BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012857
         (455 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
           Kinase Beta2 Subunit
          Length = 96

 Score = 40.0 bits (92), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 14/88 (15%)

Query: 368 IQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKF 427
           I++S  G+ V ++GSFN W  +I +                   +  +L L  G ++ KF
Sbjct: 14  IRWSEGGKEVFISGSFNNWSTKIPLIKSHND-------------FVAILDLPEGEHQYKF 60

Query: 428 IVDGQWKVDPQRESVTKG-GICNNILRV 454
            VDGQW  DP    VT   G  NN++ V
Sbjct: 61  FVDGQWVHDPSEPVVTSQLGTINNLIHV 88


>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
           Kinase Beta1 Subunit
 pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
           Kinase Beta1 Subunit
 pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
           Kinase Beta1 Subunit
          Length = 96

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 15/88 (17%)

Query: 368 IQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKF 427
            +++G G+ V ++GSFN W  ++ +                   +  +L L  G ++ KF
Sbjct: 15  FRWTGGGKEVYLSGSFNNWS-KLPLTRSQNN-------------FVAILDLPEGEHQYKF 60

Query: 428 IVDGQWKVDPQRESVTKG-GICNNILRV 454
            VDGQW  DP    VT   G  NNI++V
Sbjct: 61  FVDGQWTHDPSEPIVTSQLGTVNNIIQV 88


>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
           Kinase
 pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
           Kinase
 pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
           Kinase
          Length = 96

 Score = 39.3 bits (90), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 15/88 (17%)

Query: 368 IQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKF 427
            +++G G+ V ++GSFN W    K+                   +  +L L  G ++ KF
Sbjct: 15  FRWTGGGKEVYLSGSFNNWS---KLPXTRSQNN-----------FVAILDLPEGEHQYKF 60

Query: 428 IVDGQWKVDPQRESVTKG-GICNNILRV 454
            VDGQW  DP    VT   G  NNI++V
Sbjct: 61  FVDGQWTHDPSEPIVTSQLGTVNNIIQV 88


>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
           Cerevisiae Ampk Homolog Snf1
 pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
           Cerevisiae Ampk Homolog Snf1
          Length = 252

 Score = 32.0 bits (71), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 366 VEIQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEI 425
           VEI++   G  V V GSF  W   I +                   +   L L PGT+  
Sbjct: 6   VEIRWQQGGSKVYVTGSFTKWRKMIGL----------IPDSDNNGSFHVKLRLLPGTHRF 55

Query: 426 KFIVDGQWKV 435
           +FIVD + +V
Sbjct: 56  RFIVDNELRV 65


>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
 pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
          Length = 294

 Score = 28.9 bits (63), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 13/81 (16%)

Query: 377 VEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVDGQWKVD 436
           VE++G   GW  RI +                   W     L  G +E K+I+DG+W  +
Sbjct: 184 VEISGLDIGWGQRIPL-----------TLGKGTGFWILKRELPEGQFEYKYIIDGEWTHN 232

Query: 437 PQRESV--TKGGICNNILRVI 455
                +   K G  NN  +V+
Sbjct: 233 EAEPFIGPNKDGHTNNYAKVV 253


>pdb|1YGG|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
           From Actinobacillus Succinogenes
 pdb|1YLH|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
           From Actinobaccilus Succinogenes In Complex With
           Manganese And Pyruvate
          Length = 560

 Score = 28.1 bits (61), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 85  MKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGF 123
           +KEL+  G  D+  IV    Y+   QL +  TKPG  GF
Sbjct: 30  VKELNDLGLTDVKEIVYNPSYE---QLFEEETKPGLEGF 65


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,201,671
Number of Sequences: 62578
Number of extensions: 393066
Number of successful extensions: 757
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 17
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)