BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012856
(455 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/437 (88%), Positives = 413/437 (94%)
Query: 16 HGLFRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLST 75
L R+L+IL ALG F+LKL IDQ+ G L++N +KRA ELRRIFTRLGPTFVKLGQGLST
Sbjct: 111 KALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRRIFTRLGPTFVKLGQGLST 170
Query: 76 RPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQV 135
RPD+CPP+YLEEL+ELQDALPTFPDAEAF+CIEREL L+L++IFSS+SP PIAAASLGQV
Sbjct: 171 RPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPEPIAAASLGQV 230
Query: 136 YKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDVVALIDEFASR 195
YKAQL+YSGQ+VAVKVQRPGIEEAIGLDFYLIRGVG LINKYVD ITTDV+ LIDEFA R
Sbjct: 231 YKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKYVDFITTDVLTLIDEFACR 290
Query: 196 VYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIES 255
VYQELNYVQE QNARRFKKLYADK DVLVPDIFWDYTS KVLTMEWVEG KLNEQ+AIES
Sbjct: 291 VYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWVEGTKLNEQLAIES 350
Query: 256 QGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEEARF 315
QGLKVLDLVNTGIQCSLRQLLEYG+FHADPHPGNLLATP+GKLAFLDFGMMSETPEEARF
Sbjct: 351 QGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDGKLAFLDFGMMSETPEEARF 410
Query: 316 AIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTI 375
AIIGHVVH+VNRDYEAMARDYYAL FLSPDVDVTPI+PALR+FFDDALN +VSELNFKT+
Sbjct: 411 AIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDFFDDALNYTVSELNFKTL 470
Query: 376 VDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
VDGLGAV YQYPFNVP YYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP
Sbjct: 471 VDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 530
Query: 436 YLRDALVELLFKDGRFR 452
YLRDAL+ELLFKDG+FR
Sbjct: 531 YLRDALIELLFKDGKFR 547
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/435 (53%), Positives = 312/435 (71%), Gaps = 1/435 (0%)
Query: 18 LFRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRP 77
L R + IL L F L + ++ G R +A +LR + T LGPT++K+GQ LSTRP
Sbjct: 70 LGRLINILFPLLRFILGIWWEKLRGKDPTVSRAKAIQLRELLTNLGPTYIKVGQALSTRP 129
Query: 78 DICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYK 137
D+ PP +L+EL+ LQD LP+FP+ A+ IE ELG + I++ +SP PIAAASLGQVYK
Sbjct: 130 DLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYK 189
Query: 138 AQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDVVALIDEFASRVY 197
+LK +G+ VAVKVQRP + I LD Y++R + + V + +D+VA+ DE ASRV+
Sbjct: 190 GKLK-TGEAVAVKVQRPDLVRRITLDIYIMRSLSLWARRSVKRLRSDLVAITDELASRVF 248
Query: 198 QELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQG 257
+E+NY QE N +F +LY ++ VP I+W YT +VLTMEWVEG+KL AI++QG
Sbjct: 249 EEMNYYQEAINGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQG 308
Query: 258 LKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEEARFAI 317
+ LV G+QCSLRQLLE+G+FHADPHPGNLLA +G+LA+LDFGMMS R+ +
Sbjct: 309 IDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAMADGRLAYLDFGMMSTIQPYQRYGL 368
Query: 318 IGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVD 377
I VVH+VNRD++++A+DY LDFL PD D+ PI+PAL F +AL +SV+ELNFK+I D
Sbjct: 369 IEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASVAELNFKSITD 428
Query: 378 GLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYL 437
+ A++Y++PF VPAYYALI+RS+ LEG+A+ DPNFKVL+ +YPY AKRLLTD + L
Sbjct: 429 QMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVLSKAYPYIAKRLLTDQSEEL 488
Query: 438 RDALVELLFKDGRFR 452
R +L ELLFK+G FR
Sbjct: 489 RTSLKELLFKEGSFR 503
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/436 (46%), Positives = 300/436 (68%), Gaps = 2/436 (0%)
Query: 18 LFRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRP 77
L+R L+++ + G F LL DQ G ++ KR+RA +LR + T+LGPTF+K+GQ LSTRP
Sbjct: 36 LWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAEDLRELLTKLGPTFIKVGQALSTRP 95
Query: 78 DICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYK 137
D+ ++LEEL +LQD LP F + AF +E +LG+ +D + IS P+AAASLGQVY+
Sbjct: 96 DLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKVDEAYREISAHPVAAASLGQVYR 155
Query: 138 AQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYVDI-ITTDVVALIDEFASRV 196
A L +SG+ VAVKVQRP + + LD YL+R +++ + + D+ ++DEF ++
Sbjct: 156 AML-FSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFGRFLPLNLGHDLTLIVDEFGIKL 214
Query: 197 YQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQ 256
++E++Y+ EG+NA +F + + +V VP I+W Y++ KVLT+EW++G KL + I +
Sbjct: 215 FEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIRAA 274
Query: 257 GLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEEARFA 316
GL D++ G+ LRQLLE+G+FHADPHPGNL AT +G++A++DFGMM + +
Sbjct: 275 GLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMDQLEPGTKET 334
Query: 317 IIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIV 376
I +V ++N+DY A+ D+ AL FL+P+ D+TPI+PAL N F A+ SV + NFKTI
Sbjct: 335 IASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPALENVFGSAIGQSVQDFNFKTIT 394
Query: 377 DGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPY 436
D ++Y YPF VPA +ALI+RSL EGLAL DPNFK++ +YPY A+RLLT +P
Sbjct: 395 DDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVARRLLTGESPQ 454
Query: 437 LRDALVELLFKDGRFR 452
LR L+++LFK+G+F+
Sbjct: 455 LRRQLIDVLFKNGKFQ 470
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/408 (47%), Positives = 284/408 (69%), Gaps = 9/408 (2%)
Query: 45 DQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAF 104
DQ + RAAELR++ LGP +VK+ Q +S+RPD+ PP YL+ELS LQD + F AF
Sbjct: 113 DQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELSLLQDQITPFSTEVAF 172
Query: 105 SCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDF 164
+ IE ELGL +D +FS ISP P+AAASLGQVY+A+L+ SG++VAVKVQRPG+ AI LD
Sbjct: 173 NMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAVKVQRPGVRAAIALDT 232
Query: 165 YLIRGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLV 224
++R + LI K +D+ A++DE+A+ +++E++Y+ E QN +F+KLY +DVLV
Sbjct: 233 LILRYIAGLIKK-AGRFNSDLEAVVDEWATSLFKEMDYLNEAQNGIKFRKLYGGIKDVLV 291
Query: 225 PDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHAD 284
P ++ +Y++ KVL MEWVEG KLNE + L LV G+ CS QLLEYG++HAD
Sbjct: 292 PKMYTEYSTSKVLVMEWVEGQKLNE--------VNDLYLVEVGVYCSFNQLLEYGFYHAD 343
Query: 285 PHPGNLLATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSP 344
PHPGN L T +G+LA+LDFGMM + E R + +H+VNRD++A+A+D+ L L P
Sbjct: 344 PHPGNFLRTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPP 403
Query: 345 DVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVL 404
+ + + AL + F DA++ V ++F ++ LG +Y++ F +P Y++L++RSL VL
Sbjct: 404 TAEKSAVTKALTDVFQDAISRGVRNISFGDLLGDLGKTMYRFKFRIPPYFSLVIRSLAVL 463
Query: 405 EGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALVELLFKDGRFR 452
EG+A+ PN+KVL ++YP+ A+++LTD +P L+ +L LL+++G FR
Sbjct: 464 EGIAIGISPNYKVLGSTYPWIARKILTDSSPQLKSSLQNLLYEEGVFR 511
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 355 bits (912), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 175/434 (40%), Positives = 271/434 (62%), Gaps = 1/434 (0%)
Query: 20 RTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDI 79
R ++I+ LG + L D G ++ RA +LR + LGP+F+K GQ L+ RPDI
Sbjct: 135 RGVEIVWTLGLYWSTLTYDFLVGRDEEVVPFRARQLRNLLCNLGPSFIKAGQVLANRPDI 194
Query: 80 CPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQ 139
+Y+ EL LQD +P FP+ AF+ IE ELG L++IFS IS IAAASLGQVY+A
Sbjct: 195 IREDYMNELCILQDDVPPFPNEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRAT 254
Query: 140 LKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKY-VDIITTDVVALIDEFASRVYQ 198
L+ +G+ VA+KVQRP IE I D +L R + +N + + + + ++DEF ++ +
Sbjct: 255 LRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFLNGFSLQKLGCNAELIVDEFGEKLLE 314
Query: 199 ELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGL 258
EL+Y E +N F + + D V +P ++ + +VL MEW++G++ + AI+ G+
Sbjct: 315 ELDYTLEARNIEDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGI 374
Query: 259 KVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEEARFAII 318
+ + G+ +LRQLLE+G FH DPHPGN+ A +G++A++DFG ++ ++ + +I
Sbjct: 375 DLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQNKQILI 434
Query: 319 GHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDG 378
VVH VN DY MA D+ L FL+ D DV+PIVPAL + ++ +++ NF+++
Sbjct: 435 DAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSVTGQ 494
Query: 379 LGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLR 438
++Y +P +P ++L++RSL EG+ P+FK L +YPY AKRLLTDPNP LR
Sbjct: 495 FNKLVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALR 554
Query: 439 DALVELLFKDGRFR 452
+ L+++LFKDG F+
Sbjct: 555 ERLIQVLFKDGVFQ 568
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 271 bits (693), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 143/395 (36%), Positives = 236/395 (59%), Gaps = 4/395 (1%)
Query: 44 LDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEA 103
L Q +R++A +R LGPTF+K+GQ STR D+ P EY+EELS+LQD +P F +A
Sbjct: 77 LQQRRRRQAKWIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQA 136
Query: 104 FSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLD 163
IE ELG + ++ S P P+AAASLGQV+KAQL ++G+ V VKVQRPG+++ +D
Sbjct: 137 AGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQL-HTGEDVVVKVQRPGLKKLFTID 195
Query: 164 FYLIRGVG-FLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 222
+++ + + N D + +E ++QE +Y++EG++A F++ + ++ V
Sbjct: 196 LAILKKIAQYFQNHPKWGRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWV 255
Query: 223 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 282
VP ++W YTS ++LT+E++ G+K++ A+E+ GL+ +L G + L QLL +G+FH
Sbjct: 256 KVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFH 315
Query: 283 ADPHPGNLLATPE-GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDF 341
ADPHPGNL +PE G+L F DFGMM E + + ++ + + ++ E + AL
Sbjct: 316 ADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGA 375
Query: 342 LSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSL 401
L D+ PI +++ D+ ++ E + I D L + Y PF PA + ++R+
Sbjct: 376 LKETEDMGPIRRSVQFLLDNFMDKPFEEQSITKISDDLYEIAYDQPFRFPATFTFVMRAF 435
Query: 402 TVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPY 436
+ LEG+ DP+F +A + P FA +++ + N +
Sbjct: 436 STLEGVGKGLDPDFNFMAVAQP-FALQIMNNSNGF 469
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 235/403 (58%), Gaps = 6/403 (1%)
Query: 46 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 105
Q + +RA L + LGPTF+K+GQ LSTR DI P EY+E ++LQD +P F +A +
Sbjct: 52 QRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIA 111
Query: 106 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFY 165
IE+EL +D IF +P+A+ASLGQV++A L +G+ V VKVQRPG++ + LDF
Sbjct: 112 VIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVLP-TGEAVVVKVQRPGLDSLLNLDFE 170
Query: 166 LIRGVGFLINKYVDIITT-----DVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 220
L+ L +++ ++ A+ EF S ++ E++Y+ EG+NA RF++ +AD
Sbjct: 171 LLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADYP 230
Query: 221 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 280
V VP+I+W YT+ VLT+E++ G+K++++ A+E+ G+ + ++ TGI L+QLL G+
Sbjct: 231 RVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGF 290
Query: 281 FHADPHPGNLLATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALD 340
F +DPHPGN+ +G L F DFG M+E A+ ++ ++ +D + +
Sbjct: 291 FQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMG 350
Query: 341 FLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRS 400
+ P D++PI + D+ + + F + + + A+ Q PF +P IL+S
Sbjct: 351 LVEPKGDLSPIKRIINFLLDNFRDKPIDIKAFDQVGEEVYAMFQQQPFRLPPQMTFILKS 410
Query: 401 LTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALVE 443
++ L+G+A DP + ++AAS P+ + P L AL++
Sbjct: 411 ISTLDGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQ 453
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 206/379 (54%), Gaps = 2/379 (0%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
A LR LGP F+K GQ LSTRPD+ P +Y EL++LQD +P F + IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIR-GV 170
G +++ +++ PIA+AS+ QV+KA+L +SG+ VAVKV RP + I D L+R G
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGEQVAVKVLRPNLLPVIEQDLSLMRFGA 169
Query: 171 GFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWD 230
G++ + D ++ EF ++ EL+ ++E NA + + + + + ++VP +F+D
Sbjct: 170 GWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYD 229
Query: 231 YTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNL 290
Y + VLT+EW++G +++ +++ G+ + L + G++ Q+ G+FHAD HPGN+
Sbjct: 230 YCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 291 LATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTP 350
L + + LDFG++ + + + + + NRDY +A + ++ D
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 351 IVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALY 410
+ A+R + N +S+++F ++ L V ++ + L+ ++L +EGL
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 411 ADPNFKVLAASYPYFAKRL 429
DP+ + + P+ K +
Sbjct: 410 LDPDLDLWKTAKPFLVKWM 428
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 194/371 (52%), Gaps = 5/371 (1%)
Query: 62 LGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSS 121
LGP FVK GQ LSTR D+ PPEY +EL+ LQD +P F A +ER LG ++ +F
Sbjct: 59 LGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFVD 118
Query: 122 ISPSPIAAASLGQVYKAQLKY----SGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINK- 176
P+A+AS+ QV+KA L+ G+ VAVKV RPGI I D L+R + + K
Sbjct: 119 FDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEKL 178
Query: 177 YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKV 236
+ D ++ EF ++ EL+ + E NA + ++ + + ++VP++F+DY+S +V
Sbjct: 179 FADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSREV 238
Query: 237 LTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEG 296
LT+EW+ G+ + + + G+ + L G++ Q+ +G+FHAD HPGN+ +G
Sbjct: 239 LTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFVAADG 298
Query: 297 KLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALR 356
+ LDFG++ + + + + + NRDY +A + ++ D + A+R
Sbjct: 299 RYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESGWVPRDTRAEELEAAVR 358
Query: 357 NFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFK 416
+ +SE++F ++ L ++ + L+ ++L +EGL DP
Sbjct: 359 TVCEPIFEKPLSEISFGMVLLRLFETSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELD 418
Query: 417 VLAASYPYFAK 427
+ + P+ K
Sbjct: 419 LWDTAKPFLTK 429
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 204/379 (53%), Gaps = 2/379 (0%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
A LR LGP F+K GQ LSTRPD+ P +Y EL++LQD +P F + IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIR-GV 170
G +++ +++ PIA+AS+ QV+KA+L +SG+ VAVKV RP + I D L+R G
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGERVAVKVLRPNLLPLIEQDLSLMRFGA 169
Query: 171 GFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWD 230
++ + D + ++ EF ++ EL+ ++E NA + + + + ++VP +F+D
Sbjct: 170 AWVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYD 229
Query: 231 YTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNL 290
Y + VLT+EW++G + + +++ G+ + L + G++ Q+ G+FHAD HPGN+
Sbjct: 230 YCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 291 LATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTP 350
L + + LDFG++ + + + + + NRDY +A + ++ D
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 351 IVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALY 410
+ A+R + N +S+++F ++ L V ++ + L+ ++L +EGL
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 411 ADPNFKVLAASYPYFAKRL 429
DP+ + + P+ K +
Sbjct: 410 LDPDLDLWKTAKPFLVKWM 428
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 208/413 (50%), Gaps = 11/413 (2%)
Query: 28 LGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEE 87
L SL L ++R G+ R A +R F LGP F+K GQ LSTR D+ PP+ EE
Sbjct: 36 LARRSLFWLKNKRQGL------NRGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEE 89
Query: 88 LSELQDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIV 147
L+ LQD +P F A IE LG T++++F +P+A+AS+ QV+ A+LK +G+ +
Sbjct: 90 LALLQDRVPPFCGQAARRQIEASLGCTIETLFDDFDETPLASASIAQVHTARLKENGREI 149
Query: 148 AVKVQRPGIEEAIGLDFYLIRGVGFLINKYV-DIITTDVVALIDEFASRVYQELNYVQEG 206
+KV RP IE I D L++ + L+ ++V + +++E+ + ELN ++E
Sbjct: 150 VIKVIRPDIEPVIEADLRLMQALARLVARFVPQSGRLRPIEVVEEYRKTILDELNLMREA 209
Query: 207 QNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNT 266
NA + ++ + E + VP++F ++ +VL ME + G+ +++ A+E+ G + L
Sbjct: 210 ANAIQLRRNFTGSEALYVPEVFTEHCREQVLVMERIYGIPVSDIAALEANGTNMKLLAER 269
Query: 267 GIQCSLRQLLEYGYFHADPHPGNLLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVV 322
G++ Q+ +FHAD HPGN+ + PE L +D G++ E + + + +
Sbjct: 270 GVEVFFTQVFRDSFFHADMHPGNIFVSYEHPENPLWIGIDCGIVGTLNREDKRYLAENFL 329
Query: 323 HMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAV 382
NRDY +A + ++ PD V A+R + +SE++F ++ L
Sbjct: 330 AFFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTVLEPIFEKPLSEISFGHVLLNLFNT 389
Query: 383 LYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
++ V L+ ++L +EGL P + + PY + P
Sbjct: 390 ARRFNMQVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPYLENWMYQQVGP 442
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 192 bits (487), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 200/390 (51%), Gaps = 8/390 (2%)
Query: 46 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 105
+ R R LR +LGP FVK GQ LSTR D+ PP+ +EL++LQD +P F A +
Sbjct: 44 RQTRPRGERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAA 103
Query: 106 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYS---GQIVAVKVQRPGIEEAIGL 162
+ER LG L ++F P+A+AS+ QV+ A L+ G+ VAVKV RPG+ I
Sbjct: 104 IVERSLGKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDS 163
Query: 163 DFYLIRGVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKED 221
D L+R V + K + D ++ EF ++ EL+ ++E NA + ++ +A E
Sbjct: 164 DLALMRDVATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSEL 223
Query: 222 VLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYF 281
+LVP++FWD+ + +V ME + GV+++ + + G+ L G++ Q+ G+F
Sbjct: 224 LLVPEVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFF 283
Query: 282 HADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYY 337
HAD HPGN+L + PE G+ LDFG++ E + + + + RDY +A +
Sbjct: 284 HADMHPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALLHV 343
Query: 338 ALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALI 397
+ + V + A+R + + + E++ ++ L ++ V L+
Sbjct: 344 ESGWAPEETRVEELEGAIRACCEPYFDRPLGEISLGLVLMRLFQTSRRFNVEVQPQLVLL 403
Query: 398 LRSLTVLEGLALYADPNFKVLAASYPYFAK 427
++L +EGL DP+ + + P+ +
Sbjct: 404 QKTLLNVEGLGRQLDPDLDLWKTAKPFLER 433
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 168
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 169 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 288 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 404 LEGLALYADPNFKVLAASYPYFAKRLLTD 432
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 168
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 169 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 288 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 404 LEGLALYADPNFKVLAASYPYFAKRLLTD 432
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 168
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 169 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 288 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 404 LEGLALYADPNFKVLAASYPYFAKRLLTD 432
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 168
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 169 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 288 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 404 LEGLALYADPNFKVLAASYPYFAKRLLTD 432
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 168
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 169 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 288 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 404 LEGLALYADPNFKVLAASYPYFAKRLLTD 432
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 168
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 169 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 288 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 404 LEGLALYADPNFKVLAASYPYFAKRLLTD 432
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 168
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 169 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 288 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 404 LEGLALYADPNFKVLAASYPYFAKRLLTD 432
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 168
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 169 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 288 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 404 LEGLALYADPNFKVLAASYPYFAKRLLTD 432
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 202/407 (49%), Gaps = 18/407 (4%)
Query: 51 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 110
R LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD +P F A IER
Sbjct: 49 RGQRLREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERA 108
Query: 111 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQI---VAVKVQRPGIEEAIGLDFYLI 167
LD IF S P+A+AS+ QV+ A + + VAVKV RPG++ I D L+
Sbjct: 109 FRKKLDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALM 168
Query: 168 RGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 222
++ ++V+ ++ D L + EF + ++ EL+ ++E NA + ++ + V
Sbjct: 169 H----MMARWVERLSADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLV 224
Query: 223 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 282
L+P+++WD+ V+ M+ + GV +++ + G+ + L G+ Q+ G+FH
Sbjct: 225 LIPEVYWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFH 284
Query: 283 ADPHPGNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 338
AD HPGN++ + E G+ LDFG++ E + + + RDY+ +A +
Sbjct: 285 ADMHPGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELHIE 344
Query: 339 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 398
++ P V + A+R + + ++E++ ++ L ++ + L+
Sbjct: 345 SGWVPPSTRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLFQTSRRFQVEIQPQLVLLQ 404
Query: 399 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD--PNPYLRDALVE 443
++L +EGL DPN + + + P+ K +L P R+ L E
Sbjct: 405 KTLLNIEGLGRQLDPNLDLWSTAKPFLEKWMLDQMGPQRLWRELLAE 451
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 188 bits (477), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 201/395 (50%), Gaps = 6/395 (1%)
Query: 46 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 105
Q + R LRR LGP FVK GQ LSTRPD+ P + + EL+ LQD + F E
Sbjct: 43 QPRLSRGERLRRACEDLGPIFVKFGQLLSTRPDLVPADIVLELNHLQDNVTPFSKGEFQR 102
Query: 106 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDF- 164
+E LG ++ +F+S + P+A+AS+ QV+ A LK G+ V +KV RPGI++ I D
Sbjct: 103 IVESSLGASVAEVFASFNIEPLASASVAQVHTAVLK-DGREVVIKVIRPGIDKVIAQDIA 161
Query: 165 YLIRGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLV 224
L+R ++ N +D V +++++ + ++ EL+ +E N + ++ + + + V
Sbjct: 162 LLLRVARWVENNTLDGKRLHPVEIVEDYRTTIFDELDLQREAANGSQLRRNFLNSPLLYV 221
Query: 225 PDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHAD 284
P+++W+YT VL ME + G+ + + A+ +Q + L G++ Q+ E+ +FHAD
Sbjct: 222 PEVYWEYTRTNVLVMERIYGIPVTDLAALNAQQTDMKKLAERGVEIFFTQVFEHNFFHAD 281
Query: 285 PHPGNLLATPEGKLA----FLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALD 340
HPGN+ E A +D ++ ++ + +++ M RDY +A +
Sbjct: 282 MHPGNIFVAHEHPSAPQYIAVDMAIVGSLTRADQYYLARNLLAMFRRDYRQVAELHVESG 341
Query: 341 FLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRS 400
++ V V + A+R + + E++F ++ L ++ V L+ ++
Sbjct: 342 WVPSHVRVEELEAAVRTVCEPIFEKPLKEISFAQVLLNLFRTARRFEMEVQPQLVLLQKT 401
Query: 401 LTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
L +EGL P+ + A ++P+ + L +P
Sbjct: 402 LLNIEGLGRQLYPDLDLWATAHPFLERWLKNRFHP 436
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/427 (28%), Positives = 215/427 (50%), Gaps = 15/427 (3%)
Query: 16 HGLFRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLST 75
+ ++R +I+ L + ++D + L+ NK K LR+ F LGPTF+K+GQ LST
Sbjct: 1 NSVYRLKEIVKVLAYYGFGFIVDSK---LNGNK-KSPENLRKAFEELGPTFIKIGQILST 56
Query: 76 RPDICPPEYLEELSELQDALP--TFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLG 133
RPD+ P Y++ELS+LQ+ +P F D E + EL T+D+ F +PI +AS+
Sbjct: 57 RPDLLPLPYIKELSKLQNNVPPENFIDIE--NLFFEELSSTIDNTFLYFDKTPIGSASIA 114
Query: 134 QVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRG-VGFLINKYVDIITTDVVALIDEF 192
QV+ A LK G+ V VK+QRPGI E + D +I+ + K+ D + D IDE
Sbjct: 115 QVHDAILK-DGRFVIVKIQRPGIAEMMKTDLSIIKKLLNITKTKFTDAL-IDPKEAIDEL 172
Query: 193 ASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVA 252
QEL+++ E N ++FKKL D + V P + K++ ME + G+K++
Sbjct: 173 FISTTQELDFINEINNIKKFKKLNEDVKFVRTPYTIDKLCTEKIIVMEKIVGIKIDNLKK 232
Query: 253 IESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEE 312
+ ++G + +L +Q+ + G+FH DPHPGNLL E + ++DFG+M +
Sbjct: 233 LLNEGYDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNLLIR-ENHICYIDFGIMGTISKS 291
Query: 313 ARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNF 372
+ ++ ++ + D M ++ V+ + ++ FD+ ++ S+ +
Sbjct: 292 LKISLNDAILAVAYHDVNKMISVIMSIGVKKGYVNRNSLYESIEYLFDNYISVSLKNIKI 351
Query: 373 KTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD 432
++ + + +P ++L+S ++EG+ P ++ PY + +
Sbjct: 352 SVMLQEIFQISKNNNIKLPKELTMLLKSTLMIEGVIARISPELSIVDVLIPYVKSQ---N 408
Query: 433 PNPYLRD 439
N + R+
Sbjct: 409 QNLFFRN 415
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 197/385 (51%), Gaps = 6/385 (1%)
Query: 46 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 105
Q K R LR LGP FVK GQ LSTR D+ P + E L +LQD +P FP +A
Sbjct: 46 QPKLSRGDRLRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARG 105
Query: 106 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFY 165
IE+ LG + +F+ SP P+A+AS+ QV+ A L +GQ V VKV RPGIE+ I D
Sbjct: 106 IIEKSLGAPVSELFAEFSPDPMASASVAQVHAATLP-NGQKVVVKVLRPGIEKVIRQDLG 164
Query: 166 LIRGVGFLINKY-VDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLV 224
L+ + L+ KY + V ++ ++ S ++ EL+ +E NA + ++ + + + +
Sbjct: 165 LMYLMAGLLEKYWSEGKRLHPVEVVADYDSTIHDELDLQREAANASQLRRNFENSPLIYI 224
Query: 225 PDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHAD 284
P I WDYT VL ME + G+ + + A+E G+ + L G++ Q+ +FHAD
Sbjct: 225 PFIDWDYTRKSVLVMERIHGIPIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHAD 284
Query: 285 PHPGNL---LATP-EGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALD 340
HPGN+ ++ P + K +DFG++ + + + +++ RDY +A+ +
Sbjct: 285 MHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQLHIQSG 344
Query: 341 FLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRS 400
++ P+ V A+R + + +++F + L ++ V L+ ++
Sbjct: 345 WVPPETRVNEFEAAIRTVCEPIFERPLKDISFGHFLLRLFQTARRFNMEVQPQLVLLQKT 404
Query: 401 LTVLEGLALYADPNFKVLAASYPYF 425
L +EGL P+ + + + P+
Sbjct: 405 LLNVEGLGRQLYPDLDLWSTAQPFL 429
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 186 bits (471), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 110/390 (28%), Positives = 196/390 (50%), Gaps = 5/390 (1%)
Query: 51 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 110
R A +R F LGP F+K GQ LSTR D+ PP+ EEL+ LQD +P F A IE
Sbjct: 53 RGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVPPFCGQAARLKIEES 112
Query: 111 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGV 170
LG ++++F +P+A+AS+ QV+ +LK +G+ + +KV RP IE I D L++ +
Sbjct: 113 LGCPVETLFDDFDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTL 172
Query: 171 GFLINKYV-DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFW 229
L+ ++V + +++E+ + ELN ++E NA + ++ + + + VP++F
Sbjct: 173 ARLVARFVPQSARLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSDALYVPEVFT 232
Query: 230 DYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGN 289
++ VL ME + G+ +++ A+E+ G + L G++ Q+ +FHAD HPGN
Sbjct: 233 EHCREHVLVMERIYGIPVSDIPALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGN 292
Query: 290 LLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPD 345
+ + P+ L +D G++ E + + + + NRDY +A + ++ PD
Sbjct: 293 IFVSYEHPDNPLWIGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPD 352
Query: 346 VDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLE 405
V A+R + +SE++F ++ L ++ V L+ ++L +E
Sbjct: 353 TKVDEFEFAIRTVLEPIFEKPLSEISFGHVLLNLFNTARRFNMAVQPQLVLLQKTLLYVE 412
Query: 406 GLALYADPNFKVLAASYPYFAKRLLTDPNP 435
GL P + + PY + P
Sbjct: 413 GLGRQLYPQLDLWQTAKPYLENWMHEQVGP 442
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 186 bits (471), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/392 (27%), Positives = 196/392 (50%), Gaps = 4/392 (1%)
Query: 48 KRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCI 107
++ R A LR F LGP F+K GQ LSTR D+ PP+ EEL+ LQD +P+F A I
Sbjct: 50 EQSRGARLRHAFEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQLAREQI 109
Query: 108 ERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLI 167
E+ LG ++++F+ P+A+AS+ QV+ A+LK + + +KV RP I+ I D L+
Sbjct: 110 EQALGQPIEALFADFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLM 169
Query: 168 RGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
R ++ + V +I+E+ + ELN + E NA + ++ + + + VP +
Sbjct: 170 RLCAKIVAFLIPNNRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFENSSHLYVPLV 229
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
+ DY VL ME + G+ ++++ A+E+ G + L G++ Q+ +FHAD HP
Sbjct: 230 YSDYCRESVLVMERIYGIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHP 289
Query: 288 GNLLATPEG----KLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + E + +D G++ + + + + + NRDY +A + ++
Sbjct: 290 GNVFVSYEHPHDPQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVP 349
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
PD V ALR + ++E++F ++ L ++ +V L+ ++L
Sbjct: 350 PDTKVEEFESALRTVLEPIFAKPLAEISFGQVLLNLFNTARRFNMHVQPQLVLLQKTLLY 409
Query: 404 LEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
+EGL + P + + P+ + P
Sbjct: 410 IEGLGRHLYPQLDLWQTAKPFLEHWMRQQIGP 441
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 199/397 (50%), Gaps = 16/397 (4%)
Query: 51 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 110
R LR RLGP FVK GQ LSTR D+ PP+ +EL+ LQD +P FP A A + IER
Sbjct: 49 RGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERA 108
Query: 111 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKY-SGQI--VAVKVQRPGIEEAIGLDFYLI 167
+ +F +PIA+AS+ QV+ A ++ G++ VAVKV RP + I D L+
Sbjct: 109 FRRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALM 168
Query: 168 RGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 222
++ +V+ ++ D L + EF ++ EL+ V+E NA + ++ A E V
Sbjct: 169 A----MMAGWVEKLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELV 224
Query: 223 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 282
L+P++FWD+ +V+ ME + GV + + + + G+ + L G+ Q+ G+FH
Sbjct: 225 LIPEMFWDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFH 284
Query: 283 ADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 338
AD HPGN+ + PE G+ LDFG++ E + + + V RDY+ +A +
Sbjct: 285 ADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHLE 344
Query: 339 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 398
++ + + A+R + + + E++ ++ L ++ + L+
Sbjct: 345 SGWVPEGTRIDELEGAIRTVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQ 404
Query: 399 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
++L +EGL DP + + P+ K ++ P
Sbjct: 405 KTLLNIEGLGRQLDPELDLWHTAKPFLEKWMVDQIGP 441
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 199/397 (50%), Gaps = 16/397 (4%)
Query: 51 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 110
R LR LGP FVK GQ LSTR D+ PP+ +EL+ LQD +P F A + IER
Sbjct: 49 RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERA 108
Query: 111 LGLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLI 167
+ +F S P+A+AS+ QV+ A ++ + VAVKV RPG+ I D L+
Sbjct: 109 FRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALM 168
Query: 168 RGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 222
R ++ +V+ ++ D L + EF + ++ EL+ V+E NA + ++ + V
Sbjct: 169 R----MMAGWVESLSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLV 224
Query: 223 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 282
L+P++FWD+ +VL ME ++GV +N+ + S G+ + L G+ Q+ G+FH
Sbjct: 225 LIPEVFWDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFH 284
Query: 283 ADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 338
AD HPGN+ + PE G+ LDFG++ E + + + RDY+ +A +
Sbjct: 285 ADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIE 344
Query: 339 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 398
++ V + A+R + + + E++ ++ L ++ + L+
Sbjct: 345 SGWVPAHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQ 404
Query: 399 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
++L +EGL DP+ + + + P+ K +L P
Sbjct: 405 KTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLDQLGP 441
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 182 bits (461), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 199/397 (50%), Gaps = 16/397 (4%)
Query: 51 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 110
R LR LGP FVK GQ LSTR D+ PP+ +EL+ LQD +P F A + IER
Sbjct: 49 RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERA 108
Query: 111 LGLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLI 167
+ +F S P+A+AS+ QV+ A ++ + VAVKV RPG+ I D L+
Sbjct: 109 FRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALM 168
Query: 168 RGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 222
R ++ +V+ ++ D L + EF + ++ EL+ V+E NA + ++ + V
Sbjct: 169 R----MMAGWVESLSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLV 224
Query: 223 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 282
L+P++FWD+ +VL ME ++GV +N+ + S G+ + L G+ Q+ G+FH
Sbjct: 225 LIPEVFWDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFH 284
Query: 283 ADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 338
AD HPGN+ + PE G+ LDFG++ E + + + RDY+ +A +
Sbjct: 285 ADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIE 344
Query: 339 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 398
++ V + A+R + + + E++ ++ L ++ + L+
Sbjct: 345 SGWVPAHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQ 404
Query: 399 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
++L +EGL DP+ + + + P+ K +L P
Sbjct: 405 KTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLDQLGP 441
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 107/394 (27%), Positives = 197/394 (50%), Gaps = 14/394 (3%)
Query: 51 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 110
R A LR LGP F+K GQ LSTR D+ PP+ +EL+ LQD +P FP+ +A + IER+
Sbjct: 55 RGARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQ 114
Query: 111 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGV 170
LG + +F+ P+A+AS+ QV+ AQLK SG+ V VKV RPG++ I D +
Sbjct: 115 LGAPVSQLFARFDSQPLASASVAQVHAAQLK-SGEEVVVKVVRPGLKPVIRQDLAWL--- 170
Query: 171 GFLINKYVDIITTDV-----VALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVP 225
FL+ + + + D V ++ ++ ++ EL+ ++E NA + ++ + + VP
Sbjct: 171 -FLLARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVP 229
Query: 226 DIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADP 285
++WD +VL ME + GV + + + Q + L G++ Q+ +FHAD
Sbjct: 230 QVYWDLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADM 289
Query: 286 HPGNLLATPEGKLA----FLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDF 341
HPGN+ + + +D G++ +E + + +++ RDY +A+ + +
Sbjct: 290 HPGNIFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGW 349
Query: 342 LSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSL 401
+ D V A+R + + +++F ++ L ++ V L+ ++L
Sbjct: 350 VPADTKVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTL 409
Query: 402 TVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
+EGL P+ + + + P+ + + +P
Sbjct: 410 LNIEGLGRQLYPDLDLWSTAQPFLERWMRERVSP 443
>sp|B1KR05|UBIB_SHEWM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=ubiB PE=3 SV=1
Length = 549
Score = 181 bits (460), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 200/397 (50%), Gaps = 6/397 (1%)
Query: 45 DQNKRKRAAE-LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEA 103
+Q+K K E L+ + LGP ++K GQ LSTR D+ E+ EEL+ LQD +P F + A
Sbjct: 46 NQHKDKVGGERLKLVMQELGPVYIKFGQMLSTRRDLLDDEWAEELAMLQDRVPPFDSSIA 105
Query: 104 FSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLD 163
IE ELG ++D+ F +P+A+AS+ QV+ A LK +G+ V +KV RP +E + D
Sbjct: 106 REMIELELGTSIDTYFDDFDNTPLASASISQVHTATLKSNGKAVVLKVLRPNVEAQVDAD 165
Query: 164 FYLI-RGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 222
+L+ + FL +++++ + + ELN E NA + + + D +
Sbjct: 166 LHLMSQAANFLETVLGHGNRLRPAEVVEDYRTTIEGELNLKLEALNAVKLRNNFLDSGSL 225
Query: 223 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 282
+P ++ + +++ ME +EG+ +++ A+++QG + L G++ Q+ +FH
Sbjct: 226 YIPYMYEELCFTRLIVMERIEGIPVSDMAALKAQGTNLKVLAERGVELFFTQVFRDNFFH 285
Query: 283 ADPHPGNLLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 338
AD HPGN+ + PE LD G+M EE + + + + NRDY +A+ Y
Sbjct: 286 ADMHPGNIFVSREHPEDPYYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYHRIAQLYIE 345
Query: 339 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 398
++SPD D+ A++ + N + E++F ++ L ++ V L+
Sbjct: 346 SGWVSPDTDIAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLE 405
Query: 399 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
++L +EGL P + + P+ K + P
Sbjct: 406 KTLLYIEGLGRQLYPQLDLWQTAKPFLEKWMSEQVGP 442
>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
SV=1
Length = 549
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 202/399 (50%), Gaps = 6/399 (1%)
Query: 43 VLDQNKRKRAAE-LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDA 101
V +++K K E L+ LGP ++K GQ LSTR D+ E+ +ELS LQD +P F A
Sbjct: 44 VRNRHKDKCGGERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAQELSMLQDRVPAFDSA 103
Query: 102 EAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIG 161
A IE EL +DS+F +P+A+AS+ QV+ A LK +GQ V +KV RP +E I
Sbjct: 104 LAREAIEAELKAPIDSLFDDFDDTPLASASISQVHTATLKSNGQQVVLKVLRPNVEANIK 163
Query: 162 LDFYLIRGVGFLINKYV-DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 220
D L+ V +N+ + + V +++++ + + ELN E NA + + + D +
Sbjct: 164 ADLELMLQVATWVNRLLGEGNRLRPVEVVEDYQNTILGELNLKLEALNATKLRNNFLDSD 223
Query: 221 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 280
+ +P ++ + +++ ME ++G+ +++ A+ +QG + L G++ Q+ +
Sbjct: 224 ALYIPYVYEELCHPRLMVMERIDGIPVSDIEALNAQGTNLKLLAERGVELFFTQVFRDNF 283
Query: 281 FHADPHPGNLLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDY 336
FHAD HPGN+ + PE LD G+M EE + + + + NRDY +A+ Y
Sbjct: 284 FHADMHPGNIFISREHPENPFYIGLDCGIMGSLNEEDKRYLAENFLAFFNRDYHRIAQLY 343
Query: 337 YALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYAL 396
++S D D+ A++ + N ++E++F ++ L ++ V L
Sbjct: 344 VESGWVSADTDILAFEQAVKLVCEPMFNKPLNEISFGHVLLELFRTARRFDIVVQPQLVL 403
Query: 397 ILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
+ ++L +EGL P + + P+ + + P
Sbjct: 404 LEKTLLYIEGLGRQLYPQLDLWQTAKPFLERWMAEQVGP 442
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/405 (28%), Positives = 198/405 (48%), Gaps = 14/405 (3%)
Query: 32 SLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSEL 91
SL+LL+ R + R A LR LGP F+K GQ LSTR D+ PP+ +EL L
Sbjct: 37 SLRLLMPWRWLPRKPTELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLL 96
Query: 92 QDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKV 151
QD +P F +A + IE +LG + +FS P+A+AS+ QV+ A+LK +G+ V VKV
Sbjct: 97 QDRVPPFDPKKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKV 155
Query: 152 QRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDV-----VALIDEFASRVYQELNYVQEG 206
RPG++ I D + FLI K + + D V ++ ++ +Y EL+ ++E
Sbjct: 156 VRPGLKPVIAQDLAWL----FLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREA 211
Query: 207 QNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNT 266
NA + ++ + D E + VP ++WD KVL ME + GV + + + Q + L
Sbjct: 212 ANASQLRRNFEDSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAER 271
Query: 267 GIQCSLRQLLEYGYFHADPHPGNLLATP----EGKLAFLDFGMMSETPEEARFAIIGHVV 322
G++ Q+ +FHAD HPGN+ + + +D G++ E + + ++
Sbjct: 272 GVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLF 331
Query: 323 HMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAV 382
RDY +A+ + ++ + V A+R + + +++F ++ L
Sbjct: 332 AFFKRDYRRVAQLHIDSGWVPANTKVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQT 391
Query: 383 LYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAK 427
++ V L+ ++L +EGL P+ + + + PY +
Sbjct: 392 ARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPYLER 436
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 178 bits (452), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 183/369 (49%), Gaps = 25/369 (6%)
Query: 55 LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLT 114
L +I LGP ++KLGQ LSTRPD+ PP Y+ L+ LQ +P P + ++RE
Sbjct: 46 LTKILVELGPFYIKLGQLLSTRPDLLPPRYINALTALQSNVPPLPWSAIEDLLQREFPQP 105
Query: 115 LDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLI 174
L F I PIAA S+GQ+++A L+ SG+ VA+KV+RPGI+ + D LI+ V L+
Sbjct: 106 LGETFQEIESEPIAAGSIGQIHRAVLQ-SGETVAIKVKRPGIDVIVEQDSLLIKDVAELL 164
Query: 175 NKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRF-----KKLYADKEDVLVPDIFW 229
D+V L DEF V ELN+ E K + D +++P ++W
Sbjct: 165 ALTEFGQNYDIVKLADEFTQTVKAELNFDTEAAYTNNLRTNLAKTTWFDPNQLVIPKVYW 224
Query: 230 DYTSGKVLTMEWVEGV-----KLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHAD 284
+ T+ K L +EW++GV L + + + K ++ + +QL G+FHAD
Sbjct: 225 ELTNQKFLVLEWLDGVPILTADLTQPPSDKDIAEKKKEITTLLFRAFFQQLYVDGFFHAD 284
Query: 285 PHPGNLLATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYAL----- 339
PHPGN+ +G+LA +D GM+ R + ++ +V+ D + A+ L
Sbjct: 285 PHPGNIFYLADGRLALIDCGMVGRLDPRTRQLLTEMLLAIVDLDAKRCAQLTVELSESVG 344
Query: 340 --DFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALI 397
+F +VD + LR ++D S+SE NF +V + VPA L
Sbjct: 345 RVNFQRLEVDYERM---LRKYYD----LSLSEFNFSEVVYEFLRIARVNKLKVPACLGLY 397
Query: 398 LRSLTVLEG 406
+ L LEG
Sbjct: 398 AKCLANLEG 406
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 196/393 (49%), Gaps = 17/393 (4%)
Query: 49 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 108
+ R A LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 109 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 164
R LGL + F++ +P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADI 168
Query: 165 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 220
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 221 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 280
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 281 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 334
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 335 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 394
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQL 405
Query: 395 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 427
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 196/393 (49%), Gaps = 17/393 (4%)
Query: 49 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 108
+ R A LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 109 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 164
R LGL + F++ +P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADI 168
Query: 165 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 220
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 221 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 280
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 281 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 334
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 335 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 394
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQL 405
Query: 395 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 427
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|B0TJ18|UBIB_SHEHH Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
halifaxensis (strain HAW-EB4) GN=ubiB PE=3 SV=1
Length = 549
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/405 (28%), Positives = 203/405 (50%), Gaps = 6/405 (1%)
Query: 45 DQNKRKRAAE-LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEA 103
+Q+K K E L+ LGP ++K GQ LSTR D+ E+ EEL+ LQD +P F A A
Sbjct: 46 NQHKDKVGGERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIA 105
Query: 104 FSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLD 163
+ IE EL ++S F+ P+A+AS+ QV+ A LK +G V +K+ RP +E+ + D
Sbjct: 106 RASIETELNAPIESYFNDFDDIPLASASISQVHTATLKSNGAAVVLKILRPDVEQKVHAD 165
Query: 164 FYLI-RGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 222
L+ + FL +++++ + + ELN E NA + + + D +
Sbjct: 166 LLLMSQAADFLETLLGTNNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFIDSNAL 225
Query: 223 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 282
+P ++ + +++ ME ++G+ ++++VA+E+QG + L G++ Q+ +FH
Sbjct: 226 YIPYMYEELCFTRLIVMERIDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFH 285
Query: 283 ADPHPGNLLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 338
AD HPGN+ + P L LD G+M EE + + + + NRDY +A+ Y
Sbjct: 286 ADMHPGNIFVSREHPNDPLYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYRRIAQLYIE 345
Query: 339 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 398
++SPD DV A++ + N + E++F ++ L ++ V L+
Sbjct: 346 SGWVSPDTDVAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLE 405
Query: 399 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALVE 443
++L +EGL P + + P+ + + P + A V+
Sbjct: 406 KTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGPKVMAAKVK 450
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 195/393 (49%), Gaps = 17/393 (4%)
Query: 49 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 108
+ R A LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 109 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 164
R LGL + F++ +P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADI 168
Query: 165 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 220
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 221 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 280
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 281 FHADPHPGNLL--ATPEG----KLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 334
FHAD H GN+ + PE + LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 335 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 394
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQL 405
Query: 395 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 427
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/384 (27%), Positives = 194/384 (50%), Gaps = 8/384 (2%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
LR LGP FVK GQ LSTR D+ P+ EL++LQD +P F A A + IE+ L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSL 108
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 168
G +D+IF P+A+AS+ QV+ A LK ++G+ VAVKV RP + I D L+R
Sbjct: 109 GAPVDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLR 168
Query: 169 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
+W+Y + VL ME + GV +++ + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 YWEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 288 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 ATTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 404 LEGLALYADPNFKVLAASYPYFAK 427
+EGL DP + + PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 115/410 (28%), Positives = 200/410 (48%), Gaps = 15/410 (3%)
Query: 32 SLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSEL 91
SL+LL+ R + R A LR LGP F+K GQ LSTR D+ P + +EL L
Sbjct: 37 SLRLLMPWRWLPRKPTELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLL 96
Query: 92 QDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKV 151
QD +P F +A + IE +LG + +FS P+A+AS+ QV+ A+LK +G+ V VKV
Sbjct: 97 QDRVPPFDPQKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKV 155
Query: 152 QRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDV-----VALIDEFASRVYQELNYVQEG 206
RPG++ I D + FLI K + + D V ++ ++ +Y EL+ ++E
Sbjct: 156 VRPGLKPVIAQDLAWL----FLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREA 211
Query: 207 QNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNT 266
NA + ++ + E + VP ++WD KVL ME + GV + + V + Q + L
Sbjct: 212 ANASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMVTLADQRTDMKLLAER 271
Query: 267 GIQCSLRQLLEYGYFHADPHPGNLLATP----EGKLAFLDFGMMSETPEEARFAIIGHVV 322
G++ Q+ +FHAD HPGN+ + + +D G++ E + + +++
Sbjct: 272 GVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLI 331
Query: 323 HMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAV 382
RDY +A+ + ++ V A+R + + +++F ++ L
Sbjct: 332 AFFKRDYRRVAQLHIDSGWVPAHTKVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQT 391
Query: 383 LYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD 432
++ V L+ ++L +EGL P+ + + + P F +R + D
Sbjct: 392 ARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKP-FLERWMRD 440
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 197/405 (48%), Gaps = 14/405 (3%)
Query: 32 SLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSEL 91
SL+LL+ R ++ R A LR LGP F+K GQ LSTR D+ P + +EL L
Sbjct: 36 SLRLLMPWRWLPRTPSELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLL 95
Query: 92 QDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKV 151
QD +P F +A + IE +LG + +FS P+A+AS+ QV+ A+LK +G+ V VKV
Sbjct: 96 QDRVPPFDPKQAVALIESQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKV 154
Query: 152 QRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDV-----VALIDEFASRVYQELNYVQEG 206
RPG++ I D + FLI K + + D V ++ ++ +Y EL+ ++E
Sbjct: 155 VRPGLKPVIAQDLAWL----FLIAKGAERASADARRLHPVEIVGDYEKTIYDELDLLREA 210
Query: 207 QNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNT 266
NA + ++ + E + VP ++WD KVL ME + GV + + + Q + L
Sbjct: 211 ANASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAER 270
Query: 267 GIQCSLRQLLEYGYFHADPHPGNLLATP----EGKLAFLDFGMMSETPEEARFAIIGHVV 322
G++ Q+ + +FHAD HPGN+ + + +D G++ E + + +++
Sbjct: 271 GVEVFFTQVFRHSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLI 330
Query: 323 HMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAV 382
RDY +A + ++ V A+R + + +++F ++ L
Sbjct: 331 AFFKRDYRRVAELHIDSGWVPAHTKVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQT 390
Query: 383 LYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAK 427
++ V L+ ++L +EGL P+ + + + P+ +
Sbjct: 391 ARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPFLER 435
>sp|Q5H616|UBIB_XANOR Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=ubiB PE=3 SV=1
Length = 557
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 202/408 (49%), Gaps = 21/408 (5%)
Query: 49 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 108
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 109 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 164
R LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 165 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 220
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 221 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 280
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 281 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 334
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 335 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 394
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 395 ALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD---PNPYLRD 439
L+ ++L +EG+ DP + A + P +R+L + P LR+
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVL-ERILRERYSPRRVLRE 452
>sp|B2ST34|UBIB_XANOP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1
Length = 557
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 202/408 (49%), Gaps = 21/408 (5%)
Query: 49 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 108
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 109 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 164
R LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 165 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 220
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 221 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 280
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 281 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 334
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 335 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 394
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 395 ALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD---PNPYLRD 439
L+ ++L +EG+ DP + A + P +R+L + P LR+
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVL-ERILRERYSPRRVLRE 452
>sp|Q2P8Q0|UBIB_XANOM Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1
Length = 557
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 202/408 (49%), Gaps = 21/408 (5%)
Query: 49 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 108
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 109 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 164
R LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 165 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 220
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 221 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 280
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 281 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 334
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 335 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 394
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 395 ALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD---PNPYLRD 439
L+ ++L +EG+ DP + A + P +R+L + P LR+
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVL-ERILRERYSPRRVLRE 452
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 203/400 (50%), Gaps = 16/400 (4%)
Query: 46 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 105
++++ RA LR LGP F+K GQ LSTR D+ P + +EL+ LQD +P F ++ +
Sbjct: 51 RSEQPRAVRLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVA 110
Query: 106 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFY 165
IE +LG +D F+ P+A+AS+ QV+ AQLK +G+ V VKV RPG++ I D
Sbjct: 111 LIEEQLGARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLA 169
Query: 166 LIRGVGFLINKYVDIITTD-----VVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 220
+ +L + + +T+ +V ++ ++ +Y EL+ ++E NA + K+ +
Sbjct: 170 WL----YLFARLAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSP 225
Query: 221 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 280
+ VP I+WD+ KVL ME + GV + + A+ QG + L G++ Q+ +
Sbjct: 226 LLYVPQIYWDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSF 285
Query: 281 FHADPHPGNLLATP----EGKLAFLDFGMM-SETPEEARFAIIGHVVHMVNRDYEAMARD 335
FHAD HPGN+ + + + +D G++ S TP++ + + +++ RDY +A+
Sbjct: 286 FHADMHPGNIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDY-LARNLLAFFKRDYRKVAQL 344
Query: 336 YYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYA 395
+ ++ D V A+R + + +++F ++ L ++ V
Sbjct: 345 HIDSGWVPADTQVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLV 404
Query: 396 LILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
L+ ++L +EGL P + + P+ + + +P
Sbjct: 405 LLQKTLLNIEGLGRQLYPELDLWTTAKPFLERWMRKRMSP 444
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 194/384 (50%), Gaps = 8/384 (2%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
LR LGP FVK GQ LSTR D+ P + EL++LQD +P F A A +E+ L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSL 108
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 168
G +D +F P+A+AS+ QV+ A +K ++G+ VAVKV RP + I D L+R
Sbjct: 109 GAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLR 168
Query: 169 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
+W++ + VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 YWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 288 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
P V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 404 LEGLALYADPNFKVLAASYPYFAK 427
+EGL DP + + PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 193/393 (49%), Gaps = 8/393 (2%)
Query: 51 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 110
R LR RLGP FVK GQ LSTR D+ PP+ EL+ LQD +P F A + IER
Sbjct: 49 RGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERA 108
Query: 111 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQI---VAVKVQRPGIEEAIGLDFYLI 167
+ +F S P+A+AS+ QV+ A ++ + VAVKV RPG+ I D L+
Sbjct: 109 FRRPVGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLM 168
Query: 168 RGV-GFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPD 226
R + G++ + D ++ EF + ++ EL+ ++E NA + ++ V +P+
Sbjct: 169 RAMAGWVESLSADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPE 228
Query: 227 IFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPH 286
I WD+ +VL ME ++GV +++ + + G+ + L G+ Q+ G+FHAD H
Sbjct: 229 ILWDFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMH 288
Query: 287 PGNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFL 342
PGN+ + E G+ LDFG++ E + + + RDY+ +A + ++
Sbjct: 289 PGNIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAELHVESGWV 348
Query: 343 SPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLT 402
D + + A+R + + + E++ ++ L ++ + L+ ++L
Sbjct: 349 PADTRINELESAIRAVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLL 408
Query: 403 VLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 435
+EGL DP + + + P+ K +L P
Sbjct: 409 NIEGLGRQLDPELDLWSTAKPFLEKWMLDQMGP 441
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 194/384 (50%), Gaps = 8/384 (2%)
Query: 52 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 111
LR LGP FVK GQ LSTR D+ P + +EL++LQD +P F A A +E L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENAL 108
Query: 112 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 168
G +D +F P+A+AS+ QV+ A +K ++G+ VAVKV RP + I D L+R
Sbjct: 109 GAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLR 168
Query: 169 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 227
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 228 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 287
+W++ + VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 YWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 288 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 343
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 344 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 403
P V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 404 LEGLALYADPNFKVLAASYPYFAK 427
+EGL DP + + PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|Q8PQT0|UBIB_XANAC Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=ubiB PE=3 SV=1
Length = 557
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 202/408 (49%), Gaps = 21/408 (5%)
Query: 49 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 108
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGQAARLIVE 108
Query: 109 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 164
LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 AALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 165 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 220
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLAAELDLQREGANASVLRRFWEGSD 225
Query: 221 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 280
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 281 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 334
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 335 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 394
+ ++ +V + + A R+ + N +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFNRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 395 ALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD---PNPYLRD 439
L+ ++L +EG+ DP + A + P +R+L + P LR+
Sbjct: 406 ILLQKTLLNIEGVGRQLDPRLDIWAVARPVL-ERILRERYSPRRVLRE 452
>sp|Q12S25|UBIB_SHEDO Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
GN=ubiB PE=3 SV=1
Length = 549
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 217/442 (49%), Gaps = 19/442 (4%)
Query: 13 ITVHGLFRTLQILVALGSFSLKLLI--DQRNGVL-----------DQNKRKRAAE-LRRI 58
+++ L R Q+L L + L L+ D+R + +Q+K K AAE L+
Sbjct: 1 MSISSLHRGYQVLRTLLHYGLDELLAKDKRPKLFPLIRGCFFWIRNQHKDKSAAERLKLA 60
Query: 59 FTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSI 118
LGP ++KLGQ LSTR D+ E+ +L+ LQD +P F A A IE EL ++DS+
Sbjct: 61 MQELGPVYIKLGQMLSTRRDLLDDEWAYQLAMLQDRVPPFDSALAREAIETELNASIDSL 120
Query: 119 FSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYV 178
F P+A+AS+ QV+ A LK +G+ V +KV RP +E I D L+ L+ + +
Sbjct: 121 FDDFDDVPLASASIAQVHSATLKSNGKAVVLKVLRPNVEALILADLQLMSHCAALLERIL 180
Query: 179 -DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVL 237
D +I+++ + ELN E NA + + + D + + VP I+ D + +++
Sbjct: 181 GDGNRLRPAEVIEDYRLTILGELNLKLEALNAIKLRNNFLDSDALYVPYIYEDLSFTRLI 240
Query: 238 TMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLAT---P 294
ME + G+ +++ A+++QG + L G++ Q+ +FHAD HPGN+ + P
Sbjct: 241 VMERIYGIAVSDLSALKAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHP 300
Query: 295 EGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVP 353
+ LD G+M + + + + + NRDY+ +A+ + ++S D+
Sbjct: 301 DNPYYIGLDCGIMGTLTDVDKRYLAENFLAFFNRDYQRIAQLHLESGWVSEHTDIVAFEQ 360
Query: 354 ALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADP 413
A++ + N ++E++F ++ L Q+ V L+ ++L +EGL P
Sbjct: 361 AIKIVCEPMFNKPLAEISFGHVLLALFRTARQFNMVVQPQLVLLQKTLLYIEGLGRQLYP 420
Query: 414 NFKVLAASYPYFAKRLLTDPNP 435
+ + P+ + + P
Sbjct: 421 QLDLWQTAKPFLEQWMAKQVGP 442
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,441,516
Number of Sequences: 539616
Number of extensions: 7533619
Number of successful extensions: 21118
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 20344
Number of HSP's gapped (non-prelim): 362
length of query: 455
length of database: 191,569,459
effective HSP length: 121
effective length of query: 334
effective length of database: 126,275,923
effective search space: 42176158282
effective search space used: 42176158282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)