~~~v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtT 110 (176)
T PF02677_consen 58 LIEGD----YDP-----EEWLRAVKGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTT 110 (176)
T ss_pred EEecC----CCH-----HHHHHHHhhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 75433 221 1111111 122234567999999999999999999999998644
No 101
>PRK10490 sensor protein KdpD; Provisional
Probab=96.23 E-value=0.038 Score=63.61 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=65.7
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhC
Q 012855 80 TPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLS 159 (455)
Q Consensus 80 ~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~ 159 (455)
.-+++|||++||++.|-.|+.-=.++... .+-++.||||+.......+.++. ..+....++++++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~-------------~~a~~~~l~V~~~~~~~~~~~~~-~~l~~~~~lA~~l- 312 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAAR-------------LGSVWHAVYVETPRLHRLPEKKR-RAILSALRLAQEL- 312 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHh-------------cCCCEEEEEEecCCcCcCCHHHH-HHHHHHHHHHHHc-
Confidence 45689999999999998877765555331 14578899999753222222221 2222233588888
Q ss_pred CCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchh
Q 012855 160 PPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTS 229 (455)
Q Consensus 160 ~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~d 229 (455)
|.+++++.=+++ -..|.++|+++|++.|++|++..
T Consensus 313 --Ga~~~~~~~~dv---------------------------------a~~i~~~A~~~~vt~IViG~s~~ 347 (895)
T PRK10490 313 --GAETATLSDPAE---------------------------------EKAVLRYAREHNLGKIIIGRRAS 347 (895)
T ss_pred --CCEEEEEeCCCH---------------------------------HHHHHHHHHHhCCCEEEECCCCC
Confidence 567665542221 12367999999999999999864
No 102
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=96.13 E-value=0.064 Score=58.78 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCc
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSS 142 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~ 142 (455)
+.+...+..++.+. + .....|-+.||||.||++++.++.++..... .+.. ......++...|.. .+ +
T Consensus 220 ~~lr~~L~~AV~~r-l-~sdvpvGv~LSGGLDSSlIaala~~~~~~~~--~~~~---~~~~~~l~tfsig~---~~-~-- 286 (586)
T PTZ00077 220 EEIREALEAAVRKR-L-MGDVPFGLFLSGGLDSSIVAAIVAKLIKNGE--IDLS---KRGMPKLHSFCIGL---EG-S-- 286 (586)
T ss_pred HHHHHHHHHHHHHH-h-cCCCceEEEecCCchHHHHHHHHHHhhcccc--cccc---cccCCCceEEEcCC---CC-C--
Confidence 34556666666543 2 2345899999999999999998876532100 0000 00001233334321 21 1
Q ss_pred hhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCC---CCHHHHHHHHHHHHHHHHHHHcCC
Q 012855 143 EIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDA---TGKEDLLLQLRMLSLQKFASENGY 219 (455)
Q Consensus 143 e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~---tsred~~~~lRr~lL~~~A~~~g~ 219 (455)
.+...++..++.+ |.++|.+.+.. .+..+.+.+++..+.+. +.+. .+-..++.+.|++.|+
T Consensus 287 ---~D~~~Ar~vA~~l---g~~h~~i~~~~------~e~~~~l~~~i~~le~~~~~~~~~----~~p~yll~r~a~~~gv 350 (586)
T PTZ00077 287 ---PDLKAARKVAEYL---GTEHHEFTFTV------EEGIDALPDVIYHTETYDVTTIRA----STPMYLLSRRIKALGI 350 (586)
T ss_pred ---chHHHHHHHHHHh---CCcCcEEEECH------HHHHHHHHHHHHHhcCCCCCCcch----HHHHHHHHHHHHhcCC
Confidence 1345677777777 56666665421 01122344444333321 2222 2234567788999999
Q ss_pred cEEEcccchhHH
Q 012855 220 NRLLLGLCTSRI 231 (455)
Q Consensus 220 ~~l~lGh~~ddl 231 (455)
..|+.|.-+|.+
T Consensus 351 kVvLsGeGaDEl 362 (586)
T PTZ00077 351 KMVLSGEGSDEL 362 (586)
T ss_pred eEEEecCchhhh
Confidence 999999999988
No 103
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=96.02 E-value=0.1 Score=56.89 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCC-CceEEEEEEEeCCCCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSL-PVFGVGVVFVDETAYYPVPS 141 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~-~~f~l~vv~VD~~~~~~~s~ 141 (455)
+.+...+.+++.+. + .....|-|.||||.||++++.++.++..+... ...+.. ..-.++.+.|... + +
T Consensus 210 ~~lr~~L~~aV~~r-l-~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~----~~~~~~~~~~~l~tfsig~~---~-~- 278 (554)
T PRK09431 210 NELRDALEAAVKKR-L-MSDVPYGVLLSGGLDSSLISAIAKKYAARRIE----DDERSEAWWPQLHSFAVGLE---G-S- 278 (554)
T ss_pred HHHHHHHHHHHHHH-h-cCCCceEEEcCCCccHHHHHHHHHHhhccccc----ccccccccCCCceEEEEeCC---C-C-
Confidence 44566666666543 3 23458999999999999999988765321000 000000 0012344444322 1 1
Q ss_pred chhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCC--C-CCHHHHHHHHHHHHHHHHHHHcC
Q 012855 142 SEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSD--A-TGKEDLLLQLRMLSLQKFASENG 218 (455)
Q Consensus 142 ~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s--~-tsred~~~~lRr~lL~~~A~~~g 218 (455)
.+...++..++.+ |..+|.+.+.. .+..+.|.+++..+.+ . +.+. .+-..++.+.|++.|
T Consensus 279 ----~D~~~A~~vA~~l---g~~h~~v~~t~------~e~~~~l~~vi~~le~~dp~~~~~----~~p~yll~~~~~~~g 341 (554)
T PRK09431 279 ----PDLKAAREVADHL---GTVHHEIHFTV------QEGLDALRDVIYHLETYDVTTIRA----STPMYLMARKIKAMG 341 (554)
T ss_pred ----ChHHHHHHHHHHh---CCccEEEEeCH------HHHHHHHHHHHHHHhccCCccchh----HHHHHHHHHHHHHcC
Confidence 1345677777777 56777665531 0111234444433322 1 2222 223455677777789
Q ss_pred CcEEEcccchhHHH
Q 012855 219 YNRLLLGLCTSRIA 232 (455)
Q Consensus 219 ~~~l~lGh~~ddlA 232 (455)
+..|+.|+-+|.+-
T Consensus 342 vkvvLsGeGaDElF 355 (554)
T PRK09431 342 IKMVLSGEGADELF 355 (554)
T ss_pred CEEEEecCchhhhh
Confidence 99999999988874
No 104
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=95.41 E-value=0.21 Score=54.89 Aligned_cols=134 Identities=17% Similarity=0.165 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCc
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSS 142 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~ 142 (455)
+.+...++.++... + .....|.+.||||.||++++.++.++.. . .+..+.|..........
T Consensus 243 ~~l~~~L~~AV~~r-l-~sd~pvg~~LSGGlDSs~Iaa~~~~~~~-------------~---~l~tftigf~~~~~~~~- 303 (589)
T TIGR03104 243 DAILEALRLAVKRR-L-VADVPVGVLLSGGLDSSLIVGLLAEAGV-------------D---GLRTFSIGFEDVGGEKG- 303 (589)
T ss_pred HHHHHHHHHHHHHH-h-hcCCceeEEecCCccHHHHHHHHHHhcC-------------C---CceEEEEEecCCCCCCC-
Confidence 34566666666542 3 3346899999999999999888765411 0 12223332210000011
Q ss_pred hhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEE
Q 012855 143 EIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRL 222 (455)
Q Consensus 143 e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l 222 (455)
.+...++.+++.+ |.++|.+.+... +-.+.+..++........-... +=..++.+.|++ +++.|
T Consensus 304 ---dE~~~A~~vA~~~---g~~h~~i~~~~~------~~~~~l~~~v~~~~~P~~~~~~---~~~~~l~~~a~~-~~kV~ 367 (589)
T TIGR03104 304 ---DEFEYSDIIAERF---HTRHHKIRIPNH------RVLPALPEAVAAMSEPMVSHDC---VAFYLLSEEVSK-HVKVV 367 (589)
T ss_pred ---ChHHHHHHHHHHh---CCcCeEEEcCHH------HHHHHHHHHHHHhCCCCCCchH---HHHHHHHHHHhC-CCeEE
Confidence 1345567777777 567777665321 1112344444433222111111 223346676766 69999
Q ss_pred EcccchhHH
Q 012855 223 LLGLCTSRI 231 (455)
Q Consensus 223 ~lGh~~ddl 231 (455)
+.|+=+|.+
T Consensus 368 LsGeGaDEl 376 (589)
T TIGR03104 368 QSGQGADEV 376 (589)
T ss_pred eecCchHhc
Confidence 999999887
No 105
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=95.41 E-value=0.27 Score=53.46 Aligned_cols=136 Identities=17% Similarity=0.131 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCC
Q 012855 60 CFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPV 139 (455)
Q Consensus 60 CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~ 139 (455)
=..+.+...++.++.+. + .....|.+-+|||.||+++..++.+..... ... -.+|+... .+
T Consensus 210 ~~~~~l~~~l~~sV~~r-~-~advpvg~~lSGGlDSS~Iaa~a~~~~~~~-------------~~~--~fsvg~~~-~~- 270 (542)
T COG0367 210 ELAEHLRSLLEDAVKRR-L-VADVPVGVFLSGGLDSSLIAAIAAEELGKE-------------GKT--TFTVGFED-SD- 270 (542)
T ss_pred HHHHHHHHHHHHHHHHH-h-ccCCcEEEEeCCCccHHHHHHHHHHhcccc-------------cee--eeEeecCC-CC-
Confidence 33455666666666553 3 334579999999999999999998763210 000 23444321 11
Q ss_pred CCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 012855 140 PSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGY 219 (455)
Q Consensus 140 s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~ 219 (455)
. .+.+..+..++.++ .+.+.+.+.. .+-.+.+.+++..+..... +-..+=..++.+.|+++|+
T Consensus 271 -~----~D~~~a~~~A~~lg---~~h~~~~~~~------~e~~~~~~~vv~~~~~p~~---~~~~~ply~~~~~a~~~g~ 333 (542)
T COG0367 271 -S----PDAKYARAVAKFLG---TPHHEIILTN------EELLNALPEVVKALDTPGG---MAASIPLYLLSRKARAEGE 333 (542)
T ss_pred -C----chHHHHHHHHHHhC---CCcEEEeecH------HHHHHHHHHHHhhcCCCCc---ccchhHHHHHHHhhhhcCc
Confidence 1 14456677777774 4555444321 0112235555554444333 2233456778899999999
Q ss_pred cEEEcccchhHH
Q 012855 220 NRLLLGLCTSRI 231 (455)
Q Consensus 220 ~~l~lGh~~ddl 231 (455)
..|+.|+-+|.+
T Consensus 334 kVvLSGeGADEl 345 (542)
T COG0367 334 KVVLSGEGADEL 345 (542)
T ss_pred EEeecCccHHHH
Confidence 999999998876
No 106
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=95.22 E-value=1.1 Score=42.86 Aligned_cols=139 Identities=15% Similarity=0.088 Sum_probs=82.7
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEE-EEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGV-GVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l-~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
|+++=+||||||.-.+|...+. ++++ .+++|-+..-..+-.+ -...+.+.-+++.+ |
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~-----------------G~eV~~Ll~~~p~~~dS~m~H--~~n~~~~~~~Ae~~---g 59 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE-----------------GHEVVYLLTVKPENGDSYMFH--TPNLELAELQAEAM---G 59 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc-----------------CCeeEEEEEEecCCCCeeeee--ccchHHHHHHHHhc---C
Confidence 6788899999998888877543 5554 3344332210001100 01344555666666 6
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhcc
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKG 242 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~G 242 (455)
+|+......-. .+. -.+++ .++-+.++++.|+.|.-..+-=-+=+.++|.
T Consensus 60 i~l~~~~~~g~-------~e~-------------eve~L---------~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~- 109 (223)
T COG2102 60 IPLVTFDTSGE-------EER-------------EVEEL---------KEALRRLKVDGIVAGAIASEYQKERVERLCE- 109 (223)
T ss_pred CceEEEecCcc-------chh-------------hHHHH---------HHHHHhCcccEEEEchhhhHHHHHHHHHHHH-
Confidence 77654432210 000 11222 2233344588999997766655555666653
Q ss_pred CCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcccc
Q 012855 243 RGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVEL 288 (455)
Q Consensus 243 rG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~ 288 (455)
+.+++.+-||......|+..-.-..|+.++..
T Consensus 110 --------------~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv 141 (223)
T COG2102 110 --------------ELGLKVYAPLWGRDPEELLEEMVEAGFEAIIV 141 (223)
T ss_pred --------------HhCCEEeecccCCCHHHHHHHHHHcCCeEEEE
Confidence 23578899999999999998888888887753
No 107
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=95.20 E-value=0.27 Score=54.40 Aligned_cols=131 Identities=13% Similarity=0.120 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCc
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSS 142 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~ 142 (455)
+.+...+..++... + .....|.+.||||.||++++.++.+... -.+..+.|.... ...
T Consensus 241 e~l~~~l~~aV~~r-l-~~d~~vg~~LSGGlDSs~Iaa~~~~~~~----------------~~i~t~s~~~~~-~~~--- 298 (628)
T TIGR03108 241 AELIERLREAVRSR-M-VADVPLGAFLSGGVDSSAVVALMAGLSD----------------TPVNTCSIAFDD-PAF--- 298 (628)
T ss_pred HHHHHHHHHHHHHH-H-hcCCcceEeecCCccHHHHHHHHHHhcC----------------CCCcEEEEecCC-CCC---
Confidence 33555566666542 2 2345799999999999999888765310 012223333211 111
Q ss_pred hhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEE
Q 012855 143 EIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRL 222 (455)
Q Consensus 143 e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l 222 (455)
.+...++.+++.+ |.+++++.+... ..+.+..++.........-. .+-..++.+.|++ ++..|
T Consensus 299 ---dE~~~A~~vA~~~---g~~h~~~~~~~~-------~~~~~~~~~~~~~~P~~~~~---~~~~~~~~~~a~~-~~kV~ 361 (628)
T TIGR03108 299 ---DESAYARQVAERY---GTNHRVETVDPD-------DFSLVDRLAGLYDEPFADSS---ALPTYRVCELARK-RVTVA 361 (628)
T ss_pred ---ChHHHHHHHHHHh---CCCCeEEecCHH-------HHHHHHHHHHHhCCCCCCch---HHHHHHHHHHHHC-CCCEE
Confidence 1345566777777 577777765421 11123334332222221111 1222445566766 69999
Q ss_pred EcccchhHHH
Q 012855 223 LLGLCTSRIA 232 (455)
Q Consensus 223 ~lGh~~ddlA 232 (455)
+.|+-.|.+-
T Consensus 362 LsG~GgDElf 371 (628)
T TIGR03108 362 LSGDGGDELF 371 (628)
T ss_pred Eeccchhhcc
Confidence 9999999763
No 108
>PRK09982 universal stress protein UspD; Provisional
Probab=94.95 E-value=0.77 Score=40.34 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=29.3
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDET 134 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~ 134 (455)
.+||||+.|+..|.-+++....+.+. .+-+++++||-+.
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~-------------~~a~l~llhV~~~ 42 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARH-------------NDAHLTLIHIDDG 42 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHH-------------hCCeEEEEEEccC
Confidence 48999999999998888766665321 1458899999653
No 109
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=94.70 E-value=0.45 Score=53.16 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=68.1
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCC
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSP 160 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~ 160 (455)
-+++|||++||++.|--|..--..+... .+-+.+|||||..... ..++.....+....++++++
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~-------------~~a~~~av~v~~~~~~-~~~~~~~~~l~~~~~Lae~l-- 310 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASR-------------LHAKWTAVYVETPELH-RLSEKEARRLHENLRLAEEL-- 310 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHH-------------hCCCeEEEEEeccccc-cccHHHHHHHHHHHHHHHHh--
Confidence 3489999999999998877665555331 1457789999976422 22222234566677889998
Q ss_pred CCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHH
Q 012855 161 PTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRI 231 (455)
Q Consensus 161 ~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddl 231 (455)
|-++.++.=.++ . +.+.++|+.++.++|++|-+...-
T Consensus 311 -Gae~~~l~~~dv----------------------------~-----~~i~~ya~~~~~TkiViG~~~~~r 347 (890)
T COG2205 311 -GAEIVTLYGGDV----------------------------A-----KAIARYAREHNATKIVIGRSRRSR 347 (890)
T ss_pred -CCeEEEEeCCcH----------------------------H-----HHHHHHHHHcCCeeEEeCCCcchH
Confidence 567766542221 1 226689999999999999776543
No 110
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.38 E-value=0.68 Score=42.96 Aligned_cols=106 Identities=14% Similarity=0.228 Sum_probs=77.6
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
.+|||-.-=+|+|.-.|.-|.+. ++++.+.+-|+++ .|.+ |-....+.++++++.+ |
T Consensus 4 ~kiLlH~CCAPcs~y~le~l~~~-----------------~~~i~~yFYNPNI-hP~~--EY~~R~~e~~~f~~~~---~ 60 (204)
T COG1636 4 PKLLLHSCCAPCSGYVLEKLRDS-----------------GIKITIYFYNPNI-HPLS--EYELRKEEVKRFAEKF---G 60 (204)
T ss_pred CeeEEEeecCCCcHHHHHHHHhc-----------------CcceEEEEeCCCC-CchH--HHHHHHHHHHHHHHHc---C
Confidence 58999999999998877776542 6889999999995 6654 3344556788899998 6
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHh------hcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEE
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVD------SVSDATGKEDLLLQLRMLSLQKFASENGYNRLL 223 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~------~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~ 223 (455)
++|.--+ |.. ++.+++ ..+.+.-||..|=.+|-..-...|+++|++++-
T Consensus 61 i~~iegd----Y~~--------~~~w~~~vKg~E~EpE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ft 115 (204)
T COG1636 61 INFIEGD----YED--------LEKWFERVKGMEDEPEGGKRCTMCFDMRLEKTAKKAKELGFDVFT 115 (204)
T ss_pred CeeeecC----ccc--------HHHHHHHhhcchhCCCCCchhHhHHHHHHHHHHHHHHHcCCchhh
Confidence 7764322 210 222332 235667899999999999999999999998763
No 111
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=94.10 E-value=0.64 Score=38.64 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=59.9
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCC----CchhHHHHHHHHHHHHhhC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVP----SSEIDNAIQEIKLIVSNLS 159 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s----~~e~~~~~~~v~~~~~~l~ 159 (455)
+|||+++++..+..+++....+... .+.++.++||.... .... .....+..+.+..+.....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~-------------~~~~i~~l~v~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR-------------LGAELVLLHVVDPP-PSSAAELAELLEEEARALLEALREALA 66 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh-------------cCCEEEEEEEecCC-CCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999888776431 15688999997652 1110 0011122233444433321
Q ss_pred CCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhH
Q 012855 160 PPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSR 230 (455)
Q Consensus 160 ~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~dd 230 (455)
..+++++..-.. + .. ...|.+++.+.+++.|++|.+...
T Consensus 67 ~~~~~~~~~~~~---~--------------------~~---------~~~i~~~~~~~~~dlvvig~~~~~ 105 (130)
T cd00293 67 EAGVKVETVVLE---G--------------------DP---------AEAILEAAEELGADLIVMGSRGRS 105 (130)
T ss_pred cCCCceEEEEec---C--------------------CC---------HHHHHHHHHHcCCCEEEEcCCCCC
Confidence 135555433211 0 00 244778899999999999976543
No 112
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=93.13 E-value=0.79 Score=39.98 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=28.5
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
+||||++|+..|..++.....+.. ..+-+++++||-+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~-------------~~~~~l~ll~v~~ 37 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLA-------------TKGQTIVLVHVHP 37 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhcc-------------CCCCcEEEEEecc
Confidence 599999999999988887765521 1256889999964
No 113
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=93.05 E-value=0.69 Score=39.21 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=29.8
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDET 134 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~ 134 (455)
+|||++.|+.+|.-+|.....+... .+-+++++||-+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~-------------~~~~v~ll~v~~~ 38 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA-------------QNGEIIPLNVIEV 38 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc-------------CCCeEEEEEEEec
Confidence 5999999999999999888776421 2458889998653
No 114
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=92.03 E-value=2.6 Score=39.69 Aligned_cols=160 Identities=18% Similarity=0.197 Sum_probs=96.1
Q ss_pred CCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHh
Q 012855 78 LITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSN 157 (455)
Q Consensus 78 li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~ 157 (455)
+.+-+.-+.+++||- .-+||.+|++.+ +-.+.+++||.+.+.| +.......+-++
T Consensus 42 l~tf~~~~q~a~~G~-~~lvlid~~~~~-----------------~~~~~l~~idT~~~~P-------eT~~l~d~Vekk 96 (261)
T KOG0189|consen 42 LETFPNLFQTAASGL-EGLVLIDMLSKT-----------------GRPFRLFFIDTLHHFP-------ETLRLFDAVEKK 96 (261)
T ss_pred HHHhhhHHHHHhccc-cchHHHHHHHHc-----------------CCCceeEEeeccccCh-------HHHHHHHHHHHh
Confidence 344455677788765 447888998865 1224588999885444 233333344445
Q ss_pred hCCCCCcEEEEeccccccCCCCChhHHHHHHHhhc------CCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHH
Q 012855 158 LSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSV------SDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRI 231 (455)
Q Consensus 158 l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~------~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddl 231 (455)
++ +++.|+.--+.+ ..+.++.+. .+.-.+|+.++.. +=+.+.-+.++..++++|.-.+.-
T Consensus 97 Y~--~i~I~~~~pd~~----------e~ea~~~~K~~~~~~E~~~q~~~~l~KV--~P~~RA~k~L~v~A~~TGrRksQ~ 162 (261)
T KOG0189|consen 97 YG--NIRIHVYFPDAV----------EVEALFASKGGFSLWEDDHQEYDRLRKV--EPARRAYKGLNVKAVFTGRRKSQG 162 (261)
T ss_pred cC--ceEEEEEcchhH----------HHHHHHHhccchhheecCchhhhhhhhc--cHHHHHhhccceeeEEecccccCC
Confidence 53 566664422111 122223221 2333455555544 334455577888999999655421
Q ss_pred HHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcccc
Q 012855 232 ACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVEL 288 (455)
Q Consensus 232 Aet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~ 288 (455)
|.-..+|- ++ .|...++..|.||....-.++-.|.+.+++|+-+.
T Consensus 163 ----------gtRselpi-Vq-vD~~fellK~NPlaN~~~~dV~nyi~t~nVP~NeL 207 (261)
T KOG0189|consen 163 ----------GTRSELPI-VQ-VDPVFELLKINPLANWEFNDVWNYIRTNNVPYNEL 207 (261)
T ss_pred ----------Ccccccce-EE-ecCccceeeecccccccHHHHHHHHHhcCCcHHHH
Confidence 22223443 22 35667788999999999999999999999988653
No 115
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=91.76 E-value=3.3 Score=36.00 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=28.4
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
.+||||+.|...|...|.....+... .+-+++++||+.
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~-------------~~a~l~ll~v~~ 41 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARP-------------YNAKVSLIHVDV 41 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHh-------------hCCEEEEEEEcc
Confidence 48999999999998887766655321 145788999964
No 116
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=91.27 E-value=0.87 Score=47.52 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=45.4
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceE-EEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFG-VGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~-l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
.+|.|-||||+||++++++++...... +.++ |-|.+.++....+..-.++.....-++++..-+ |
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp~n------------e~IdLINVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~--P 316 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVPEN------------EPIDLINVAFGNPEGSKEQNVPDRKTGRRGLEELQSLY--P 316 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcCCC------------CceeEEEeeccCCCcccccCCccHHHHHHHHHHHHHhC--C
Confidence 589999999999999999999864311 1233 344444432223332124555566677776554 4
Q ss_pred CCcEEEEecc
Q 012855 162 TKELHVIPIE 171 (455)
Q Consensus 162 ~i~~~iv~l~ 171 (455)
.-.|..|+++
T Consensus 317 ~R~~nlV~vn 326 (520)
T KOG0573|consen 317 KRSWNLVEVN 326 (520)
T ss_pred cceEEEEecc
Confidence 5556556543
No 117
>PRK15005 universal stress protein F; Provisional
Probab=90.79 E-value=1.2 Score=38.69 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCcEEEcccchhHH
Q 012855 209 SLQKFASENGYNRLLLGLCTSRI 231 (455)
Q Consensus 209 lL~~~A~~~g~~~l~lGh~~ddl 231 (455)
.|.++|.+++++.|++|.+...+
T Consensus 98 ~I~~~a~~~~~DLIV~Gs~~~~~ 120 (144)
T PRK15005 98 RILELAKKIPADMIIIASHRPDI 120 (144)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCc
Confidence 36678999999999999775433
No 118
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=89.75 E-value=1.3 Score=36.95 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=44.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCC--CCCCC-----CCchhHHHHHHHHHHHH
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDET--AYYPV-----PSSEIDNAIQEIKLIVS 156 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~--~~~~~-----s~~e~~~~~~~v~~~~~ 156 (455)
+|||+.+||.+|++|..-+.+..++. + ..+++.++-+.+- ....+ .+ ...-..+.+++.+.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~----------g-i~~~i~a~~~~e~~~~~~~~Dvill~P-Qv~~~~~~i~~~~~ 69 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKER----------G-VPLEAAAGAYGSHYDMIPDYDLVILAP-QMASYYDELKKDTD 69 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----------C-CcEEEEEeeHHHHHHhccCCCEEEEcC-hHHHHHHHHHHHhh
Confidence 69999999999999999998875531 1 1234444433210 00000 00 01223456777776
Q ss_pred hhCCCCCcEEEEecccccc
Q 012855 157 NLSPPTKELHVIPIESIFC 175 (455)
Q Consensus 157 ~l~~~~i~~~iv~l~~v~~ 175 (455)
.. |+|+.+++..+ |+
T Consensus 70 ~~---~ipv~~I~~~~-Yg 84 (99)
T cd05565 70 RL---GIKLVTTTGKQ-YI 84 (99)
T ss_pred hc---CCCEEEeCHHH-Hh
Confidence 65 78988877543 44
No 119
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=88.27 E-value=9.9 Score=31.52 Aligned_cols=39 Identities=33% Similarity=0.453 Sum_probs=31.1
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDET 134 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~ 134 (455)
.+|||+++|+..|..++.....+.... +-+++++||-+.
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~-------------~~~i~~l~v~~~ 41 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRS-------------GAEITLLHVIPP 41 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHH-------------TCEEEEEEEEES
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhh-------------CCeEEEEEeecc
Confidence 489999999999999998777664321 568999999765
No 120
>PRK15456 universal stress protein UspG; Provisional
Probab=85.84 E-value=5.2 Score=34.77 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.8
Q ss_pred HHHHHHHcCCcEEEcccchhH
Q 012855 210 LQKFASENGYNRLLLGLCTSR 230 (455)
Q Consensus 210 L~~~A~~~g~~~l~lGh~~dd 230 (455)
|.++|++++++.|++|++...
T Consensus 97 I~~~a~~~~~DLIVmG~~g~~ 117 (142)
T PRK15456 97 VNELAEELGADVVVIGSRNPS 117 (142)
T ss_pred HHHHHhhcCCCEEEEcCCCCC
Confidence 557899999999999988643
No 121
>PRK10116 universal stress protein UspC; Provisional
Probab=85.30 E-value=23 Score=30.39 Aligned_cols=28 Identities=4% Similarity=0.144 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCcEEEcccchhHHHHHHH
Q 012855 209 SLQKFASENGYNRLLLGLCTSRIACHVI 236 (455)
Q Consensus 209 lL~~~A~~~g~~~l~lGh~~ddlAet~L 236 (455)
.+.++|++.+++-|++|++...-...++
T Consensus 93 ~I~~~a~~~~~DLiV~g~~~~~~~~~~~ 120 (142)
T PRK10116 93 HILEVCRKHHFDLVICGNHNHSFFSRAS 120 (142)
T ss_pred HHHHHHHHhCCCEEEEcCCcchHHHHHH
Confidence 3568899999999999988765444444
No 122
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=84.92 E-value=6.9 Score=40.91 Aligned_cols=134 Identities=15% Similarity=0.119 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchh
Q 012855 65 LFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEI 144 (455)
Q Consensus 65 i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~ 144 (455)
+++-|.+++.|.-|- .-.+-|-||||.||+....+..+..++++.. + +-.++.+-|-. . .|+
T Consensus 210 ~r~~~~~aV~KRLM~--d~p~GvLLSGGLDSSLvAsia~R~lk~~~~~------~---~~~lhsFaIGl---e-~SP--- 271 (543)
T KOG0571|consen 210 LRHTLEKAVRKRLMT--DVPFGVLLSGGLDSSLVASIAARELKKAQAA------R---GSKLHSFAIGL---E-DSP--- 271 (543)
T ss_pred HHHHHHHHHHHHhhc--cCceeEEeeCCchHHHHHHHHHHHHHHhhhh------c---CCCceEEEecC---C-CCh---
Confidence 445555555554332 2368899999999998888776543332211 1 22444444431 2 222
Q ss_pred HHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCC---CCCHHHHHHHHHHHHHHHHHHHcCCcE
Q 012855 145 DNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSD---ATGKEDLLLQLRMLSLQKFASENGYNR 221 (455)
Q Consensus 145 ~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s---~tsred~~~~lRr~lL~~~A~~~g~~~ 221 (455)
++...++.++-+ |.+.|..-+. . .++-+.|++++-.+.+ .|-|++ .-..||.+.-+++|...
T Consensus 272 --DL~aarkVAd~i---gt~Hhe~~ft----~--qegidal~eVI~hLETYDvttIRas----tpmyLlsr~Ikk~gvkm 336 (543)
T KOG0571|consen 272 --DLLAARKVADFI---GTIHHEHTFT----I--QEGIDALDEVIYHLETYDVTTIRAS----TPMYLLSRKIKKLGVKM 336 (543)
T ss_pred --hHHHHHHHHHHh---CCcceEEEEc----H--HHHHHHHHHHheeeeccccceEecC----CchHHHHHHHHhcceEE
Confidence 334445555444 4555543321 1 1122234444433322 111221 12567778888999888
Q ss_pred EEcccchhHH
Q 012855 222 LLLGLCTSRI 231 (455)
Q Consensus 222 l~lGh~~ddl 231 (455)
|+-|.-+|.+
T Consensus 337 vlSGEGsDEi 346 (543)
T KOG0571|consen 337 VLSGEGSDEI 346 (543)
T ss_pred EEecCCchhh
Confidence 8888887765
No 123
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=84.46 E-value=0.79 Score=33.75 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=23.2
Q ss_pred CccccccCCCCCceecCCCCCCcHHHHHHHHH
Q 012855 35 QNLCVKCKANEPTPGAGEDGKHCLDCFRSNLF 66 (455)
Q Consensus 35 ~~~C~kCk~~~av~~~r~~~~~C~~CF~~~i~ 66 (455)
+..|..|+...++|.-=+.. +|+.||.++..
T Consensus 16 sr~C~vCg~~~gliRkygL~-~CRqCFRe~A~ 46 (54)
T PTZ00218 16 SRQCRVCSNRHGLIRKYGLN-VCRQCFRENAE 46 (54)
T ss_pred CCeeecCCCcchhhhhcCcc-hhhHHHHHhhH
Confidence 36799999987655332566 99999998753
No 124
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=83.33 E-value=5.6 Score=33.53 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=44.5
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCC------CC----CchhHHHHHHHHH
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYP------VP----SSEIDNAIQEIKL 153 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~------~s----~~e~~~~~~~v~~ 153 (455)
||||+..+|.+|+.|+..+.+..++. ++++.+-++..+.+.. ++ .....-..+.+++
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~-------------gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~ 69 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQ-------------GKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEE 69 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHC-------------CCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHH
Confidence 79999999999999888887765431 4444444443321110 00 0011223455677
Q ss_pred HHHhhCCCCCcEEEEecccccc
Q 012855 154 IVSNLSPPTKELHVIPIESIFC 175 (455)
Q Consensus 154 ~~~~l~~~~i~~~iv~l~~v~~ 175 (455)
.+... ++|+.+++-.+ |+
T Consensus 70 ~~~~~---~ipv~~I~~~~-Y~ 87 (104)
T PRK09590 70 AGAKV---GKPVVQIPPQA-YI 87 (104)
T ss_pred Hhhhc---CCCEEEeCHHH-cC
Confidence 77665 78998887643 55
No 125
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=77.95 E-value=6.6 Score=32.41 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=41.9
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCC----CCCC----CchhHHHHHHHHHH
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAY----YPVP----SSEIDNAIQEIKLI 154 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~----~~~s----~~e~~~~~~~v~~~ 154 (455)
.+|||++.+|.+|+.|+.-+.+...+. ++++.+-++..+.+ ..++ ........+.+++.
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~-------------gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~ 70 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEY-------------GVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKE 70 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHC-------------CCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHH
Confidence 489999999999998777666654321 44444444432111 0000 00122345567777
Q ss_pred HHhhCCCCCcEEEEecc
Q 012855 155 VSNLSPPTKELHVIPIE 171 (455)
Q Consensus 155 ~~~l~~~~i~~~iv~l~ 171 (455)
+..+ ++|+.+++-.
T Consensus 71 ~~~~---~ipv~~I~~~ 84 (95)
T TIGR00853 71 TDKK---GIPVEVINGA 84 (95)
T ss_pred hhhc---CCCEEEeChh
Confidence 7665 6888777654
No 126
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=77.90 E-value=25 Score=33.46 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPS 141 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~ 141 (455)
++|...++.++.+ ..++.||||||..=..++..|.... ...| ++++.++||-.+...++
T Consensus 9 ~~i~~~i~~~i~~------~~~~~l~lsGGstp~~~y~~L~~~~--------------~i~w~~v~~f~~DEr~Vp~~~~ 68 (219)
T cd01400 9 DRIAEALAAAIAK------RGRFSLALSGGSTPKPLYELLAAAP--------------ALDWSKVHVFLGDERCVPPDDP 68 (219)
T ss_pred HHHHHHHHHHHHh------cCeEEEEECCCccHHHHHHHhcccc--------------CCCCceEEEEEeeccccCCCCc
Confidence 3455555555543 3589999999999888887776431 1134 68899999986544332
Q ss_pred chhHHHHHHHHHHH
Q 012855 142 SEIDNAIQEIKLIV 155 (455)
Q Consensus 142 ~e~~~~~~~v~~~~ 155 (455)
+.....+++..
T Consensus 69 ---~Sn~~~~~~~l 79 (219)
T cd01400 69 ---DSNYRLAREAL 79 (219)
T ss_pred ---ccHHHHHHHHh
Confidence 24455566543
No 127
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=77.31 E-value=17 Score=37.48 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=28.6
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
.|||||+.|+..|.-.+..-.++.+.. ..+-+++++||-+
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~-----------g~~AeL~lL~Vv~ 45 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEA-----------AETPTVHLVAAAS 45 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhc-----------CCCCEEEEEEEec
Confidence 589999999999988777666653210 0035888999854
No 128
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=72.37 E-value=2.7 Score=31.83 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=21.7
Q ss_pred CccccccCCCCCceecCCCCCCcHHHHHHHH
Q 012855 35 QNLCVKCKANEPTPGAGEDGKHCLDCFRSNL 65 (455)
Q Consensus 35 ~~~C~kCk~~~av~~~r~~~~~C~~CF~~~i 65 (455)
...|..|+.+.+++ |+-. +|+-||.+..
T Consensus 21 ~nRC~~cGRprg~~--Rkf~-lcR~cfRE~A 48 (61)
T COG0199 21 RNRCRRCGRPRGVI--RKFG-LCRICFRELA 48 (61)
T ss_pred cccccccCCCccch--hhhh-hHHHHHHHHh
Confidence 46799999877654 5555 9999998764
No 129
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=70.53 E-value=11 Score=31.02 Aligned_cols=24 Identities=17% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEecCCccHHHHHHHHHHHHH
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQ 107 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~ 107 (455)
|||++..+|..|+.|+.-+.+...
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~ 24 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAE 24 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHH
Confidence 599999999999988887776544
No 130
>PRK11175 universal stress protein UspE; Provisional
Probab=63.79 E-value=66 Score=31.53 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCcEEEcccchh
Q 012855 209 SLQKFASENGYNRLLLGLCTS 229 (455)
Q Consensus 209 lL~~~A~~~g~~~l~lGh~~d 229 (455)
.|.++|++.+++.|++|++.-
T Consensus 252 ~I~~~a~~~~~DLIVmG~~~~ 272 (305)
T PRK11175 252 VIPDLAEHLDAELVILGTVGR 272 (305)
T ss_pred HHHHHHHHhCCCEEEECCCcc
Confidence 366889999999999998644
No 131
>PLN02360 probable 6-phosphogluconolactonase
Probab=63.78 E-value=1.2e+02 Score=29.81 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=32.5
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCCchhHHHHHHHHH
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPSSEIDNAIQEIKL 153 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~~e~~~~~~~v~~ 153 (455)
+...+-||||||. ..-++..|..... .....| ++++..+||-.+...++ +.....+++
T Consensus 40 ~~~~~~lalsGGS-~~~~~~~L~~~~~-----------~~~idW~~v~~f~~DER~Vp~~~~---~SN~~~~r~ 98 (268)
T PLN02360 40 ERGVFAIALSGGS-LISFMGKLCEAPY-----------NKTVDWAKWYIFWADERVVAKNHA---DSNYKLAKD 98 (268)
T ss_pred hCCcEEEEECCCC-HHHHHHHHhcccc-----------ccCCCCceEEEEeeecccCCCCCc---chHHHHHHH
Confidence 4568999999994 3334443322100 011244 68899999986544332 234455554
No 132
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=60.79 E-value=1.5e+02 Score=28.90 Aligned_cols=60 Identities=17% Similarity=0.101 Sum_probs=38.7
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCC-CCCCCCchhHHHHHHHHHH
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETA-YYPVPSSEIDNAIQEIKLI 154 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~-~~~~s~~e~~~~~~~v~~~ 154 (455)
..+++.|+||||..-..++..|...... ....| +++++++||-. +....+ +.....+++.
T Consensus 31 ~~~~~~i~lsgGstP~~~y~~L~~~~~~-----------~~i~w~~v~~f~~DEr~~vp~~~~---~Sn~~~~~~~ 92 (259)
T TIGR00502 31 AARPFVLGLPTGGTPIGTYKQLIELHQA-----------GKISFQNVTTFNMDEYAGLSEEHP---ESYHSFMHNN 92 (259)
T ss_pred ccCceEEEEcCCCChHHHHHHHHHHhhc-----------cCCchhHeEEEeCeecCCCCCCch---HHHHHHHHHH
Confidence 3568999999999998998888754221 11234 68899999973 443322 2344455543
No 133
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=59.37 E-value=25 Score=27.88 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=27.5
Q ss_pred EEEEEecCCccHHHHH-HHHHHHHHHHhhccccccCCCCCceEEEEEEEe
Q 012855 84 NVLVAFSGGPSSRVAL-QFVHELQQRAQKNFDASKDRSLPVFGVGVVFVD 132 (455)
Q Consensus 84 kVLValSGG~dS~vLL-~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD 132 (455)
|||+++.+|..|+.|+ .-|.+...+ .++++.+.+..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~-------------~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKE-------------LGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHH-------------TTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHh-------------ccCceEEEEec
Confidence 7999999999999998 777765442 15777777766
No 134
>PRK11175 universal stress protein UspE; Provisional
Probab=58.66 E-value=99 Score=30.30 Aligned_cols=23 Identities=4% Similarity=-0.073 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCcEEEcccchhH
Q 012855 208 LSLQKFASENGYNRLLLGLCTSR 230 (455)
Q Consensus 208 ~lL~~~A~~~g~~~l~lGh~~dd 230 (455)
..|.++|++.+++.|++|++...
T Consensus 97 ~~i~~~a~~~~~DLiV~G~~~~~ 119 (305)
T PRK11175 97 EAIIQEVIAGGHDLVVKMTHQHD 119 (305)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCc
Confidence 34678899999999999988654
No 135
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=58.60 E-value=1.4e+02 Score=26.96 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPS 141 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~ 141 (455)
.++.......+.+ ++.+.||+|||..=..++..|.+.... . .| +++++++|+-.+...++
T Consensus 6 ~~i~~~i~~~~~~------~~~~~i~lsgGsTp~~~y~~L~~~~~~-----------~--~w~~v~~f~~DEr~v~~~~~ 66 (169)
T cd00458 6 KFIEDKXEKLLEE------KDDMVIGLGTGSTPAYFYKLLGEKLKR-----------G--EISDIVGFPTDERYVPLDSD 66 (169)
T ss_pred HHHHHHHHHHHHh------CCCEEEEECCCccHHHHHHHHHhhhhh-----------C--CccceEEEECccccCCCCCc
Confidence 4455555554433 457999999999888888888654211 0 23 68889999975433222
Q ss_pred chhHHHHHHHHHHH
Q 012855 142 SEIDNAIQEIKLIV 155 (455)
Q Consensus 142 ~e~~~~~~~v~~~~ 155 (455)
+.....+++.+
T Consensus 67 ---~Sn~~~~~~~l 77 (169)
T cd00458 67 ---QSNFRQAKLLA 77 (169)
T ss_pred ---hHHHHHHHHHh
Confidence 24555566543
No 136
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=57.66 E-value=66 Score=30.88 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPS 141 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~ 141 (455)
++|....+.++.+ ..++.||||||..=..|+..|... ...| +++++.+||-.+.+.++
T Consensus 14 ~~i~~~i~~~i~~------~~~~~lalsGGstp~~~y~~L~~~---------------~i~w~~v~~f~~DER~Vp~~~~ 72 (233)
T TIGR01198 14 ERIATKLQTALAE------RGQFSLALSGGRSPIALLEALAAQ---------------PLDWSRIHLFLGDERYVPLDHA 72 (233)
T ss_pred HHHHHHHHHHHHh------cCcEEEEECCCccHHHHHHHHhhC---------------CCCcceEEEEEecccccCCCCc
Confidence 3444445554432 357999999999998888888642 0133 68899999976544332
Q ss_pred chhHHHHHHHHHH
Q 012855 142 SEIDNAIQEIKLI 154 (455)
Q Consensus 142 ~e~~~~~~~v~~~ 154 (455)
+.....+++.
T Consensus 73 ---~SN~~~~~~~ 82 (233)
T TIGR01198 73 ---DSNTGLAREA 82 (233)
T ss_pred ---cchHHHHHHH
Confidence 2344555544
No 137
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=55.55 E-value=59 Score=30.37 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPS 141 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~ 141 (455)
++|...++..+.+ .+++.||||||..-..+.+.|....+ . + ..| +++++.+||-.+...++
T Consensus 7 ~~i~~~i~~~i~~------~~~~~i~LsgGstp~~~y~~L~~~~~-~--~---------i~w~~v~~~~~DEr~v~~~~~ 68 (199)
T PF01182_consen 7 EAIAEAIEEAIAE------RGRAVIALSGGSTPKPLYQELAKLHK-E--R---------IDWSRVHFFNVDERVVPPDDP 68 (199)
T ss_dssp HHHHHHHHHHHHH------CSSEEEEE--SCTHHHHHHHHHHHHH-T--C---------SCGGGEEEEESEEESSTTTST
T ss_pred HHHHHHHHHHHHH------CCCEEEEEcCCHHHHHHHHHHhhhcc-c--c---------CChhHeEEEeCcccccCCCCC
Confidence 3445555555543 35799999999999999998887532 1 1 123 58899999975443322
Q ss_pred chhHHHHHHHHHHH
Q 012855 142 SEIDNAIQEIKLIV 155 (455)
Q Consensus 142 ~e~~~~~~~v~~~~ 155 (455)
+.....+++..
T Consensus 69 ---~Sn~~~~~~~l 79 (199)
T PF01182_consen 69 ---DSNYRMLREHL 79 (199)
T ss_dssp ---TSHHHHHHHHT
T ss_pred ---ccHHHHHHHHh
Confidence 24455566543
No 138
>PRK05766 rps14P 30S ribosomal protein S14P; Reviewed
Probab=54.95 E-value=15 Score=26.99 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=22.8
Q ss_pred CccccccCCCCCceecCCCCCCcHHHHHHHHH
Q 012855 35 QNLCVKCKANEPTPGAGEDGKHCLDCFRSNLF 66 (455)
Q Consensus 35 ~~~C~kCk~~~av~~~r~~~~~C~~CF~~~i~ 66 (455)
...|..|+...+++..=+.. +|+-||.+...
T Consensus 14 ~nrC~~~Gr~rgvirkf~l~-lcR~~FRe~A~ 44 (52)
T PRK05766 14 ARECQRCGRKQGLIRKYGLY-LCRQCFREVAP 44 (52)
T ss_pred CceeecCCCCceeHHhhCCc-ccHHHHHHHHH
Confidence 45799999987665332455 99999987743
No 139
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=52.23 E-value=8.6 Score=35.24 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=13.9
Q ss_pred cccCcccCCCCCcccC
Q 012855 363 ESFCSLCYSPLNQSDL 378 (455)
Q Consensus 363 ~~~C~lC~~~ld~~~~ 378 (455)
.+.|++||.|||+.+.
T Consensus 154 RP~CPlCg~PlDP~GH 169 (171)
T PF11290_consen 154 RPPCPLCGEPLDPEGH 169 (171)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 4689999999999875
No 140
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=51.14 E-value=25 Score=33.07 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=27.8
Q ss_pred CCCEEEEEecCCccHHH-HHHHHHHHHHHHhhccccccCCCCCceEEEEEE
Q 012855 81 PADNVLVAFSGGPSSRV-ALQFVHELQQRAQKNFDASKDRSLPVFGVGVVF 130 (455)
Q Consensus 81 ~g~kVLValSGG~dS~v-LL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~ 130 (455)
.|.+|+||++||..+.- ...++..+.+ .++++.++.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k--------------~G~~V~vv~ 40 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVD--------------EGAEVTPIV 40 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHh--------------CcCEEEEEE
Confidence 47799999999988887 5888887743 167777766
No 141
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=46.61 E-value=23 Score=30.50 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=25.7
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEE
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVF 130 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~ 130 (455)
||+|+++|+....-..+++..+++ .++++.++.
T Consensus 2 ~i~l~vtGs~~~~~~~~~l~~L~~--------------~g~~v~vv~ 34 (129)
T PF02441_consen 2 RILLGVTGSIAAYKAPDLLRRLKR--------------AGWEVRVVL 34 (129)
T ss_dssp EEEEEE-SSGGGGGHHHHHHHHHT--------------TTSEEEEEE
T ss_pred EEEEEEECHHHHHHHHHHHHHHhh--------------CCCEEEEEE
Confidence 899999999999888888888743 167777665
No 142
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=45.94 E-value=31 Score=31.98 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.3
Q ss_pred CEEEEEecCCccHHHHHHHHHHHH
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQ 106 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~ 106 (455)
.||+|++||+..+.-..+++..+.
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~ 25 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLT 25 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHH
Confidence 489999999999998889998874
No 143
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=45.35 E-value=24 Score=32.65 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=26.5
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEE
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVF 130 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~ 130 (455)
||+||+|||....-..+++..+.+ .+.++.|+.
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~--------------~g~~V~vv~ 33 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKE--------------AGVEVHLVI 33 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHH--------------CCCEEEEEE
Confidence 689999999999888999988743 156777766
No 144
>PRK05920 aromatic acid decarboxylase; Validated
Probab=44.90 E-value=33 Score=32.46 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHH
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQ 107 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~ 107 (455)
+.||+||++||..+.-.+.++..+.+
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~ 28 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLA 28 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 56899999999999888888888743
No 145
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=44.09 E-value=2e+02 Score=28.52 Aligned_cols=97 Identities=11% Similarity=0.157 Sum_probs=58.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
..||+|-+| +-+-.|.++|.+.+. +....++.+|-=||. .++.++++.
T Consensus 90 ~~ri~i~VS--K~~HCL~DLL~r~~~------------g~L~~eI~~VIsNH~---------------dl~~~v~~~--- 137 (287)
T COG0788 90 RKRIAILVS--KEDHCLGDLLYRWRI------------GELPAEIVAVISNHD---------------DLRPLVERF--- 137 (287)
T ss_pred CceEEEEEe--chHHHHHHHHHHHhc------------CCcCCceEEEEcCCH---------------HHHHHHHHc---
Confidence 346777776 788899999987532 122445555543332 256667776
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITA 238 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~n 238 (455)
++|||.+|+... +-++.- .-+.++..++|.+.|+|+--|.-|.-.+...
T Consensus 138 ~IPfhhip~~~~----------------------~k~e~E------~~~~~ll~~~~~DlvVLARYMqILS~d~~~~ 186 (287)
T COG0788 138 DIPFHHIPVTKE----------------------NKAEAE------ARLLELLEEYGADLVVLARYMQILSPDFVER 186 (287)
T ss_pred CCCeeeccCCCC----------------------cchHHH------HHHHHHHHHhCCCEEeehhhHhhCCHHHHHh
Confidence 899999997531 001111 1134566778899999887765554444433
No 146
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=43.88 E-value=1e+02 Score=29.95 Aligned_cols=61 Identities=13% Similarity=0.016 Sum_probs=38.2
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCC-CCCCCCchhHHHHHHHHHH
Q 012855 80 TPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETA-YYPVPSSEIDNAIQEIKLI 154 (455)
Q Consensus 80 ~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~-~~~~s~~e~~~~~~~v~~~ 154 (455)
..++.+.||||||..=.-++..|.+.... ....| +++++++||-. +...++ +.....+++.
T Consensus 30 ~~~~~~~i~lsgG~tP~~~y~~L~~~~~~-----------~~i~w~~v~if~~DEr~~Vp~~~~---~Sn~~~~~~~ 92 (253)
T PTZ00285 30 TSDRPFVLGLPTGSTPLPTYQELIRAYRE-----------GRVSFSNVVTFNMDEYVGLPRDHP---QSYHYFMKEN 92 (253)
T ss_pred hcCCCeEEEEcCCCCHHHHHHHHHHHHhh-----------cCCchhHeEEECCcEEecCCCCch---HHHHHHHHHH
Confidence 34568999999999988888877754221 11234 68899999964 333222 2344455543
No 147
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=43.41 E-value=3.3e+02 Score=26.68 Aligned_cols=90 Identities=19% Similarity=0.321 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCC
Q 012855 61 FRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPV 139 (455)
Q Consensus 61 F~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~ 139 (455)
+..|+..+--+++. .+.++-||||||. |-+.|.+..... + +....+ +.++.++||.. .+.
T Consensus 24 l~~~~~~~s~~~~~------~~g~F~i~lSGGS----Li~~L~~~l~~~---~-----~~~i~w~kW~if~~DER~-Vp~ 84 (252)
T KOG3147|consen 24 LAGYIAEKSEKALK------KRGRFTLALSGGS----LIQVLSKLLESP---Y-----QDDIDWSKWHIFFVDERV-VPL 84 (252)
T ss_pred HHHHHHHHHHHHHh------cCCeEEEEEcCCc----HHHHHHHHhccc---c-----cCCCCccceEEEEEeccc-cCC
Confidence 33444444444443 5678999999996 444444432210 0 001112 56789999985 344
Q ss_pred CCchhHHHHHHHHHHHHhhCCCCCcEEEEeccc
Q 012855 140 PSSEIDNAIQEIKLIVSNLSPPTKELHVIPIES 172 (455)
Q Consensus 140 s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~ 172 (455)
+.++.. .-...+.+..++ +.+...+.++++
T Consensus 85 ~~~dSN-yg~~~~~~l~~v--~~~~~~i~~id~ 114 (252)
T KOG3147|consen 85 DDPDSN-YGLAKRHFLSKV--PIPHYNIYPIDE 114 (252)
T ss_pred CCCccc-HHHHHHhhhhhC--CCCcCcEEECCh
Confidence 332221 223345556665 333445666654
No 148
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=43.30 E-value=52 Score=27.66 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.3
Q ss_pred CEEEEEecCCccHHHHHHHHHHH
Q 012855 83 DNVLVAFSGGPSSRVALQFVHEL 105 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l 105 (455)
.|||+.+++|.+|..|+.=+...
T Consensus 4 kkIllvC~~G~sTSll~~km~~~ 26 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQ 26 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 48999999999999999666554
No 149
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=42.39 E-value=34 Score=31.60 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=26.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEE
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVF 130 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~ 130 (455)
||+|++||+....-..+++..+++ .++++.+|.
T Consensus 2 ~I~lgvtGs~~a~~~~~ll~~L~~--------------~g~~V~vi~ 34 (177)
T TIGR02113 2 KILLAVTGSIAAYKAADLTSQLTK--------------LGYDVTVLM 34 (177)
T ss_pred EEEEEEcCHHHHHHHHHHHHHHHH--------------CCCEEEEEE
Confidence 799999999988888888887743 167777766
No 150
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=42.03 E-value=15 Score=33.70 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=13.9
Q ss_pred cccCcccCCCCCcccC
Q 012855 363 ESFCSLCYSPLNQSDL 378 (455)
Q Consensus 363 ~~~C~lC~~~ld~~~~ 378 (455)
.+.|++||.|+|+++.
T Consensus 156 RP~CPlCg~PldP~GH 171 (177)
T TIGR03847 156 RPPCPLCGRPIDPDGH 171 (177)
T ss_pred CCCCCCCCCCCCCCCc
Confidence 4679999999999876
No 151
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=41.42 E-value=1e+02 Score=25.93 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=41.8
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCC----------CCCCCCCchhHHHHHHHHH
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDET----------AYYPVPSSEIDNAIQEIKL 153 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~----------~~~~~s~~e~~~~~~~v~~ 153 (455)
+||+.+++|.+++.|..=+.+..+. ++ ....+.++-.++. .+.|+ ..-....+++
T Consensus 3 ~IlLvC~aGmSTSlLV~Km~~aA~~----------kg-~~~~I~A~s~~e~~~~~~~~DvvLlGPQ----v~y~~~~~~~ 67 (102)
T COG1440 3 KILLVCAAGMSTSLLVTKMKKAAES----------KG-KDVTIEAYSETELSEYIDNADVVLLGPQ----VRYMLKQLKE 67 (102)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHh----------CC-CceEEEEechhHHHHhhhcCCEEEEChH----HHHHHHHHHH
Confidence 7999999999999998877765432 11 1345555443321 01110 1112345666
Q ss_pred HHHhhCCCCCcEEEEeccc
Q 012855 154 IVSNLSPPTKELHVIPIES 172 (455)
Q Consensus 154 ~~~~l~~~~i~~~iv~l~~ 172 (455)
.+... |+|..+++-.+
T Consensus 68 ~~~~~---giPV~vI~~~d 83 (102)
T COG1440 68 AAEEK---GIPVEVIDMLD 83 (102)
T ss_pred Hhccc---CCCeEEeCHHH
Confidence 66665 78999887544
No 152
>PRK00032 Maf-like protein; Reviewed
Probab=41.34 E-value=1.1e+02 Score=28.60 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhccCCCCCCcccccccCC-----CCcceEecCccccHHHHHHHHHHcCCCcccccCCCCCcHHHHHHHH
Q 012855 229 SRIACHVITATVKGRGYSLPADIQYADAR-----WEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSF 303 (455)
Q Consensus 229 ddlAet~L~nl~~GrG~sl~~~~~~~~~~-----~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~~~Si~~l~~~f 303 (455)
.+.|..+|..+ .|+-..+-.-+...... ...+.++ |+.+++.||..|...- .+.. +-..+.|+.+...|
T Consensus 86 ~eeA~~~L~~l-sG~~h~v~T~v~l~~~~~~~~~~~~t~V~-F~~l~~~~I~~Yv~~~--ep~d--kAG~y~Iqg~g~~l 159 (190)
T PRK00032 86 AADAAAMLRAL-SGRTHQVMTAVALADSQRILSCLVVTDVT-FRTLSDEEIARYWASG--EPLD--KAGAYGIQGLGGCF 159 (190)
T ss_pred HHHHHHHHHHh-CCCCcEEEEEEEEEECCeEEEEEEEEEEE-ECcCCHHHHHHHHhcC--Cccc--eeeeEEeccChhhc
Confidence 35566666666 46644332222211111 1234444 6789999999999752 2221 12345678888888
Q ss_pred HHHHHHhCCChH
Q 012855 304 VKILQEENPSRE 315 (455)
Q Consensus 304 i~~Le~~~Pstv 315 (455)
|..++..|.+++
T Consensus 160 i~~I~G~~~nVv 171 (190)
T PRK00032 160 VRKINGSYHAVV 171 (190)
T ss_pred EeeeECCCCccc
Confidence 888887777664
No 153
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=41.18 E-value=20 Score=26.14 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=19.9
Q ss_pred cccccCCCCCcee-cC-CCCCCcHHHHHHH
Q 012855 37 LCVKCKANEPTPG-AG-EDGKHCLDCFRSN 64 (455)
Q Consensus 37 ~C~kCk~~~av~~-~r-~~~~~C~~CF~~~ 64 (455)
+|..|+.+-..+. +. .+.+.|.+||.+.
T Consensus 1 ~C~iCg~kigl~~~~k~~DG~iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLFKRFKIKDGYICKDCLKKL 30 (51)
T ss_pred CCCccccccccccceeccCccchHHHHHHh
Confidence 4889998766554 22 3446999999775
No 154
>PRK14368 Maf-like protein; Provisional
Probab=41.12 E-value=1.6e+02 Score=27.63 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcEEEcccc-------------hhHHHHHHHHHHhccCCCCCCcccccccCC----C
Q 012855 196 TGKEDLLLQLRMLSLQKFASENGYNRLLLGLC-------------TSRIACHVITATVKGRGYSLPADIQYADAR----W 258 (455)
Q Consensus 196 tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~-------------~ddlAet~L~nl~~GrG~sl~~~~~~~~~~----~ 258 (455)
.++.++...+=+.-...++.++.-..|+.+++ ..+.|..+|..+ .|+-..+-.-+...... +
T Consensus 42 ~~p~~~v~~lA~~KA~~v~~~~~~~~vI~aDTvV~~~g~ilgKP~~~~eA~~~L~~l-sG~~h~v~Tgv~l~~~~~~~~~ 120 (193)
T PRK14368 42 EEPVDHVLRLAREKARAAAALAEGRFFIGADTIVVCDGEIMGKPKDEADAVRMLKKL-SGVPHEVITGFAVYDRERDGCV 120 (193)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCcEEEECCEEecCCCCHHHHHHHHHHh-CCCCcEEEEEEEEEECCCCEEE
Confidence 34555555553333335566554334444443 345566677666 46644332222221111 1
Q ss_pred ---CcceEecCccccHHHHHHHHHHcCCCcccccCCCCCcHHHHHHHHHHHHHHhCCChH
Q 012855 259 ---EIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQEENPSRE 315 (455)
Q Consensus 259 ---~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~~~Si~~l~~~fi~~Le~~~Pstv 315 (455)
..+.++ |+.++++||..|..... +.. .-..+.|+.+...||..++..|.+++
T Consensus 121 ~~~~~t~V~-f~~l~~~~I~~Yl~~~e--p~d--kAGay~Iqg~g~~li~~I~Gdy~nV~ 175 (193)
T PRK14368 121 TKAVRTKVF-FKPLRDEEIRDYIATGC--PMD--KAGAYAIQGGAAHMVRKIDGSYTNVV 175 (193)
T ss_pred EEEEEEEEE-ECCCCHHHHHHHHhcCC--ccc--EeeeehhcCChhhcEeeeECCCCccc
Confidence 122222 47889999999996632 221 12345688888889999988877764
No 155
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=40.92 E-value=28 Score=30.87 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=27.7
Q ss_pred ccccccCCCCCceecCCCCCCcHHHHHH--HHHHHHHHHHhhc
Q 012855 36 NLCVKCKANEPTPGAGEDGKHCLDCFRS--NLFGKFRLAVASN 76 (455)
Q Consensus 36 ~~C~kCk~~~av~~~r~~~~~C~~CF~~--~i~~Kfr~~i~~~ 76 (455)
..|.+|+. ++...+.. +|..|+.+ -...|++..|.++
T Consensus 4 ~nC~~Cgk---lF~~~~~~-iCp~C~~~~e~~f~kV~~yLr~~ 42 (137)
T TIGR03826 4 ANCPKCGR---LFVKTGRD-VCPSCYEEEEREFEKVYKFLRKH 42 (137)
T ss_pred ccccccch---hhhhcCCc-cCHHHhHHHHHHHHHHHHHHHHC
Confidence 46999997 23324566 99999984 4688899988865
No 156
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=38.59 E-value=2.6e+02 Score=31.42 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCC
Q 012855 61 FRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETA 135 (455)
Q Consensus 61 F~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~ 135 (455)
+...+-+.+...|.+ .+..+..+.||||||.+=.-++..|..+..+ ....| +++++.+||-.
T Consensus 39 ~a~~vA~~I~~~I~~--~~~~~~~~~laLsGGsTP~~~Y~~L~~~~~~-----------~~l~w~~V~~F~~DEr~ 101 (652)
T PRK02122 39 ASRAVAQEIATLIRE--RQAEGKPCVLGLATGSSPIGVYAELIRMHRE-----------EGLSFKNVITFNLDEYY 101 (652)
T ss_pred HHHHHHHHHHHHHHH--HHHhCCCEEEEEcCCcCHHHHHHHHHhhhhc-----------cCCCchheEEEeCeecc
Confidence 334444555444433 2344678999999999988888888765221 11244 68889999864
No 157
>PRK14367 Maf-like protein; Provisional
Probab=37.79 E-value=1.3e+02 Score=28.45 Aligned_cols=81 Identities=9% Similarity=0.117 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhccCCCCCCcccccccCC-----CCcceEecCccccHHHHHHHHHHcCCCcccccCCCCCcHHHHHHHH
Q 012855 229 SRIACHVITATVKGRGYSLPADIQYADAR-----WEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSF 303 (455)
Q Consensus 229 ddlAet~L~nl~~GrG~sl~~~~~~~~~~-----~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~~~Si~~l~~~f 303 (455)
.+.|..+|..+ .|+-..+-.-+...... ...+.++ |+.+++.||..|...-. +.. .-..+.|+.+...|
T Consensus 92 ~eeA~~~L~~l-sG~~h~V~Tgv~l~~~~~~~~~~~~T~V~-f~~ls~~~I~~Yv~~~e--~~d--kAGay~Iqg~g~~~ 165 (202)
T PRK14367 92 QAEAIEFLNRL-SGKQHTVLTAVCIHYRGKTSSRVQTNRVV-FKPLSSEEISAYVQSGE--PMD--KAGAYAVQGIGGIF 165 (202)
T ss_pred HHHHHHHHHHh-CCCCeEEEEEEEEEECCEEEEEEEEEEEE-ECCCCHHHHHHHHhcCC--ccc--eeeeEeecCChhhc
Confidence 35566677766 46543332212111110 1344455 68899999999996632 221 12345688888889
Q ss_pred HHHHHHhCCChH
Q 012855 304 VKILQEENPSRE 315 (455)
Q Consensus 304 i~~Le~~~Pstv 315 (455)
|..++..|.+++
T Consensus 166 v~~I~G~y~nVv 177 (202)
T PRK14367 166 IQSIEGSFSGIM 177 (202)
T ss_pred EeeeECCCcccc
Confidence 999988887774
No 158
>PRK07667 uridine kinase; Provisional
Probab=37.05 E-value=49 Score=30.61 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=28.0
Q ss_pred CCEEEEEecCCccH--HHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 82 ADNVLVAFSGGPSS--RVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 82 g~kVLValSGG~dS--~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
+.+++||++|++-| +.+.+.|.+.... .+..+.++|.|.
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~-------------~~~~~~~i~~Dd 55 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQ-------------EGIPFHIFHIDD 55 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-------------CCCcEEEEEcCc
Confidence 56799999998877 7777877764331 145677888874
No 159
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=36.63 E-value=8.2 Score=28.22 Aligned_cols=14 Identities=36% Similarity=0.926 Sum_probs=7.9
Q ss_pred ccCcccCCCCCccc
Q 012855 364 SFCSLCYSPLNQSD 377 (455)
Q Consensus 364 ~~C~lC~~~ld~~~ 377 (455)
..||+|+.|+|...
T Consensus 21 ~~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 21 GCCPLCGRPLDEEH 34 (54)
T ss_dssp EE-TTT--EE-HHH
T ss_pred CcCCCCCCCCCHHH
Confidence 38999999998754
No 160
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=36.59 E-value=50 Score=30.78 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=20.9
Q ss_pred CEEEEEecCCccHHHHHHHHHHHH
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQ 106 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~ 106 (455)
.||+||+|||..+.-..+++..+.
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~ 25 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLR 25 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHH
Confidence 379999999999988888888874
No 161
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=35.36 E-value=78 Score=25.88 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=25.7
Q ss_pred EEEEEecCCccHHHH-HHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 84 NVLVAFSGGPSSRVA-LQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 84 kVLValSGG~dS~vL-L~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
||||++..|..|+.| ..-+++...+ .++++.+.+++.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~-------------~gi~~~v~~~~~ 41 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQS-------------HNIPVELIQCRV 41 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHH-------------CCCeEEEEEecH
Confidence 799999999976666 5667765442 156766766553
No 162
>PF00253 Ribosomal_S14: Ribosomal protein S14p/S29e; InterPro: IPR001209 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. S14 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S14 is known to be required for the assembly of 30S particles and may also be responsible for determining the conformation of 16S rRNA at the A site. It belongs to a family of ribosomal proteins [, ] that include, bacterial, algal and plant chloroplast, yeast mitochondrial, cyanelle and archael, Methanococcus vannielii S14's, as well as yeast mitochondrial MRP2, yeast YS29A/B and mammalian S29.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_N 2XZM_N 1S1H_N 3IZ6_N 2YKR_N 2QBB_N 3I1Z_N 3OAQ_N 3R8O_N 2Z4K_N ....
Probab=34.29 E-value=86 Score=23.07 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=22.6
Q ss_pred cCccccccCCCCCceecCCCCCCcHHHHHHHHH
Q 012855 34 EQNLCVKCKANEPTPGAGEDGKHCLDCFRSNLF 66 (455)
Q Consensus 34 ~~~~C~kCk~~~av~~~r~~~~~C~~CF~~~i~ 66 (455)
....|..|+...+++ +.-. +|+-||.++..
T Consensus 15 ~~nrC~~tGR~rgv~--r~f~-lsR~~fR~~a~ 44 (55)
T PF00253_consen 15 IKNRCVITGRSRGVI--RKFG-LSRICFRELAS 44 (55)
T ss_dssp SCSSBSSSCSSSSBE--TTTS-SBHHHHHHHHH
T ss_pred CCeecccCCCceeee--cccc-ccHHHHHHHHH
Confidence 456799999987765 4444 89999988754
No 163
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=32.84 E-value=52 Score=36.88 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=40.6
Q ss_pred cccCcccCCCCCcccCCCcccCCCCCchhhhhcCCCcccccccccCCCCccchhcccCC---HHHHHHHHhhhhcchHHH
Q 012855 363 ESFCSLCYSPLNQSDLTSLSSHDNCKNSDIFVAACCSSCRFQIFPKDPSSMEKFYSLLP---EPLVARAKHVRNGDSSLL 439 (455)
Q Consensus 363 ~~~C~lC~~~ld~~~~~~~~~~~~~~~~~~~~~~~Cy~C~~~~~~~~~~~~~~~~~~lp---~~~~~~~~~~~~~~~~~m 439 (455)
...|+.|+.+ |..+. ..........+.++....|.-|...+..+ .-++.+-.|+ +.+++.+.... .=...|
T Consensus 139 ~g~cp~C~~~-d~~g~-~ce~cg~~~~~~~l~~~~~~~~g~~~e~~---~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~ 212 (673)
T PRK00133 139 KGTCPKCGAE-DQYGD-NCEVCGATYSPTELINPKSAISGATPVLK---ESEHFFFKLPRFEEFLKEWITRSG-ELQPNV 212 (673)
T ss_pred ecccCCCCCc-ccCCc-hhhhccccCChHhhcCCccccCCCcceEE---ecceEEEEHHHHHHHHHHHHhcCC-CCCHHH
Confidence 3579999876 33332 12322222334446667788887655332 1223332333 33344433221 236788
Q ss_pred HHHhhhhc
Q 012855 440 REQIQDFL 447 (455)
Q Consensus 440 ~~~i~~~l 447 (455)
++++.+||
T Consensus 213 ~~~~~~~l 220 (673)
T PRK00133 213 ANKMKEWL 220 (673)
T ss_pred HHHHHHHH
Confidence 88888888
No 164
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=32.62 E-value=29 Score=28.40 Aligned_cols=41 Identities=17% Similarity=0.413 Sum_probs=25.8
Q ss_pred ccccCcccCCCCCcccCCCcc-----c-CCCCCchh-hhhcCCCcccccc
Q 012855 362 SESFCSLCYSPLNQSDLTSLS-----S-HDNCKNSD-IFVAACCSSCRFQ 404 (455)
Q Consensus 362 ~~~~C~lC~~~ld~~~~~~~~-----~-~~~~~~~~-~~~~~~Cy~C~~~ 404 (455)
.-..|++||.||. +..+.. . .++++.++ .+.-.+|..|.-.
T Consensus 33 ~~p~C~~cg~pL~--Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~~~ 80 (93)
T COG2174 33 TIPKCAICGRPLG--GIPRGRPREFRRLSKTKKRPERPYGGYLCANCVRE 80 (93)
T ss_pred CCCcccccCCccC--CccCCCcHHHHhccccccCcCCCcCceecHHHHHH
Confidence 3578999999994 443331 1 23344443 3777899999743
No 165
>PRK00148 Maf-like protein; Reviewed
Probab=30.39 E-value=2.2e+02 Score=26.72 Aligned_cols=113 Identities=15% Similarity=0.071 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCcEEEcccc-------------hhHHHHHHHHHHhccCCCCCCcccccccCC----C-
Q 012855 197 GKEDLLLQLRMLSLQKFASENGYNRLLLGLC-------------TSRIACHVITATVKGRGYSLPADIQYADAR----W- 258 (455)
Q Consensus 197 sred~~~~lRr~lL~~~A~~~g~~~l~lGh~-------------~ddlAet~L~nl~~GrG~sl~~~~~~~~~~----~- 258 (455)
++.+++..+=+.-...++.++.-..|+.+++ ..+.|..+|..+ .|+-..+-.-+...... +
T Consensus 39 ~p~~~v~~lA~~KA~~v~~~~~~~~vI~aDTvV~~~g~Il~KP~~~eeA~~~L~~l-sG~~h~v~T~v~l~~~~~~~~~~ 117 (194)
T PRK00148 39 SPSELVQALARAKAEAVAENAPDAVVLGCDSMLLIDGRLLGKPHTPEEAIERWQQM-SGRTGELYTGHALIDLDQGKTVT 117 (194)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEeCcEEEECCEEecCCCCHHHHHHHHHHh-CCCCcEEEEEEEEEECCCCeEEE
Confidence 4555555543333345555544334444444 345667777776 46654432222211111 1
Q ss_pred --CcceEecCccccHHHHHHHHHHcCCCcccccCCCCCcHHHHHHHHHHHHHHhCCChH
Q 012855 259 --EIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQEENPSRE 315 (455)
Q Consensus 259 --~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~~~Si~~l~~~fi~~Le~~~Pstv 315 (455)
..+.++ |+.+++++|..|..... +.. +.....|+.+...||..++..|.+++
T Consensus 118 ~~~~T~V~-F~~l~~~~I~~Yl~~~e--~~d--kAGay~Iqg~g~~~i~~I~G~~~nV~ 171 (194)
T PRK00148 118 FYERTEVH-FAELSDEEIEAYVATGE--PLD--CAGAFTLQGLGGWFVDKIEGDPSNVI 171 (194)
T ss_pred EEEEEEEE-ECCCCHHHHHHHHhhCC--ccc--eeeEEEeccChhhcEEeeECCccccc
Confidence 112221 36789999999997632 221 22345678888888888888777663
No 166
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=30.15 E-value=69 Score=33.48 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHH
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQ 106 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~ 106 (455)
.|.+|+||++|+..+.-.++++..+.
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~ 27 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELV 27 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHH
Confidence 36799999999999988888888874
No 167
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=30.11 E-value=36 Score=30.95 Aligned_cols=31 Identities=26% Similarity=0.782 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCcccccccccccccccccccccCccccccCCCC
Q 012855 2 ACNSATGCQSGCYKNEFERDLKPATETISDSNEQNLCVKCKANE 45 (455)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~kCk~~~ 45 (455)
+|-+.+=|+||||.-- ..+.+..|++|+...
T Consensus 21 SCpg~slCgPGcyr~~-------------~edgs~sCv~c~n~t 51 (180)
T PF14946_consen 21 SCPGTSLCGPGCYRHW-------------NEDGSVSCVQCGNGT 51 (180)
T ss_pred cCCCCCccCCcceeee-------------cCCCCeEEEEcCCCc
Confidence 5887888999998742 011345599999765
No 168
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=28.23 E-value=1.1e+02 Score=24.45 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCCCCEEEEEecCCccHHHHHHHHHHH
Q 012855 79 ITPADNVLVAFSGGPSSRVALQFVHEL 105 (455)
Q Consensus 79 i~~g~kVLValSGG~dS~vLL~lL~~l 105 (455)
+.++..|+|.+.+|..|..+..+|..+
T Consensus 58 ~~~~~~ivv~C~~G~rs~~aa~~L~~~ 84 (100)
T cd01523 58 LPDDQEVTVICAKEGSSQFVAELLAER 84 (100)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHc
Confidence 456678999999998998888877643
No 169
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=28.10 E-value=4e+02 Score=25.74 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=38.7
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCCchhHHHHHHHHHHH
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPSSEIDNAIQEIKLIV 155 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~ 155 (455)
..++.||||||..=..|...|.+..+ +...| ++++..+||-.. +.+. -+.....+++..
T Consensus 31 ~~~~~l~LsgGsTP~~~ye~L~~~~~------------~~~~w~~v~~f~~DEr~v-p~~~--~~Sn~~~~~~~l 90 (238)
T COG0363 31 RGRAVLALSGGSTPLALYEALVKLPQ------------GQLDWSKVTIFNLDERVV-PPDD--PESNYGLMRRNL 90 (238)
T ss_pred cCcEEEEECCCCCHHHHHHHHHhhhc------------cCCCchheEEEecccccc-CCCC--chhHHHHHHHHH
Confidence 45899999999999998888876421 11244 688999999754 3322 134445555443
No 170
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=27.94 E-value=1.1e+02 Score=28.87 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=31.6
Q ss_pred cCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 77 ALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 77 ~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
.+|.++| |++++||+=.+.-++.++...++ .+..+.+++-++
T Consensus 82 g~i~~~D-vviaiS~SGeT~el~~~~~~aK~--------------~g~~liaiT~~~ 123 (202)
T COG0794 82 GMITPGD-VVIAISGSGETKELLNLAPKAKR--------------LGAKLIAITSNP 123 (202)
T ss_pred cCCCCCC-EEEEEeCCCcHHHHHHHHHHHHH--------------cCCcEEEEeCCC
Confidence 3677766 99999999999999999887643 155677777544
No 171
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=26.87 E-value=56 Score=24.82 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=21.0
Q ss_pred CccccccCCCCCceecCCCCCCcHHHHHHHH
Q 012855 35 QNLCVKCKANEPTPGAGEDGKHCLDCFRSNL 65 (455)
Q Consensus 35 ~~~C~kCk~~~av~~~r~~~~~C~~CF~~~i 65 (455)
...|..|+...+++ |.-. +|+-||.++.
T Consensus 21 ~nRC~~tGR~rgvi--r~fg-l~R~~FRe~A 48 (61)
T PRK08061 21 YTRCERCGRPHSVY--RKFG-LCRICFRELA 48 (61)
T ss_pred ceeeecCCCCccee--ccCC-ccHHHHHHHH
Confidence 45799999987765 3334 9999997764
No 172
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=26.85 E-value=51 Score=35.32 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.1
Q ss_pred CEEEEEecCCccHHHHHHHHHHH
Q 012855 83 DNVLVAFSGGPSSRVALQFVHEL 105 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l 105 (455)
.-.++++|||.||.+.+-+++-+
T Consensus 350 aGfflPLSGG~DSsatA~iV~sM 372 (706)
T KOG2303|consen 350 AGFFLPLSGGVDSSATAAIVYSM 372 (706)
T ss_pred CceEEecCCCccchHHHHHHHHH
Confidence 35999999999999888777654
No 173
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=26.82 E-value=36 Score=24.50 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=17.3
Q ss_pred cccccCCCCC---ceecCCCCCCcHHHHHHHH
Q 012855 37 LCVKCKANEP---TPGAGEDGKHCLDCFRSNL 65 (455)
Q Consensus 37 ~C~kCk~~~a---v~~~r~~~~~C~~CF~~~i 65 (455)
.|..|+..-. .+...+.. ||++||.+.|
T Consensus 28 ~C~~C~~~l~~~~~~~~~~~~-~C~~c~~~~f 58 (58)
T PF00412_consen 28 KCSKCGKPLNDGDFYEKDGKP-YCKDCYQKRF 58 (58)
T ss_dssp BETTTTCBTTTSSEEEETTEE-EEHHHHHHHT
T ss_pred ccCCCCCccCCCeeEeECCEE-ECHHHHhhhC
Confidence 5777764322 13333555 9999998753
No 174
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=26.24 E-value=85 Score=29.31 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=25.9
Q ss_pred EEEEEecCCccHHHHH-HHHHHHHHHHhhccccccCCCCCceEEEEEEE
Q 012855 84 NVLVAFSGGPSSRVAL-QFVHELQQRAQKNFDASKDRSLPVFGVGVVFV 131 (455)
Q Consensus 84 kVLValSGG~dS~vLL-~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~V 131 (455)
||+||++|+..+.-.. .++..+.+ .++++.++.=
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~--------------~g~~V~vI~S 36 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVD--------------EGAEVTPIVS 36 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHh--------------CcCEEEEEEc
Confidence 7999999998888875 88887743 1677777663
No 175
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=26.06 E-value=62 Score=29.78 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCcEEEcccchhHHHHHH
Q 012855 207 MLSLQKFASENGYNRLLLGLCTSRIACHV 235 (455)
Q Consensus 207 r~lL~~~A~~~g~~~l~lGh~~ddlAet~ 235 (455)
...+...|++.+++.|++||+-.-.+++.
T Consensus 98 ~~~l~~la~~~~~Dvli~GHTH~p~~~~~ 126 (172)
T COG0622 98 LSLLEYLAKELGADVLIFGHTHKPVAEKV 126 (172)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcccEEEE
Confidence 45577899999999999999988777653
No 176
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=26.02 E-value=88 Score=32.77 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHH
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQ 106 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~ 106 (455)
.+.+|+|+++||....-..+++..+.
T Consensus 5 ~~k~IllgvTGsiaa~k~~~lv~~L~ 30 (399)
T PRK05579 5 AGKRIVLGVSGGIAAYKALELVRRLR 30 (399)
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHHH
Confidence 46789999999998888888888774
No 177
>PRK04425 Maf-like protein; Reviewed
Probab=25.67 E-value=2.1e+02 Score=26.87 Aligned_cols=114 Identities=10% Similarity=0.030 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcEEEcccc-------------hhHHHHHHHHHHhccCCCCCCcccccccCC-----
Q 012855 196 TGKEDLLLQLRMLSLQKFASENGYNRLLLGLC-------------TSRIACHVITATVKGRGYSLPADIQYADAR----- 257 (455)
Q Consensus 196 tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~-------------~ddlAet~L~nl~~GrG~sl~~~~~~~~~~----- 257 (455)
.++.+++..+=..-...++..+.-..|+.+++ .-+.|...|..+ .|+-..+-.-+......
T Consensus 42 ~~p~~~~~~lA~~KA~~v~~~~~~~lvI~aDTvV~~~g~ilgKP~~~eeA~~~L~~l-sg~~h~v~T~v~l~~~~~~~~~ 120 (196)
T PRK04425 42 ESAPQTALRLAEGKARSLTGRFPEALIVGADQVAWCDGRQWGKPMNLANAQKMLMHL-SGREIEFYSALVLLNTVTGRMQ 120 (196)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCCCEEEEeCeEEEECCEEecCCCCHHHHHHHHHHh-CCCcEEEEEEEEEEECCCCeEE
Confidence 34455554443333345555554334444444 235566677665 46644332222221101
Q ss_pred --CCcceEecCccccHHHHHHHHHHcCCCcccccCCCCCcHHHHHHHHHHHHHH-hCCCh
Q 012855 258 --WEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQE-ENPSR 314 (455)
Q Consensus 258 --~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~~~Si~~l~~~fi~~Le~-~~Pst 314 (455)
...+.++ |+.++++||..|... +-.+.. .-....|+.+...||..++. .|.++
T Consensus 121 ~~~~~t~V~-f~~ls~~~I~~Yv~~-~~~~~d--kAGay~iqg~g~~li~~I~G~~~~nV 176 (196)
T PRK04425 121 RHIDKTVVV-MRQLDELHILRYLER-EPDAVY--CSCAAKSEGLGALLIERIESTDPNAL 176 (196)
T ss_pred EEEEEEEEE-ECCCCHHHHHHHHhC-CCCccc--ceeEEEeccChhhEEEEEEeCCCCcC
Confidence 1122222 477899999999975 312221 12344677777788888876 45544
No 178
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=25.50 E-value=3.5e+02 Score=25.86 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=29.9
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDET 134 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~ 134 (455)
..+.||+|||..=..+...|....... ...| +++++++||-
T Consensus 28 ~~~~l~lsgGstP~~~y~~L~~~~~~~-----------~l~w~~v~~f~~DE~ 69 (232)
T PRK09762 28 PDAVICLATGATPLLTYHYLVEKIHQQ-----------QVDVSQLTFVKLDEW 69 (232)
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhhc-----------CCCHHHeEEEcCcEE
Confidence 478999999999999988887542211 1234 6889999984
No 179
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.27 E-value=93 Score=33.43 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=28.6
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEE
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVF 130 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~ 130 (455)
+.+|+|+++||....-.++++..+.+ .++++.||.
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k--------------~G~~V~Vvm 104 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKE--------------RGAHVRCVL 104 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHh--------------CcCEEEEEE
Confidence 57899999999999988899888743 267777776
No 180
>PRK06696 uridine kinase; Validated
Probab=24.03 E-value=1.2e+02 Score=28.59 Aligned_cols=26 Identities=19% Similarity=0.037 Sum_probs=20.2
Q ss_pred CCCEEEEEecCCccH--HHHHHHHHHHH
Q 012855 81 PADNVLVAFSGGPSS--RVALQFVHELQ 106 (455)
Q Consensus 81 ~g~kVLValSGG~dS--~vLL~lL~~l~ 106 (455)
.+..++||+||+.-| +.+.+.|.+..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999998877 77778777643
No 181
>PF01439 Metallothio_2: Metallothionein; InterPro: IPR000347 Members of this family are metallothioneins. These proteins are cysteine rich proteins that bind to heavy metals. Members of this family appear to be closest to Class II metallothioneins.; GO: 0046872 metal ion binding
Probab=23.15 E-value=51 Score=26.04 Aligned_cols=14 Identities=50% Similarity=1.241 Sum_probs=10.3
Q ss_pred CC--CCCCCCCCCCCc
Q 012855 1 MA--CNSATGCQSGCY 14 (455)
Q Consensus 1 ~~--~~~~~~~~~~~~ 14 (455)
|+ |++.=||+++|.
T Consensus 1 MsC~CggnCgCGs~C~ 16 (74)
T PF01439_consen 1 MSCGCGGNCGCGSGCK 16 (74)
T ss_pred CCCcCCCcCCCCCCCC
Confidence 66 466788999864
No 182
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=23.12 E-value=1.4e+02 Score=25.44 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=21.5
Q ss_pred CCCCCCEEEEEe-cCCccHHHHHHHHHHH
Q 012855 78 LITPADNVLVAF-SGGPSSRVALQFVHEL 105 (455)
Q Consensus 78 li~~g~kVLVal-SGG~dS~vLL~lL~~l 105 (455)
-+.+.++|+|.. +||.-|..+.++|..+
T Consensus 82 ~i~~~~~vvvyC~~~G~rs~~a~~~L~~~ 110 (128)
T cd01520 82 RLERDPKLLIYCARGGMRSQSLAWLLESL 110 (128)
T ss_pred ccCCCCeEEEEeCCCCccHHHHHHHHHHc
Confidence 356677888888 5898898888888654
No 183
>PRK14364 Maf-like protein; Provisional
Probab=22.99 E-value=2.6e+02 Score=25.91 Aligned_cols=138 Identities=12% Similarity=0.080 Sum_probs=72.6
Q ss_pred HHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccc-----
Q 012855 153 LIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLC----- 227 (455)
Q Consensus 153 ~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~----- 227 (455)
++.+++ |++|.++|-+ ++.. .....++.+++..+=+.-...+++++.-..|+.+++
T Consensus 10 elL~~~---g~~f~v~~~~--~dE~--------------~~~~~~p~~~~~~lA~~KA~~v~~~~~~~~vI~aDTvV~~~ 70 (181)
T PRK14364 10 ELLQQL---GLNFEIYSPD--IDES--------------VHEGELVHQYVERLAREKAQAVLNIFPDSVIIAADTSLGLD 70 (181)
T ss_pred HHHHHC---CCCeEEECCC--CCCC--------------CCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCeEEEEC
Confidence 344555 7889888743 2211 111234555555553333445666554333433343
Q ss_pred --------hhHHHHHHHHHHhccCCCCCCcccccccCC-----CCcceEecCccccHHHHHHHHHHcCCCcccccCCCCC
Q 012855 228 --------TSRIACHVITATVKGRGYSLPADIQYADAR-----WEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHS 294 (455)
Q Consensus 228 --------~ddlAet~L~nl~~GrG~sl~~~~~~~~~~-----~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~~~ 294 (455)
..+.|..+|..+ .|+-..+-.-+...... ...+.++ |+.+++.||..|...- .+.. .-..+
T Consensus 71 g~ilgKP~~~eeA~~~L~~l-sG~~h~V~Tgv~l~~~~~~~~~~~~t~V~-f~~ls~~~I~~Yv~~~--e~~d--kAG~y 144 (181)
T PRK14364 71 GQIIGKPDSKQHAFDIWKQL-SGRWHDVFSGICIATQQQILSQVVQTQVE-FASLTTQDMEDYWATG--EPVG--KAGAY 144 (181)
T ss_pred CEEecCCCCHHHHHHHHHHh-CCCCeEEEEEEEEEECCEEEEEEEEEEEE-ECCCCHHHHHHHHhcC--CCcC--cccCE
Confidence 235566666666 46644332222211111 1112222 4788999999999663 2221 12345
Q ss_pred cHHHHHHHHHHHHHHhCCChH
Q 012855 295 GINGLVSSFVKILQEENPSRE 315 (455)
Q Consensus 295 Si~~l~~~fi~~Le~~~Pstv 315 (455)
.|+.+...||..++..|.+++
T Consensus 145 ~Iqg~g~~li~~I~Gdy~nVv 165 (181)
T PRK14364 145 AIQGIASQYIPKIQGSYSNVV 165 (181)
T ss_pred EeecCceeeEEEeEcCCccee
Confidence 677778888888888887764
No 184
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=22.76 E-value=1.7e+02 Score=25.27 Aligned_cols=43 Identities=7% Similarity=0.138 Sum_probs=34.3
Q ss_pred CccccHHHHHHHHHHcCCCcccccCCCCCcHHHHHHHHHHHHH
Q 012855 266 LRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQ 308 (455)
Q Consensus 266 Lrdl~~kEI~~Y~~~~~L~~~~~~~~~~~Si~~l~~~fi~~Le 308 (455)
-+.++.+|+..+++.++.++++.....+..+.++....+..++
T Consensus 119 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 119 EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566789999999999999988665566778888888887764
No 185
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=22.56 E-value=1.3e+02 Score=28.62 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=42.2
Q ss_pred EEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHH
Q 012855 125 GVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQ 204 (455)
Q Consensus 125 ~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~ 204 (455)
++.||-||++-+.+ +..++.++.+... |.++.+.-|+--|........-.|-.+-+++...|++|..|..
T Consensus 104 ~vdVigIDEaQFf~-------dl~efc~evAd~~---Gk~VivagLdgdF~Rk~Fg~il~Lvplad~v~kLtavC~~Cg~ 173 (234)
T KOG3125|consen 104 DVDVIGIDEAQFFG-------DLYEFCREVADVH---GKTVIVAGLDGDFKRKPFGAILDLVPLADSVTKLTAVCEECGA 173 (234)
T ss_pred cceEEEecHHHHhH-------HHHHHHHHHHhcc---CCEEEEEecCCchhhCcchhhhhhHhhhhhhhhhhhhhhhhcc
Confidence 58899999974332 3456666666543 6777776666444333222222344555666667888888764
No 186
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=22.07 E-value=53 Score=24.77 Aligned_cols=14 Identities=43% Similarity=0.956 Sum_probs=11.4
Q ss_pred ccccCcccCCCCCc
Q 012855 362 SESFCSLCYSPLNQ 375 (455)
Q Consensus 362 ~~~~C~lC~~~ld~ 375 (455)
..+.|+||++++-.
T Consensus 38 ~~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 38 EEPVCPLCKSPMVS 51 (59)
T ss_pred CCccCCCcCCcccc
Confidence 35789999999854
No 187
>PHA02565 49 recombination endonuclease VII; Provisional
Probab=21.80 E-value=66 Score=29.10 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=43.0
Q ss_pred cccCcccCCCCCcccCC-Cccc-C-CCCCchhhhhcCCCccccccccc-C------CCCccc-h---h------------
Q 012855 363 ESFCSLCYSPLNQSDLT-SLSS-H-DNCKNSDIFVAACCSSCRFQIFP-K------DPSSME-K---F------------ 416 (455)
Q Consensus 363 ~~~C~lC~~~ld~~~~~-~~~~-~-~~~~~~~~~~~~~Cy~C~~~~~~-~------~~~~~~-~---~------------ 416 (455)
...|++|+.|++..... -... | ......-.+.-.||.+|+..+=- + ...+++ + +
T Consensus 20 ~G~CaiC~~~l~~~~~~~~vDHDH~l~g~~TG~VRGLLC~~CN~~lG~~~~~~~r~g~~~~~~d~i~~L~~l~~YL~~~~ 99 (157)
T PHA02565 20 NGICPLCKRELDGDVSKNHLDHDHELNGPNAGRVRGLLCNLCNALEGQMKHKFNRSGLKGRGVDYIEWLENLLVYLKSDY 99 (157)
T ss_pred CCcCCCCCCccCCCccccccCCCCCCCCcccccccccCchhhhhhhhhhhhhhhhhccccccccHHHHHHHHHHHHcCCC
Confidence 57899999998753221 0111 1 11111122677899999963300 0 001111 0 0
Q ss_pred --cccCCHHHHHHHHhhhhcchHHHHHHhhh
Q 012855 417 --YSLLPEPLVARAKHVRNGDSSLLREQIQD 445 (455)
Q Consensus 417 --~~~lp~~~~~~~~~~~~~~~~~m~~~i~~ 445 (455)
...=|.|..++.++-....++.|..+.+.
T Consensus 100 t~n~ihp~~~~d~~K~~ar~~~~~m~a~~~~ 130 (157)
T PHA02565 100 SDNNIHPQFVPDKVKRFSRLTKEEMIAEMDS 130 (157)
T ss_pred CCCCCCcccCCHHHHHHHHcCHHHHHHHHHH
Confidence 01236666666554222788889888776
No 188
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.51 E-value=6.7e+02 Score=25.64 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=7.0
Q ss_pred CCEEEEEecCCcc
Q 012855 82 ADNVLVAFSGGPS 94 (455)
Q Consensus 82 g~kVLValSGG~d 94 (455)
.+++=.=+|||.=
T Consensus 135 ~~~yP~qLSGGQK 147 (339)
T COG1135 135 ADRYPAQLSGGQK 147 (339)
T ss_pred hccCchhcCcchh
Confidence 3445555666643
No 189
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.98 E-value=1e+02 Score=35.80 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=38.6
Q ss_pred ecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEE-eCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCcEEE
Q 012855 89 FSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFV-DETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHV 167 (455)
Q Consensus 89 lSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~V-D~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~~i 167 (455)
||||.-|+|.|.++..+. .|++..+|| |+ +... . +. ...+-|-.+.+..+ ++-.|.|
T Consensus 1083 LSGGQRSLVALsLIlamL----------------~fkPAPlYILDE--VDAA-L-DL-SHTQNIG~mIkthF-~~sQFIV 1140 (1174)
T KOG0933|consen 1083 LSGGQRSLVALSLILAML----------------KFKPAPLYILDE--VDAA-L-DL-SHTQNIGRMIKTHF-THSQFIV 1140 (1174)
T ss_pred hcCchHHHHHHHHHHHHH----------------cCCCCceeehhh--hHHh-h-cc-hhhhhHHHHHHhhC-CCCeEEE
Confidence 899999999999998874 355556676 32 1100 0 00 01233445555443 5788999
Q ss_pred Eeccc
Q 012855 168 IPIES 172 (455)
Q Consensus 168 v~l~~ 172 (455)
|+|.+
T Consensus 1141 VSLKe 1145 (1174)
T KOG0933|consen 1141 VSLKE 1145 (1174)
T ss_pred EEchh
Confidence 99986
No 190
>PF12251 zf-SNAP50_C: snRNA-activating protein of 50kDa MW C terminal; InterPro: IPR022042 This domain family is found in eukaryotes, and is typically between 196 and 207 amino acids in length. There is a conserved CEH sequence motif. SNAP50 is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.
Probab=20.64 E-value=74 Score=29.89 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=22.6
Q ss_pred cCccccccCCCCCceecC-------CCCCCcHHHHHHH
Q 012855 34 EQNLCVKCKANEPTPGAG-------EDGKHCLDCFRSN 64 (455)
Q Consensus 34 ~~~~C~kCk~~~av~~~r-------~~~~~C~~CF~~~ 64 (455)
..++|.-|+...|..++. .-..+|+.||..+
T Consensus 138 ~~~~C~vC~~~~A~~v~~~d~~~p~~P~~~C~~Cf~~l 175 (196)
T PF12251_consen 138 RRRKCSVCGIYPAKWVTYNDELAPEDPCFFCDSCFRLL 175 (196)
T ss_pred ccccCCCCCCCCCEEEEECCccCCCCCchhHHHHHHHh
Confidence 457899999988865442 2233899999876
No 191
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=20.18 E-value=1.4e+02 Score=28.51 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.3
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHH
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHEL 105 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l 105 (455)
.+.+|||+++||....=..+++..+
T Consensus 18 ~~k~IllgVtGSIAAyk~~~lvr~L 42 (209)
T PLN02496 18 RKPRILLAASGSVAAIKFGNLCHCF 42 (209)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHh
Confidence 3558999999988887777877766
Done!