Query 012855
Match_columns 455
No_of_seqs 299 out of 1776
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2k_A TRNA(Ile)-lysidine synt 100.0 6.1E-33 2.1E-37 291.4 22.9 225 66-327 2-230 (464)
2 1wy5_A TILS, hypothetical UPF0 100.0 1.4E-32 4.6E-37 275.3 24.3 228 60-327 2-232 (317)
3 1ni5_A Putative cell cycle pro 100.0 1.5E-30 5E-35 271.0 17.6 207 78-327 9-219 (433)
4 2dpl_A GMP synthetase, GMP syn 99.9 8.6E-21 2.9E-25 188.9 21.3 202 59-314 4-227 (308)
5 3k32_A Uncharacterized protein 99.8 4.9E-21 1.7E-25 179.5 7.0 170 83-305 7-178 (203)
6 3tqi_A GMP synthase [glutamine 99.8 8E-20 2.7E-24 194.4 11.2 163 82-285 230-397 (527)
7 2hma_A Probable tRNA (5-methyl 99.8 1.3E-19 4.3E-24 185.1 8.1 205 81-314 8-224 (376)
8 2ywb_A GMP synthase [glutamine 99.8 2E-18 6.8E-23 182.8 17.3 160 82-286 209-374 (503)
9 1sur_A PAPS reductase; assimil 99.8 2.7E-19 9.4E-24 168.8 9.5 170 66-289 33-204 (215)
10 2der_A TRNA-specific 2-thiouri 99.8 2.2E-19 7.7E-24 183.4 8.4 208 78-314 13-232 (380)
11 2c5s_A THII, probable thiamine 99.8 5.7E-18 2E-22 175.0 15.3 160 79-285 184-345 (413)
12 3bl5_A Queuosine biosynthesis 99.8 1.3E-18 4.4E-23 163.8 9.0 167 82-285 3-177 (219)
13 3uow_A GMP synthetase; structu 99.7 2.7E-16 9.4E-21 168.0 14.8 172 70-285 246-426 (556)
14 2o8v_A Phosphoadenosine phosph 99.7 2.3E-16 7.9E-21 152.5 12.7 159 82-289 45-205 (252)
15 1gpm_A GMP synthetase, XMP ami 99.7 2.7E-16 9.3E-21 167.2 14.3 161 83-285 228-395 (525)
16 1zun_A Sulfate adenylyltransfe 99.7 1.5E-16 5.2E-21 159.2 10.7 184 64-289 34-228 (325)
17 3p52_A NH(3)-dependent NAD(+) 99.7 5.6E-16 1.9E-20 149.5 13.1 148 82-284 26-175 (249)
18 2e18_A NH(3)-dependent NAD(+) 99.7 7.1E-16 2.4E-20 149.4 13.9 162 64-285 8-172 (257)
19 2pg3_A Queuosine biosynthesis 99.6 1.2E-15 4.2E-20 145.3 13.6 163 83-285 3-181 (232)
20 1k92_A Argininosuccinate synth 99.6 2.7E-15 9.2E-20 155.3 16.8 161 78-287 6-184 (455)
21 1kor_A Argininosuccinate synth 99.6 6.7E-15 2.3E-19 151.1 17.9 156 83-287 1-166 (400)
22 1xng_A NH(3)-dependent NAD(+) 99.6 6.5E-15 2.2E-19 143.5 13.4 150 81-285 24-175 (268)
23 2oq2_A Phosphoadenosine phosph 99.6 3.4E-15 1.2E-19 145.1 10.8 174 67-289 32-210 (261)
24 2nz2_A Argininosuccinate synth 99.6 1.4E-14 4.7E-19 149.2 15.3 156 82-287 5-174 (413)
25 3fiu_A NH(3)-dependent NAD(+) 99.6 1.8E-14 6.2E-19 139.0 13.9 147 82-284 29-184 (249)
26 2vxo_A GMP synthase [glutamine 99.6 1.7E-14 5.6E-19 157.6 13.6 177 82-286 240-435 (697)
27 2goy_A Adenosine phosphosulfat 99.5 1.1E-13 3.8E-18 135.4 10.7 170 66-289 43-219 (275)
28 2wsi_A FAD synthetase; transfe 99.4 1.2E-12 4.1E-17 129.9 13.5 195 38-287 7-215 (306)
29 1vl2_A Argininosuccinate synth 99.4 5.2E-12 1.8E-16 129.5 16.5 156 82-287 14-183 (421)
30 1vbk_A Hypothetical protein PH 99.3 2.6E-12 8.7E-17 127.6 7.7 125 80-283 177-307 (307)
31 1kqp_A NAD+ synthase, NH(3)-de 99.1 7.7E-10 2.6E-14 107.8 14.4 175 61-285 21-200 (271)
32 1wxi_A NH(3)-dependent NAD(+) 99.1 1.9E-09 6.5E-14 105.2 14.8 180 59-285 20-203 (275)
33 3n05_A NH(3)-dependent NAD(+) 99.0 1.2E-09 4.2E-14 117.6 13.9 146 82-282 326-473 (590)
34 3dpi_A NAD+ synthetase; ssgcid 99.0 2.7E-09 9.2E-14 104.4 14.0 154 83-285 47-212 (285)
35 3q4g_A NH(3)-dependent NAD(+) 98.9 1.2E-08 4.1E-13 99.6 14.1 186 56-284 18-211 (279)
36 3ilv_A Glutamine-dependent NAD 98.6 3.9E-07 1.3E-11 98.8 14.7 168 82-284 303-505 (634)
37 3fwk_A FMN adenylyltransferase 98.5 1.7E-06 5.8E-11 85.0 14.7 175 62-289 32-220 (308)
38 3sdb_A Glutamine-dependent NAD 98.4 3.1E-06 1.1E-10 92.4 14.5 150 83-281 362-521 (680)
39 3rjz_A N-type ATP pyrophosphat 98.1 1E-05 3.5E-10 76.9 10.6 139 83-287 5-144 (237)
40 1ct9_A Asparagine synthetase B 97.9 0.00018 6.1E-09 76.7 15.6 143 64-232 210-354 (553)
41 1jgt_A Beta-lactam synthetase; 97.6 0.00038 1.3E-08 73.4 13.5 134 59-232 220-354 (513)
42 4f4h_A Glutamine dependent NAD 97.6 0.0003 1E-08 75.2 12.4 171 56-282 279-453 (565)
43 1q15_A CARA; CMPR, (2S,5S)-5-c 97.6 0.00032 1.1E-08 73.9 12.0 134 60-232 218-351 (503)
44 3fdx_A Putative filament prote 94.5 0.12 4.1E-06 43.3 8.1 39 83-134 2-42 (143)
45 3tnj_A Universal stress protei 94.4 0.59 2E-05 39.3 12.5 39 82-133 6-44 (150)
46 3hgm_A Universal stress protei 94.0 0.13 4.3E-06 43.4 7.2 39 83-134 3-41 (147)
47 3dlo_A Universal stress protei 93.9 0.26 8.9E-06 42.5 9.2 98 83-228 25-127 (155)
48 3s3t_A Nucleotide-binding prot 92.5 0.97 3.3E-05 37.7 10.4 39 83-134 6-44 (146)
49 2z08_A Universal stress protei 92.4 2.4 8.1E-05 35.0 12.8 38 83-133 3-40 (137)
50 3loq_A Universal stress protei 92.0 0.99 3.4E-05 42.8 11.0 103 80-237 168-271 (294)
51 1jmv_A USPA, universal stress 92.0 2.7 9.2E-05 34.7 12.6 37 83-132 3-39 (141)
52 1tq8_A Hypothetical protein RV 91.1 0.86 2.9E-05 39.5 8.7 40 79-132 14-55 (163)
53 2dum_A Hypothetical protein PH 91.1 1.4 4.8E-05 37.9 10.1 39 82-133 5-43 (170)
54 3idf_A USP-like protein; unive 90.7 0.95 3.2E-05 37.4 8.3 39 83-134 2-41 (138)
55 3mt0_A Uncharacterized protein 90.3 1.9 6.6E-05 40.7 11.2 41 81-134 133-180 (290)
56 3fg9_A Protein of universal st 89.9 2.6 8.8E-05 35.6 10.6 39 83-134 16-56 (156)
57 1mjh_A Protein (ATP-binding do 88.1 2.6 8.9E-05 35.8 9.4 39 82-133 5-43 (162)
58 3olq_A Universal stress protei 86.3 6 0.00021 37.5 11.8 115 81-240 155-289 (319)
59 1q77_A Hypothetical protein AQ 85.9 1.2 4.1E-05 36.9 5.8 37 83-132 5-41 (138)
60 2gm3_A Unknown protein; AT3G01 85.9 3.9 0.00013 35.3 9.4 41 83-133 6-55 (175)
61 3nbm_A PTS system, lactose-spe 85.9 3 0.0001 34.1 8.0 76 83-175 7-90 (108)
62 3mt0_A Uncharacterized protein 82.6 7.3 0.00025 36.6 10.4 94 82-229 7-100 (290)
63 2p09_A A non-biological ATP bi 81.7 0.78 2.7E-05 33.6 2.3 29 36-65 23-56 (81)
64 3olq_A Universal stress protei 74.1 13 0.00043 35.2 9.3 38 83-133 8-45 (319)
65 3cis_A Uncharacterized protein 70.0 10 0.00034 36.0 7.5 39 82-133 171-209 (309)
66 3e15_A Glucose-6-phosphate 1-d 70.0 17 0.00058 35.4 9.1 81 63-158 40-121 (312)
67 3j20_P 30S ribosomal protein S 63.4 11 0.00039 27.0 4.7 31 35-66 18-48 (56)
68 2xzm_N RPS29E; ribosome, trans 62.7 6.3 0.00022 28.2 3.2 31 35-66 17-47 (55)
69 1e2b_A Enzyme IIB-cellobiose; 62.6 9 0.00031 31.0 4.6 38 84-134 5-42 (106)
70 2eqg_A Tumor necrosis factor, 60.6 7.1 0.00024 26.4 2.9 25 38-63 11-37 (49)
71 3u5c_d S36, YS29, 40S ribosoma 59.9 6.3 0.00022 28.3 2.8 31 35-66 18-48 (56)
72 3zqu_A Probable aromatic acid 58.0 14 0.00047 33.9 5.5 35 82-130 4-38 (209)
73 3loq_A Universal stress protei 57.3 22 0.00074 33.2 7.1 40 81-133 21-60 (294)
74 3ab8_A Putative uncharacterize 53.6 44 0.0015 30.4 8.5 65 81-167 153-217 (268)
75 3iz6_N 40S ribosomal protein S 49.8 7.3 0.00025 28.0 1.7 28 36-64 19-46 (56)
76 3lqk_A Dipicolinate synthase s 48.3 14 0.00049 33.5 3.9 40 80-133 5-45 (201)
77 2ejb_A Probable aromatic acid 46.3 24 0.00084 31.5 5.1 34 83-130 2-35 (189)
78 2vqe_N 30S ribosomal protein S 46.0 28 0.00095 25.3 4.4 28 35-65 21-48 (61)
79 3mcu_A Dipicolinate synthase, 43.7 19 0.00066 32.8 4.0 38 81-132 4-42 (207)
80 1qzu_A Hypothetical protein MD 42.4 18 0.00061 33.0 3.6 37 81-130 18-54 (206)
81 3qjg_A Epidermin biosynthesis 40.7 19 0.00065 31.9 3.4 35 83-131 6-40 (175)
82 1sbz_A Probable aromatic acid 38.8 37 0.0013 30.6 5.1 34 84-130 2-35 (197)
83 1p3y_1 MRSD protein; flavoprot 37.6 16 0.00056 32.9 2.5 35 82-130 8-42 (194)
84 1mvl_A PPC decarboxylase athal 37.6 27 0.00094 31.8 4.0 25 82-106 19-43 (209)
85 2lev_A LER; transcription regu 37.3 13 0.00045 26.7 1.4 26 420-454 32-57 (57)
86 2nly_A BH1492 protein, diverge 37.1 1.3E+02 0.0044 27.9 8.7 110 63-230 83-196 (245)
87 2d8v_A Zinc finger FYVE domain 36.6 13 0.00043 27.6 1.3 29 35-65 8-39 (67)
88 1g63_A Epidermin modifying enz 33.5 21 0.00071 31.8 2.5 36 83-132 3-38 (181)
89 3nwp_A 6-phosphogluconolactona 33.2 68 0.0023 29.5 6.1 55 63-138 23-78 (233)
90 2dar_A PDZ and LIM domain prot 32.4 38 0.0013 25.9 3.6 28 37-65 53-83 (90)
91 3lwd_A 6-phosphogluconolactona 31.9 1E+02 0.0036 28.0 7.1 56 81-154 31-87 (226)
92 3hn6_A Glucosamine-6-phosphate 31.1 1.4E+02 0.0046 28.4 8.0 42 82-134 53-95 (289)
93 2eqe_A Tumor necrosis factor, 30.8 40 0.0014 22.9 2.8 12 52-64 31-42 (48)
94 2l2q_A PTS system, cellobiose- 30.1 51 0.0018 26.3 4.2 23 84-106 6-28 (109)
95 3tx2_A Probable 6-phosphogluco 29.1 95 0.0032 28.8 6.4 70 63-154 25-95 (251)
96 2k5c_A Uncharacterized protein 29.0 12 0.0004 28.9 0.0 13 363-375 8-20 (95)
97 3lhi_A Putative 6-phosphogluco 29.0 77 0.0026 29.0 5.7 55 63-138 20-75 (232)
98 3eb9_A 6-phosphogluconolactona 28.4 1.1E+02 0.0039 28.5 6.9 46 81-138 34-81 (266)
99 3n0v_A Formyltetrahydrofolate 27.9 3.7E+02 0.013 25.3 10.4 102 82-244 90-191 (286)
100 2cur_A Skeletal muscle LIM-pro 27.6 36 0.0012 24.4 2.5 28 37-65 33-63 (69)
101 3ab8_A Putative uncharacterize 26.2 72 0.0025 28.9 5.0 36 84-132 2-37 (268)
102 1l8d_A DNA double-strand break 26.2 14 0.00046 29.9 -0.1 13 363-375 47-59 (112)
103 3oc6_A 6-phosphogluconolactona 26.2 94 0.0032 28.7 5.8 70 63-154 25-95 (248)
104 3ico_A 6PGL, 6-phosphogluconol 25.9 1.1E+02 0.0036 28.8 6.2 70 63-154 41-111 (268)
105 2gvi_A Conserved hypothetical 25.5 14 0.00049 33.5 -0.1 30 33-63 170-202 (204)
106 3czc_A RMPB; alpha/beta sandwi 25.5 81 0.0028 25.2 4.6 24 83-106 19-43 (110)
107 2qv5_A AGR_C_5032P, uncharacte 25.0 4.2E+02 0.014 24.6 10.8 127 63-247 110-241 (261)
108 1x62_A C-terminal LIM domain p 24.9 35 0.0012 25.4 2.1 28 37-65 43-73 (79)
109 3clv_A RAB5 protein, putative; 24.4 87 0.003 26.3 4.9 46 267-312 162-207 (208)
110 1x61_A Thyroid receptor intera 24.0 45 0.0015 24.1 2.5 28 37-65 35-65 (72)
111 2l4z_A DNA endonuclease RBBP8, 23.7 31 0.0011 28.4 1.7 27 37-64 90-121 (123)
112 3lou_A Formyltetrahydrofolate 23.7 4.7E+02 0.016 24.7 11.0 102 82-244 95-196 (292)
113 1tqe_X Histone deacetylase 9; 23.5 23 0.00078 21.0 0.5 15 436-450 8-22 (26)
114 3cis_A Uncharacterized protein 22.9 88 0.003 29.2 5.0 39 82-133 19-57 (309)
115 2d8x_A Protein pinch; LIM doma 21.5 40 0.0014 24.2 1.7 28 37-65 33-63 (70)
No 1
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=100.00 E-value=6.1e-33 Score=291.35 Aligned_cols=225 Identities=15% Similarity=0.144 Sum_probs=185.2
Q ss_pred HHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhH
Q 012855 66 FGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEID 145 (455)
Q Consensus 66 ~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~ 145 (455)
.+||+++|.+++++.++++|+||+|||+||+|||++|.++... .++++.++|||||. ++. +.+
T Consensus 2 ~~kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~-------------~~~~v~avhvdhgl-rg~---~s~ 64 (464)
T 3a2k_A 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDE-------------WKLQVIAAHVDHMF-RGR---ESE 64 (464)
T ss_dssp CSHHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHT-------------TTCBCEEEEEECTT-CTH---HHH
T ss_pred hHHHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHH-------------cCCeEEEEEEECCC-Ccc---ccH
Confidence 3589999999999999999999999999999999999987431 26899999999995 431 234
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcc
Q 012855 146 NAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLG 225 (455)
Q Consensus 146 ~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lG 225 (455)
.+.+.++++|+++ |+++++++++.. .+.. ....+.|..++.+||.+|.++|+++|+++|++|
T Consensus 65 ~~~~~v~~~~~~l---gi~~~v~~~~~~-------------~~~~--~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~Iatg 126 (464)
T 3a2k_A 65 EEMEFVKRFCVER---RILCETAQIDVP-------------AFQR--SAGLGAQEAARICRYRFFAELMEKHQAGYVAVG 126 (464)
T ss_dssp HHHHHHHHHHHHT---TCEEEEEECCCH-------------HHHT--TTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECC
T ss_pred HHHHHHHHHHHHc---CCcEEEEEechh-------------hhhh--ccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEe
Confidence 5778899999998 799999887521 1111 123578999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhccCCCCCCccccccc--CCCCcceEecCccccHHHHHHHHHHcCCCcccccCC--CCCcHHHHHH
Q 012855 226 LCTSRIACHVITATVKGRGYSLPADIQYAD--ARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQ--THSGINGLVS 301 (455)
Q Consensus 226 h~~ddlAet~L~nl~~GrG~sl~~~~~~~~--~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~--~~~Si~~l~~ 301 (455)
||.||+|||+|+++.+|.|.. ...++.. ...+..+||||++++++||..|++.+||+++.++++ .....+.++.
T Consensus 127 H~~dD~aEt~L~~l~rG~g~~--gL~gm~~~~~~~~~~iiRPLl~~~k~eI~~ya~~~gl~~~~d~sn~~~~~~Rn~iR~ 204 (464)
T 3a2k_A 127 HHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSPRCDPSNEKDDYTRNRFRH 204 (464)
T ss_dssp CCHHHHHHHHHHHHHHCCCSS--STTCSCSEEECSSSEEECGGGGSCHHHHHHHHHHTCCSSCSCTTCCCTTSHHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCCcc--cccCCCccccCCCCEEECCCccCcHHHHHHHHHHcCCCeEECCCCCCccchHHHHHH
Confidence 999999999999999999843 2222211 112468999999999999999999999999986654 3456677778
Q ss_pred HHHHHHHHhCCChHHHHHHhHhhhCC
Q 012855 302 SFVKILQEENPSRESTIMRTAGKLTP 327 (455)
Q Consensus 302 ~fi~~Le~~~Pstv~tI~rT~~KL~~ 327 (455)
++++.|++.||+++.+++|+++++..
T Consensus 205 ~~lp~L~~~~p~~~~~l~r~a~~~~~ 230 (464)
T 3a2k_A 205 HIVPLLRQENPRLHERFQQYSEMMAE 230 (464)
T ss_dssp THHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCchHHHHHHHHHHHHHH
Confidence 89999999999999999999998874
No 2
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=100.00 E-value=1.4e-32 Score=275.32 Aligned_cols=228 Identities=16% Similarity=0.150 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceE-EEEEEEeCCCCCC
Q 012855 60 CFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFG-VGVVFVDETAYYP 138 (455)
Q Consensus 60 CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~-l~vv~VD~~~~~~ 138 (455)
|....+.++|++++.++.++.++++|+||+|||+||++||+++.++.. ..+++ +.++|||||. ++
T Consensus 2 ~~~~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~-------------~~g~~~v~av~vd~g~-r~ 67 (317)
T 1wy5_A 2 NPESRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKN-------------YFSLKEVALAHFNHML-RE 67 (317)
T ss_dssp CHHHHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTT-------------TTTCSEEEEEEEECCS-ST
T ss_pred ccHHHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHH-------------HcCCCEEEEEEEECCC-Cc
Confidence 566778999999999999999999999999999999999999986521 13688 9999999995 43
Q ss_pred CCCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 012855 139 VPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENG 218 (455)
Q Consensus 139 ~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g 218 (455)
+.+.+.+.++++|+++ |+++++++++. ..+... ...+.|..++.+||.+|.++|+++|
T Consensus 68 ----~s~~~~~~v~~~a~~l---gi~~~v~~~~~-------------~~~~~~--~~~~~e~~ar~~Ry~~l~~~a~~~g 125 (317)
T 1wy5_A 68 ----SAERDEEFCKEFAKER---NMKIFVGKEDV-------------RAFAKE--NRMSLEEAGRFLRYKFLKEILESEG 125 (317)
T ss_dssp ----HHHHHHHHHHHHHHHH---TCCEEEEECCH-------------HHHHHH--TTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----ccHHHHHHHHHHHHHc---CCcEEEEEEec-------------hhhhcc--CCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 2345778899999999 79999988652 111111 2357899999999999999999999
Q ss_pred CcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcccccCC--CCCcH
Q 012855 219 YNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQ--THSGI 296 (455)
Q Consensus 219 ~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~--~~~Si 296 (455)
+++|++|||.||++||+|+++.+|.|. +...++. +....+||||++++++||..|++.+|++++.++++ .....
T Consensus 126 ~~~i~~Gh~~dD~~Et~l~~l~rg~g~--~gl~~~~--~~~~~iirPLl~~~k~eI~~~~~~~gl~~~~d~sn~~~~~~R 201 (317)
T 1wy5_A 126 FDCIATAHHLNDLLETSLLFFTRGTGL--DGLIGFL--PKEEVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPR 201 (317)
T ss_dssp CSEEECCCCHHHHHHHHHHHHHHCCCH--HHHHCSC--SEETTEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGTCCHHH
T ss_pred CCEEEEeCchhHHHHHHHHHHHhCCCc--ccccCCC--CCCCeEECCCccCCHHHHHHHHHHcCCCeeECCCCCCCccHH
Confidence 999999999999999999999999983 2222221 11237999999999999999999999999986654 23445
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHhHhhhCC
Q 012855 297 NGLVSSFVKILQEENPSRESTIMRTAGKLTP 327 (455)
Q Consensus 297 ~~l~~~fi~~Le~~~Pstv~tI~rT~~KL~~ 327 (455)
+.+++++++.|++.||+++.+++|+++++..
T Consensus 202 n~iR~~~lp~L~~~~p~~~~~l~~~~~~~~~ 232 (317)
T 1wy5_A 202 NRIRHRVIPELKRINENLEDTFLKMVKVLRA 232 (317)
T ss_dssp HHHHHTHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHHHHHHHH
Confidence 6666779999999999999999999999985
No 3
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=99.97 E-value=1.5e-30 Score=271.01 Aligned_cols=207 Identities=18% Similarity=0.133 Sum_probs=169.7
Q ss_pred CCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHh
Q 012855 78 LITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSN 157 (455)
Q Consensus 78 li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~ 157 (455)
++.++++|+||+|||+||+|||++|.++... ..++++.++|||||. ++. .+++.+.++++|++
T Consensus 9 ~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~------------~~g~~v~avhvdhgl-r~~----s~~~~~~v~~~~~~ 71 (433)
T 1ni5_A 9 QLLTSRQILVAFSGGLDSTVLLHQLVQWRTE------------NPGVALRAIHVHHGL-SAN----ADAWVTHCENVCQQ 71 (433)
T ss_dssp HHTTCSEEEEECCSBHHHHHHHHHHHHHHTT------------STTCEEEEEEECCSC-CSS----HHHHHHHHHHHHHH
T ss_pred hcCCCCEEEEEEcchHHHHHHHHHHHHHHHh------------cCCCeEEEEEEECCC-Ccc----cHHHHHHHHHHHHH
Confidence 5778999999999999999999999886421 037899999999995 532 24567889999999
Q ss_pred hCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHH
Q 012855 158 LSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVIT 237 (455)
Q Consensus 158 l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~ 237 (455)
+ |+++++++++.. ....+.|..++.+||.+|.++|+ ++++|++|||.||+|||+|+
T Consensus 72 l---gi~~~v~~~~~~-------------------~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~dD~aEt~L~ 127 (433)
T 1ni5_A 72 W---QVPLVVERVQLA-------------------QEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQCETFLL 127 (433)
T ss_dssp T---TCCEEEECCCCC-------------------CSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCHHHHHHHHHH
T ss_pred c---CCcEEEEEecCC-------------------CCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccchHHHHHHHH
Confidence 8 799999887531 11346788999999999999997 49999999999999999999
Q ss_pred HHhccCCCCCCcccccccC--CCCcceEecCccccHHHHHHHHHHcCCCcccccCC--CCCcHHHHHHHHHHHHHHhCCC
Q 012855 238 ATVKGRGYSLPADIQYADA--RWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQ--THSGINGLVSSFVKILQEENPS 313 (455)
Q Consensus 238 nl~~GrG~sl~~~~~~~~~--~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~--~~~Si~~l~~~fi~~Le~~~Ps 313 (455)
++.+|.|.. ...++... ..++.+||||++++++||..|++.+||++++++++ .....+.++.++++.|++.||+
T Consensus 128 ~l~RG~g~~--gL~gm~~~~~~~~~~iiRPLl~~~k~eI~~y~~~~gl~~~~D~sn~~~~~~Rn~iR~~~lp~L~~~~p~ 205 (433)
T 1ni5_A 128 ALKRGSGPA--GLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPH 205 (433)
T ss_dssp HHTTTCCTT--GGGCCCSEEEETTEEEECGGGSCCHHHHHHHHHHTTCCCBCCCCGGGTTSHHHHHHHTHHHHHHHHCTT
T ss_pred HHHcCCCcc--cccCCCCccccCCceEEccCccCCHHHHHHHHHHcCCCeEECCCCCCcccchHHHHHHHHHHHHHHCch
Confidence 999999843 22222111 13578999999999999999999999999986654 3456777788999999999999
Q ss_pred hHHHHHHhHhhhCC
Q 012855 314 RESTIMRTAGKLTP 327 (455)
Q Consensus 314 tv~tI~rT~~KL~~ 327 (455)
+..+|+|+++++..
T Consensus 206 ~~~~l~r~~~~~~~ 219 (433)
T 1ni5_A 206 FAEATARSAALCAE 219 (433)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 4
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.87 E-value=8.6e-21 Score=188.90 Aligned_cols=202 Identities=15% Similarity=0.143 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCC
Q 012855 59 DCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYP 138 (455)
Q Consensus 59 ~CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~ 138 (455)
+||.+.....+|..++ +++|+||+|||+||++|++++++.. ++++.++|||+|. .+
T Consensus 4 ~~~~~~~~~~ir~~v~-------~~kvlvalSGGvDSsvla~ll~~~~----------------g~~v~av~vd~g~-~~ 59 (308)
T 2dpl_A 4 GRFVEEKVREIRETVG-------DSKAIIALSGGVDSSTAAVLAHKAI----------------GDRLHAVFVNTGF-LR 59 (308)
T ss_dssp HHHHHHHHHHHHHHHT-------TSCEEEECCSSHHHHHHHHHHHHHH----------------GGGEEEEEEECSC-CC
T ss_pred HHHHHHHHHHHHHHhC-------CCCEEEEEeChHHHHHHHHHHHHhh----------------CCCEEEEEEcCCC-CC
Confidence 6788888888887663 4799999999999999999998641 5788999999985 32
Q ss_pred CCCchhHHHHHHHHHHH-HhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHHHH
Q 012855 139 VPSSEIDNAIQEIKLIV-SNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATG---KEDLLLQLRMLSLQKFA 214 (455)
Q Consensus 139 ~s~~e~~~~~~~v~~~~-~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~ts---red~~~~lRr~lL~~~A 214 (455)
. ...+.+++.+ +.+ |++++++++++.| ++.+...+. ++.+|+..|++++.++|
T Consensus 60 ~------~e~~~~~~~~a~~l---gi~~~vv~~~~~f--------------~~~l~~~~~pe~~~~~~~~~~~~~l~~~A 116 (308)
T 2dpl_A 60 K------GEPEFVVKTFRDEF---GMNLHYVDAQDRF--------------FSALKGVTDPEEKRKIIGRVFIEVFEEVA 116 (308)
T ss_dssp T------THHHHHHHHHTTTT---CCEEEEEECHHHH--------------HHHTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred h------HHHHHHHHHHHHHc---CCcEEEEECCHHH--------------HHhhhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 1344566644 466 7999999876432 122222223 35677788999999999
Q ss_pred HHcCCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc---ccCC
Q 012855 215 SENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE---LLNQ 291 (455)
Q Consensus 215 ~~~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~---~~~~ 291 (455)
+++|+++|++|||.||++|+.. .+ .++.. .+......++.++|||++++++||..|++.+|+|+.. .+++
T Consensus 117 ~~~g~~~la~Gh~~dD~~Et~~-~i-----ks~~~-~~~l~~~~~~~virPL~~l~K~EI~~~a~~~glp~~i~~~~P~~ 189 (308)
T 2dpl_A 117 KKIGAEYLIQGTIAPDWIESQG-KI-----KSHHN-VGGLPEKLNLKLIEPLRDLYKDEVRELAKFLGLPEKIYNRMPFP 189 (308)
T ss_dssp HHHTCSEEECCCCCC----------------------------CCCEEECTTTTCCHHHHHHHHHHTTCCHHHHTCCCCC
T ss_pred HHcCcCEEEECCCCccchhhcc-ch-----hhhhc-cccCCccCCCeEEEEcccCCHHHHHHHHHHhCCCceeeecCCCC
Confidence 9999999999999999999742 11 01111 1111222357899999999999999999999999732 1111
Q ss_pred -CCC--------------cHHHHHHHHHHHHHHhCCCh
Q 012855 292 -THS--------------GINGLVSSFVKILQEENPSR 314 (455)
Q Consensus 292 -~~~--------------Si~~l~~~fi~~Le~~~Pst 314 (455)
+.. .++...+.++..|++.||.+
T Consensus 190 ~~~La~R~~g~~t~~~l~~~r~~~~~l~~~~~~~~~~~ 227 (308)
T 2dpl_A 190 GPGLAVRVIGEVTPEKIRIVREANAIVEEEVERAGLRP 227 (308)
T ss_dssp TTGGGGGBSSSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cccccccccCcccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 100 13344555666777777765
No 5
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=4.9e-21 Score=179.55 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=119.7
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
++|+||+|||+||++||+++.++ ++++.++|||++. .+ ..+.++++|+.+ |
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~-----------------g~~v~~~~v~~~~-~~--------~~~~~~~~a~~l---g 57 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKL-----------------GYNPHLITINFGV-IP--------SYKLAEETAKIL---G 57 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHT-----------------TEEEEEEEEECSS-SC--------TTHHHHHHHHHH---T
T ss_pred CeEEEEEECcHHHHHHHHHHHHc-----------------CCCeEEEEEeCCC-ch--------HHHHHHHHHHHh---C
Confidence 58999999999999999998643 6899999999985 33 235688899998 7
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhcc
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKG 242 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~G 242 (455)
+++++++++..+. ...+..+.. ...++..|...|+.+|.++|+ |+++|++|||.||+++|+++.
T Consensus 58 i~~~~~~~~~~~~------~~~~~~~~~----~~~~~~~c~~~~~~~l~~~A~--g~~~i~tGh~~dD~~et~~~~---- 121 (203)
T 3k32_A 58 FKHKVITLDRKIV------EKAADMIIE----HKYPGPAIQYVHKTVLEILAD--EYSILADGTRRDDRVPKLSYS---- 121 (203)
T ss_dssp CEEEEEECCTHHH------HHHHHHHHH----HSSSHHHHHHHHHHHHHHHTT--TCSEEECCCCTTCCSSCCCHH----
T ss_pred CCEEEEECCHHHH------HHHHHHHHh----cCCCccHHHHHHHHHHHHHhc--CCCEEEECCCcccchhhcchh----
Confidence 9999998764321 011222221 112455677788888888887 999999999999999976431
Q ss_pred CCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcccccCCC--CCcHHHHHHHHHH
Q 012855 243 RGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQT--HSGINGLVSSFVK 305 (455)
Q Consensus 243 rG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~--~~Si~~l~~~fi~ 305 (455)
| + .++ ..+.++.++|||..++++||..|++.. |.|.++++.. +...+..+++++.
T Consensus 122 -g--l---~~~-~~~~~~~iirPLl~~~k~eI~~~a~~~-l~~~~~~sn~~~~~dy~~~~r~~l~ 178 (203)
T 3k32_A 122 -E--I---QSL-EMRKNIQYITPLMGFGYKTLRHLASEF-FILEEIKSGTKLSSDYEAEIRHILK 178 (203)
T ss_dssp -H--H---HHH-HHHHTCEEECGGGGCCHHHHHHHHHHH-EEEEEECC------CTHHHHHHHHH
T ss_pred -h--c---cCc-ccccCCeEEeccCCCCHHHHHHHHHHh-CCcccCCCCCCCCCcHHHHHHHHHh
Confidence 1 1 111 112357899999999999999999988 8888755432 2233344444443
No 6
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.80 E-value=8e-20 Score=194.40 Aligned_cols=163 Identities=18% Similarity=0.206 Sum_probs=112.1
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+++|+||||||+||+||++++++.. ++++.+||||+|. ... . +..+..+.+++++
T Consensus 230 ~~kvlvalSGGvDSsvla~ll~~~~----------------G~~v~av~vd~g~-~~~--~---e~~~~~~~~a~~l--- 284 (527)
T 3tqi_A 230 KEQVIVGLSGGVDSAVTATLVHKAI----------------GDQLVCVLVDTGL-LRL--N---EVDEVLNVFQKHL--- 284 (527)
T ss_dssp TSCEEEECTTTHHHHHHHHHHHHHH----------------GGGEEEEEECCSC-SCT--T---HHHHHHHHHTTSS---
T ss_pred CCeEEEEEecCcCHHHHHHHHHHHh----------------CCeEEEEEeccCC-CCh--h---HHHHHHHHHHHHc---
Confidence 3799999999999999999998641 5789999999996 321 1 2223344588887
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDAT---GKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITA 238 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~t---sred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~n 238 (455)
|++++++++++.|.. .+...+ .++.+|+..+++++.++|+++|+++|++|||.+|++|+.+++
T Consensus 285 gi~~~vv~~~~~~~~--------------~l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~Et~~~~ 350 (527)
T 3tqi_A 285 GAKVICVDAKDRFMK--------------ALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVIESAKTK 350 (527)
T ss_dssp CCEEEEECCHHHHHS--------------SSSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHHCC----
T ss_pred CCcEEEEeChHHHHH--------------hhcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccccccccC
Confidence 799999988764422 122222 245667778899999999999999999999999999999877
Q ss_pred HhccCCCCCCccccc--ccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 239 TVKGRGYSLPADIQY--ADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 239 l~~GrG~sl~~~~~~--~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
. |++..+....+. .....+++++|||++++|+||..|++..|||+
T Consensus 351 ~--g~~~~ik~~~~l~gl~~~~~~~iirPL~~l~K~EIr~~a~~lGlp~ 397 (527)
T 3tqi_A 351 T--GKGHIIKTHHNVGGLPLNMELKLIEPLRELFKDEVRKLGLELGLPA 397 (527)
T ss_dssp ------------------------CEECTTTTCCHHHHHHHHHHHTCCH
T ss_pred C--ChhheeeeecccccCcccccCccccchhcCCHHHHHHHHHHcCCCh
Confidence 3 332222211110 11223578999999999999999999999998
No 7
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.78 E-value=1.3e-19 Score=185.12 Aligned_cols=205 Identities=14% Similarity=0.167 Sum_probs=141.4
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCC--CchhHHHHHHHHHHHHhh
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVP--SSEIDNAIQEIKLIVSNL 158 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s--~~e~~~~~~~v~~~~~~l 158 (455)
++++|+||+|||+||++++++|.+. ++++.+||++++. .+.. .....+..+.++.+|+++
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~~-----------------G~~V~~v~~~~~~-~~~~~~~c~~~~d~~~a~~va~~l 69 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKEQ-----------------GYDVIGIFMKNWD-DTDENGVCTATEDYKDVVAVADQI 69 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHHT-----------------TCEEEEEEEECCC-CCC----CHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHc-----------------CCcEEEEEEECCC-cccccccCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999763 7899999999874 3210 001235678899999999
Q ss_pred CCCCCcEEEEeccccccCCCCChhHHHHHHHhhcC--CCCCHHHHHHH-HHHHHHHHHHHHcCCcEEEcccchhHHH-HH
Q 012855 159 SPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVS--DATGKEDLLLQ-LRMLSLQKFASENGYNRLLLGLCTSRIA-CH 234 (455)
Q Consensus 159 ~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~--s~tsred~~~~-lRr~lL~~~A~~~g~~~l~lGh~~ddlA-et 234 (455)
|+|++++++++.|.. .-+..+++... ...++|..|.. +|+..|.++|+++|+++|++||+.+|.+ ++
T Consensus 70 ---GIp~~vv~~~~~~~~------~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~~~ 140 (376)
T 2hma_A 70 ---GIPYYSVNFEKEYWD------RVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDED 140 (376)
T ss_dssp ---TCCEEEEECHHHHHH------HTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEECSS
T ss_pred ---CCcEEEEeChHHHHH------HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhhCCC
Confidence 799999998754411 00122232221 22368988865 4789999999999999999999999987 55
Q ss_pred HHHHHhccCCCCCCcccccccCC---C-CcceEecCccccHHHHHHHHHHcCCCcccccCCCCCc-H-HHHHHHHHHHHH
Q 012855 235 VITATVKGRGYSLPADIQYADAR---W-EIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSG-I-NGLVSSFVKILQ 308 (455)
Q Consensus 235 ~L~nl~~GrG~sl~~~~~~~~~~---~-~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~~~S-i-~~l~~~fi~~Le 308 (455)
.++++.+|.+. ..+..+.-.. . ...+++||.+++++||..||+..||++...+++.... + +...++||..+.
T Consensus 141 ~~~~l~rg~d~--~kdqsyfL~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~~cf~~~~~~~~fL~~~~ 218 (376)
T 2hma_A 141 GTVHMLRGVDN--GKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYL 218 (376)
T ss_dssp SCEEEEECSST--TTCCGGGGTTCCHHHHTTEECTTTTCCHHHHHHHHHHTTCTTTTCCCCCSCTTTTTSCHHHHHHTTS
T ss_pred chhhhhhcccc--ccccchhccCCChhhcCcEEecCcCCCHHHHHHHHHHcCCCcccCCCCCCccccCchhHHHHHHHHh
Confidence 55555555432 1111111111 1 2689999999999999999999999987543332210 1 223577887766
Q ss_pred HhCCCh
Q 012855 309 EENPSR 314 (455)
Q Consensus 309 ~~~Pst 314 (455)
...|+.
T Consensus 219 ~~~pG~ 224 (376)
T 2hma_A 219 PAQPGR 224 (376)
T ss_dssp CCCCEE
T ss_pred hcCCCC
Confidence 667774
No 8
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.78 E-value=2e-18 Score=182.78 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=116.1
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+++|+||+|||+||+||++++++. ++++.+||||+|..+. ...+.++++++++
T Consensus 209 ~~kvvvalSGGvDSsvla~ll~~~-----------------g~~v~av~vd~g~~~~-------~e~~~v~~~~~~l--- 261 (503)
T 2ywb_A 209 KDRVLLAVSGGVDSSTLALLLAKA-----------------GVDHLAVFVDHGLLRL-------GEREEVEGALRAL--- 261 (503)
T ss_dssp TSEEEEEECSSHHHHHHHHHHHHH-----------------TCEEEEEEEECSCSCT-------THHHHHHHHHHHT---
T ss_pred CccEEEEecCCcchHHHHHHHHHc-----------------CCeEEEEEEeCCCCCh-------HHHHHHHHHHHHh---
Confidence 479999999999999999999864 5789999999995321 2457788999987
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHHHHHHc-CCcEEEcccchhHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATG---KEDLLLQLRMLSLQKFASEN-GYNRLLLGLCTSRIACHVIT 237 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~ts---red~~~~lRr~lL~~~A~~~-g~~~l~lGh~~ddlAet~L~ 237 (455)
|++++++++++.| ++.+...+. ++.+|+..|+++|.++|+++ |+++|++|||.+|++|+.++
T Consensus 262 gi~~~vv~~~~~f--------------~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~~Et~~~ 327 (503)
T 2ywb_A 262 GVNLLVVDAKERF--------------LKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGG 327 (503)
T ss_dssp TCCEEEEECHHHH--------------HHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHHHC----
T ss_pred CCCEEEEECcHHH--------------HHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccchhhccC
Confidence 7999999876533 111122222 35667777899999999999 99999999999999998542
Q ss_pred HHhccCCCCCCcc--cccccCCCCcceEecCccccHHHHHHHHHHcCCCcc
Q 012855 238 ATVKGRGYSLPAD--IQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 238 nl~~GrG~sl~~~--~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
|....+... .+......++.++|||++++++||..|++.+|||+.
T Consensus 328 ----g~~~~iks~~~l~~l~~~~~~~ii~PL~~l~K~EVr~~a~~~glp~~ 374 (503)
T 2ywb_A 328 ----HGAAKIKSHHNVGGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDT 374 (503)
T ss_dssp -----------------CCCSSCCCEEECTTTTCCHHHHHHHHHHTTCCHH
T ss_pred ----CcccccccccccccccccccCceEehhhcCCHHHHHHHHHHcCCChh
Confidence 211111111 111122335789999999999999999999999974
No 9
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.78 E-value=2.7e-19 Score=168.78 Aligned_cols=170 Identities=16% Similarity=0.134 Sum_probs=120.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhH
Q 012855 66 FGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEID 145 (455)
Q Consensus 66 ~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~ 145 (455)
..+++.++..+ +++|+||+|||+||+||||+|.++ .+++.+||||+|. .. .
T Consensus 33 ~~~l~~~~~~~-----~~~v~Va~SGGkDS~vLL~ll~~~-----------------~~~v~~v~vd~g~-~~------~ 83 (215)
T 1sur_A 33 EGRVAWALDNL-----PGEYVLSSSFGIQAAVSLHLVNQI-----------------RPDIPVILTDTGY-LF------P 83 (215)
T ss_dssp HHHHHHHHHHC-----CSEEEEECCCCTTHHHHHHHHHHH-----------------STTCEEEEEECSC-BC------H
T ss_pred HHHHHHHHHHc-----CCCEEEEecCCHHHHHHHHHHHHh-----------------CCCCeEEEeeCCC-CC------H
Confidence 34555555543 579999999999999999999876 2467799999995 31 2
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhh-cCC-CCCHHHHHHHHHHHHHHHHHHHcCCcEEE
Q 012855 146 NAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDS-VSD-ATGKEDLLLQLRMLSLQKFASENGYNRLL 223 (455)
Q Consensus 146 ~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~-~~s-~tsred~~~~lRr~lL~~~A~~~g~~~l~ 223 (455)
+..+.++++++++ |++++++..+..+ .+.... ... ... ...++..|..++...|.++++++|+++|+
T Consensus 84 e~~~~v~~~~~~~---gi~~~v~~~~~~~-------~~~~~~-~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~ 152 (215)
T 1sur_A 84 ETYRFIDELTDKL---KLNLKVYRATESA-------AWQEAR-YGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWF 152 (215)
T ss_dssp HHHHHHHHHHHHT---TCEEEEEECSSCH-------HHHHHH-HCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHh---CCcEEEEeCCCCH-------HHHHHh-cCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 4678899999998 7999988754211 000111 100 000 01235577788888999999999999999
Q ss_pred cccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccccc
Q 012855 224 LGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELL 289 (455)
Q Consensus 224 lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~ 289 (455)
+||+.||.+.+. + ++.. ....++.+||||.+++++||..|++.++||+....
T Consensus 153 ~G~r~dd~~~r~--------~--~~~~----~~~~~~~~i~PLl~~t~~dI~~y~~~~~lp~~~lY 204 (215)
T 1sur_A 153 AGLRREQSGSRA--------N--LPVL----AIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLW 204 (215)
T ss_dssp CCCCTTSSSTTT--------T--CCSE----EEETTEEEECTTTTCCHHHHHHHHHHHTCCCCGGG
T ss_pred EEeehhhhhhhc--------C--CCcc----ccCCCEEEEechHhCCHHHHHHHHHHhCCCCChHH
Confidence 999999853211 1 1111 11235679999999999999999999999987643
No 10
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.77 E-value=2.2e-19 Score=183.37 Aligned_cols=208 Identities=15% Similarity=0.189 Sum_probs=138.7
Q ss_pred CCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCc--hhHHHHHHHHHHH
Q 012855 78 LITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSS--EIDNAIQEIKLIV 155 (455)
Q Consensus 78 li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~--e~~~~~~~v~~~~ 155 (455)
|-.++++|+||+|||+||++++++|.+. ++++.+||+|++. .+.... ...++.+.++.+|
T Consensus 13 ~~~~~~kVvVa~SGGvDSsv~a~lL~~~-----------------G~~V~~v~~~~~~-~~~~~~~~~s~~d~~~a~~va 74 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWLLQQQ-----------------GYQVEGLFMKNWE-EDDGEEYCTAAADLADAQAVC 74 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHHHHTT-----------------CCEEEEEEEECCC-CCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHHHc-----------------CCeEEEEEEEcCc-cccccCCCCCHHHHHHHHHHH
Confidence 5567789999999999999999999753 7899999999863 210000 1234678899999
Q ss_pred HhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcC--CCCCHHHHHHHH-HHHHHHHHHHH-cCCcEEEcccchhHH
Q 012855 156 SNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVS--DATGKEDLLLQL-RMLSLQKFASE-NGYNRLLLGLCTSRI 231 (455)
Q Consensus 156 ~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~--s~tsred~~~~l-Rr~lL~~~A~~-~g~~~l~lGh~~ddl 231 (455)
+++ |+|++++++++.|.. .-+..+++... ...++|..|... |+..|.++|++ +|+++|++||+.+|.
T Consensus 75 ~~L---GIp~~vvd~~~~f~~------~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~ 145 (380)
T 2der_A 75 DKL---GIELHTVNFAAEYWD------NVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRA 145 (380)
T ss_dssp HHH---TCCEEEEECHHHHHH------HTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEE
T ss_pred HHc---CCcEEEEeCcHHHHH------HHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccc
Confidence 999 799999998754411 00112222221 224689999874 89999999999 999999999999998
Q ss_pred HHHHHHHHhccCCCCCCcccccccC---CCC-cceEecCccccHHHHHHHHHHcCCCcccccCCCCCc--HHHHHHHHHH
Q 012855 232 ACHVITATVKGRGYSLPADIQYADA---RWE-IPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSG--INGLVSSFVK 305 (455)
Q Consensus 232 Aet~L~nl~~GrG~sl~~~~~~~~~---~~~-v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~~~~S--i~~l~~~fi~ 305 (455)
+++.++++.+|.+. ..+..+.-. ..+ ..+++||.+++++||..|++..||++...+++...- -+...++||.
T Consensus 146 ~~~~~~~l~rg~~~--~kdqsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~~~kp~s~~~cf~~~~~~~~fL~ 223 (380)
T 2der_A 146 DVDGKSRLLRGLDS--NKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLG 223 (380)
T ss_dssp EETTEEEEECCSST--TTCCGGGGSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC----------------CHHHHHH
T ss_pred cccchHHHhccccc--ccccceeecCCChhhcceeEccCCCCCHHHHHHHHHHcCCCCccCCCCCCccccCchHHHHHHH
Confidence 87766666666542 222222111 112 689999999999999999999999977533221110 1234677887
Q ss_pred HHHHhCCCh
Q 012855 306 ILQEENPSR 314 (455)
Q Consensus 306 ~Le~~~Pst 314 (455)
.+....|+.
T Consensus 224 ~~~~~~pG~ 232 (380)
T 2der_A 224 RYLPAQPGK 232 (380)
T ss_dssp TTSCCCCCE
T ss_pred HhhhhCCCC
Confidence 776667874
No 11
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.76 E-value=5.7e-18 Score=175.02 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=120.6
Q ss_pred CCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhh
Q 012855 79 ITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNL 158 (455)
Q Consensus 79 i~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l 158 (455)
+..+++|+||+|||+||++|++++.+. ++++.+||+|++ ++.+. ...+.++++++.+
T Consensus 184 i~~~~kvlvalSGGvDS~vll~ll~~~-----------------G~~v~av~v~~~---~~~~~---~~~~~v~~~a~~l 240 (413)
T 2c5s_A 184 VGVGGKVMVLLSGGIDSPVAAYLTMKR-----------------GVSVEAVHFHSP---PFTSE---RAKQKVIDLAQEL 240 (413)
T ss_dssp TTTTEEEEEECCSSSHHHHHHHHHHHB-----------------TEEEEEEEEECT---TTSCH---HHHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHHHc-----------------CCcEEEEEEeCC---CCCCH---HHHHHHHHHHHHH
Confidence 445689999999999999999999752 799999999974 23221 3445566666655
Q ss_pred CC--CCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHH
Q 012855 159 SP--PTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVI 236 (455)
Q Consensus 159 ~~--~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L 236 (455)
.. .+++++++++++.+ ..+....+ ...+|..|+.+++.++.++|+++|+++|++|||.+|+++++|
T Consensus 241 ~~~~ggi~~~vv~~~~~~-----------~~i~~~~~-~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ae~~l 308 (413)
T 2c5s_A 241 TKYCKRVTLHLVPFTEVQ-----------KTINKEIP-SSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTL 308 (413)
T ss_dssp GGGSSCEEEEEEECHHHH-----------HHHHHHSC-GGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCH
T ss_pred HHhCCCCeEEEEECcHHH-----------HHHHhcCC-cccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhHHHHH
Confidence 10 15899999876532 12233332 224788888888999999999999999999999999999988
Q ss_pred HHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 237 TATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 237 ~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
.++... +. ..++.++|||..++++||..|++..|++.
T Consensus 309 ~~l~~~-----~~-------~~~~~virPL~~l~K~eI~~~a~~~Gl~~ 345 (413)
T 2c5s_A 309 DSMHTI-----NE-------VTNYPVIRPLITMDKLEIIKIAEEIGTYD 345 (413)
T ss_dssp HHHHHH-----GG-------GCCSCEECTTTTCCHHHHHHHHHHTTCHH
T ss_pred HHHhcc-----cc-------cCCCEEEeccCCCCHHHHHHHHHHcCCCc
Confidence 887521 11 12467999999999999999999999743
No 12
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.75 E-value=1.3e-18 Score=163.79 Aligned_cols=167 Identities=15% Similarity=0.102 Sum_probs=109.7
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+++|+|+||||+||++|++++.+. ++++.++|||++. ... ...+.++.+++.+
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~-----------------~~~v~~~~~~~~~-~~~------~e~~~a~~~a~~l--- 55 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE-----------------FEEVETVTFHYNQ-RHS------QEVEVAKSIAEKL--- 55 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-----------------CSEEEEEEEESSC-TTC------HHHHHHHHHHHTT---
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc-----------------CCceEEEEEeCCC-CCH------HHHHHHHHHHHHh---
Confidence 468999999999999999999764 4689999999984 321 3467789999998
Q ss_pred CCcEEEEeccccccCCCCC-hhHHHHHHHhhcCCCCCHHHHHHHHHH-HHHHHHHHHcCCcEEEcccchhHHHHH-----
Q 012855 162 TKELHVIPIESIFCSNPCD-GRERFKKLVDSVSDATGKEDLLLQLRM-LSLQKFASENGYNRLLLGLCTSRIACH----- 234 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~-~~~~L~~ll~~~~s~tsred~~~~lRr-~lL~~~A~~~g~~~l~lGh~~ddlAet----- 234 (455)
|+++++++++......... ....+..-. ......++|..++.+++ .++.++|+++|+++|++||+.||+++.
T Consensus 56 gi~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~~~~~~~~~ 134 (219)
T 3bl5_A 56 GVKNHLLDMSLLNQLAPNALTRNDIEIEV-KDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGYPDCRD 134 (219)
T ss_dssp CCCEEEEECGGGGGGSTGGGC---------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CCGGGSH
T ss_pred CCCeEEEeChHHhhhcccccccccccccc-cccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEeccccccCCCCCCCH
Confidence 7999999987532110000 000011000 00112234556888888 788999999999999999999998762
Q ss_pred -HHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 235 -VITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 235 -~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
++..+..+.. .. ...++.++|||++++++||..|++.+|||.
T Consensus 135 ~~~~~l~~~~~------~~---~~~~~~ii~PL~~~~K~ei~~~a~~~glp~ 177 (219)
T 3bl5_A 135 EFVKSCNVTVN------LA---MEKPFVIHTPLMWLNKAETWKLADELGALD 177 (219)
T ss_dssp HHHHHHHHHHH------HH---HTSCCEEECTTTTCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH------hc---cCCCeEEEeccccCCHHHHHHHHHHcCCCc
Confidence 1112211000 00 013578999999999999999999999954
No 13
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.67 E-value=2.7e-16 Score=168.00 Aligned_cols=172 Identities=16% Similarity=0.172 Sum_probs=116.7
Q ss_pred HHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHH
Q 012855 70 RLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQ 149 (455)
Q Consensus 70 r~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~ 149 (455)
.+.|+++ .++++|+||+|||+||+|+++++++.. +.++.+||||+|. .... +..+
T Consensus 246 i~~ir~~---g~~~~vvvalSGGvDSsv~a~ll~~~~----------------G~~v~~v~vd~g~-~~~~-----e~~~ 300 (556)
T 3uow_A 246 LKNIEKY---KHDHYVIAAMSGGIDSTVAAAYTHKIF----------------KERFFGIFIDNGL-LRKN-----EAEN 300 (556)
T ss_dssp HHHHGGG---TTTCEEEEECCSSHHHHHHHHHHHHHH----------------GGGEEEEEEECSC-SCTT-----HHHH
T ss_pred eeeeeec---CCCceEEEEcccCCCHHHHHHHHHHHh----------------CCeEEEEEEecCC-CChH-----HHHH
Confidence 3445443 457899999999999999999997631 5688999999996 3211 2233
Q ss_pred HHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHHHHHHcCC----cEE
Q 012855 150 EIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATG---KEDLLLQLRMLSLQKFASENGY----NRL 222 (455)
Q Consensus 150 ~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~ts---red~~~~lRr~lL~~~A~~~g~----~~l 222 (455)
.++.+++.+ ||++++++++++.|. ..+...+. +..+++..+++++.++|+++|. ++|
T Consensus 301 ~~~~~~~~l--~gi~~~~vd~~~~f~--------------~~l~g~~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~l 364 (556)
T 3uow_A 301 VYTFLKSTF--PDMNITKIDASENFL--------------SNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFL 364 (556)
T ss_dssp HHHHHHHHC--TTSEEEEEECHHHHH--------------HHTTTCCCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred HHHHHHHhc--CCCCeEEeccHHHHH--------------HhhcCCCChHHHHHHHHHHHHHHHHHHHHHcCCccccccc
Confidence 345677776 369999999876441 11222222 2345566688899999999996 899
Q ss_pred EcccchhHHHHHHHHHHhccCCCCCCccccc--ccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 223 LLGLCTSRIACHVITATVKGRGYSLPADIQY--ADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 223 ~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~--~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
++||+.+|++++...+ |.-..+...... ......+++++||++++|+||..|++..|||.
T Consensus 365 a~Gt~y~D~ies~~~~---g~~~~iks~~n~~gl~~~~~~~li~PL~~l~K~EVr~la~~lGlp~ 426 (556)
T 3uow_A 365 LQGTLYPDIIESKCSK---NLSDTIKTHHNVGGLPKNLKFKLFEPFKYLFKDDVKTLSRELNLPE 426 (556)
T ss_dssp ECCCCHHHHHHHSCC----------------------CCCEEECTTTTCCHHHHHHHHHTTTCCH
T ss_pred ccCccChHHHhhcccc---cccceecccccccccccccccceEeecccCcHHHHHHHHHHcCCCH
Confidence 9999999999986532 100011111110 11223578999999999999999999999993
No 14
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.67 E-value=2.3e-16 Score=152.54 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=113.4
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+++|+||+|||+||+|||+++.++ ..++.|||||+|... .+..+.++++++++
T Consensus 45 ~~~v~va~SGG~DS~vLL~ll~~~-----------------~~~v~vv~idtg~~~-------~et~~~~~~~~~~~--- 97 (252)
T 2o8v_A 45 PGEYVLSSSFGIQAAVSLHLVNQI-----------------RPDIPVILTDTGYLF-------PETYRFIDELTDKL--- 97 (252)
T ss_dssp CSCEEEECCCSTTHHHHHHHHHHH-----------------STTCEEEECCCSCBC-------HHHHHHHHHHHHHT---
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHh-----------------CCCCeEEEecCCCCC-------HHHHHHHHHHHHHh---
Confidence 579999999999999999999876 235679999999521 24678899999998
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHh-hcCC-CCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVD-SVSD-ATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITAT 239 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~-~~~s-~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl 239 (455)
|++++++..+..+ .+.... .. .... ...++..|...+...|.++++++|++++++||+.||.+.
T Consensus 98 gi~~~v~~~~~~~-------~~~~~~-~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds~~------ 163 (252)
T 2o8v_A 98 KLNLKVYRATESA-------AWQEAR-YGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGS------ 163 (252)
T ss_dssp TCEEEECCCSSCH-------HHHHHH-TCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTTTC------
T ss_pred CCceEEEcCCCCH-------HHHHHH-cCCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEecccccccc------
Confidence 7899887643210 000000 00 0000 012355777778889999999999999999999998532
Q ss_pred hccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccccc
Q 012855 240 VKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELL 289 (455)
Q Consensus 240 ~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~ 289 (455)
|. .++.. +...++.+|+||.+.+++||..|++.++||+....
T Consensus 164 ---R~-~l~~~----~~~~~~~~i~PL~~wt~~dV~~y~~~~~lp~~~Ly 205 (252)
T 2o8v_A 164 ---RA-NLPVL----AIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLW 205 (252)
T ss_dssp ---CT-TSCSE----EESSSSEEECGGGSCCHHHHHHHHHHTTCCCCTTT
T ss_pred ---cc-cCcee----ecCCCeEEEechhhCCHHHHHHHHHHcCCCCChHH
Confidence 21 12211 12335789999999999999999999999987543
No 15
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.67 E-value=2.7e-16 Score=167.20 Aligned_cols=161 Identities=15% Similarity=0.197 Sum_probs=111.3
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHH-HHHhhCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKL-IVSNLSPP 161 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~-~~~~l~~~ 161 (455)
++|+||+|||+||+++++++++.. ++++.+||||+|. ... ...+.+.+ +++.+
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a~----------------G~~v~av~v~~g~-~~~------~e~~~~~~~la~~l--- 281 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRAI----------------GKNLTCVFVDNGL-LRL------NEAEQVLDMFGDHF--- 281 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH----------------GGGEEEEEEECSC-SCT------THHHHHHHHHTTTT---
T ss_pred cceEEEecCCCCHHHHHHHHHHHh----------------CCCEEEEEEeCCC-CCc------hHHHHHHHHHHHHh---
Confidence 699999999999999999997631 5678899999985 322 12344544 67776
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCH---HHHHHHHHHHHHHHHHHHc-CCcEEEcccchhHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGK---EDLLLQLRMLSLQKFASEN-GYNRLLLGLCTSRIACHVIT 237 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsr---ed~~~~lRr~lL~~~A~~~-g~~~l~lGh~~ddlAet~L~ 237 (455)
|++++++++++.| ++.+...+.+ +.+++..++++|.++|+++ |+++|++|||.+|++|++ .
T Consensus 282 gi~~~~v~~~~~f--------------~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~D~~E~~-~ 346 (525)
T 1gpm_A 282 GLNIVHVPAEDRF--------------LSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESA-A 346 (525)
T ss_dssp CCCEEEEECHHHH--------------HHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHHHHHHTT-C
T ss_pred CCcEEEEeccHHH--------------HHhhcCCCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCcchhhhc-C
Confidence 7999999886533 1112222333 4567778899999999999 999999999999999974 1
Q ss_pred HHhccCCCCCCcc--cccccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 238 ATVKGRGYSLPAD--IQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 238 nl~~GrG~sl~~~--~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
...+|.+. +... ++......+..++|||++++|+||..|++..|||.
T Consensus 347 ~~~~~s~~-iks~~~l~gl~~~~~~~~i~PL~~l~K~EVr~la~~lglp~ 395 (525)
T 1gpm_A 347 SATGKAHV-IKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPY 395 (525)
T ss_dssp -----------------------CCEEECTTTTCCHHHHHHHHHHTTCCH
T ss_pred cccccccc-ccccccccccccccCCcEEehhhcCCHHHHHHHHHHcCCCH
Confidence 01122111 1100 11111223468999999999999999999999995
No 16
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=99.66 E-value=1.5e-16 Score=159.23 Aligned_cols=184 Identities=15% Similarity=0.083 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCch
Q 012855 64 NLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSE 143 (455)
Q Consensus 64 ~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e 143 (455)
-..+.++.++..+ ++++||+|||+||+||||++.++.. ...+.+.|+|||+|. ..
T Consensus 34 ~a~~ilr~~~~~~------~~ivVa~SGGkDS~vLL~Ll~~~~~-------------~~~~~i~vv~vDtg~-~~----- 88 (325)
T 1zun_A 34 ESIHIIREVAAEF------DNPVMLYSIGKDSAVMLHLARKAFF-------------PGKLPFPVMHVDTRW-KF----- 88 (325)
T ss_dssp HHHHHHHHHHHHC------SSEEEECCSSHHHHHHHHHHHHHHT-------------TSCCSSCEEEECCSC-CC-----
T ss_pred HHHHHHHHHHHhC------CCEEEEEcChHHHHHHHHHHHHhcc-------------ccCCCEEEEEEECCC-CC-----
Confidence 3455566665543 5899999999999999999987632 013567799999995 31
Q ss_pred hHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEE
Q 012855 144 IDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLL 223 (455)
Q Consensus 144 ~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~ 223 (455)
.+..+.++++++++ |++++++..+..+... + ..+ ..++...|..++...|.++++++|+++++
T Consensus 89 -~et~~~v~~~~~~~---gi~l~v~~~~~~~~~G-------~-~~~-----~~~~~~cc~~~K~~pL~~~l~e~g~~~i~ 151 (325)
T 1zun_A 89 -QEMYRFRDQMVEEM---GLDLITHINPDGVAQG-------I-NPF-----THGSAKHTDIMKTEGLKQALDKHGFDAAF 151 (325)
T ss_dssp -HHHHHHHHHHHHTT---TCCEEEECC---------------------------CCHHHHHHTHHHHHHHHHHHTCSEEE
T ss_pred -HHHHHHHHHHHHHc---CCCEEEEeCchHHhcC-------C-Ccc-----ccChHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 24678899999998 7899888764321110 0 001 12344677788888999999999999999
Q ss_pred cccchhHHHHHHHHHHhccCCCCCCcccccc-c----------CCCCcceEecCccccHHHHHHHHHHcCCCccccc
Q 012855 224 LGLCTSRIACHVITATVKGRGYSLPADIQYA-D----------ARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELL 289 (455)
Q Consensus 224 lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~-~----------~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~ 289 (455)
+||+.||.+.+..+++..-||..-.|+.... + ...+..+|+||.+.+++||..|++.++||+....
T Consensus 152 tG~R~Des~~Ra~~~~~~~r~~~~~~d~~~~rp~l~~~~n~~~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp~~~LY 228 (325)
T 1zun_A 152 GGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLY 228 (325)
T ss_dssp CCCCTTSSGGGGGCCSEEEECTTCCBCGGGCCCCCSSCCCCCCCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCSCC
T ss_pred EecccchhhhhhcccceeccccccccCccccCcchhhhccccccCCCeEEEEchhhCCHHHHHHHHHHhCCCcchhh
Confidence 9999998775544444432222112221100 0 0113567999999999999999999999987543
No 17
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.65 E-value=5.6e-16 Score=149.54 Aligned_cols=148 Identities=15% Similarity=0.194 Sum_probs=111.3
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
.++|+||+|||+||+++++++.+.. ++++.+||++++. .+ . ...+.++++++.+
T Consensus 26 ~~~vvv~lSGGiDSsv~a~l~~~~~----------------g~~v~av~~~~~~-~~--~----~~~~~a~~~a~~l--- 79 (249)
T 3p52_A 26 SQGVVLGLSGGIDSALVATLCKRAL----------------KENVFALLMPTQI-SN--K----ANLEDALRLCADL--- 79 (249)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHH----------------TTSEEEEECCSCC-SS--C----HHHHHHHHHHHHH---
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHc----------------CCcEEEEEecCCC-CC--H----HHHHHHHHHHHHh---
Confidence 4699999999999999999997641 4678899999873 21 1 3567788999998
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVS--DATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITAT 239 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~--s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl 239 (455)
|++++++++++++ ..++..++ ...++|.+|+.+|+.+|..+|.++|+.+|.+||.. +.+
T Consensus 80 gi~~~~v~i~~~~-----------~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn~s-e~~------- 140 (249)
T 3p52_A 80 NLEYKIIEIQSIL-----------DAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSNKS-ELL------- 140 (249)
T ss_dssp TCEEEECCCHHHH-----------HHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHH-HHH-------
T ss_pred CCCEEEEECcHHH-----------HHHHHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCCHH-HHH-------
Confidence 7999999887543 23443332 22367999999999999999999999988887753 321
Q ss_pred hccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCC
Q 012855 240 VKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLK 284 (455)
Q Consensus 240 ~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~ 284 (455)
.| +... ++ ....+++||.+++|.||..|++..|+|
T Consensus 141 -~g--~~t~----~g---d~~~~i~PL~~l~K~eV~~la~~~gip 175 (249)
T 3p52_A 141 -LG--YGTI----YG---DLACAFNPIGSLYKSEIYALAKYLNLH 175 (249)
T ss_dssp -HT--CSCT----TT---TTCCSEETTTTSCHHHHHHHHHHTTCC
T ss_pred -cc--chhh----hc---cccCccccccCCcHHHHHHHHHHcCCc
Confidence 12 1111 11 123579999999999999999999999
No 18
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.65 E-value=7.1e-16 Score=149.40 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCch
Q 012855 64 NLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSE 143 (455)
Q Consensus 64 ~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e 143 (455)
.+..++...|.++ ..++|+|++|||+||+++++++.+... .+++.++|++++. . +
T Consensus 8 ~~~~~l~~~i~~~----~~~~vvv~lSGGiDSs~~~~l~~~~~g---------------~~~v~av~~~~~~-~----~- 62 (257)
T 2e18_A 8 KVIERILEFIREK----GNNGVVIGISGGVDSATVAYLATKALG---------------KEKVLGLIMPYFE-N----K- 62 (257)
T ss_dssp HHHHHHHHHHHHH----CTTCEEEECCSSHHHHHHHHHHHHHHC---------------GGGEEEEECCSSC-S----T-
T ss_pred HHHHHHHHHHHHh----CCCcEEEEecCCHHHHHHHHHHHHhcC---------------CCcEEEEEeCCCC-c----h-
Confidence 4556677777766 467899999999999999999876410 1578899999873 2 1
Q ss_pred hHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCC---CCCHHHHHHHHHHHHHHHHHHHcCCc
Q 012855 144 IDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSD---ATGKEDLLLQLRMLSLQKFASENGYN 220 (455)
Q Consensus 144 ~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s---~tsred~~~~lRr~lL~~~A~~~g~~ 220 (455)
..+.++++++.+ |+++++++++..+ ..+...+.. ....|.++..+|+.++..+|.++|+.
T Consensus 63 ---~~~~a~~~a~~l---gi~~~~i~i~~~~-----------~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~g~~ 125 (257)
T 2e18_A 63 ---DVEDAKLVAEKL---GIGYKVINIKPIV-----------DSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRI 125 (257)
T ss_dssp ---HHHHHHHHHHHH---TCEEEECCCHHHH-----------HHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred ---HHHHHHHHHHHh---CCCEEEEEChHHH-----------HHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCE
Confidence 456788899998 7899998876532 223333332 12457777789999999999999999
Q ss_pred EEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 221 RLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 221 ~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
+|++||+.++. +|+... + ..+..+++||.++++.||..|++..|+|.
T Consensus 126 vl~tg~~~e~~-----------~Gy~t~----~---g~~~~~i~Pl~~l~K~ev~~la~~~gip~ 172 (257)
T 2e18_A 126 VLGTSNRSEFL-----------TGYFTK----W---GDGASDYAPIINLYKTEVWEIAKRIGVPE 172 (257)
T ss_dssp EECCCCHHHHH-----------HTCSCT----T---STTCSSBCTTTTSCHHHHHHHHHHHTCCH
T ss_pred EEEcCchhHHh-----------cCCeec----c---CCCccCEeecCCCcHHHHHHHHHHcCCCH
Confidence 99999987764 222111 1 12467899999999999999999999995
No 19
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.64 E-value=1.2e-15 Score=145.30 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=109.2
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
++|+|++|||+||+++|+++.+. ++++.+||+|+|. .. ....+.++.+++.+ |
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~-----------------~~~v~av~~~~g~-~~------~~e~~~a~~~a~~l---g 55 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD-----------------YDDVHCITFDYGQ-RH------RAEIEVAQELSQKL---G 55 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH-----------------CSEEEEEEEESSS-SC------HHHHHHHHHHHHHH---T
T ss_pred CCEEEEecCcHHHHHHHHHHHHc-----------------CCCEEEEEEECCC-CC------HHHHHHHHHHHHHh---C
Confidence 58999999999999999999753 4689999999984 32 13567889999998 7
Q ss_pred Cc-EEEEecc--ccccCCCCChhHHHHHH-Hhhc-------CCCCCHHHHHHHHHHHHH-HHHHHHcCCcEEEcccchhH
Q 012855 163 KE-LHVIPIE--SIFCSNPCDGRERFKKL-VDSV-------SDATGKEDLLLQLRMLSL-QKFASENGYNRLLLGLCTSR 230 (455)
Q Consensus 163 i~-~~iv~l~--~v~~~~~~~~~~~L~~l-l~~~-------~s~tsred~~~~lRr~lL-~~~A~~~g~~~l~lGh~~dd 230 (455)
++ +++++++ +.|.. ..|..- + .+ .+..+++..+|.+++..+ ..+|+++|+++|++|||.+|
T Consensus 56 i~~~~vi~~~~l~~~~~------~~l~~~~~-~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D 128 (232)
T 2pg3_A 56 AAAHKVLDVGLLNELAT------SSLTRDSI-PVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETD 128 (232)
T ss_dssp CSEEEEEECTHHHHTSH------HHHHHTTC-CCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCS
T ss_pred CCceEEEeChhHHHHhh------hhcccccc-cccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccc
Confidence 88 9999876 22210 001000 0 00 011223455677775555 88999999999999999999
Q ss_pred HHHHHHHHHhccCCCC---CCcccccccCCCCcceEecCccccHHHHHHHHHHcCC-Cc
Q 012855 231 IACHVITATVKGRGYS---LPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCL-KT 285 (455)
Q Consensus 231 lAet~L~nl~~GrG~s---l~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L-~~ 285 (455)
+++. -.+|+.. +.......+ ..++.++|||.++++.||..|++..|+ |+
T Consensus 129 ~~~~-----~~~r~~~~~~~~~~~~~~~-~~~~~i~~PL~~~~K~ei~~~a~~~gl~~~ 181 (232)
T 2pg3_A 129 FSGY-----PDCRDEFVKALNQAIVLGI-ARDIRFETPLMWLNKAETWALADYYQQLDT 181 (232)
T ss_dssp SSCC-----GGGSHHHHHHHHHHHHHHH-TSCCEEECTTTTCCHHHHHHHHHHTTCHHH
T ss_pred cCCC-----CCCCHHHHHHHHHHHHHhC-CCCeEEEEecCCCCHHHHHHHHHHcCCCcc
Confidence 8631 0011000 000000000 134789999999999999999999999 64
No 20
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=99.64 E-value=2.7e-15 Score=155.33 Aligned_cols=161 Identities=13% Similarity=0.015 Sum_probs=118.8
Q ss_pred CCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHh
Q 012855 78 LITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSN 157 (455)
Q Consensus 78 li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~ 157 (455)
.+.+++||+||+|||+||+++|++|.+. ++++.++|+|+|. .. . ++.+.++++|++
T Consensus 6 ~l~~~~KVvVA~SGGlDSSvll~~L~e~-----------------G~eViavtvd~Gq-~~-~-----~ele~a~~~A~~ 61 (455)
T 1k92_A 6 HLPVGQRIGIAFSGGLDTSAALLWMRQK-----------------GAVPYAYTANLGQ-PD-E-----EDYDAIPRRAME 61 (455)
T ss_dssp SCCTTSEEEEECCSSHHHHHHHHHHHHT-----------------TCEEEEEEEECCC-TT-C-----SCTTHHHHHHHH
T ss_pred hhcCCCeEEEEEcChHHHHHHHHHHHHc-----------------CCEEEEEEEEcCC-CC-H-----HHHHHHHHHHHH
Confidence 4678899999999999999999999752 6899999999984 21 1 245678999999
Q ss_pred hCCCCC-cEEEEeccccccCCCCChhHHHHHHHhh-cC----C---CCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccc-
Q 012855 158 LSPPTK-ELHVIPIESIFCSNPCDGRERFKKLVDS-VS----D---ATGKEDLLLQLRMLSLQKFASENGYNRLLLGLC- 227 (455)
Q Consensus 158 l~~~~i-~~~iv~l~~v~~~~~~~~~~~L~~ll~~-~~----s---~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~- 227 (455)
+ |+ +++++++.+.|.. +-+ ..+.. .. . --....+.|.++...+.++|++.|+++|++||+
T Consensus 62 l---Gi~~~~vvD~~eef~~------~v~-p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~ 131 (455)
T 1k92_A 62 Y---GAENARLIDCRKQLVA------EGI-AAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTY 131 (455)
T ss_dssp H---TCSEEEEEECHHHHHH------HHH-HHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCT
T ss_pred h---CCCeEEEEeChHHHHH------HhH-HHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 8 68 8999998765421 111 12221 00 0 112356778888999999999999999999996
Q ss_pred -hhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCcc-------ccHHHHHHHHHHcCCCccc
Q 012855 228 -TSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRD-------CLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 228 -~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrd-------l~~kEI~~Y~~~~~L~~~~ 287 (455)
.+|++..-+. + . .+ ..++++|.|+++ ++++||..|++.+|||+..
T Consensus 132 kgnDq~rf~~~-~-~----al---------~p~l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~ 184 (455)
T 1k92_A 132 KGNDIERFYRY-G-L----LT---------NAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKM 184 (455)
T ss_dssp TSSHHHHHHHH-H-H----HH---------CTTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCCC
T ss_pred CCCCHHHHHHH-H-H----hc---------CCCCEEECeeccccccccCCCHHHHHHHHHHcCCCccc
Confidence 5788742221 1 0 01 113789999998 7999999999999999874
No 21
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.62 E-value=6.7e-15 Score=151.11 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=112.4
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
+||+||+|||+||++||++|.+.. ++++.++|||+|. + +..+.++++|+++ |
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~----------------g~~V~av~vd~g~--~-------~e~e~a~~~A~~l---G 52 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY----------------RAEVIAFTADIGQ--G-------EEVEEAREKALRT---G 52 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH----------------TCEEEEEEEESSC--S-------SCHHHHHHHHHHH---T
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh----------------CCcEEEEEEeCCC--H-------HHHHHHHHHHHHh---C
Confidence 489999999999999999997531 5789999999984 1 2467789999998 6
Q ss_pred C-cEEEEeccccccCCCCChhHHHHHHHhh--cCCC-CC-HHHHHHHHHHHHHHHHHHHcCCcEEEcccchh--HHHHHH
Q 012855 163 K-ELHVIPIESIFCSNPCDGRERFKKLVDS--VSDA-TG-KEDLLLQLRMLSLQKFASENGYNRLLLGLCTS--RIACHV 235 (455)
Q Consensus 163 i-~~~iv~l~~v~~~~~~~~~~~L~~ll~~--~~s~-ts-red~~~~lRr~lL~~~A~~~g~~~l~lGh~~d--dlAet~ 235 (455)
+ +++++++.+.|... -....+.. .... -. -...+|.+++..|.++|+++|+++|++||+.+ |+++.-
T Consensus 53 i~~~~vvd~~~ef~~~------~~~~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d~nDq~~f~ 126 (400)
T 1kor_A 53 ASKAIALDLKEEFVRD------FVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFE 126 (400)
T ss_dssp CSEEEEEECHHHHHHH------THHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHH
T ss_pred CCeEEEEeCcHHHHHH------hhHHHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCCcccHHHHH
Confidence 8 79988886433100 00111211 0000 00 01247778889999999999999999999997 998853
Q ss_pred HHHHhccCCCCCCcccccccCCCCcceEecCccc---cHHHHHHHHHHcCCCccc
Q 012855 236 ITATVKGRGYSLPADIQYADARWEIPVVLPLRDC---LAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 236 L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl---~~kEI~~Y~~~~~L~~~~ 287 (455)
+. +. .+ ..++.+|+||+++ +++||..|++.+|||+..
T Consensus 127 ~g-~~-----~l---------~p~l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~ 166 (400)
T 1kor_A 127 LT-AY-----AL---------KPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPV 166 (400)
T ss_dssp HH-HH-----HH---------CTTCEEECGGGTCCCCSHHHHHHHHHHTTCCCC-
T ss_pred HH-HH-----hc---------CCCCEEEEeecccccCCHHHHHHHHHHcCCCccc
Confidence 21 10 00 1135789999999 999999999999999884
No 22
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.59 E-value=6.5e-15 Score=143.55 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=112.0
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCC
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSP 160 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~ 160 (455)
..++|+||+|||+||+++++++.+.. ++++.++|++++. . + ....+.++.+++.+
T Consensus 24 ~~~~vvv~lSGGiDSsv~~~l~~~~~----------------~~~v~av~~~~~~-~--~----~~e~~~a~~~a~~l-- 78 (268)
T 1xng_A 24 GFKKVVYGLSGGLDSAVVGVLCQKVF----------------KENAHALLMPSSV-S--M----PENKTDALNLCEKF-- 78 (268)
T ss_dssp TCCCEEEECCSSHHHHHHHHHHHHHH----------------GGGEEEEECCCSS-S--C----HHHHHHHHHHHHHH--
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHhC----------------CCCEEEEEeCCCC-C--C----HHHHHHHHHHHHHc--
Confidence 45689999999999999999987641 2578899999873 2 1 24567889999998
Q ss_pred CCCcEEEEeccccccCCCCChhHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHH
Q 012855 161 PTKELHVIPIESIFCSNPCDGRERFKKLVDSVSD--ATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITA 238 (455)
Q Consensus 161 ~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s--~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~n 238 (455)
|+++++++++..+ ..++..+.. ....|.+++.+|+.+|..+|+++|+.+|.+||.. |++
T Consensus 79 -gi~~~~i~i~~~~-----------~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~~~----E~~--- 139 (268)
T 1xng_A 79 -SIPYTEYSIAPYD-----------AIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKS----ERM--- 139 (268)
T ss_dssp -TCCEEECCCHHHH-----------HHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHH----HHH---
T ss_pred -CCCEEEEeChHHH-----------HHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCcHH----HHh---
Confidence 7899998876532 233443332 2346788889999999999999999999999842 322
Q ss_pred HhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 239 TVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 239 l~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
. |+... + .....+++||.++++.||..|++..|+|.
T Consensus 140 --~--Gy~t~----~---gd~~~~i~PL~~l~K~ev~~la~~~gip~ 175 (268)
T 1xng_A 140 --L--GYGTL----F---GDLACAINPIGELFKTEVYELARRLNIPK 175 (268)
T ss_dssp --H--TCSCT----T---TTTCCSEETTTTSCHHHHHHHHHHTTCCH
T ss_pred --c--Ccccc----c---CCCCeeEEecCCCCHHHHHHHHHHcCCcH
Confidence 1 22111 1 12357899999999999999999999994
No 23
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.4e-15 Score=145.09 Aligned_cols=174 Identities=12% Similarity=0.134 Sum_probs=118.4
Q ss_pred HHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHH
Q 012855 67 GKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDN 146 (455)
Q Consensus 67 ~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~ 146 (455)
+.++.++..+ ++|+|++|||+||+||||++.++.. . ..++.|+|||+|... .+
T Consensus 32 ~~l~~a~~~~------~~v~va~SGGkDS~vLL~ll~~~~~-------------~-~~~i~vv~iDtg~~~-------~e 84 (261)
T 2oq2_A 32 EIIAWSIVTF------PHLFQTTAFGLTGLVTIDMLSKLSE-------------K-YYMPELLFIDTLHHF-------PQ 84 (261)
T ss_dssp HHHHHHHHHC------SSEEEECCCCHHHHHHHHHHHHHTT-------------T-SCCCEEEEECCSCBC-------HH
T ss_pred HHHHHHHHHC------CCEEEEecCCHHHHHHHHHHHHhCc-------------c-CCCeeEEEecCCCCC-------HH
Confidence 3455555543 2799999999999999999987621 0 246789999999522 24
Q ss_pred HHHHHHHHHHhhCCCCC----cEEEEeccccccCCCCChhHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHHHHHHcCCcE
Q 012855 147 AIQEIKLIVSNLSPPTK----ELHVIPIESIFCSNPCDGRERFKKLVD-SVSDATGKEDLLLQLRMLSLQKFASENGYNR 221 (455)
Q Consensus 147 ~~~~v~~~~~~l~~~~i----~~~iv~l~~v~~~~~~~~~~~L~~ll~-~~~s~tsred~~~~lRr~lL~~~A~~~g~~~ 221 (455)
..+.++++++++ |+ +++++..+.. .....+..... .+ -..++...|...+...|.++++++|+++
T Consensus 85 t~~~v~~~~~~~---gl~~~~~l~v~~~~~~------~~~~~~~~~~G~~~-~~~~~~~cc~~~K~~pl~~~l~~~g~~~ 154 (261)
T 2oq2_A 85 TLTLKNEIEKKY---YQPKNQTIHVYKPDGC------ESEADFASKYGDFL-WEKDDDKYDYLAKVEPAHRAYKELHISA 154 (261)
T ss_dssp HHHHHHHHHHHH---TGGGTCCCEEECSTTC------SSHHHHHHHHCTTH-HHHCHHHHHHHHTHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHh---CCCCCCCeEEEecCCc------cCHHHHHHHhCCCc-cccChHHHHHHHhHHHHHHHHHHcCCCE
Confidence 678899999998 67 8887754310 00001111000 00 0123566777778888999999999999
Q ss_pred EEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccccc
Q 012855 222 LLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELL 289 (455)
Q Consensus 222 l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~ 289 (455)
+++||+.||... |. .++.. . .+...++..|+||.+.+++||..|++.++||+....
T Consensus 155 ~~tG~R~dds~~---------R~-~~~~~-~-~~~~~~~~ki~PL~~wt~~dV~~Yi~~~~lp~~pLy 210 (261)
T 2oq2_A 155 VFTGRRKSQGSA---------RS-QLSII-E-IDELNGILKINPLINWTFEQVKQYIDANNVPYNELL 210 (261)
T ss_dssp EECCCCGGGCGG---------GG-GCCSE-E-EETTTTEEEECTTTTCCHHHHHHHHHHHTCCCCGGG
T ss_pred EEEeccccchHH---------Hc-cCCce-e-ecCCCCeEEEechHhCCHHHHHHHHHHcCCCCCchh
Confidence 999999999532 21 12211 1 111235678999999999999999999999987643
No 24
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=149.24 Aligned_cols=156 Identities=14% Similarity=0.137 Sum_probs=112.2
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
+++|+||+|||+||++++++|.+. ++++.++|+|+|. . +..+.++++|+++
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~-----------------G~eV~av~vd~g~-~--------~e~e~a~~~A~~l--- 55 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ-----------------GYDVIAYLANIGQ-K--------EDFEEARKKALKL--- 55 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT-----------------TEEEEEEEEESSC-C--------CCHHHHHHHHHHH---
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc-----------------CCEEEEEEEECCc-H--------HHHHHHHHHHHHh---
Confidence 569999999999999999999752 6899999999984 2 1356789999998
Q ss_pred CCc-EEEEeccccccCCCCChhHHHHHHHhhcC--CCC--CHHHHHHHHHHHHHHHHHHHcCCcEEEcccch--hHHHHH
Q 012855 162 TKE-LHVIPIESIFCSNPCDGRERFKKLVDSVS--DAT--GKEDLLLQLRMLSLQKFASENGYNRLLLGLCT--SRIACH 234 (455)
Q Consensus 162 ~i~-~~iv~l~~v~~~~~~~~~~~L~~ll~~~~--s~t--sred~~~~lRr~lL~~~A~~~g~~~l~lGh~~--ddlAet 234 (455)
|++ ++++++.+.|... -+...+..-. ... ....+.|.+++..+.++|+++|+++|++|||. +|+++.
T Consensus 56 Gi~~~~vvd~~~ef~~~------~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~~nDq~rf 129 (413)
T 2nz2_A 56 GAKKVFIEDVSREFVEE------FIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRF 129 (413)
T ss_dssp TCSEEEEEECHHHHHHH------THHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHH
T ss_pred CCCEEEEEeChHHHHHH------HHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCcccchHHH
Confidence 687 8888876443210 0111121100 000 01123567788899999999999999999999 898874
Q ss_pred HHHHHhccCCCCCCcccccccCCCCcceEecCc------cc-cHHHHHHHHHHcCCCccc
Q 012855 235 VITATVKGRGYSLPADIQYADARWEIPVVLPLR------DC-LAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 235 ~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLr------dl-~~kEI~~Y~~~~~L~~~~ 287 (455)
-+...+ + ..++++++||+ ++ +++||..|++.+|||+..
T Consensus 130 ~lg~~~------l---------~p~l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~~~ 174 (413)
T 2nz2_A 130 ELSCYS------L---------APQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPV 174 (413)
T ss_dssp HHHHHH------H---------CTTCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCCS
T ss_pred HHHHHh------c---------CCCCceeccccchhhhccCCCHHHHHHHHHHcCCCeec
Confidence 332110 1 11368999999 88 999999999999999974
No 25
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.57 E-value=1.8e-14 Score=138.97 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=105.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
.++|+||+|||+||+++++++.+. ..+..+||++++. . + +.+.+.++++++.+
T Consensus 29 ~~~vvv~lSGGiDSsv~a~l~~~~-----------------~~~~~av~~~~~~-~--~----~~~~~~a~~~a~~l--- 81 (249)
T 3fiu_A 29 AEGFVIGLSGGIDSAVAASLAVKT-----------------GLPTTALILPSDN-N--Q----HQDMQDALELIEML--- 81 (249)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHT-----------------TSCEEEEECCCTT-S--C----HHHHHHHHHHHHHH---
T ss_pred CCCEEEEecCcHHHHHHHHHHHHh-----------------CCCCEEEEecCCC-C--C----HHHHHHHHHHHHHh---
Confidence 469999999999999999998753 1233389998762 1 1 24567889999999
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhc----CCCCCHHHHH-----HHHHHHHHHHHHHHcCCcEEEcccchhHHH
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSV----SDATGKEDLL-----LQLRMLSLQKFASENGYNRLLLGLCTSRIA 232 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~----~s~tsred~~-----~~lRr~lL~~~A~~~g~~~l~lGh~~ddlA 232 (455)
|++++++++++.|. .+.+.+ .....+|++| +.+|+.+|..+|.++|+.+|.|||..
T Consensus 82 gi~~~~v~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn~s---- 146 (249)
T 3fiu_A 82 NIEHYTISIQPAYE-----------AFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDNAC---- 146 (249)
T ss_dssp TCEEEECCCHHHHH-----------HHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCHH----
T ss_pred CCCEEEEEChHHHH-----------HHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCCHH----
Confidence 79999999876542 222222 1123456777 88999999999999999999999643
Q ss_pred HHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCC
Q 012855 233 CHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLK 284 (455)
Q Consensus 233 et~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~ 284 (455)
|+.+ |+... ++ .+..+++||.++++.||..+++..|+|
T Consensus 147 E~~~-------G~~t~----~g---d~~~~i~PL~~l~K~eVr~lA~~lglp 184 (249)
T 3fiu_A 147 EWYM-------GYFTK----FG---DGAADILPLVNLKKSQVFELGKYLDVP 184 (249)
T ss_dssp HHHH-------TCSCT----TT---TTCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred HHhc-------Cchhc----cC---CCCcceeecccCcHHHHHHHHHHcCCc
Confidence 2221 22111 11 124589999999999999999999999
No 26
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=157.57 Aligned_cols=177 Identities=17% Similarity=0.129 Sum_probs=117.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCc-eEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPV-FGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSP 160 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~-f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~ 160 (455)
+++|+||+|||+||+++++++++. .+ +++.+||||+|. ... ...+.++++++++
T Consensus 240 ~~~vvv~lSGGvDSsVla~Ll~~a----------------lG~~~V~aV~vd~g~-~~~------~e~e~a~~~a~~l-- 294 (697)
T 2vxo_A 240 TSKVLVLLSGGVDSTVCTALLNRA----------------LNQEQVIAVHIDNGF-MRK------RESQSVEEALKKL-- 294 (697)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHH----------------SCGGGEEEEEEECSC-CCS------STTHHHHHHHHHT--
T ss_pred ccceEEEccCchHHHHHHHHHHHh----------------cCCceEEEEEecccc-CCc------chHHHHHHHHHHh--
Confidence 479999999999999999999753 14 789999999995 322 1346678888888
Q ss_pred CCCcEEEEeccccccCCCCCh--hHHHHHHHh----hcCCCCCHHHHHHH----HHHHHHHHHHHHcCCc----EEEccc
Q 012855 161 PTKELHVIPIESIFCSNPCDG--RERFKKLVD----SVSDATGKEDLLLQ----LRMLSLQKFASENGYN----RLLLGL 226 (455)
Q Consensus 161 ~~i~~~iv~l~~v~~~~~~~~--~~~L~~ll~----~~~s~tsred~~~~----lRr~lL~~~A~~~g~~----~l~lGh 226 (455)
|++++++++++.|......- ...-..+.. .+...+. +..-|. ++.+++..+|+++|++ +|++||
T Consensus 295 -GI~~~vvdi~~~f~~~~~~l~~~~~~~~Y~~g~~~~l~~v~~-~~~kR~iig~~~~~v~~~~A~~~g~~~~~~~LatG~ 372 (697)
T 2vxo_A 295 -GIQVKVINAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTS-PEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGT 372 (697)
T ss_dssp -TCCEEEEECHHHHHTCCCBCC----------CBCCCGGGCCC-HHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEECCC
T ss_pred -CCcEEEecchHHHHhhhhhhcccccccchhcccCcCcccccC-HHHHHhHHHHHHHHHHHHHHHHcCCCcccEEEEEec
Confidence 79999999876553210000 000000000 0001111 222333 4566677888999998 999999
Q ss_pred chhHHHHHHHHHHhccCCCCCCc---ccccccC-CCCcceEecCccccHHHHHHHHHHcCCCcc
Q 012855 227 CTSRIACHVITATVKGRGYSLPA---DIQYADA-RWEIPVVLPLRDCLAQELNMLCQLDCLKTV 286 (455)
Q Consensus 227 ~~ddlAet~L~nl~~GrG~sl~~---~~~~~~~-~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~ 286 (455)
+.+|++|+++..+.+|.+. +.. ..++... .....+++||++++|+||..|++..|||+.
T Consensus 373 ~~~D~iEs~~~~l~~g~~~-iks~~nv~g~~~~~~~~~~~i~PL~~L~K~EVr~la~~lGlP~~ 435 (697)
T 2vxo_A 373 LRPDLIESASLVASGKAEL-IKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGLPEE 435 (697)
T ss_dssp SSCCSBCCHHHHHHSCCCG-GGSCCSSCHHHHHHHHTTCEECGGGGSCHHHHHHHHHHTTCCHH
T ss_pred cChhhhhhhhhhhhcCccc-cccccccchhhHHhccCCEEEEecccCCHHHHHHHHHHcCCCcc
Confidence 9999999988766666432 111 1111110 123679999999999999999999999973
No 27
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=99.47 E-value=1.1e-13 Score=135.36 Aligned_cols=170 Identities=14% Similarity=0.118 Sum_probs=113.1
Q ss_pred HHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhH
Q 012855 66 FGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEID 145 (455)
Q Consensus 66 ~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~ 145 (455)
...++.++..+ |++|+||+| |+||+||||++.++ ++++.|+|||+|. .. .
T Consensus 43 ~~~l~~a~~~~-----g~~i~Va~S-GkDS~vLL~Ll~~~-----------------~~~i~vv~iDtg~-~~------~ 92 (275)
T 2goy_A 43 QDILKAAFEHF-----GDELWISFS-GAEDVVLVDMAWKL-----------------NRNVKVFSLDTGR-LH------P 92 (275)
T ss_dssp HHHHHHHHHHH-----STTEEEECC-SSTTHHHHHHHHHH-----------------CTTCCEEEECCSC-CC------H
T ss_pred HHHHHHHHHHc-----CCCEEEEee-cHHHHHHHHHHHHh-----------------CCCceEEEEeCCC-CC------H
Confidence 34455555543 578999999 99999999999875 2456799999995 21 2
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCC----CCCHHHHHHHHHHHHHHHHHHHcCCcE
Q 012855 146 NAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSD----ATGKEDLLLQLRMLSLQKFASENGYNR 221 (455)
Q Consensus 146 ~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s----~tsred~~~~lRr~lL~~~A~~~g~~~ 221 (455)
+..+.++++++++ |++++++..+.. .+.++...... ...+...|+..+...|.++.+ +++.
T Consensus 93 et~~~v~~~~~~~---gi~l~v~~~~~~----------~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~r~l~--~~~~ 157 (275)
T 2goy_A 93 ETYRFIDQVREHY---GIAIDVLSPDPR----------LLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLA--GVRA 157 (275)
T ss_dssp HHHHHHHHHHHHH---TCCCEEECCCHH----------HHHHHHHHHCSCHHHHHCTHHHHHHHTHHHHHHHHH--TCSE
T ss_pred HHHHHHHHHHHHH---CCeEEEEeCCcc----------CHHHHHHHhCCCCccccCHHHHHHHHHHHHHHHHHH--hcCc
Confidence 4678899999998 688887654310 01111110000 012456777777777877766 5679
Q ss_pred EEcccchhHHHHHHHHHHhccCCCCCCcccc---cccCCCCcceEecCccccHHHHHHHHHHcCCCccccc
Q 012855 222 LLLGLCTSRIACHVITATVKGRGYSLPADIQ---YADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELL 289 (455)
Q Consensus 222 l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~---~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~ 289 (455)
+++||+.||.. ..|.. ++.... +.....++.+|+||.+.+++||..|++.++||+....
T Consensus 158 ~itG~r~dds~--------~~R~~-~~~~~~d~~~~~~~~g~~~i~PL~~wt~~dV~~Yi~~~~lp~~~Ly 219 (275)
T 2goy_A 158 WATGQRRDQSP--------GTRSQ-VAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLH 219 (275)
T ss_dssp EECCCCGGGTT--------SCSCC-CCSEEECTTTCCSSSCCEEECTTTTCCHHHHHHHHHHTTCCCCGGG
T ss_pred hhcCchhhhhh--------hhhhh-CcccccccccccCCCCeEEEechHhCCHHHHHHHHHHhCCCCChHH
Confidence 99999999952 12211 111110 0001235778999999999999999999999987643
No 28
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.2e-12 Score=129.94 Aligned_cols=195 Identities=13% Similarity=0.131 Sum_probs=117.8
Q ss_pred ccccCCCCCceecCCCCCCcHHHHHHHHHHHHHHHHh-----hccCCCC-CCEEEEEecCCccHHHHHHHHHHHHHHH--
Q 012855 38 CVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVA-----SNALITP-ADNVLVAFSGGPSSRVALQFVHELQQRA-- 109 (455)
Q Consensus 38 C~kCk~~~av~~~r~~~~~C~~CF~~~i~~Kfr~~i~-----~~~li~~-g~kVLValSGG~dS~vLL~lL~~l~~~~-- 109 (455)
|.+|....++++..... .-....+..+++.++. ......+ +++|+|++|||+||+||||++.+.....
T Consensus 7 c~~c~~~~~~~~~~~~~----~~l~~~~~e~i~~~~~~il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~~~l~~~~~ 82 (306)
T 2wsi_A 7 AEMCYEITNSYLHIDQK----SQIIASTQEAIRLTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFF 82 (306)
T ss_dssp HHHHHHHHHHHHTCCCS----CHHHHHHHHHHHHHHHHHHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCch----HHHHHHHHHHHHHHHHHHHHHHHHHcccccCCEEEEecCCHHHHHHHHHHHHHHhhhcc
Confidence 99997545555443222 1225566666655443 1222322 4799999999999999999998753211
Q ss_pred ----hhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHH
Q 012855 110 ----QKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERF 185 (455)
Q Consensus 110 ----~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L 185 (455)
..+.+. +....+...+.+||||.|... .+..++++++++++ +++++++..+..+..
T Consensus 83 ~~~~~~~~~~-~~~~~~~~~i~vv~iDtg~~f-------pet~~fv~~~~~~y---gl~l~v~~~~~~~~~--------- 142 (306)
T 2wsi_A 83 IKAQNSQFDF-EFQSFPMQRLPTVFIDQEETF-------PTLENFVLETSERY---CLSLYESQRQSGASV--------- 142 (306)
T ss_dssp HHHHHC---------CCCCCEEEEECCCTTCC-------HHHHHHHHHHHHHT---TEEEEECCC-----C---------
T ss_pred cccccccccc-cccccCCCCeeEEEEeCCCCC-------HHHHHHHHHHHHHc---CCCEEEEeCCccccc---------
Confidence 000000 000112356789999998521 25778899999998 688877654321110
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH-cCCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCC-CcceE
Q 012855 186 KKLVDSVSDATGKEDLLLQLRMLSLQKFASE-NGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARW-EIPVV 263 (455)
Q Consensus 186 ~~ll~~~~s~tsred~~~~lRr~lL~~~A~~-~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~-~v~ii 263 (455)
+..+ .+.++++. -+..+|++|+..+|.. +|+ +.... ..+..| ++..|
T Consensus 143 -----------~l~~--------~~~~~~k~~p~~~aii~G~Rrdds~---------~r~--l~~~~-~~d~~~p~~~ri 191 (306)
T 2wsi_A 143 -----------NMAD--------AFRDFIKIYPETEAIVIGIRHTDPF---------GEA--LKPIQ-RTDSNWPDFMRL 191 (306)
T ss_dssp -----------CHHH--------HHHHHHHHCTTCCEEECCCCCCSSS---------CCC--CCSEE-ECCTTSCSCEEE
T ss_pred -----------cHHH--------HHHHHHhhCCCCcEEEEEEeccccc---------ccc--cCcee-ccCCCCCCcEEE
Confidence 1111 12233444 4788999999999943 332 22111 112223 46779
Q ss_pred ecCccccHHHHHHHHHHcCCCccc
Q 012855 264 LPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 264 RPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
+||.+.+++||-.|++.++||+..
T Consensus 192 ~PL~dWt~~DVw~Yi~~~~lpy~p 215 (306)
T 2wsi_A 192 QPLLHWDLTNIWSFLLYSNEPICG 215 (306)
T ss_dssp CTTTTCCHHHHHHHHHHHCCCBCH
T ss_pred eChHHCCHHHHHHHHHHcCCCCCh
Confidence 999999999999999999999854
No 29
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=99.39 E-value=5.2e-12 Score=129.48 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=108.9
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
.+||+||+|||.||++++.+|.+. +++++++++|.|. . +.++.+++.|.++
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke~-----------------G~eViavt~d~Gq-~--------~Ele~A~~vA~~l--- 64 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCEK-----------------GFDVIAYVANVGQ-K--------DDFVAIKEKALKT--- 64 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHT-----------------TCEEEEEEEESSC-C--------CCHHHHHHHHHHH---
T ss_pred cCCEEEEeCCcHHHHHHHHHHHHC-----------------CCeEEEEEEEcCC-H--------HHHHHHHHHHHHc---
Confidence 358999999999999999999753 7899999999873 1 2457789999998
Q ss_pred CC-cEEEEeccccccCCCCChhHHHHHHHhh--cCCC--CCHHHHHHHHHHHHHHHHHHHcCCcEEEcccch--hHHHHH
Q 012855 162 TK-ELHVIPIESIFCSNPCDGRERFKKLVDS--VSDA--TGKEDLLLQLRMLSLQKFASENGYNRLLLGLCT--SRIACH 234 (455)
Q Consensus 162 ~i-~~~iv~l~~v~~~~~~~~~~~L~~ll~~--~~s~--tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~--ddlAet 234 (455)
|+ +++++++.+.|..+ -+..++.. +... -....+++.+....+.++|+++|+++|++||+. +|+...
T Consensus 65 Gi~~~~VvDl~eef~~~------v~~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kgnDq~rf 138 (421)
T 1vl2_A 65 GASKVYVEDLRREFVTD------YIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRF 138 (421)
T ss_dssp TCSEEEEEECHHHHHHH------THHHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHH
T ss_pred CCceEEEEecHHHHHHh------hhhHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeCCCChHHH
Confidence 68 89999987655210 01122221 0000 112334666666778999999999999999997 465432
Q ss_pred HHHHHhccCCCCCCcccccccCCCCcceEecCcc-------ccHHHHHHHHHHcCCCccc
Q 012855 235 VITATVKGRGYSLPADIQYADARWEIPVVLPLRD-------CLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 235 ~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrd-------l~~kEI~~Y~~~~~L~~~~ 287 (455)
-+.-.+ + ..+++++.||++ ++++||..|++.+|||+..
T Consensus 139 ~~~~~a------l---------~p~~~IiaPl~d~~~l~~~lsK~Eir~~A~e~Glp~~~ 183 (421)
T 1vl2_A 139 ELTYAA------L---------NPNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKV 183 (421)
T ss_dssp HHHHHH------H---------CTTSEEECGGGCHHHHHHTC--CHHHHHHHHHTCCCCS
T ss_pred HHHHHh------c---------CCCCeEEcccCchhhccccCCHHHHHHHHHHcCCCccc
Confidence 111000 0 113689999999 7999999999999999864
No 30
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=99.30 E-value=2.6e-12 Score=127.60 Aligned_cols=125 Identities=14% Similarity=0.174 Sum_probs=92.8
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhh-
Q 012855 80 TPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNL- 158 (455)
Q Consensus 80 ~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l- 158 (455)
....|++|++|| .||+|+++++.+. ++++.++|++.+ . ...+.++++|+.+
T Consensus 177 g~~~kvlvllSG-vDS~vaa~ll~~~-----------------G~~v~~v~~~~~------~----~~~~~a~~~a~~l~ 228 (307)
T 1vbk_A 177 GTEGRMIGILHD-ELSALAIFLMMKR-----------------GVEVIPVYIGKD------D----KNLEKVRSLWNLLK 228 (307)
T ss_dssp TTTCEEEEECSS-HHHHHHHHHHHHB-----------------TCEEEEEEESCS------S----HHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeC-CcHHHHHHHHHhC-----------------CCeEEEEEEEEC------H----HHHHHHHHHHHHHh
Confidence 444699999999 9999999999753 899999999832 1 2455667777766
Q ss_pred ---CCCCCcEEEEe-ccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHH
Q 012855 159 ---SPPTKELHVIP-IESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACH 234 (455)
Q Consensus 159 ---~~~~i~~~iv~-l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet 234 (455)
...+++++++| +.+. + ++|.++|+++|++||+..|.+..
T Consensus 229 ~~~~~~~i~~~vv~~~~~~---------------~----------------------~~A~~~ga~~I~tG~~~~~~~~q 271 (307)
T 1vbk_A 229 RYSYGSKGFLVVAESFDRV---------------L----------------------KLIRDFGVKGVIKGLRPNDLNSE 271 (307)
T ss_dssp TTCTTSCCCCEEESSHHHH---------------H----------------------HHHHHHTCCEEECCCCGGGCCTT
T ss_pred hhccCCCCcEEEeCCCHHH---------------H----------------------HHHHHcCCCEEEECcccchhccc
Confidence 22378999888 6431 0 88999999999999999876532
Q ss_pred HHH-HHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCC
Q 012855 235 VIT-ATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCL 283 (455)
Q Consensus 235 ~L~-nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L 283 (455)
++. +.. +.....+++|||..+++.||..+|+..|+
T Consensus 272 t~~l~~~--------------~~~~~~~vl~PL~~~~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 272 VSEITED--------------FKMFPVPVYYPLIALPEEYIKSVKERLGL 307 (307)
T ss_dssp CHHHHHH--------------HHHCSSCEECHHHHSCHHHHHHHHHHHTC
T ss_pred cHHHhhh--------------ccCcCCeEEEccCCCCHHHHHHHHHHcCC
Confidence 222 111 00123679999999999999999988764
No 31
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.11 E-value=7.7e-10 Score=107.83 Aligned_cols=175 Identities=14% Similarity=0.126 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCC
Q 012855 61 FRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVP 140 (455)
Q Consensus 61 F~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s 140 (455)
++..+...++..+.++. ..+|+||+|||+||++++.++......--. ..+ .+++.+++++.+. .
T Consensus 21 ~i~~~~~~L~d~v~~~g----~~~vvvgLSGGvDSsv~a~La~~a~~~lg~------~~~--~~~v~av~~~~~~--~-- 84 (271)
T 1kqp_A 21 EIEDRVNFLKQYVKKTG----AKGFVLGISGGQDSTLAGRLAQLAVESIRE------EGG--DAQFIAVRLPHGT--Q-- 84 (271)
T ss_dssp HHHHHHHHHHHHHHHHT----CCEEEEECCSSHHHHHHHHHHHHHHHHHHH------TTC--CCEEEEEECCSSS--C--
T ss_pred HHHHHHHHHHHHHHHcC----CCCEEEECCCCHHHHHHHHHHHHHHHHhcc------cCC--CceEEEEEeCCCC--C--
Confidence 33444445555554432 248999999999999999988754210000 000 1678888887542 1
Q ss_pred CchhHHHHHHHHHHHHhhCCCCC-cEEEEeccccccCCCCChhHHHHHHHhhc-CCCCC---HHHHHHHHHHHHHHHHHH
Q 012855 141 SSEIDNAIQEIKLIVSNLSPPTK-ELHVIPIESIFCSNPCDGRERFKKLVDSV-SDATG---KEDLLLQLRMLSLQKFAS 215 (455)
Q Consensus 141 ~~e~~~~~~~v~~~~~~l~~~~i-~~~iv~l~~v~~~~~~~~~~~L~~ll~~~-~s~ts---red~~~~lRr~lL~~~A~ 215 (455)
...+..+.+++.+ |+ +++++++++.+.. +...+... ..... .+.+..++|..++..+|.
T Consensus 85 -----~d~~~A~~va~~l---gi~~~~~i~i~~~~~~--------~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~ 148 (271)
T 1kqp_A 85 -----QDEDDAQLALKFI---KPDKSWKFDIKSTVSA--------FSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGG 148 (271)
T ss_dssp -----TTHHHHHHHHHHH---CCSEEEECCCHHHHHH--------HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHhc---CCCeEEEeccHHHHHH--------HHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHH
Confidence 1345677888888 67 8899988765421 11111110 11112 334445688899999999
Q ss_pred HcCCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 216 ENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 216 ~~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
++|+..|.+||.... . .|+. +-++ .....+.||.+++|.||...++..|+|.
T Consensus 149 ~~g~lvl~tgn~~E~---------~--~Gy~----t~~g---d~~~~~~Pl~~l~K~eVr~la~~lglp~ 200 (271)
T 1kqp_A 149 QEGLLVLGTDHAAEA---------V--TGFF----TKYG---DGGADLLPLTGLTKRQGRTLLKELGAPE 200 (271)
T ss_dssp HHTCEEBCCCCHHHH---------T--TTCS----CTTT---TTCCSBCTTTTCCHHHHHHHHHHTTCCT
T ss_pred HCCCEEEECccHHHh---------c--cCCc----cccc---cccccccccccCCHHHHHHHHHHcCCCH
Confidence 999887777765432 1 2321 1111 1245799999999999999999999983
No 32
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.06 E-value=1.9e-09 Score=105.24 Aligned_cols=180 Identities=9% Similarity=0.014 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHH-hhccccccCCCCCceEEEEEEEeCCCCC
Q 012855 59 DCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRA-QKNFDASKDRSLPVFGVGVVFVDETAYY 137 (455)
Q Consensus 59 ~CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~-~~~~~~~~~r~~~~f~l~vv~VD~~~~~ 137 (455)
+-++..+...++..+.++. ...+|+||+|||+||++++.++......- .. .+..++++.+++++.+.
T Consensus 20 ~~~i~~~~~~L~~~l~~~g---~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~-------~~~~~~~v~av~~~~~~-- 87 (275)
T 1wxi_A 20 EEEIRRSVDFLKSYLQTYP---FIKSLVLGISGGQDSTLAGKLCQMAINELRLE-------TGNESLQFIAVRLPYGV-- 87 (275)
T ss_dssp HHHHHHHHHHHHHHHHHST---TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHH-------HCCTTCEEEEEECCSSS--
T ss_pred HHHHHHHHHHHHHHHHHcC---CCCCEEEECcCcHHHHHHHHHHHHHHHHhccc-------cccccceEEEEEeCCCC--
Confidence 4445555555566665432 13589999999999999998887542100 00 00013688888887542
Q ss_pred CCCCchhHHHHHHHHHHHHhhCCCCC-cEEEEeccccccCCCCChhHHHHHHHh-hcC-CCCCHHHHHHHHHHHHHHHHH
Q 012855 138 PVPSSEIDNAIQEIKLIVSNLSPPTK-ELHVIPIESIFCSNPCDGRERFKKLVD-SVS-DATGKEDLLLQLRMLSLQKFA 214 (455)
Q Consensus 138 ~~s~~e~~~~~~~v~~~~~~l~~~~i-~~~iv~l~~v~~~~~~~~~~~L~~ll~-~~~-s~tsred~~~~lRr~lL~~~A 214 (455)
. ...+..+.+++.+ |+ +++++++.+++.. -+..+-. ..+ .....|.+...+|..++..+|
T Consensus 88 ~-------~~~~dA~~va~~l---gi~~~~~i~i~~~~~~-------~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A 150 (275)
T 1wxi_A 88 Q-------ADEQDCQDAIAFI---QPDRVLTVNIKGAVLA-------SEQALREAGIELSDFVRGNEKARERMKAQYSIA 150 (275)
T ss_dssp C-------TTHHHHHHHHHHH---CCSEEEECCCHHHHHH-------HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred c-------cCHHHHHHHHHHc---CCCeEEEEecHHHHHH-------HHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHH
Confidence 1 1345678888888 68 8999988765421 1111111 010 111234444567888899999
Q ss_pred HHcCCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 215 SENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 215 ~~~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
.++|+..|.+||..+. . .|+. +-++ .....+-||.+++|.||...++..|+|.
T Consensus 151 ~~~g~lvlgTgn~~E~---------~--~Gy~----t~~g---d~~~~~~PL~~l~K~eVr~la~~lglp~ 203 (275)
T 1wxi_A 151 GMTSGVVVGTDHAAEA---------I--TGFF----TKYG---DGGTDINPLYRLNKRQGKQLLAALACPE 203 (275)
T ss_dssp HHTTEEEBCCCCHHHH---------T--TTCS----CTTT---TTCCSBCTTTTCCHHHHHHHHHHTTCCG
T ss_pred HHCCCEEEECccHHHH---------c--cCcc----cccC---CCccceeeccCCCHHHHHHHHHHhCCcH
Confidence 9999988888876543 1 2321 1111 1246799999999999999999999983
No 33
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.04 E-value=1.2e-09 Score=117.59 Aligned_cols=146 Identities=21% Similarity=0.259 Sum_probs=104.9
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCc-eEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPV-FGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSP 160 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~-f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~ 160 (455)
..+|+||+|||.||++++.++.+.. + .++..|+++.+. ++ +...+.++++++.+
T Consensus 326 ~~~vvvglSGGvDSsv~a~la~~al----------------G~~~v~~v~m~~~~----~~---~~~~~~A~~la~~l-- 380 (590)
T 3n05_A 326 FRSVLIGLSGGIDSALVAAIACDAL----------------GAQNVYGVSMPSKY----SS---DHSKGDAAELARRT-- 380 (590)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH----------------CGGGEEEEECCCSS----CC---HHHHHHHHHHHHHH--
T ss_pred CCcEEEEcCCCHHHHHHHHHHHHHh----------------CcccEEEEEECCCC----CC---HHHHHHHHHHHHHc--
Confidence 3589999999999999999887531 2 567889988642 11 24677889999998
Q ss_pred CCCcEEEEeccccccCCCCChhHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHH
Q 012855 161 PTKELHVIPIESIFCSNPCDGRERFKKLVDSVS-DATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITAT 239 (455)
Q Consensus 161 ~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~-s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl 239 (455)
|++++++++++.|. .++..+. .....+.+...+|..++..+|.++|+..|.+| |.++++
T Consensus 381 -gi~~~~i~i~~~~~-----------~~~~~l~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~------- 440 (590)
T 3n05_A 381 -GLNFRTVSIEPMFD-----------AYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELA------- 440 (590)
T ss_dssp -TCEEEECCSHHHHH-----------HHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHH-------
T ss_pred -CCcEEEEEChHHHH-----------HHHHHhcccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHh-------
Confidence 79999999876542 2332222 22234566677899999999999999999999 555543
Q ss_pred hccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcC
Q 012855 240 VKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDC 282 (455)
Q Consensus 240 ~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~ 282 (455)
. |+. +.+. .....+.||.+++|.||..+++..|
T Consensus 441 -~--Gy~----t~~g---d~~~~~~Pl~~l~K~eVr~la~~lg 473 (590)
T 3n05_A 441 -V--GYS----TLYG---DSVGAYGPIKDVYKTSIFRLAEWRN 473 (590)
T ss_dssp -H--TCC----CSSC---TTSCSBCTTTTSCHHHHHHHHHHHH
T ss_pred -c--Cch----hhcC---CCccceeecCCCcHHHHHHHHHHhC
Confidence 1 221 1111 1245789999999999999998876
No 34
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.02 E-value=2.7e-09 Score=104.39 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=99.3
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
.+|+||+|||.||++++.++......--. .+ ..++++++++..+. . ...+..++.++.++ .
T Consensus 47 ~~vvvglSGGiDSal~a~La~~A~daLG~-------~~-~~~~viav~~p~~~--~-------~~~~dA~~~a~~lg--~ 107 (285)
T 3dpi_A 47 RACVLGISGGIDSSTAGRLAQLAVERLRA-------SG-YDARFVAMRLPYGA--Q-------HDEADARRALAFVR--A 107 (285)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHHH-------TT-CCCEEEEEECCSCC------------CHHHHHHHHHHC--C
T ss_pred CcEEEEccCChhHHHHHHHHHHHHHHhcc-------cC-cccEEEEEEcCCCC--H-------HHHHHHHHHHHHcC--C
Confidence 58999999999999999887653211000 00 11366777765431 1 13345677788873 3
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHhhcC-----------CCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHH
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVDSVS-----------DATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRI 231 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~-----------s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddl 231 (455)
++++++++.++|.. +++.+. .....+.+..++|..+|..+|.++|+-.|-|||-.. +
T Consensus 108 i~~~~i~i~~~~~~-----------~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~sE-~ 175 (285)
T 3dpi_A 108 DETLTVDVKPAADA-----------MLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAAE-S 175 (285)
T ss_dssp SEEEECCCHHHHHH-----------HHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHH-H
T ss_pred CcEEEEEChHHHHH-----------HHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccHHh-h
Confidence 79999998876531 222221 012467888899999999999999985444444433 2
Q ss_pred HHHHHHHHh-ccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCc
Q 012855 232 ACHVITATV-KGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKT 285 (455)
Q Consensus 232 Aet~L~nl~-~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~ 285 (455)
+ +.... .|.| ...+.||.+++|.||...++..|+|.
T Consensus 176 ~---~Gy~T~~GD~---------------~~~~~Pl~~l~K~eV~~la~~lg~p~ 212 (285)
T 3dpi_A 176 V---MGFFTKFGDG---------------GADVLPLAGLTKRRVRALARMLGADE 212 (285)
T ss_dssp H---HHHHHCCCCC---------------CCSBCTTTTCCHHHHHHHHHHTTCCH
T ss_pred h---CCcccccCCC---------------ceeEeeecCCcHHHHHHHHHHcCCCH
Confidence 2 32222 2322 33689999999999999999999983
No 35
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=98.92 E-value=1.2e-08 Score=99.64 Aligned_cols=186 Identities=11% Similarity=0.046 Sum_probs=115.2
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCC
Q 012855 56 HCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETA 135 (455)
Q Consensus 56 ~C~~CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~ 135 (455)
+-.+-.++.+....+..+.++. -.+|+||+|||.||++++.++......--. .....++++.+|+++.+.
T Consensus 18 ~~~~~~i~~~v~~L~d~l~~~g----~~~vvvglSGGvDSal~a~l~~~A~~~Lg~------~~~~~~~~v~av~~p~~~ 87 (279)
T 3q4g_A 18 IDPQFEIERRVAFIKRKLTEAR----YKSLVLGISGGVDSTTCGRLAQLAVEELNQ------QHNTTEYQFIAVRLPYGE 87 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHT----CCEEEEECCSSHHHHHHHHHHHHHHHHHHH------HTTCSCCEEEEEECCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHcC----CCCEEEEccCCHHHHHHHHHHHHHHHHhCc------ccccCCceEEEEEecCCC
Confidence 3445555665556666665542 358999999999999999987653211000 001125788899988652
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhCCCCC-cEEEEeccccccCCCCChhHHHHHHHhhc-------CCCCCHHHHHHHHHH
Q 012855 136 YYPVPSSEIDNAIQEIKLIVSNLSPPTK-ELHVIPIESIFCSNPCDGRERFKKLVDSV-------SDATGKEDLLLQLRM 207 (455)
Q Consensus 136 ~~~~s~~e~~~~~~~v~~~~~~l~~~~i-~~~iv~l~~v~~~~~~~~~~~L~~ll~~~-------~s~tsred~~~~lRr 207 (455)
. ...+..+.+++.+ |+ +++++++++.|..- ....++.+.... ......|.+..++|.
T Consensus 88 --~-------~~~~~A~~~a~~l---gi~~~~~i~i~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~ 152 (279)
T 3q4g_A 88 --Q-------KDEDEAQLALSFI---RPTHSVSVNIKAGVDGL---HAASHHALANTGLIPSDPAKVDFIKGNVKARARM 152 (279)
T ss_dssp --C-------SCHHHHHHHHHHH---CCSEEEECCCHHHHHHH---HHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHH
T ss_pred --h-------HHHHHHHHHHHHh---CCCeEEEEECHHHHHHH---HHHHHHHhhhhcccccCCCcccchhhhHHHHHHH
Confidence 1 1245677888888 67 89999988765320 000001121111 111245788889999
Q ss_pred HHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCC
Q 012855 208 LSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLK 284 (455)
Q Consensus 208 ~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~ 284 (455)
.+|..+|.++|+-.|-||| .++++ + |+. +-++| +...+.||-+++|.||...++..|+|
T Consensus 153 ~~Ly~~A~~~g~lVlgTgn-~sE~~---~-------Gy~----TkyGD---~~~di~Pl~dl~Kt~Vr~LA~~lgiP 211 (279)
T 3q4g_A 153 VAQYEIAGYVGGLVLGTDH-SAENI---T-------GFY----TKFGD---GACDLAPLFGLNKRQVRLLAKTLGAP 211 (279)
T ss_dssp HHHHHHHHHHTEEEBCCCC-HHHHH---H-------TCS----CTTTT---TCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCEEecCcc-HHhhh---c-------cch----hhcCC---cccceeecCCCcHHHHHHHHHHhCCc
Confidence 9999999999974333333 33322 1 221 11122 13458999999999999999999998
No 36
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.59 E-value=3.9e-07 Score=98.80 Aligned_cols=168 Identities=9% Similarity=0.095 Sum_probs=100.2
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhcccccc-----CC----CCC---------------ceEEEEEEEeCCCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASK-----DR----SLP---------------VFGVGVVFVDETAYY 137 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~-----~r----~~~---------------~f~l~vv~VD~~~~~ 137 (455)
..+|+||+|||.||++++.++..+.+.+.+.....+ .+ ..+ +.-++.|++..-
T Consensus 303 ~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~m~~~--- 379 (634)
T 3ilv_A 303 SKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAYQSTR--- 379 (634)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHHHHHHEEEEEEECT---
T ss_pred CCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccchhHhhhheeeeeecCCC---
Confidence 358999999999999888875431111000000000 00 000 011667777632
Q ss_pred CCCCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcC-------CCCCHHHHHHHHHHHHH
Q 012855 138 PVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVS-------DATGKEDLLLQLRMLSL 210 (455)
Q Consensus 138 ~~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~-------s~tsred~~~~lRr~lL 210 (455)
.++. ...+..+++++.+ |++++++++.+.|.. .+..+-.... .....+.+...+|..+|
T Consensus 380 -~ss~---~~~~dA~~la~~L---Gi~~~~IdI~~~~~~-------~~~~~~~~~g~~p~~~~~~~~~~N~qaR~R~~~l 445 (634)
T 3ilv_A 380 -NSGD---ETYTSAKTLAESI---GATFYNWSVDEEIEQ-------YKATIENVIERPLTWEKDDITLQNIQARGRAPII 445 (634)
T ss_dssp -TCCS---HHHHHHHHHHHHH---TCEEEEEECHHHHHH-------HHHHHHHHTTSCCCTTTCHHHHHHHHHHTTHHHH
T ss_pred -CCCH---HHHHHHHHHHHHh---CCcEEEEccHHHHHH-------HHHHHHHhhCCCcccccCcchhhhhhHHHHHHHH
Confidence 1222 4567788888988 799999998876532 1222222110 01123566677888999
Q ss_pred HHHHHHcCCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHc----CCC
Q 012855 211 QKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLD----CLK 284 (455)
Q Consensus 211 ~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~----~L~ 284 (455)
..+|.++|+..|.+|| .+.++.|-+ +-+.|. ...+.||.+++|.||...++.. +||
T Consensus 446 ~~~A~~~g~lvlgTgn---------ksE~~~Gy~------T~ygD~---~~~~~Pl~~l~KteVr~la~~l~~~~glp 505 (634)
T 3ilv_A 446 WMLTNVKQALLITTSN---------RSEGDVGYA------TMDGDT---AGGIAPIAGVDKDFIRSWLRWAEKNRNQH 505 (634)
T ss_dssp HHHHHHHTCEEBCCCC---------HHHHHTTCS------CTTTTT---CSSBBTTTTSCHHHHHHHHHHHHHHSCCG
T ss_pred HHHHHhcCCEEeccCc---------hhhHhhCCc------cccCCc---ccCCcccCCCcHHHHHHHHHHHHHcCCCc
Confidence 9999999997777776 222233321 111111 2357899999999999999888 888
No 37
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=98.49 E-value=1.7e-06 Score=85.01 Aligned_cols=175 Identities=14% Similarity=0.174 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHh---hcc--CCCC-CCEEEEEecCCccHHHHHHHHHHHHHHHh------hccccccCCCCCceEEEEE
Q 012855 62 RSNLFGKFRLAVA---SNA--LITP-ADNVLVAFSGGPSSRVALQFVHELQQRAQ------KNFDASKDRSLPVFGVGVV 129 (455)
Q Consensus 62 ~~~i~~Kfr~~i~---~~~--li~~-g~kVLValSGG~dS~vLL~lL~~l~~~~~------~~~~~~~~r~~~~f~l~vv 129 (455)
++-+..+++.++. +.. -..+ ++++.|++|||+||+|||||+.+...... .+++.+ ....+...+-|+
T Consensus 32 ~~~~q~qir~S~~~iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~-~~~~p~~~ipvi 110 (308)
T 3fwk_A 32 IAQTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGK-FHRFPLTKLPTV 110 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE------------------EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccCCEEEEecCChhHHHHHHHHHHHhhhhccccccccccccc-ccccCCCCccEE
Confidence 3445666665553 111 1221 37899999999999999999987421100 000000 000112367799
Q ss_pred EEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 012855 130 FVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLS 209 (455)
Q Consensus 130 ~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~l 209 (455)
|||.|...+ +..+++.++.+++ |+.++++.-+ .+ . +..+.
T Consensus 111 fiDTG~~Fp-------ET~ef~d~~~~~y---gL~L~v~~p~--~~-------------------~-~~~~~-------- 150 (308)
T 3fwk_A 111 FIDHDDTFK-------TLENFIEETSLRY---SLSLYESDRD--KC-------------------E-TMAEA-------- 150 (308)
T ss_dssp ECCCTTCCH-------HHHHHHHHHHHHT---TEEEEECCTT--SC-------------------C-CHHHH--------
T ss_pred EEeCCCCCH-------HHHHHHHHHHHHh---CCcEEEeCCC--CC-------------------H-HHHHH--------
Confidence 999995332 5778888888888 6666544321 00 0 11111
Q ss_pred HHHHHHHc-CCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCC-CcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 210 LQKFASEN-GYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARW-EIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 210 L~~~A~~~-g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~-~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
+.++-+.. +++.+++|-=.++ . . | ..++... ..+..| ++..|.||.+-+..||-.|...++||+..
T Consensus 151 cc~~~K~~P~~~AwitG~RR~e-~-------~--R-a~l~~~e-~~d~~w~~~iKVnPL~dWT~~DVW~YI~~~~LPynp 218 (308)
T 3fwk_A 151 FETFLQVFPETKAIVIGIRHTD-P-------F--G-EHLKPIQ-KTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICE 218 (308)
T ss_dssp HHHHHHHCTTCCEEECCCCTTS-T-------T--C-TTCCSEE-ECCTTSCSCEEECTTTTCCHHHHHHHHHHHTCCCCG
T ss_pred HHHHHHhCCCCCEEEEEeecCC-c-------c--c-CCCCeee-ccCCCCCCeEEEechhhCCHHHHHHHHHHcCCCCCc
Confidence 22223334 6889999955552 1 0 1 1222211 112234 56788999999999999999999999876
Q ss_pred cc
Q 012855 288 LL 289 (455)
Q Consensus 288 ~~ 289 (455)
..
T Consensus 219 LY 220 (308)
T 3fwk_A 219 LY 220 (308)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 38
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.37 E-value=3.1e-06 Score=92.37 Aligned_cols=150 Identities=17% Similarity=0.100 Sum_probs=93.6
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPT 162 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~ 162 (455)
.+|+||+|||.||++++.++...... + +.+..++.+|+++... . + +...+.++++++.+ |
T Consensus 362 ~~vvvglSGGvDSsvaa~l~~~a~~~----l------g~~~~~v~~v~m~~~~-~--~----~~~~~~A~~la~~l---g 421 (680)
T 3sdb_A 362 PKVVIGVSGGLDSTHALIVATHAMDR----E------GRPRSDILAFALPGFA-T--G----EHTKNNAIKLARAL---G 421 (680)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH----T------TCCGGGEEEEECCC---------------CHHHHHHHHH---T
T ss_pred CcEEEEecCCccHHHHHHHHHHHHHH----h------CCCCceEEEEEECCCC-C--C----HHHHHHHHHHHHHc---C
Confidence 58999999999999877777643211 0 1123567888887431 1 1 13455678888888 7
Q ss_pred CcEEEEeccccccCCCCChhHHHHHHHhhcC---------CCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHH
Q 012855 163 KELHVIPIESIFCSNPCDGRERFKKLVDSVS---------DATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIAC 233 (455)
Q Consensus 163 i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~---------s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAe 233 (455)
++++++++++.|. .++..+. .....+.+...+|..+|..+|.+.|+-.|.+|| .+++
T Consensus 422 i~~~~i~i~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTgn-~sE~-- 487 (680)
T 3sdb_A 422 VTFSEIDIGDTAR-----------LMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGD-LSEL-- 487 (680)
T ss_dssp CEEEECCCHHHHH-----------HHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECCC-HHHH--
T ss_pred CCEEEEECHHHHH-----------HHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCCc-HHhH--
Confidence 9999999886542 2222221 122346677788999999999999985555554 2222
Q ss_pred HHHHHHhccCCCCCCccccc-ccCCCCcceEecCccccHHHHHHHHHHc
Q 012855 234 HVITATVKGRGYSLPADIQY-ADARWEIPVVLPLRDCLAQELNMLCQLD 281 (455)
Q Consensus 234 t~L~nl~~GrG~sl~~~~~~-~~~~~~v~iiRPLrdl~~kEI~~Y~~~~ 281 (455)
. .| +. +-+ +|. ...+-||.+++|.||...++..
T Consensus 488 -~-----~G--y~----T~~~gD~---~~~~~Pl~~l~K~eVr~lar~l 521 (680)
T 3sdb_A 488 -A-----LG--WS----TYGVGDQ---MSHYNVNAGVPKTLIQHLIRWV 521 (680)
T ss_dssp -H-----HT--CS----CCSSSTT---CCSEETTTTSCHHHHHHHHHHH
T ss_pred -h-----cC--ee----eccCCCc---cccccccCCCcHHHHHHHHHHH
Confidence 1 22 11 111 111 2337899999999999888766
No 39
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=98.14 E-value=1e-05 Score=76.92 Aligned_cols=139 Identities=19% Similarity=0.061 Sum_probs=85.6
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCC-CCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAY-YPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~-~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
-|++|++|||+||++.++++.+. ++++.+++...+.- ..+..+ ....+.++.+++.+
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~~-----------------G~eV~~L~~~~~~~~~s~~~h--~~~~e~a~~~A~~L--- 62 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIKN-----------------RFSVKFLVTMVSENEESYMYH--TINANLTDLQARAL--- 62 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHT-----------------TCEEEEEEEEECC----------CCSSSHHHHHHHHH---
T ss_pred CEEEEEecCcHHHHHHHHHHHHc-----------------CCeEEEEEEEcCCCCCccccC--CccHHHHHHHHHHc---
Confidence 38999999999999999988642 68887776554310 000000 01234577788888
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhc
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVK 241 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~ 241 (455)
|+|++++++....+ .-.+++. +..++.|.+.|++|+-..+---+-..+++.
T Consensus 63 GIpl~~v~~~g~~~--------------------~e~e~l~---------~~l~~~~i~~vv~Gdi~s~yqr~r~e~vc~ 113 (237)
T 3rjz_A 63 GIPLVKGFTQGEKE--------------------KEVEDLK---------RVLSGLKIQGIVAGALASKYQRKRIEKVAK 113 (237)
T ss_dssp TCCEEEEEC--------------------------CHHHHH---------HHHTTSCCSEEECC---CCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCch--------------------HHHHHHH---------HHHHhcCCcEEEECCcchHHHHHHHHHHHH
Confidence 79999998752100 0112222 222334999999998653332233344432
Q ss_pred cCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCccc
Q 012855 242 GRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVE 287 (455)
Q Consensus 242 GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~ 287 (455)
+.+++.+.||......|+..-.-..|+..+.
T Consensus 114 ---------------~~gl~~~~PLW~~d~~~Ll~e~i~~G~~aii 144 (237)
T 3rjz_A 114 ---------------ELGLEVYTPAWGRDAKEYMRELLNLGFKIMV 144 (237)
T ss_dssp ---------------HTTCEEECSSSSCCHHHHHHHHHHTTCEEEE
T ss_pred ---------------HcCCEEEccccCCCHHHHHHHHHHCCCEEEE
Confidence 2356789999999999998888888988764
No 40
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=97.88 E-value=0.00018 Score=76.68 Aligned_cols=143 Identities=13% Similarity=0.156 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce--EEEEEEEeCCCCCCCCC
Q 012855 64 NLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF--GVGVVFVDETAYYPVPS 141 (455)
Q Consensus 64 ~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f--~l~vv~VD~~~~~~~s~ 141 (455)
.+...+..++.+. +. ...+|.|.||||.||++++.++.+...+... .......| .+..+.|... + +
T Consensus 210 ~lr~~L~~aV~~r-l~-sdvpvgv~LSGGlDSS~iaala~~~~~~~~~-----~~~~~~a~~~~l~tfsig~~---~-~- 277 (553)
T 1ct9_A 210 ELRQALEDSVKSH-LM-SDVPYGVLLSGGLDSSIISAITKKYAARRVE-----DQERSEAWWPQLHSFAVGLP---G-S- 277 (553)
T ss_dssp HHHHHHHHHHHHH-TC-CSSCEEEECCSSHHHHHHHHHHHHHC---------------------CEEEEEEST---T-C-
T ss_pred HHHHHHHHHHHHH-hc-CCCceEEeCCCCccHHHHHHHHHHhhccccc-----cccccccccCceeEEEecCC---C-C-
Confidence 4555566666542 32 3458999999999999999999875321000 00000011 2455666432 1 1
Q ss_pred chhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcE
Q 012855 142 SEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNR 221 (455)
Q Consensus 142 ~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~ 221 (455)
.+.+.++..++.+ |+++|++.+... +..+.+.+++..+.+. ....+...+...++.+.|++.|++.
T Consensus 278 ----~E~~~A~~vA~~l---g~~h~~i~~~~~------~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~l~~~a~~~g~~v 343 (553)
T 1ct9_A 278 ----PDLKAAQEVANHL---GTVHHEIHFTVQ------EGLDAIRDVIYHIETY-DVTTIRASTPMYLMSRKIKAMGIKM 343 (553)
T ss_dssp ----HHHHHHHHHHHHH---TCEEEEEECCHH------HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ----cHHHHHHHHHHHh---CCCCEEEECCHH------HHHHHHHHHHHHhcCC-CcccchHHHHHHHHHHHHHHcCCeE
Confidence 2456678888888 689988876531 0112344444433322 1111212334567888899999999
Q ss_pred EEcccchhHHH
Q 012855 222 LLLGLCTSRIA 232 (455)
Q Consensus 222 l~lGh~~ddlA 232 (455)
|++||.+|++-
T Consensus 344 vLsG~GaDElf 354 (553)
T 1ct9_A 344 VLSGEGSDEVF 354 (553)
T ss_dssp EECCTTHHHHH
T ss_pred EEECCCchhcc
Confidence 99999999875
No 41
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=97.65 E-value=0.00038 Score=73.42 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCC
Q 012855 59 DCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYP 138 (455)
Q Consensus 59 ~CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~ 138 (455)
+-..+.+...++.++.+. +. ...+|.|.||||.||++++.++.+.. -.+..++|... .
T Consensus 220 ~~~~~~l~~~L~~aV~~r-l~-sd~~vgv~LSGGlDSS~vaala~~~~-----------------~~v~tfti~~~---~ 277 (513)
T 1jgt_A 220 GEAVAAVRAALEKAVAQR-VT-PGDTPLVVLSGGIDSSGVAACAHRAA-----------------GELDTVSMGTD---T 277 (513)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC-TTCCCEEECCSSHHHHHHHHHHHHHH-----------------SSCEEEEEECS---S
T ss_pred HHHHHHHHHHHHHHHHHH-Hh-CCCcEEEECCCcHHHHHHHHHHHHhC-----------------CCceEEEcCCC---C
Confidence 334455666666666543 32 34589999999999999999987642 11334555432 1
Q ss_pred CCCchhHHHHHHHHHHHHhhCCCCCcEEEEecccc-ccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Q 012855 139 VPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESI-FCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASEN 217 (455)
Q Consensus 139 ~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v-~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~ 217 (455)
. + +...++.+++.+ |++++++.+... +. +.+..++..... ..+......+-..++.+.| +.
T Consensus 278 ~--~----E~~~A~~vA~~l---g~~h~~i~i~~~~~~-------~~l~~~~~~~~~-~~p~~~~~~~~~~~l~~~a-~~ 339 (513)
T 1jgt_A 278 S--N----EFREARAVVDHL---RTRHREITIPTTELL-------AQLPYAVWASES-VDPDIIEYLLPLTALYRAL-DG 339 (513)
T ss_dssp C--C----CHHHHHHHHHHH---TCEEEEEECCHHHHH-------TTHHHHHHHHCC-CCHHHHHHHHHHHHHHHHC-CS
T ss_pred C--C----HHHHHHHHHHHh---CCCcEEEECCHHHHH-------HHHHHHHHHhCC-CCcccchhHHHHHHHHHHH-Hc
Confidence 1 1 345577778887 789998877541 10 113333332221 1244444444455666667 68
Q ss_pred CCcEEEcccchhHHH
Q 012855 218 GYNRLLLGLCTSRIA 232 (455)
Q Consensus 218 g~~~l~lGh~~ddlA 232 (455)
|+..|++||..|++-
T Consensus 340 g~~VvltG~GaDElf 354 (513)
T 1jgt_A 340 PERRILTGYGADIPL 354 (513)
T ss_dssp SCCEEECCTTTHHHH
T ss_pred CCCEEEeCCChhhcc
Confidence 999999999999873
No 42
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=97.63 E-value=0.0003 Score=75.17 Aligned_cols=171 Identities=16% Similarity=0.210 Sum_probs=102.6
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCC
Q 012855 56 HCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETA 135 (455)
Q Consensus 56 ~C~~CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~ 135 (455)
.|.+.|...+.. .|..+.++. -.+++|++|||.||.+.+-+...... .-.+++|++-.
T Consensus 279 ~~~~~~~a~~~g-l~dy~~k~g----~~~~vlglSGGiDSal~~~la~~alg---------------~~~v~~v~mp~-- 336 (565)
T 4f4h_A 279 VEAQVYRALVLG-VRDYIGKNG----FPGAIIGLSGGVDSALVLAVAVDALG---------------AERVRAVMMPS-- 336 (565)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTT----CCCEEEECCSSHHHHHHHHHHHHHHC---------------GGGEEEEECCC--
T ss_pred hHHHHHHHHHHH-HHHHHHHcC----CCcEEEecCCCccHHHHHHHHHHHhC---------------CccEEEEeccc--
Confidence 455555544322 233344432 35799999999999987776544311 12355555421
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHh----hcCCCCCHHHHHHHHHHHHHH
Q 012855 136 YYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVD----SVSDATGKEDLLLQLRMLSLQ 211 (455)
Q Consensus 136 ~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~----~~~s~tsred~~~~lRr~lL~ 211 (455)
.++++ ...+..+.+++.+ |+.++.++++.++.. ....+. ......+.+.+-.++|..+|.
T Consensus 337 --~~ts~---~t~~~a~~la~~l---g~~~~~i~i~~~~~~--------~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~ 400 (565)
T 4f4h_A 337 --RYTAG---ISTTDAADMARRV---GVRYDEIAIAPMFDA--------FRASLAAEFAGLAEDATEENIQARIRGTLLM 400 (565)
T ss_dssp --TTCCH---HHHHHHHHHHHHH---TCEEEECCCHHHHHH--------HHHHHTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred --ccccc---chHHHHHHHHHHh---CCceeeeecchHHHH--------HHHHhhhcccCccchhhHhhhcchhhHHHHH
Confidence 12332 4566678888888 799999998765421 111111 111223457788899999999
Q ss_pred HHHHHcCCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcC
Q 012855 212 KFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDC 282 (455)
Q Consensus 212 ~~A~~~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~ 282 (455)
.+|.++|.=.|-+|+ ..| ++.| |-+-++|. .--+-|+-+++|.+|..++++.+
T Consensus 401 ~~an~~g~lvlgTgn----~sE-----~a~G------y~T~~Gd~---~~~~~pi~~l~Kt~v~~l~~~~~ 453 (565)
T 4f4h_A 401 ALSNKFGSIVLTTGN----KSE-----MAVG------YCTLYGDM---AGGFAVIKDIAKTLVYRLCRYRN 453 (565)
T ss_dssp HHHHHHCCEEEECCC----HHH-----HHHT------CSCTTTTT---CSSEETTTTCCHHHHHHHHHHHH
T ss_pred HHHhhcCCcccCCCc----hhh-----Hhhc------cccccCCc---ccCchhccCccHHHHHHHHHHHh
Confidence 999999974444442 222 2222 22222222 23488999999999998887754
No 43
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=97.60 E-value=0.00032 Score=73.90 Aligned_cols=134 Identities=8% Similarity=0.021 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCC
Q 012855 60 CFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPV 139 (455)
Q Consensus 60 CF~~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~ 139 (455)
-..+.+...++.++.+. + ....+|.|++|||.||++++.++.+. .-.+..++|... +.
T Consensus 218 ~~~~~l~~~L~~aV~~r-l-~sd~~v~v~LSGGlDSs~vaala~~~-----------------~~~~~~~t~~~~---~~ 275 (503)
T 1q15_A 218 PLLALIDRYLNAPLEDL-A-PRFDTVGIPLSGGLDSSLVTALASRH-----------------FKKLNTYSIGTE---LS 275 (503)
T ss_dssp HHHHHHHHHHHHHHHHH-G-GGCSEEEEECCSSHHHHHHHHHHTTT-----------------CSEEEEEEEEET---TB
T ss_pred HHHHHHHHHHHHHHHHH-H-hCCCcEEEECCCCHHHHHHHHHHHHh-----------------CCCcEEEEEeCC---Cc
Confidence 34445566666666542 2 23458999999999999999988642 124556666532 11
Q ss_pred CCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 012855 140 PSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGY 219 (455)
Q Consensus 140 s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~ 219 (455)
+ +.+.++.+++.+ |++++++.+... +-.+.+.+.+..... ..+......+...++.+.| +.|+
T Consensus 276 --~----E~~~A~~vA~~l---g~~h~~i~~~~~------~~~~~l~~~~~~~~~-~~p~~~~~~~~~~~l~~~a-~~~~ 338 (503)
T 1q15_A 276 --N----EFEFSQQVADAL---GTHHQMKILSET------EVINGIIESIYYNEI-FDGLSAEIQSGLFNVYRQA-QGQV 338 (503)
T ss_dssp --C----CHHHHHHHHHHH---TCEEEEEEECHH------HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH-BTTB
T ss_pred --c----HHHHHHHHHHHh---CCceEEEECCHH------HHHHHHHHHHHHhcC-CCcccchhHHHHHHHHHHH-HCCC
Confidence 1 245567778887 789998877531 001122233222221 1234444445566777778 6799
Q ss_pred cEEEcccchhHHH
Q 012855 220 NRLLLGLCTSRIA 232 (455)
Q Consensus 220 ~~l~lGh~~ddlA 232 (455)
..|++|+.+|++-
T Consensus 339 ~VvltG~GaDElf 351 (503)
T 1q15_A 339 SCMLTGYGSDLLF 351 (503)
T ss_dssp SEEECCTTHHHHH
T ss_pred CEEEeCCChhhhc
Confidence 9999999999884
No 44
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=94.50 E-value=0.12 Score=43.33 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=29.7
Q ss_pred CEEEEEecCCcc--HHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCC
Q 012855 83 DNVLVAFSGGPS--SRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDET 134 (455)
Q Consensus 83 ~kVLValSGG~d--S~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~ 134 (455)
.+|||++.|+.. |..++.....+.... +-+++++||-+.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~-------------~a~l~ll~v~~~ 42 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARID-------------DAEVHFLTVIPS 42 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHH-------------TCEEEEEEEECC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhc-------------CCeEEEEEEecC
Confidence 589999999999 888887776654321 458889998654
No 45
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=94.43 E-value=0.59 Score=39.34 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=30.2
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
-.+|||++.|+..|..++.....+.... +-+++++||-+
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~-------------~a~l~ll~v~~ 44 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQI-------------GARLSLIHVLD 44 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHH-------------TCEEEEEEEEC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhc-------------CCEEEEEEEEc
Confidence 3589999999999998888777664321 45788999854
No 46
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=94.03 E-value=0.13 Score=43.36 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=30.1
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDET 134 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~ 134 (455)
.+|||++.|+..|..++.....+.... +-+++++||-+.
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~-------------~a~l~ll~v~~~ 41 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLT-------------GAELYILCVFKH 41 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHH-------------CCEEEEEEEECC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhc-------------CCEEEEEEEecC
Confidence 489999999999988888777664321 458889999653
No 47
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=93.93 E-value=0.26 Score=42.51 Aligned_cols=98 Identities=15% Similarity=0.063 Sum_probs=58.2
Q ss_pred CEEEEEecC-CccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchh---HHHHHHHHHHHHhh
Q 012855 83 DNVLVAFSG-GPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEI---DNAIQEIKLIVSNL 158 (455)
Q Consensus 83 ~kVLValSG-G~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~---~~~~~~v~~~~~~l 158 (455)
.+||||+.| +..|..++.....+.... +-+++++||-+.. .+...... ++.++.+.+.+.+.
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~-------------~a~l~llhV~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 90 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLR-------------GVPVYVVHSLPGG-GRTKDEDIIEAKETLSWAVSIIRKE 90 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHH-------------TCCEEEEEEECCS-TTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhc-------------CCEEEEEEEEcCC-CcccHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999 999998888877664321 4578899997642 11111111 12233334444443
Q ss_pred CCCCCcEEEEe-ccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccch
Q 012855 159 SPPTKELHVIP-IESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCT 228 (455)
Q Consensus 159 ~~~~i~~~iv~-l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ 228 (455)
++++.+.- +. .+. + ...|.++|++++++.|++|.+.
T Consensus 91 ---g~~~~~~~~v~--~G~---------------------~--------~~~I~~~a~~~~~DLIV~G~~g 127 (155)
T 3dlo_A 91 ---GAEGEEHLLVR--GKE---------------------P--------PDDIVDFADEVDAIAIVIGIRK 127 (155)
T ss_dssp ---TCCEEEEEEES--SSC---------------------H--------HHHHHHHHHHTTCSEEEEECCE
T ss_pred ---CCCceEEEEec--CCC---------------------H--------HHHHHHHHHHcCCCEEEECCCC
Confidence 45554321 11 011 0 1336788999999999999664
No 48
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=92.47 E-value=0.97 Score=37.70 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=30.0
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDET 134 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~ 134 (455)
.+|||++.|+..|..++.....+.... +-+++++||-+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~-------------~a~l~ll~v~~~ 44 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRH-------------QANLTALYVVDD 44 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHH-------------TCEEEEEEEEEC
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhc-------------CCEEEEEEEecC
Confidence 589999999999988888777664321 457889998553
No 49
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=92.45 E-value=2.4 Score=34.96 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=29.3
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
.+|||+++|+..|..++.....+.... +-+++++||.+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~-------------~a~l~ll~v~~ 40 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAH-------------GARLIVVHAYE 40 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHH-------------TCEEEEEEEEC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc-------------CCEEEEEEEec
Confidence 489999999999988887776654321 45788999865
No 50
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=92.03 E-value=0.99 Score=42.80 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=66.7
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhC
Q 012855 80 TPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLS 159 (455)
Q Consensus 80 ~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~ 159 (455)
.+..+||||+.|+..|.-.+.....+.... +-++.++||.... . .++..+.+.+++++.
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~-------------~~~l~ll~v~~~~-~------~~~~l~~~~~~l~~~- 226 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKT-------------GGELHIIHVSEDG-D------KTADLRVMEEVIGAE- 226 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHH-------------TCEEEEEEECSSS-C------CHHHHHHHHHHHHHT-
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhc-------------CCEEEEEEEccCc-h------HHHHHHHHHHHHHHc-
Confidence 345799999999999998888887764321 4588999997642 1 124566677777665
Q ss_pred CCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchh-HHHHHHHH
Q 012855 160 PPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTS-RIACHVIT 237 (455)
Q Consensus 160 ~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~d-dlAet~L~ 237 (455)
+++.++.-.. + + -...|.++|++.+++.|++|.+.- .+...++.
T Consensus 227 --~~~~~~~~~~---g-~----------------------------~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~G 271 (294)
T 3loq_A 227 --GIEVHVHIES---G-T----------------------------PHKAILAKREEINATTIFMGSRGAGSVMTMILG 271 (294)
T ss_dssp --TCCEEEEEEC---S-C----------------------------HHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHH
T ss_pred --CCcEEEEEec---C-C----------------------------HHHHHHHHHHhcCcCEEEEeCCCCCCccceeeC
Confidence 5554432111 1 0 123366889999999999997643 44444443
No 51
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=91.97 E-value=2.7 Score=34.70 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=28.7
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEe
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVD 132 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD 132 (455)
.+|||++.|+..|..++.....+.... +-+++++||.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~-------------~a~l~ll~v~ 39 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRH-------------DAKLSIIHVD 39 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHH-------------TCEEEEEEEE
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhc-------------CCEEEEEEEe
Confidence 489999999999998887776664321 4578899986
No 52
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=91.08 E-value=0.86 Score=39.49 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=29.6
Q ss_pred CCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEE--EEe
Q 012855 79 ITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVV--FVD 132 (455)
Q Consensus 79 i~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv--~VD 132 (455)
.....+|||++.|+..|..++.....+.. .+-++.++ ||-
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~--------------~~a~l~ll~a~v~ 55 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG--------------ADAKLIIASAYLP 55 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT--------------TTSEEEEEEECCC
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC--------------CCCEEEEEEeeec
Confidence 34457999999999999888877766531 14578888 763
No 53
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=91.07 E-value=1.4 Score=37.91 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=28.8
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
-.+|||++.|+.+|..++.....+.. ..+-+++++||-+
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~-------------~~~a~l~ll~v~~ 43 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNK-------------MEVGEVILLHVID 43 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCC-------------SCCSEEEEEEEEE
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHH-------------hcCCEEEEEEEec
Confidence 35899999999999888877766521 1256888999853
No 54
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=90.66 E-value=0.95 Score=37.41 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=31.0
Q ss_pred CEEEEEecCCccHHHHHHHHHHHH-HHHhhccccccCCCCCceEEEEEEEeCC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQ-QRAQKNFDASKDRSLPVFGVGVVFVDET 134 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~-~~~~~~~~~~~~r~~~~f~l~vv~VD~~ 134 (455)
.+|||++.|+..|..++.....+. . ..+-+++++||-+.
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~-------------~~~a~l~ll~v~~~ 41 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGK-------------DADCTLTLIHVKPE 41 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTT-------------CTTEEEEEEEEECC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhcc-------------CCCCEEEEEEEecC
Confidence 379999999999998888877763 2 12678999999765
No 55
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=90.35 E-value=1.9 Score=40.70 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=30.3
Q ss_pred CCCEEEEEecCCcc-------HHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCC
Q 012855 81 PADNVLVAFSGGPS-------SRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDET 134 (455)
Q Consensus 81 ~g~kVLValSGG~d-------S~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~ 134 (455)
+..+||||+.|+.. |.-++.....+... .+-+++++||-+.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~-------------~~a~l~ll~v~~~ 180 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGL-------------AKATLHVISAHPS 180 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH-------------TTCEEEEEEEEC-
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHH-------------cCCeEEEEEEecC
Confidence 45799999999998 77777777665431 1468899999754
No 56
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=89.93 E-value=2.6 Score=35.63 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=29.2
Q ss_pred CEEEEEec--CCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCC
Q 012855 83 DNVLVAFS--GGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDET 134 (455)
Q Consensus 83 ~kVLValS--GG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~ 134 (455)
.+|||++. |+..|..++.....+.... +-+++++||-+.
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~~-------------~a~l~ll~v~~~ 56 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHDY-------------DVPLGICSVLES 56 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHHH-------------TCCEEEEEEECC
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhc-------------CCEEEEEEEEeC
Confidence 58999999 9999999888877664321 457889998653
No 57
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=88.09 E-value=2.6 Score=35.78 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=28.9
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
-.+||||+.|+..|..++.....+.. ..+-+++++||-+
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~-------------~~~a~l~ll~v~~ 43 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKT-------------LKAEEVILLHVID 43 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCC-------------SSCCEEEEEEEEE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHh-------------hcCCeEEEEEEec
Confidence 35899999999999888777665411 1256889999853
No 58
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=86.30 E-value=6 Score=37.53 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=64.4
Q ss_pred CCCEEEEEecCCcc-------HHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCC----CCchh-----
Q 012855 81 PADNVLVAFSGGPS-------SRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPV----PSSEI----- 144 (455)
Q Consensus 81 ~g~kVLValSGG~d-------S~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~----s~~e~----- 144 (455)
+..+||||+.|+.. |.-++.....+.... .|+-+++++||........ +..+.
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~-----------~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~ 223 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRI-----------QKDPDVHLLSAYPVAPINIAIELPDFDPNLYNN 223 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHH-----------CSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhc-----------cCCCeEEEEEeecCcchhhhccCCcccHHHHHH
Confidence 45799999999994 566676666554321 0135788999975421110 10000
Q ss_pred ---HHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcE
Q 012855 145 ---DNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNR 221 (455)
Q Consensus 145 ---~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~ 221 (455)
++..+.++++.++++.+.+..++.. +. -...|.++|++++++.
T Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~-----g~-----------------------------~~~~I~~~a~~~~~dL 269 (319)
T 3olq_A 224 ALRGQHLIAMKELRQKFSIPEEKTHVKE-----GL-----------------------------PEQVIPQVCEELNAGI 269 (319)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEE-----SC-----------------------------HHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEec-----CC-----------------------------cHHHHHHHHHHhCCCE
Confidence 1123445556666532112232221 10 0234678999999999
Q ss_pred EEcccc-hhHHHHHHHHHHh
Q 012855 222 LLLGLC-TSRIACHVITATV 240 (455)
Q Consensus 222 l~lGh~-~ddlAet~L~nl~ 240 (455)
|++|.+ ...+...++.+++
T Consensus 270 iV~G~~g~~~~~~~~~Gsv~ 289 (319)
T 3olq_A 270 VVLGILGRTGLSAAFLGNTA 289 (319)
T ss_dssp EEEECCSCCSTHHHHHHHHH
T ss_pred EEEeccCccCCccccccHHH
Confidence 999976 4455555665554
No 59
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=85.92 E-value=1.2 Score=36.86 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=28.4
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEe
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVD 132 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD 132 (455)
.+|||++.|...|...+.....+.. ..+-+++++||-
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~-------------~~~a~l~ll~v~ 41 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSE-------------KLGAELDILAVL 41 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHT-------------TTCCEEEEEEEC
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHH-------------HcCCeEEEEEEe
Confidence 4899999999999888877666532 125688999986
No 60
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=85.92 E-value=3.9 Score=35.27 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=28.0
Q ss_pred CEEEEEecCCc---------cHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 83 DNVLVAFSGGP---------SSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 83 ~kVLValSGG~---------dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
.+|||++.|+. .|..++.....+.. + +...+-+++++||-.
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~---~-------~~~~~a~l~ll~v~~ 55 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIV---R-------SNTSDFKILLLHVQV 55 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTT---T-------TCTTSEEEEEEEEEC
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhh---c-------ccCCCCEEEEEEEee
Confidence 58999999999 88877776655411 0 001256899999853
No 61
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=85.91 E-value=3 Score=34.14 Aligned_cols=76 Identities=16% Similarity=0.067 Sum_probs=45.0
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCc--------hhHHHHHHHHHH
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSS--------EIDNAIQEIKLI 154 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~--------e~~~~~~~v~~~ 154 (455)
-||||.++||.+|+.|..-+.+..++. ++++.+..+..+.+...-.+ ...-..+.+++.
T Consensus 7 mkIlL~C~aGmSTsllv~km~~~a~~~-------------gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~ 73 (108)
T 3nbm_A 7 LKVLVLCAGSGTSAQLANAINEGANLT-------------EVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVD 73 (108)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHHHH-------------TCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-------------CCceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHH
Confidence 489999999998888777666543321 44555544444322111000 012235667777
Q ss_pred HHhhCCCCCcEEEEecccccc
Q 012855 155 VSNLSPPTKELHVIPIESIFC 175 (455)
Q Consensus 155 ~~~l~~~~i~~~iv~l~~v~~ 175 (455)
+... ++|+.+++-.+ |+
T Consensus 74 ~~~~---~ipV~vI~~~~-Yg 90 (108)
T 3nbm_A 74 AERL---GIQIVATRGME-YI 90 (108)
T ss_dssp HTTT---TCEEEECCHHH-HH
T ss_pred hhhc---CCcEEEeCHHH-hh
Confidence 7665 78998887654 44
No 62
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=82.57 E-value=7.3 Score=36.57 Aligned_cols=94 Identities=6% Similarity=0.034 Sum_probs=60.3
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
-.+|||++.|+..|..++.....+.... +-+++++||.+. ++.++.++.+.+.+...
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la~~~-------------~a~l~ll~v~~~-------~~~~~~l~~~~~~~~~~--- 63 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIAGVT-------------QSHLHLLVCEKR-------RDHSAALNDLAQELREE--- 63 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHHHHH-------------CCEEEEEEECSS-------SCCHHHHHHHHHHHHHT---
T ss_pred hceEEEEeCCCccchHHHHHHHHHHHhc-------------CCeEEEEEeeCc-------HHHHHHHHHHHHHHhhC---
Confidence 4689999999999988888776664321 458899998652 12234555555555443
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchh
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTS 229 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~d 229 (455)
+++++..-.. +.+ . ...|.+.|++.+++.|++|.+..
T Consensus 64 ~~~~~~~~~~---~g~--------------------~--------~~~i~~~a~~~~~dliV~G~~~~ 100 (290)
T 3mt0_A 64 GYSVSTNQAW---KDS--------------------L--------HQTIIAEQQAEGCGLIIKQHFPD 100 (290)
T ss_dssp TCCEEEEEEC---SSS--------------------H--------HHHHHHHHHHHTCSEEEEECCCS
T ss_pred CCeEEEEEEe---CCC--------------------H--------HHHHHHHHHhcCCCEEEEecccC
Confidence 6666543221 110 0 12356788999999999997653
No 63
>2p09_A A non-biological ATP binding protein with two MUT N32D and D65V; alpha/beta fold, de novo protein; HET: ATP 1PE; 1.65A {Unidentified} PDB: 3dgl_A* 3dgm_A* 3dgn_A* 3ltb_A* 3ltc_A* 3ltd_A* 3dgo_A* 3lta_A* 3lt8_A* 3lt9_A* 2p05_A* 1uw1_A* 2p0x_A*
Probab=81.71 E-value=0.78 Score=33.56 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=20.7
Q ss_pred ccccccCCCCCceecC-----CCCCCcHHHHHHHH
Q 012855 36 NLCVKCKANEPTPGAG-----EDGKHCLDCFRSNL 65 (455)
Q Consensus 36 ~~C~kCk~~~av~~~r-----~~~~~C~~CF~~~i 65 (455)
.+|+||+..+.-..+. --. .|+.||...|
T Consensus 23 rpcvkckvaprdwkvknkhlriyn-mcktcfnnsi 56 (81)
T 2p09_A 23 RPCVKCKVAPRDWKVKNKHLRIYN-MCKTCFNNSI 56 (81)
T ss_dssp SCCTTTSSSCCCEEEETTEEEEES-SCHHHHHHHH
T ss_pred ccceeeeecCccceeccceeeHHH-HHHHHhcCce
Confidence 5799999877544333 223 8999998765
No 64
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=74.09 E-value=13 Score=35.21 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=28.7
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
.+|||++.|...|...+..-..+.... +-.+.++||-+
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~-------------~a~l~ll~v~~ 45 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRN-------------GGRIKAFLPVY 45 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHH-------------CCEEEEEEEEC
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHc-------------CCeEEEEEEec
Confidence 589999999999988887766654321 45888999843
No 65
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=70.02 E-value=10 Score=35.95 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=29.9
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
..+||||+.|+..|..++.....+... .+-+++++||.+
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~-------------~~a~l~ll~v~~ 209 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASR-------------RNVDLVALHAWS 209 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHH-------------TTCCEEEEEESC
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHh-------------cCCEEEEEEEee
Confidence 468999999999998888877665431 145788999964
No 66
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=69.97 E-value=17 Score=35.36 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPS 141 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~ 141 (455)
++.-..+...|..+..+..+.+..||||||..=..+...|.... .....| +++++++||-...+..+
T Consensus 40 ~~aA~~i~~~I~~~~~~~~~~~~~l~LsgGsTP~~ly~~L~~~~------------~~~idw~~V~~f~~DEr~vp~d~~ 107 (312)
T 3e15_A 40 QKSAYYICHQIAEKQLSKEGGHVVIGLSGGKTPIDVYKNIALVK------------DIKIDTSKLIFFIIDERYKRDDHK 107 (312)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCEEEECCSHHHHHHHHHHTTCC------------SSCCCGGGCEEEESEEECCTTCCT
T ss_pred HHHHHHHHHHHHhhhhhhhCCCEEEEEeCCCCHHHHHHHHHHhh------------ccCCCccceEEEEeeeecCCCCCh
Confidence 33333343344333334556689999999977777777664210 112234 57899999864322221
Q ss_pred chhHHHHHHHHHHHHhh
Q 012855 142 SEIDNAIQEIKLIVSNL 158 (455)
Q Consensus 142 ~e~~~~~~~v~~~~~~l 158 (455)
+.....++.+...+
T Consensus 108 ---~Sn~~~~~~l~~~v 121 (312)
T 3e15_A 108 ---FSNYNNIKFLFESL 121 (312)
T ss_dssp ---TCHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhcC
Confidence 22334456666665
No 67
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.44 E-value=11 Score=26.96 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=21.9
Q ss_pred CccccccCCCCCceecCCCCCCcHHHHHHHHH
Q 012855 35 QNLCVKCKANEPTPGAGEDGKHCLDCFRSNLF 66 (455)
Q Consensus 35 ~~~C~kCk~~~av~~~r~~~~~C~~CF~~~i~ 66 (455)
...|..|+.+.++|.-=+.. +|+.||.++..
T Consensus 18 ~~rC~vcGr~~g~iRkfGL~-~cR~cfRe~A~ 48 (56)
T 3j20_P 18 ARRCIRCGQYGPIIRIQGLM-LCRHCFREVAP 48 (56)
T ss_dssp TCCCSSSCCSSSCCCTTTCC-CCHHHHHHHHH
T ss_pred ceEeecCCCCcccccccCCh-HHHHHHHHHHH
Confidence 35799999987654322444 69999988753
No 68
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=62.69 E-value=6.3 Score=28.22 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=22.7
Q ss_pred CccccccCCCCCceecCCCCCCcHHHHHHHHH
Q 012855 35 QNLCVKCKANEPTPGAGEDGKHCLDCFRSNLF 66 (455)
Q Consensus 35 ~~~C~kCk~~~av~~~r~~~~~C~~CF~~~i~ 66 (455)
...|..|+.+.++|.-=+.. +|+.||.++..
T Consensus 17 ~nrC~~cGr~rg~iRkfgl~-lcR~cFRe~A~ 47 (55)
T 2xzm_N 17 SKECRVCGARQGLITKYEMM-TCRRCFREQAP 47 (55)
T ss_dssp GCCCTTTCCSSTTCCCSSSC-CCHHHHHHHHH
T ss_pred ceEeecCCCCcchHHHhCCc-hhhHHHHHHHH
Confidence 45799999987655322455 99999988753
No 69
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=62.56 E-value=9 Score=30.97 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=27.5
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCC
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDET 134 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~ 134 (455)
||||++++|.+|+.|+.-+.+..++. ++++.+-+++.+
T Consensus 5 kIll~Cg~G~sTS~l~~k~~~~~~~~-------------gi~~~i~a~~~~ 42 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVSKMRAQAEKY-------------EVPVIIEAFPET 42 (106)
T ss_dssp EEEEECSSSTTTHHHHHHHHHHHHHS-------------CCSEEEEEECSS
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHC-------------CCCeEEEEecHH
Confidence 79999999999998777666654321 556666776655
No 70
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=60.55 E-value=7.1 Score=26.42 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=16.5
Q ss_pred ccccCCCCCce--ecCCCCCCcHHHHHH
Q 012855 38 CVKCKANEPTP--GAGEDGKHCLDCFRS 63 (455)
Q Consensus 38 C~kCk~~~av~--~~r~~~~~C~~CF~~ 63 (455)
=+||..+.-.+ .+...+ +|.+||.+
T Consensus 11 ~vkCeTPnCpF~mSVnTQP-~CHEC~er 37 (49)
T 2eqg_A 11 DVKCETPNCPFFMSVNTQP-LCHECSER 37 (49)
T ss_dssp SSBCSSTTCCSBCCTTTTT-SCHHHHHH
T ss_pred EEeecCCCCCeEEEecCcc-chHHHHHH
Confidence 46787655444 333555 99999974
No 71
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=59.91 E-value=6.3 Score=28.34 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=22.7
Q ss_pred CccccccCCCCCceecCCCCCCcHHHHHHHHH
Q 012855 35 QNLCVKCKANEPTPGAGEDGKHCLDCFRSNLF 66 (455)
Q Consensus 35 ~~~C~kCk~~~av~~~r~~~~~C~~CF~~~i~ 66 (455)
...|..|+.+.++|.-=+.. +|+.||.++..
T Consensus 18 s~rC~vcGr~~g~iRkfGl~-lcR~cfRe~A~ 48 (56)
T 3u5c_d 18 SRQCRVCSSHTGLIRKYGLN-ICRQCFREKAN 48 (56)
T ss_dssp GCCCTTTCCCSSEECGGGCC-EEHHHHHHHHH
T ss_pred cceeecCCCCcccccccCcc-hhHHHHHHHHH
Confidence 35699999987655322566 99999988753
No 72
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=57.95 E-value=14 Score=33.86 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=29.1
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEE
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVF 130 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~ 130 (455)
+.+|+||+|||....-.+.++..+++ .++++++|.
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~~--------------~g~eV~vv~ 38 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLVQ--------------EEREVHFLI 38 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHH--------------TTCEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH--------------CCCEEEEEE
Confidence 46899999999999999999988754 167888876
No 73
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=57.33 E-value=22 Score=33.20 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
.-.+|||++.|+..|..++.....+... .+-++.++||-+
T Consensus 21 m~~~ILv~vD~s~~s~~al~~A~~lA~~-------------~~a~l~ll~v~~ 60 (294)
T 3loq_A 21 QSNAMLLPTDLSENSFKVLEYLGDFKKV-------------GVEEIGVLFVIN 60 (294)
T ss_dssp TTCEEEEECCSCTGGGGGGGGHHHHHHT-------------TCCEEEEECCEE
T ss_pred hhccEEEecCCCHHHHHHHHHHHHHHhh-------------cCCEEEEEEEec
Confidence 3469999999999998888877666331 146788898854
No 74
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=53.58 E-value=44 Score=30.44 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=41.5
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCC
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSP 160 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~ 160 (455)
+..+||||+.|+..|.-++.....+.... +-+++++||.... ++.++..+.+.+...+.
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~-------------~a~l~ll~v~~~~------~~~~~~l~~~~~~l~~~-- 211 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARAL-------------GLGVRVVSVHEDP------ARAEAWALEAEAYLRDH-- 211 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHH-------------TCCEEEEEECSSH------HHHHHHHHHHHHHHHHT--
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcC-------------CCEEEEEEEcCcH------HHHHHHHHHHHHHHHHc--
Confidence 34699999999999988887766553311 4468899986531 12233445556666554
Q ss_pred CCCcEEE
Q 012855 161 PTKELHV 167 (455)
Q Consensus 161 ~~i~~~i 167 (455)
|+++++
T Consensus 212 -~~~~~~ 217 (268)
T 3ab8_A 212 -GVEASA 217 (268)
T ss_dssp -TCCEEE
T ss_pred -CCceEE
Confidence 566543
No 75
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=49.76 E-value=7.3 Score=28.00 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=19.8
Q ss_pred ccccccCCCCCceecCCCCCCcHHHHHHH
Q 012855 36 NLCVKCKANEPTPGAGEDGKHCLDCFRSN 64 (455)
Q Consensus 36 ~~C~kCk~~~av~~~r~~~~~C~~CF~~~ 64 (455)
..|..|+.+.++|.-=+.. +|+.||.++
T Consensus 19 ~rC~vcGr~~g~iRkfGL~-~cR~cfRe~ 46 (56)
T 3iz6_N 19 RVCRVCGNSHGLIRKYGLM-CCRQCFRSD 46 (56)
T ss_dssp CCCSSCCCSCCCTTTTSCT-THHHHHHTT
T ss_pred ceeecCCCCcccccccCCc-HHHHHHHHH
Confidence 5699999987644211444 699999875
No 76
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=48.27 E-value=14 Score=33.45 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=29.1
Q ss_pred CCCCEEEEEecCCccHH-HHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 80 TPADNVLVAFSGGPSSR-VALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 80 ~~g~kVLValSGG~dS~-vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
..+.||+||++||.... -.+.++..+++ .++++++|.=+.
T Consensus 5 l~~k~I~lgiTGs~aa~~k~~~ll~~L~~--------------~g~eV~vv~T~~ 45 (201)
T 3lqk_A 5 FAGKHVGFGLTGSHCTYHEVLPQMERLVE--------------LGAKVTPFVTHT 45 (201)
T ss_dssp CTTCEEEEECCSCGGGGGGTHHHHHHHHH--------------TTCEEEEECSSC
T ss_pred cCCCEEEEEEEChHHHHHHHHHHHHHHhh--------------CCCEEEEEEChh
Confidence 45679999999997666 57778877743 167887776443
No 77
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=46.33 E-value=24 Score=31.54 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=26.9
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEE
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVF 130 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~ 130 (455)
.||+||+|||....-...++..+.+ .++++++|.
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~--------------~g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEE--------------LDFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHH--------------TTCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHH--------------CCCEEEEEE
Confidence 3899999999998888888887743 167877776
No 78
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=46.02 E-value=28 Score=25.34 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=21.6
Q ss_pred CccccccCCCCCceecCCCCCCcHHHHHHHH
Q 012855 35 QNLCVKCKANEPTPGAGEDGKHCLDCFRSNL 65 (455)
Q Consensus 35 ~~~C~kCk~~~av~~~r~~~~~C~~CF~~~i 65 (455)
...|..|+.+.++| |.-. +|+-||.++.
T Consensus 21 ~nRC~~~GR~rg~i--Rkfg-lcR~~FRe~A 48 (61)
T 2vqe_N 21 YTRCVRCGRARSVY--RFFG-LCRICLRELA 48 (61)
T ss_dssp CCCCTTTCCCTTCC--TTTS-SCHHHHHHHH
T ss_pred ceeeecCCCCceee--ccCc-eeHHHHHHHH
Confidence 45799999987654 5444 9999998874
No 79
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=43.73 E-value=19 Score=32.80 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=26.3
Q ss_pred CCCEEEEEecCCccHHH-HHHHHHHHHHHHhhccccccCCCCCceEEEEEEEe
Q 012855 81 PADNVLVAFSGGPSSRV-ALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVD 132 (455)
Q Consensus 81 ~g~kVLValSGG~dS~v-LL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD 132 (455)
.+.||+||+|||....- .+.++..+.+ .++++.+|.=.
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~--------------~g~eV~vv~T~ 42 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIA--------------EGAEVRPVVSY 42 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHH--------------TTCEEEEEECC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHh--------------CCCEEEEEEeh
Confidence 45799999999964432 5677777643 16788877633
No 80
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=42.44 E-value=18 Score=32.97 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=27.8
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEE
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVF 130 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~ 130 (455)
.+.+|+||++||....-...++..+.+ ..++++.||.
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L~~-------------~~g~~V~vv~ 54 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKLLD-------------IPGLEVAVVT 54 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHHC----------------CEEEEEEE
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHHhc-------------ccCCEEEEEE
Confidence 456899999999998888888877732 0268888876
No 81
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=40.67 E-value=19 Score=31.91 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=27.5
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEE
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFV 131 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~V 131 (455)
.||+||++||....-.+.++..+++ .++++++|.=
T Consensus 6 k~IllgvTGs~aa~k~~~ll~~L~~--------------~g~~V~vv~T 40 (175)
T 3qjg_A 6 ENVLICLCGSVNSINISHYIIELKS--------------KFDEVNVIAS 40 (175)
T ss_dssp CEEEEEECSSGGGGGHHHHHHHHTT--------------TCSEEEEEEC
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHH--------------CCCEEEEEEC
Confidence 5899999999998888888877732 2678887773
No 82
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=38.81 E-value=37 Score=30.59 Aligned_cols=34 Identities=15% Similarity=0.483 Sum_probs=26.8
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEE
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVF 130 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~ 130 (455)
||+||+|||....-...++..+.+ .+++++++|.
T Consensus 2 ~IllgvTGsiaa~k~~~ll~~L~~-------------~~g~~V~vv~ 35 (197)
T 1sbz_A 2 KLIVGMTGATGAPLGVALLQALRE-------------MPNVETHLVM 35 (197)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHT-------------CTTCEEEEEE
T ss_pred EEEEEEeChHHHHHHHHHHHHHHh-------------ccCCEEEEEE
Confidence 799999999999888888887742 1257887776
No 83
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=37.63 E-value=16 Score=32.87 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=27.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEE
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVF 130 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~ 130 (455)
+.||+||++||....-...++..+.+ .++++++|.
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~--------------~g~~V~vv~ 42 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS--------------FFKEIRVVM 42 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT--------------TSSEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH--------------CCCEEEEEE
Confidence 56999999999998877888877631 267887776
No 84
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=37.58 E-value=27 Score=31.80 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.3
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHH
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQ 106 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~ 106 (455)
+.+|+||++||....-.+.++..+.
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~ 43 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFT 43 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHH
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHh
Confidence 5699999999998888888888774
No 85
>2lev_A LER; transcription regulator-DNA complex, arginine-minor-groove recognition; HET: DNA; NMR {Escherichia coli}
Probab=37.34 E-value=13 Score=26.72 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=19.7
Q ss_pred CCHHHHHHHHhhhhcchHHHHHHhhhhcCCCCCCC
Q 012855 420 LPEPLVARAKHVRNGDSSLLREQIQDFLLSDSEDD 454 (455)
Q Consensus 420 lp~~~~~~~~~~~~~~~~~m~~~i~~~ll~~~~~~ 454 (455)
-|.||...++.- ..++||||++.|++
T Consensus 32 ~P~Wi~~al~aG---------ksledFlI~~~e~~ 57 (57)
T 2lev_A 32 QPRWLKEALLNG---------MKKEDFLVKDTEEE 57 (57)
T ss_dssp CCHHHHHHHHTT---------SCGGGGEEESSSCC
T ss_pred CCHHHHHHHHcC---------CCHHHhccCCcccC
Confidence 789998887765 24789999877653
No 86
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=37.11 E-value=1.3e+02 Score=27.95 Aligned_cols=110 Identities=15% Similarity=0.260 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCC---ccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGG---PSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPV 139 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG---~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~ 139 (455)
.-+..+++.++... |+-.-+-=.=|+ .|.-+|-+++..+.+. + .++||.++ .+.
T Consensus 83 ~ei~~~l~~al~~v----P~a~GvnNHmGS~~T~~~~~m~~vm~~l~~~--------------g----L~fvDS~T-s~~ 139 (245)
T 2nly_A 83 GEVKSRVRKAFDDI----PYAVGLNNHMGSKIVENEKIMRAILEVVKEK--------------N----AFIIDSGT-SPH 139 (245)
T ss_dssp HHHHHHHHHHHHHS----TTCCEEEEEECTTGGGCHHHHHHHHHHHHHT--------------T----CEEEECCC-CSS
T ss_pred HHHHHHHHHHHHHC----CCcEEEecccccchhcCHHHHHHHHHHHHHC--------------C----CEEEcCCC-Ccc
Confidence 45677777776542 222222222233 3566677777666431 3 46888875 333
Q ss_pred CCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHHHcC
Q 012855 140 PSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSD-ATGKEDLLLQLRMLSLQKFASENG 218 (455)
Q Consensus 140 s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s-~tsred~~~~lRr~lL~~~A~~~g 218 (455)
+. +.+.++++ |+|+-... +| .+ . ..+...+.+.|.+ +..+|+++|
T Consensus 140 S~---------a~~~A~~~---gvp~~~rd---vF-LD----------------~~~~~~~~I~~ql~~--a~~~A~~~G 185 (245)
T 2nly_A 140 SL---------IPQLAEEL---EVPYATRS---IF-LD----------------NTHSSRKEVIKNMRK--LAKKAKQGS 185 (245)
T ss_dssp CS---------HHHHHHHT---TCCEEECC---EE-SC----------------CTTCCHHHHHHHHHH--HHHHHHTTS
T ss_pred cH---------HHHHHHHc---CCCeEEee---EE-CC----------------CCCCCHHHHHHHHHH--HHHHHhhcC
Confidence 31 34555666 67775432 23 11 1 2344555555554 568899988
Q ss_pred CcEEEcccchhH
Q 012855 219 YNRLLLGLCTSR 230 (455)
Q Consensus 219 ~~~l~lGh~~dd 230 (455)
..|++||-...
T Consensus 186 -~aIaIGhp~p~ 196 (245)
T 2nly_A 186 -EPIGIGHVGVR 196 (245)
T ss_dssp -CCEEEEECSTT
T ss_pred -cEEEEECCCCC
Confidence 67899997764
No 87
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=36.55 E-value=13 Score=27.60 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=21.4
Q ss_pred CccccccCCCCCceecC---CCCCCcHHHHHHHH
Q 012855 35 QNLCVKCKANEPTPGAG---EDGKHCLDCFRSNL 65 (455)
Q Consensus 35 ~~~C~kCk~~~av~~~r---~~~~~C~~CF~~~i 65 (455)
.-.|..|.+. |++.=. ++. ||..||.++-
T Consensus 8 ~pWC~ICneD-AtlrC~gCdgDL-YC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNED-ATLRCAGCDGDL-YCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSC-CCEEETTTTSEE-ECSSHHHHHT
T ss_pred CCeeEEeCCC-CeEEecCCCCce-ehHHHHHHHc
Confidence 3569999987 455333 677 9999998874
No 88
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=33.47 E-value=21 Score=31.82 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=27.7
Q ss_pred CEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEe
Q 012855 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVD 132 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD 132 (455)
.||+||++||....-.+.++..+.+ .++++++|.=+
T Consensus 3 k~IllgvTGs~aa~k~~~l~~~L~~--------------~g~~V~vv~T~ 38 (181)
T 1g63_A 3 GKLLICATASINVININHYIVELKQ--------------HFDEVNILFSP 38 (181)
T ss_dssp CCEEEEECSCGGGGGHHHHHHHHTT--------------TSSCEEEEECG
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHH--------------CCCEEEEEEch
Confidence 3799999999999888888887732 16788777744
No 89
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=33.18 E-value=68 Score=29.46 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYP 138 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~ 138 (455)
++|...++..+.+ +.+..||||||..=..+...|.+. ...| +++++++||-.+.+
T Consensus 23 ~~i~~~i~~~i~~------~~~~~l~lsgGstp~~~y~~L~~~---------------~idw~~v~~f~~DEr~vp~ 78 (233)
T 3nwp_A 23 SKIASQLQEAVDA------RGKASLVVSGGSTPLKLFQLLSMK---------------SIDWSDVYITLADERWVEA 78 (233)
T ss_dssp HHHHHHHHHHHHH------HSCEEEEECCSSTTHHHHHHHHHC---------------CSCGGGEEEEESEEESSCT
T ss_pred HHHHHHHHHHHHh------CCCEEEEEcCCCCHHHHHHHHHhc---------------CCChhHeEEEeCeecccCC
Confidence 4455555655543 357999999998877777777531 1134 68899999975443
No 90
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.39 E-value=38 Score=25.88 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=16.5
Q ss_pred cccccCCCCC--ceecC-CCCCCcHHHHHHHH
Q 012855 37 LCVKCKANEP--TPGAG-EDGKHCLDCFRSNL 65 (455)
Q Consensus 37 ~C~kCk~~~a--v~~~r-~~~~~C~~CF~~~i 65 (455)
.|..|+..-. .+..+ +.. ||+.||.+.+
T Consensus 53 ~C~~C~~~L~~~~f~~~~g~~-yC~~cy~~~f 83 (90)
T 2dar_A 53 NCAHCKNTMAYIGFVEEKGAL-YCELCYEKFF 83 (90)
T ss_dssp BCSSSCCBCSSSCBEESSSCE-ECHHHHHHHT
T ss_pred ccCCCCCCCCCCEeEeECCEE-ECHHHHHHHc
Confidence 4666654322 23344 555 9999997653
No 91
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=31.93 E-value=1e+02 Score=28.02 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=35.8
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCCchhHHHHHHHHHH
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPSSEIDNAIQEIKLI 154 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~ 154 (455)
...+..||||||..=..+...|.+. ...| +++++++||-.+.+..+ +.....+++.
T Consensus 31 ~~~~~~l~LsgGstp~~~y~~L~~~---------------~idw~~v~~f~~DEr~vp~~~~---~Sn~~~~~~~ 87 (226)
T 3lwd_A 31 KRERALLVVSGGSTPKPFFTSLAAK---------------ALPWARVDVTLADERWVTADDA---DSNARLVRET 87 (226)
T ss_dssp TSSCEEEEECCSSTTHHHHHHHHTS---------------CSCGGGEEEEESEEESSCTTST---TCHHHHHHHH
T ss_pred hCCCEEEEEcCCCCHHHHHHHHHhc---------------CCCchhEEEEEeeecccCCCCh---HHHHHHHHHH
Confidence 3568999999998777777776531 1234 68899999976444332 2344445543
No 92
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=31.08 E-value=1.4e+02 Score=28.41 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=29.9
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDET 134 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~ 134 (455)
+.+..||||||..=..+...|.+.... ....| +++++++||-
T Consensus 53 ~~~~~l~LsgGsTP~~~y~~L~~~~~~-----------~~idw~~v~~f~~DEr 95 (289)
T 3hn6_A 53 ENPFILGLPTGSSPIGMYKNLIELNKN-----------KKISFQNVITFNMDEY 95 (289)
T ss_dssp TBCEEEEECCSSTTHHHHHHHHHHHHT-----------TSCCCTTEEEEESEEE
T ss_pred CCcEEEEECCCccHHHHHHHHHHhHhh-----------cCCCchheEEEeCcce
Confidence 346899999999888888888764321 11234 5789999994
No 93
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=30.80 E-value=40 Score=22.95 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=10.5
Q ss_pred CCCCCcHHHHHHH
Q 012855 52 EDGKHCLDCFRSN 64 (455)
Q Consensus 52 ~~~~~C~~CF~~~ 64 (455)
.+. ||--||++|
T Consensus 31 n~G-FCTlCf~ey 42 (48)
T 2eqe_A 31 NKG-FCTLCFIEY 42 (48)
T ss_dssp TTT-CCHHHHHHH
T ss_pred cCc-eeeeehhhh
Confidence 566 999999987
No 94
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=30.12 E-value=51 Score=26.30 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=17.9
Q ss_pred EEEEEecCCccHHHHHHHHHHHH
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQ 106 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~ 106 (455)
||||++++|..|+.|..-|.+..
T Consensus 6 kIlvvC~~G~~TSll~~kl~~~~ 28 (109)
T 2l2q_A 6 NILLVCGAGMSTSMLVQRIEKYA 28 (109)
T ss_dssp EEEEESSSSCSSCHHHHHHHHHH
T ss_pred EEEEECCChHhHHHHHHHHHHHH
Confidence 79999999998886666665543
No 95
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=29.08 E-value=95 Score=28.78 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPS 141 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~ 141 (455)
++|...++.++.+ +.+..||||||..=..++..|.+.. . ...| +++++++||-.+.+..+
T Consensus 25 ~~i~~~i~~a~~~------~~~~~l~LsgGstP~~~y~~L~~~~----~---------~idw~~v~~f~~DEr~vp~~~~ 85 (251)
T 3tx2_A 25 DRLASAITGALAE------RGKAMIVLTGGGTGIALLKHLRDVA----S---------GLDWTNVHVFWGDDRYVPKTDP 85 (251)
T ss_dssp HHHHHHHHHHHHH------HSCEEEEECCSHHHHHHHHHHHHHH----T---------TSCGGGEEEEESEEESSCTTCT
T ss_pred HHHHHHHHHHHHh------CCCEEEEECCCchHHHHHHHHHhhc----c---------CCCCceeEEEeeeeccCCCCCh
Confidence 3455555655543 3479999999987677777776531 1 1134 68899999976443332
Q ss_pred chhHHHHHHHHHH
Q 012855 142 SEIDNAIQEIKLI 154 (455)
Q Consensus 142 ~e~~~~~~~v~~~ 154 (455)
+.....+++.
T Consensus 86 ---~Sn~~~~~~~ 95 (251)
T 3tx2_A 86 ---ERNAWQAWEA 95 (251)
T ss_dssp ---TCHHHHHHHH
T ss_pred ---HHHHHHHHHH
Confidence 2344455543
No 96
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=29.02 E-value=12 Score=28.90 Aligned_cols=13 Identities=38% Similarity=0.767 Sum_probs=10.5
Q ss_pred cccCcccCCCCCc
Q 012855 363 ESFCSLCYSPLNQ 375 (455)
Q Consensus 363 ~~~C~lC~~~ld~ 375 (455)
-..||+||.|||-
T Consensus 8 ~~~~PlCG~~L~W 20 (95)
T 2k5c_A 8 MAKCPICGSPLKW 20 (95)
T ss_dssp CEECSSSCCEECH
T ss_pred cccCCcCCCccCH
Confidence 4579999999953
No 97
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=29.01 E-value=77 Score=29.00 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYP 138 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~ 138 (455)
++|...++..+.+ +.+..||||||..=..|...|.+. ...| +++++++||-.+.+
T Consensus 20 ~~i~~~i~~~i~~------~~~~~l~lsgGstp~~~y~~L~~~---------------~i~w~~v~~f~~DEr~vp~ 75 (232)
T 3lhi_A 20 DAVADALQGALDE------KGGAVLAVSGGRSPIAFFNALSQK---------------DLDWKNVGITLADERIVPT 75 (232)
T ss_dssp HHHHHHHHHHHHH------HSCEEEEECCSSTTHHHHHHHHTS---------------CCCGGGEEEEESEEESSCT
T ss_pred HHHHHHHHHHHHh------CCCEEEEEeCCCCHHHHHHHHHhc---------------CCCchheEEEEeeeccCCC
Confidence 3455555665543 347999999998877777776521 1234 68899999975443
No 98
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=28.40 E-value=1.1e+02 Score=28.47 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=31.3
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce--EEEEEEEeCCCCCC
Q 012855 81 PADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF--GVGVVFVDETAYYP 138 (455)
Q Consensus 81 ~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f--~l~vv~VD~~~~~~ 138 (455)
.+.+..||||||..=..|...|.+..+.. . .| +++++++||-.+.+
T Consensus 34 ~~~~~~l~LsgGstP~~ly~~L~~~~~~~---i---------dw~~~v~~f~~DEr~vp~ 81 (266)
T 3eb9_A 34 QQWPLSIALAGGSTPKMTYARLHDEHLNL---L---------REKRALRFFMGDERMVPA 81 (266)
T ss_dssp GGCSEEEEECCSHHHHHHHHHHHHHHHHH---H---------TTSCCEEEEESEEESSCT
T ss_pred hCCCEEEEEcCCCCHHHHHHHHHHHhhcC---C---------ChHHcEEEEeeeeeccCC
Confidence 35689999999987777777776432211 1 23 57899999975443
No 99
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=27.90 E-value=3.7e+02 Score=25.34 Aligned_cols=102 Identities=9% Similarity=0.066 Sum_probs=62.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
.-||+|-+||+- ..|-.+|..... +....++.+|.-|+.. ++.+++++
T Consensus 90 ~~ri~vl~Sg~g--~~l~~ll~~~~~------------g~l~~~i~~Visn~~~---------------~~~~A~~~--- 137 (286)
T 3n0v_A 90 RPKVVIMVSKAD--HCLNDLLYRQRI------------GQLGMDVVAVVSNHPD---------------LEPLAHWH--- 137 (286)
T ss_dssp CCEEEEEESSCC--HHHHHHHHHHHT------------TSSCCEEEEEEESSST---------------THHHHHHT---
T ss_pred CcEEEEEEeCCC--CCHHHHHHHHHC------------CCCCcEEEEEEeCcHH---------------HHHHHHHc---
Confidence 348999999984 466667765421 1124677777766531 23346676
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhc
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVK 241 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~ 241 (455)
|+|++.+|... .++.+.- .-+.+.-++++.+.|++.--+.-+-..+|... +
T Consensus 138 gIp~~~~~~~~-----------------------~~r~~~~-----~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~-~ 188 (286)
T 3n0v_A 138 KIPYYHFALDP-----------------------KDKPGQE-----RKVLQVIEETGAELVILARYMQVLSPELCRRL-D 188 (286)
T ss_dssp TCCEEECCCBT-----------------------TBHHHHH-----HHHHHHHHHHTCSEEEESSCCSCCCHHHHHHT-T
T ss_pred CCCEEEeCCCc-----------------------CCHHHHH-----HHHHHHHHhcCCCEEEecccccccCHHHHhhh-c
Confidence 79998876531 1222211 12335556789999999988877777777654 4
Q ss_pred cCC
Q 012855 242 GRG 244 (455)
Q Consensus 242 GrG 244 (455)
|+.
T Consensus 189 ~~~ 191 (286)
T 3n0v_A 189 GWA 191 (286)
T ss_dssp TSE
T ss_pred CCe
Confidence 443
No 100
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.60 E-value=36 Score=24.42 Aligned_cols=28 Identities=25% Similarity=0.650 Sum_probs=17.3
Q ss_pred cccccCCCCC--ceecC-CCCCCcHHHHHHHH
Q 012855 37 LCVKCKANEP--TPGAG-EDGKHCLDCFRSNL 65 (455)
Q Consensus 37 ~C~kCk~~~a--v~~~r-~~~~~C~~CF~~~i 65 (455)
.|..|+..-. .+..+ +.. ||..||.+.+
T Consensus 33 ~C~~C~~~L~~~~~~~~~~~~-yC~~cy~~~f 63 (69)
T 2cur_A 33 VCVTCSKKLAGQRFTAVEDQY-YCVDCYKNFV 63 (69)
T ss_dssp BCTTTCCBCTTSCEEECSSCE-EEHHHHHHHH
T ss_pred EECCCCCCCCCCccEeECCEE-ECHHHhHHHh
Confidence 5777765321 24444 555 9999997654
No 101
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=26.25 E-value=72 Score=28.90 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=27.3
Q ss_pred EEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEe
Q 012855 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVD 132 (455)
Q Consensus 84 kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD 132 (455)
+|||+++|+..|..++.....+.... +-+++++||-
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~-------------~a~l~ll~v~ 37 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKL-------------SAPLTVLFVV 37 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHH-------------TCCEEEEEEE
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHh-------------CCcEEEEEEe
Confidence 79999999999998887776654321 3477888874
No 102
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.18 E-value=14 Score=29.94 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=11.0
Q ss_pred cccCcccCCCCCc
Q 012855 363 ESFCSLCYSPLNQ 375 (455)
Q Consensus 363 ~~~C~lC~~~ld~ 375 (455)
+..||+||.++++
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4579999999975
No 103
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=26.15 E-value=94 Score=28.73 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPS 141 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~ 141 (455)
++|...++.++.+ +.+..||||||..=..++..|.+.. .. ..| +++++++||-.+.+..+
T Consensus 25 ~~i~~~i~~~~~~------~~~~~l~LsgGstP~~~y~~L~~~~----~~---------idw~~v~~f~~DEr~vp~~~~ 85 (248)
T 3oc6_A 25 DRLVDAISSAIGE------RGQATIVLTGGGTGIGLLKRVRERS----GE---------IDWSKVHIYWGDERFVPQDDD 85 (248)
T ss_dssp HHHHHHHHHHHHH------HSCEEEEECCSHHHHHHHHHHHHTG----GG---------SCGGGEEEEESEEECSCTTCT
T ss_pred HHHHHHHHHHHHh------CCCEEEEECCCccHHHHHHHHHhhc----cC---------CCcceEEEEEeeeccCCCCCh
Confidence 4455555655543 3479999999987677777766421 10 133 68899999975443322
Q ss_pred chhHHHHHHHHHH
Q 012855 142 SEIDNAIQEIKLI 154 (455)
Q Consensus 142 ~e~~~~~~~v~~~ 154 (455)
+.....+++.
T Consensus 86 ---~Sn~~~~~~~ 95 (248)
T 3oc6_A 86 ---ERNDKQAREA 95 (248)
T ss_dssp ---TCHHHHHHHH
T ss_pred ---HHHHHHHHHH
Confidence 2344455543
No 104
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=25.88 E-value=1.1e+02 Score=28.80 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCce-EEEEEEEeCCCCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVF-GVGVVFVDETAYYPVPS 141 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f-~l~vv~VD~~~~~~~s~ 141 (455)
++|...++.++.+ +.+..||||||..=..++..|.+.. .. ..| +++++++||-.+.+..+
T Consensus 41 ~~i~~~i~~ai~~------~~~~~l~LsgGstP~~~y~~L~~~~----~~---------idw~~v~~f~~DEr~vp~~~~ 101 (268)
T 3ico_A 41 KRLVGAIGAAVAA------RGQALIVLTGGGNGIALLRYLSAQA----QQ---------IEWSKVHLFWGDERYVPEDDD 101 (268)
T ss_dssp HHHHHHHHHHHHH------HSCEEEEECCSHHHHHHHHHHHHHG----GG---------SCGGGEEEEESEEECSCTTCT
T ss_pred chhhhHhHHHHHh------cCceEEEEecCCchhHHHHHHHHHh----hh---------hhheeeEEeecccccCCCCcc
Confidence 4455555555543 3479999999987677777776531 11 134 68899999976443332
Q ss_pred chhHHHHHHHHHH
Q 012855 142 SEIDNAIQEIKLI 154 (455)
Q Consensus 142 ~e~~~~~~~v~~~ 154 (455)
+.....+++.
T Consensus 102 ---~Sn~~~~~~~ 111 (268)
T 3ico_A 102 ---ERNLKQARRA 111 (268)
T ss_dssp ---TCHHHHHHHH
T ss_pred ---hhHHHHHHHH
Confidence 2344555543
No 105
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=25.51 E-value=14 Score=33.52 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=19.6
Q ss_pred ccCccccccCCCCCce---ecCCCCCCcHHHHHH
Q 012855 33 NEQNLCVKCKANEPTP---GAGEDGKHCLDCFRS 63 (455)
Q Consensus 33 ~~~~~C~kCk~~~av~---~~r~~~~~C~~CF~~ 63 (455)
.....|.+|++.-+.. ...+.. +|++||.+
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~g~~-~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLNGKP-VCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEETTEE-ECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeCCcE-EChhhhcc
Confidence 3456799999743221 122666 99999954
No 106
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=25.46 E-value=81 Score=25.16 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=19.4
Q ss_pred CEEEEEecCCccHHHHHH-HHHHHH
Q 012855 83 DNVLVAFSGGPSSRVALQ-FVHELQ 106 (455)
Q Consensus 83 ~kVLValSGG~dS~vLL~-lL~~l~ 106 (455)
.||||++++|..|+.|+. -|.+..
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~ 43 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENAL 43 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHH
Confidence 479999999999988887 666543
No 107
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=25.03 E-value=4.2e+02 Score=24.64 Aligned_cols=127 Identities=13% Similarity=0.213 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEecCC---ccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCC
Q 012855 63 SNLFGKFRLAVASNALITPADNVLVAFSGG---PSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPV 139 (455)
Q Consensus 63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG---~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~ 139 (455)
+-+..+++.++... |+-.-+-=.=|+ .|.-+|-+++..+.+. + .++||.++ .+.
T Consensus 110 ~ei~~~l~~al~~v----P~a~GvnNHmGS~~T~~~~~M~~vm~~L~~~--------------g----L~FlDS~T-s~~ 166 (261)
T 2qv5_A 110 KVNIDRLHRSMAKI----TNYTGVMNYLGGRFLAEQSALEPVMRDIGKR--------------G----LLFLDDGS-SAQ 166 (261)
T ss_dssp HHHHHHHHHHHTTC----CCCSEEEEEECTTGGGCHHHHHHHHHHHHHT--------------T----CEEEECSC-CTT
T ss_pred HHHHHHHHHHHHHC----CCcEEEecccccchhcCHHHHHHHHHHHHHC--------------C----CEEEcCCC-Ccc
Confidence 45666676666431 222222222343 3556777777766431 2 46888775 333
Q ss_pred CCchhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 012855 140 PSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGY 219 (455)
Q Consensus 140 s~~e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~ 219 (455)
|. +.+.++++ |+++-... +| .+ ...+...+.+.|.+ +..+|+++|
T Consensus 167 S~---------a~~~A~~~---gvp~~~rd---vF-LD----------------~~~~~~~I~~qL~~--a~~~Ar~~G- 211 (261)
T 2qv5_A 167 SL---------SGGIAKAI---SAPQGFAD---VL-LD----------------GEVTEASILRKLDD--LERIARRNG- 211 (261)
T ss_dssp CC---------HHHHHHHH---TCCEEECS---EE-TT----------------SSCSHHHHHHHHHH--HHHHHHHHS-
T ss_pred cH---------HHHHHHHc---CCCeEEee---ee-cC----------------CCCCHHHHHHHHHH--HHHHHHhcC-
Confidence 31 34556666 67775432 23 11 12233444444433 458899998
Q ss_pred cEEEcccchhHHHHHHHHHH--hccCCCCC
Q 012855 220 NRLLLGLCTSRIACHVITAT--VKGRGYSL 247 (455)
Q Consensus 220 ~~l~lGh~~ddlAet~L~nl--~~GrG~sl 247 (455)
..|++||-...-.+.+...+ .+.+|..+
T Consensus 212 ~AIaIGhp~p~Ti~aL~~~~~~l~~~gi~L 241 (261)
T 2qv5_A 212 QAIGVASAFDESIAAISKWSREAGGRGIEI 241 (261)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHGGGGTEEE
T ss_pred cEEEEeCCCHHHHHHHHHHhhhhhhCCeEE
Confidence 78999998876554433333 23445443
No 108
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.95 E-value=35 Score=25.37 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=16.6
Q ss_pred cccccCCCCC--ceecC-CCCCCcHHHHHHHH
Q 012855 37 LCVKCKANEP--TPGAG-EDGKHCLDCFRSNL 65 (455)
Q Consensus 37 ~C~kCk~~~a--v~~~r-~~~~~C~~CF~~~i 65 (455)
.|..|+..-. .+..+ +.. ||+.||.+.+
T Consensus 43 ~C~~C~~~L~~~~~~~~~g~~-yC~~cy~~~~ 73 (79)
T 1x62_A 43 VCTDCGTNLKQKGHFFVEDQI-YCEKHARERV 73 (79)
T ss_dssp SCSSSCCCHHHHCCEESSSCE-ECHHHHHHHH
T ss_pred eeCCCCCCCCCCCeEeECCEE-ECHHHHHHHh
Confidence 4667765421 13334 555 9999996543
No 109
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=24.39 E-value=87 Score=26.31 Aligned_cols=46 Identities=11% Similarity=0.032 Sum_probs=36.4
Q ss_pred ccccHHHHHHHHHHcCCCcccccCCCCCcHHHHHHHHHHHHHHhCC
Q 012855 267 RDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQEENP 312 (455)
Q Consensus 267 rdl~~kEI~~Y~~~~~L~~~~~~~~~~~Si~~l~~~fi~~Le~~~P 312 (455)
+.+..+|+..|+...+++++......+..++.+...++..+.+++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 4567899999999999988875555667788888888888777665
No 110
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.03 E-value=45 Score=24.05 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=17.2
Q ss_pred cccccCCCCC--ceecC-CCCCCcHHHHHHHH
Q 012855 37 LCVKCKANEP--TPGAG-EDGKHCLDCFRSNL 65 (455)
Q Consensus 37 ~C~kCk~~~a--v~~~r-~~~~~C~~CF~~~i 65 (455)
.|..|+..-. .+..+ +.. ||+.||.+.+
T Consensus 35 ~C~~C~~~L~~~~~~~~~~~~-yC~~cy~~~~ 65 (72)
T 1x61_A 35 VCSTCRAQLRGQHFYAVERRA-YCEGCYVATL 65 (72)
T ss_dssp BCSSSCCBCTTSCEEESSSCE-EEHHHHHHHH
T ss_pred cccccCCcCCcCcCEeeCCeE-ECHHHHHHHH
Confidence 4667765422 23344 555 9999997654
No 111
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.72 E-value=31 Score=28.43 Aligned_cols=27 Identities=15% Similarity=0.189 Sum_probs=17.0
Q ss_pred cccccCCCCC----ceecC-CCCCCcHHHHHHH
Q 012855 37 LCVKCKANEP----TPGAG-EDGKHCLDCFRSN 64 (455)
Q Consensus 37 ~C~kCk~~~a----v~~~r-~~~~~C~~CF~~~ 64 (455)
+|..|+..-. .+..+ +.. ||+.||.+.
T Consensus 90 ~C~~C~~~L~~~g~~f~~~dg~~-yC~~cy~~~ 121 (123)
T 2l4z_A 90 KCSSCQAQLGDIGTSSYTKSGMI-LCRNDYIRL 121 (123)
T ss_dssp BCTTTCCBGGGTTCCCBCSSSCC-BCHHHHHHH
T ss_pred CcCcCCCcccccCCceEEECCEE-eCHHHhhhh
Confidence 5777765421 23444 555 999999764
No 112
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=23.72 E-value=4.7e+02 Score=24.69 Aligned_cols=102 Identities=9% Similarity=0.073 Sum_probs=62.3
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPP 161 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~ 161 (455)
..||+|-+||+- +.|-.+|..... +....++.+|.-|+.. ++.+++++
T Consensus 95 ~~ri~vl~Sg~g--~~l~~ll~~~~~------------g~l~~~i~~Visn~~~---------------~~~~A~~~--- 142 (292)
T 3lou_A 95 RPKVLIMVSKLE--HCLADLLFRWKM------------GELKMDIVGIVSNHPD---------------FAPLAAQH--- 142 (292)
T ss_dssp CCEEEEEECSCC--HHHHHHHHHHHH------------TSSCCEEEEEEESSST---------------THHHHHHT---
T ss_pred CCEEEEEEcCCC--cCHHHHHHHHHc------------CCCCcEEEEEEeCcHH---------------HHHHHHHc---
Confidence 348999999984 366677765432 1124677777766531 12456776
Q ss_pred CCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhc
Q 012855 162 TKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVK 241 (455)
Q Consensus 162 ~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~ 241 (455)
|+|++.+|... .++.+.- .-+.+.-++++.+.|++..-+.-+-..+|... .
T Consensus 143 gIp~~~~~~~~-----------------------~~r~~~~-----~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~-~ 193 (292)
T 3lou_A 143 GLPFRHFPITA-----------------------DTKAQQE-----AQWLDVFETSGAELVILARYMQVLSPEASARL-A 193 (292)
T ss_dssp TCCEEECCCCS-----------------------SCHHHHH-----HHHHHHHHHHTCSEEEESSCCSCCCHHHHHHT-T
T ss_pred CCCEEEeCCCc-----------------------CCHHHHH-----HHHHHHHHHhCCCEEEecCchhhCCHHHHhhh-c
Confidence 79998776531 1222211 12345556789999999988877777777654 4
Q ss_pred cCC
Q 012855 242 GRG 244 (455)
Q Consensus 242 GrG 244 (455)
|+.
T Consensus 194 ~~~ 196 (292)
T 3lou_A 194 NRA 196 (292)
T ss_dssp TSE
T ss_pred CCe
Confidence 443
No 113
>1tqe_X Histone deacetylase 9; MEF2, HDAC, CO-repressor, transcription, transcription/protein binding/DNA complex; 2.70A {Mus musculus}
Probab=23.47 E-value=23 Score=21.02 Aligned_cols=15 Identities=40% Similarity=0.767 Sum_probs=11.6
Q ss_pred hHHHHHHhhhhcCCC
Q 012855 436 SSLLREQIQDFLLSD 450 (455)
Q Consensus 436 ~~~m~~~i~~~ll~~ 450 (455)
-.++++.+|||||.-
T Consensus 8 SteVKqkLqefll~K 22 (26)
T 1tqe_X 8 STEVKQKLQEFLLSK 22 (26)
T ss_dssp CSSHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhh
Confidence 346788999999864
No 114
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=22.93 E-value=88 Score=29.16 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=29.2
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeC
Q 012855 82 ADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDE 133 (455)
Q Consensus 82 g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~ 133 (455)
-.+|||++.|+..|..++.....+.... +-++.++||-+
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~-------------~a~l~ll~v~~ 57 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELR-------------KIPLTLVHAVS 57 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHH-------------TCCEEEEEECC
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhc-------------CCcEEEEEEec
Confidence 4689999999999988887766654321 45788999854
No 115
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.53 E-value=40 Score=24.23 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=16.9
Q ss_pred cccccCCCCC--ceecC-CCCCCcHHHHHHHH
Q 012855 37 LCVKCKANEP--TPGAG-EDGKHCLDCFRSNL 65 (455)
Q Consensus 37 ~C~kCk~~~a--v~~~r-~~~~~C~~CF~~~i 65 (455)
.|..|+..-. .+..+ +.. ||+.||.+.+
T Consensus 33 ~C~~C~~~L~~~~f~~~~g~~-yC~~c~~~~~ 63 (70)
T 2d8x_A 33 RCDLCQEVLADIGFVKNAGRH-LCRPCHNREK 63 (70)
T ss_dssp BCSSSCCBCSSSCCEEETTEE-ECHHHHHHHH
T ss_pred EeCCCCCcCCCCccEeECCeE-ECHHHhhhhc
Confidence 5677765322 23333 555 9999997654
Done!