RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012855
(455 letters)
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 216
Score = 35.7 bits (81), Expect = 0.006
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNF 113
S + K + + VL+AFSGG S V + +L+
Sbjct: 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKE 55
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 33.2 bits (74), Expect = 0.048
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 76 NALITPADNVLVAFSGGPSSRVALQFVHELQQRAQK 111
N + + +LVAFSGG S V L + + +
Sbjct: 7 NRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPG 42
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 31.6 bits (70), Expect = 0.10
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 83 DNVLVAFSGGPSSRVALQFVHELQ 106
+ V++A+SGG + V L+++ E
Sbjct: 2 EKVVLAYSGGLDTSVILKWLCEKG 25
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 30.8 bits (68), Expect = 0.26
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 13/103 (12%)
Query: 83 DNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSS 142
DN ++ +S G S V L + + F V+ VD +
Sbjct: 27 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFP-------------VMHVDTRWKFQEMYR 73
Query: 143 EIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERF 185
D ++E+ L + P I + + D +
Sbjct: 74 FRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTE 116
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 147
Score = 29.9 bits (66), Expect = 0.33
Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 14/126 (11%)
Query: 84 NVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSE 143
V+V G SS A+ ++ K AS + + +Y ++
Sbjct: 7 TVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAP 66
Query: 144 IDNAIQEIKLIVSNLSPPTKELHVI---PIESIFCSNPC----------DGRERFKK-LV 189
I + + K N E I P++++ G L+
Sbjct: 67 IYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLL 126
Query: 190 DSVSDA 195
SV
Sbjct: 127 GSVPAN 132
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 29.7 bits (65), Expect = 0.48
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 85 VLVAFSGGPSSRVALQFVHEL 105
+++A+SGG + + L+++ E
Sbjct: 3 IVLAYSGGLDTSIILKWLKET 23
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 27.6 bits (60), Expect = 3.0
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 85 VLVAFSGGPSSRVALQFVHEL 105
V+V SGG S VA +
Sbjct: 7 VMVLLSGGIDSPVAAYLTMKR 27
>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 26.4 bits (58), Expect = 4.8
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 403 FQIFPKDPSSMEKFYSLLPEPLVARAKHVRNGDSSLLREQIQDFLLS 449
+ K + + Y A V NG++ +E + +F
Sbjct: 24 YTTMDKRRRLLSRLYM-------GTATLVWNGNAVSGQESLSEFFEM 63
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2)
{Cryptosporidium parvum [TaxId: 5807]}
Length = 117
Score = 26.0 bits (57), Expect = 5.8
Identities = 5/47 (10%), Positives = 13/47 (27%), Gaps = 7/47 (14%)
Query: 403 FQIFPKDPSSMEKFYSLLPEPLVARAKHVRNGDSSLLREQIQDFLLS 449
+Q F + ++ Y ++ + I + S
Sbjct: 13 YQTFQTNRPALGGLYG-------PQSMLTWEDTQFQGQANIVNKFNS 52
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus
influenzae [TaxId: 727]}
Length = 140
Score = 26.1 bits (56), Expect = 5.8
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 84 NVLVAFSGGPSSRVALQFVHELQQR 108
++LVA S + L+ + +R
Sbjct: 4 HILVAVDLSEESPILLKKAVGIAKR 28
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 26.1 bits (56), Expect = 6.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 85 VLVAFSGGPSSRVALQFVHE 104
+ +AFSGG + AL ++ +
Sbjct: 13 IGIAFSGGLDTSAALLWMRQ 32
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus
thermophilus [TaxId: 274]}
Length = 135
Score = 26.0 bits (56), Expect = 6.9
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 84 NVLVAFSGGPSSRVALQFVHELQQR 108
+L+A+ G +R A + +
Sbjct: 3 TILLAYDGSEHARRAAEVAKAEAEA 27
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 121
Score = 25.6 bits (56), Expect = 7.5
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 403 FQIFPKDPSSMEKFYSLLPEPLVARAKHVRNGDSSLLREQIQDFLLS 449
+ F D S + Y E ++ + I + L+S
Sbjct: 14 YNQFDTDRSQLGNLYR--NESML-----TFETSQLQGAKDIVEKLVS 53
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 25.1 bits (54), Expect = 8.3
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 358 ESISSESFCSLCYSPLNQSDLTSLSSHDNCKNS-DIFVAACCSSCRFQIFPKDP 410
+ + CS C + L + H C N + C C + +D
Sbjct: 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDL 70
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 125
Score = 25.2 bits (55), Expect = 9.8
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 403 FQIFPKDPSSMEKFYSLLPEPLVARAKHVRNGDSSLLREQIQDFLLS 449
+Q+F D + + Y + G + I + L S
Sbjct: 17 YQLFDNDRTQLGAIYI-------DASCLTWEGQQFQGKAAIVEKLSS 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,605,522
Number of extensions: 73569
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 20
Length of query: 455
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,199,356
Effective search space: 440163652
Effective search space used: 440163652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)