Query 012857
Match_columns 455
No_of_seqs 141 out of 812
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 07:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 2.2E-23 4.8E-28 168.4 9.7 78 363-453 1-79 (79)
2 cd02861 E_set_proteins_like E 99.7 5E-18 1.1E-22 136.7 9.0 77 364-453 2-82 (82)
3 KOG1616 Protein involved in Sn 99.6 2.6E-15 5.6E-20 148.0 7.9 83 363-455 79-162 (289)
4 cd02858 Esterase_N_term Estera 99.2 1.9E-10 4.2E-15 94.0 9.3 76 364-452 6-84 (85)
5 cd02688 E_set E or "early" set 98.8 2.9E-08 6.3E-13 76.4 7.9 70 364-445 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.3 2.5E-06 5.4E-11 72.5 7.7 68 364-443 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.2 1.3E-06 2.8E-11 69.5 4.2 58 364-432 11-73 (85)
8 cd02860 Pullulanase_N_term Pul 97.6 0.00025 5.3E-09 59.0 7.3 68 365-446 9-88 (100)
9 cd05808 CBM20_alpha_amylase Al 97.6 0.00026 5.6E-09 57.9 6.9 63 365-439 2-78 (95)
10 PF00686 CBM_20: Starch bindin 97.5 0.00034 7.4E-09 57.9 6.5 58 364-429 2-68 (96)
11 cd02855 Glycogen_branching_enz 97.4 0.00098 2.1E-08 54.7 8.8 77 365-452 22-105 (106)
12 COG0296 GlgB 1,4-alpha-glucan 97.3 0.00043 9.2E-09 75.9 6.4 69 362-442 34-110 (628)
13 cd05818 CBM20_water_dikinase P 97.2 0.0025 5.3E-08 53.2 8.7 67 364-443 2-80 (92)
14 cd05814 CBM20_Prei4 Prei4, N-t 97.2 0.0026 5.5E-08 55.2 8.9 55 365-429 2-66 (120)
15 PRK12313 glycogen branching en 97.1 0.0016 3.4E-08 70.6 8.6 68 364-443 38-112 (633)
16 PRK12568 glycogen branching en 97.1 0.0019 4E-08 72.1 9.0 69 362-443 136-212 (730)
17 cd05820 CBM20_novamyl Novamyl 97.0 0.0058 1.3E-07 51.9 9.7 70 363-444 2-90 (103)
18 PRK14705 glycogen branching en 97.0 0.0022 4.7E-08 75.0 8.7 67 362-440 636-710 (1224)
19 cd05809 CBM20_beta_amylase Bet 97.0 0.0052 1.1E-07 51.7 8.8 70 363-441 2-86 (99)
20 cd02856 Glycogen_debranching_e 96.9 0.0037 8E-08 52.5 7.4 65 365-443 10-91 (103)
21 cd05811 CBM20_glucoamylase Glu 96.9 0.0099 2.2E-07 50.0 9.4 74 363-444 6-93 (106)
22 PRK14706 glycogen branching en 96.8 0.0034 7.5E-08 68.8 8.1 75 364-451 38-120 (639)
23 PLN02447 1,4-alpha-glucan-bran 96.7 0.0079 1.7E-07 67.5 9.9 103 307-441 76-192 (758)
24 cd05817 CBM20_DSP Dual-specifi 96.6 0.0072 1.6E-07 50.9 7.0 44 374-429 13-62 (100)
25 cd02852 Isoamylase_N_term Isoa 96.5 0.0082 1.8E-07 51.4 6.7 58 365-433 8-72 (119)
26 PRK05402 glycogen branching en 96.5 0.0096 2.1E-07 65.8 8.8 69 364-443 131-206 (726)
27 cd05813 CBM20_genethonin_1 Gen 96.5 0.013 2.7E-07 48.6 7.5 53 365-429 2-62 (95)
28 cd05807 CBM20_CGTase CGTase, C 96.4 0.031 6.6E-07 47.0 9.5 74 363-444 2-90 (101)
29 cd05467 CBM20 The family 20 ca 96.4 0.022 4.7E-07 46.3 8.2 46 373-429 12-65 (96)
30 cd02853 MTHase_N_term Maltooli 96.3 0.02 4.3E-07 46.6 7.6 73 364-452 8-82 (85)
31 TIGR02402 trehalose_TreZ malto 96.3 0.0092 2E-07 64.0 7.2 62 366-444 1-65 (542)
32 cd05816 CBM20_DPE2_repeat2 Dis 96.2 0.055 1.2E-06 45.4 10.1 66 366-443 2-84 (99)
33 PRK05402 glycogen branching en 96.0 0.011 2.5E-07 65.3 6.5 63 365-440 29-96 (726)
34 TIGR01515 branching_enzym alph 95.9 0.027 5.9E-07 61.2 8.2 68 364-443 28-103 (613)
35 cd05810 CBM20_alpha_MTH Glucan 95.7 0.066 1.4E-06 45.3 8.4 66 365-442 2-85 (97)
36 PLN02316 synthase/transferase 95.6 0.13 2.9E-06 59.8 12.9 61 362-431 327-398 (1036)
37 cd05815 CBM20_DPE2_repeat1 Dis 93.7 0.27 5.9E-06 41.2 7.0 53 368-429 6-65 (101)
38 PF03423 CBM_25: Carbohydrate 93.7 0.18 4E-06 42.1 5.9 63 365-435 3-76 (87)
39 TIGR02104 pulA_typeI pullulana 92.9 0.39 8.4E-06 52.3 8.4 65 365-443 20-95 (605)
40 cd05806 CBM20_laforin Laforin 92.5 0.59 1.3E-05 41.4 7.5 55 370-429 11-74 (112)
41 PLN02316 synthase/transferase 92.4 0.82 1.8E-05 53.5 10.6 56 363-429 490-557 (1036)
42 PF11806 DUF3327: Domain of un 92.2 0.91 2E-05 40.3 8.4 79 364-453 2-111 (122)
43 PLN02960 alpha-amylase 91.8 0.5 1.1E-05 54.5 7.8 59 365-430 129-198 (897)
44 PRK10439 enterobactin/ferric e 91.3 0.74 1.6E-05 48.1 8.0 83 361-454 36-161 (411)
45 PLN02950 4-alpha-glucanotransf 91.1 1.4 3E-05 51.0 10.5 71 362-444 151-237 (909)
46 TIGR02100 glgX_debranch glycog 88.3 1.3 2.8E-05 49.5 7.3 55 365-433 15-75 (688)
47 PLN02950 4-alpha-glucanotransf 88.1 2.5 5.5E-05 48.9 9.7 67 364-439 9-90 (909)
48 TIGR02102 pullulan_Gpos pullul 85.2 2.2 4.8E-05 50.4 7.3 65 366-442 329-408 (1111)
49 PRK03705 glycogen debranching 83.3 2.6 5.5E-05 47.1 6.5 55 365-433 20-78 (658)
50 TIGR02103 pullul_strch alpha-1 83.2 3.9 8.5E-05 47.4 8.1 68 364-443 135-216 (898)
51 cd02857 CD_pullulan_degrading_ 81.0 8.9 0.00019 31.8 7.5 58 364-429 16-79 (116)
52 PRK14510 putative bifunctional 69.7 16 0.00035 43.8 8.3 56 364-433 23-84 (1221)
53 PLN03244 alpha-amylase; Provis 62.4 6.1 0.00013 45.8 2.9 60 365-430 132-201 (872)
54 PF02903 Alpha-amylase_N: Alph 54.3 28 0.0006 30.0 5.1 68 364-439 23-100 (120)
55 KOG2264 Exostosin EXT1L [Signa 53.4 17 0.00036 41.2 4.3 63 289-351 98-167 (907)
56 PLN02877 alpha-amylase/limit d 52.9 39 0.00084 40.0 7.3 64 365-443 223-303 (970)
57 PF03370 CBM_21: Putative phos 49.9 31 0.00068 30.0 4.7 74 365-438 22-107 (113)
58 PF01357 Pollen_allerg_1: Poll 46.3 44 0.00096 27.7 4.8 58 364-436 14-77 (82)
59 PF00392 GntR: Bacterial regul 45.3 23 0.0005 27.3 2.9 32 62-93 3-35 (64)
60 TIGR03503 conserved hypothetic 43.9 45 0.00097 35.6 5.6 42 378-432 152-195 (374)
61 COG3794 PetE Plastocyanin [Ene 43.7 67 0.0014 29.5 6.0 53 361-427 59-112 (128)
62 COG1725 Predicted transcriptio 40.2 69 0.0015 29.3 5.5 47 62-110 14-61 (125)
63 KOG0470 1,4-alpha-glucan branc 39.8 29 0.00062 40.0 3.6 42 366-418 115-158 (757)
64 smart00345 HTH_GNTR helix_turn 38.9 40 0.00087 24.3 3.2 32 65-96 2-34 (60)
65 KOG1263 Multicopper oxidases [ 35.3 26 0.00057 38.9 2.4 24 408-431 96-120 (563)
66 PF10281 Ish1: Putative stress 34.6 65 0.0014 23.1 3.6 30 66-102 7-36 (38)
67 PF07862 Nif11: Nitrogen fixat 32.3 32 0.0007 25.6 1.8 17 92-108 28-44 (49)
68 cd01278 aprataxin_related apra 31.8 44 0.00096 27.6 2.7 34 77-111 42-75 (104)
69 PF11896 DUF3416: Domain of un 31.1 78 0.0017 30.5 4.6 39 384-435 55-98 (187)
70 PF08022 FAD_binding_8: FAD-bi 30.2 17 0.00037 30.8 0.0 13 19-37 47-59 (105)
71 KOG3990 Uncharacterized conser 28.2 34 0.00073 35.2 1.7 31 297-327 231-261 (305)
72 TIGR02325 C_P_lyase_phnF phosp 25.6 86 0.0019 29.4 3.8 32 61-92 10-42 (238)
73 PF13473 Cupredoxin_1: Cupredo 25.6 1.4E+02 0.0031 24.9 4.7 16 411-426 75-91 (104)
74 PRK10785 maltodextrin glucosid 24.6 2.6E+02 0.0057 31.0 7.7 62 363-432 20-87 (598)
75 KOG0272 U4/U6 small nuclear ri 24.4 1.3E+02 0.0028 33.1 5.1 53 333-385 140-197 (459)
76 TIGR02404 trehalos_R_Bsub treh 24.2 94 0.002 29.3 3.8 30 62-91 3-33 (233)
77 TIGR02375 pseudoazurin pseudoa 24.2 2.4E+02 0.0053 25.1 6.1 16 364-379 23-38 (116)
78 PF14347 DUF4399: Domain of un 24.2 1.2E+02 0.0026 26.0 4.0 33 408-441 49-81 (87)
79 KOG0045 Cytosolic Ca2+-depende 23.9 71 0.0015 35.9 3.3 28 417-444 113-143 (612)
80 PF02970 TBCA: Tubulin binding 22.6 83 0.0018 26.8 2.8 52 297-348 24-77 (90)
81 TIGR03337 phnR transcriptional 22.3 1.6E+02 0.0035 27.5 4.9 33 62-94 4-37 (231)
82 PF05262 Borrelia_P83: Borreli 21.6 1.5E+02 0.0032 32.8 5.1 63 281-343 193-258 (489)
83 PF00730 HhH-GPD: HhH-GPD supe 21.2 96 0.0021 25.7 2.9 35 67-106 17-51 (108)
84 PF05524 PEP-utilisers_N: PEP- 21.2 1.2E+02 0.0026 26.1 3.5 44 308-351 31-81 (123)
85 TIGR02018 his_ut_repres histid 20.8 1.2E+02 0.0027 28.5 3.8 31 62-92 4-35 (230)
86 PF07495 Y_Y_Y: Y_Y_Y domain; 20.2 97 0.0021 23.3 2.5 25 413-437 30-58 (66)
87 PRK14999 histidine utilization 20.1 1.2E+02 0.0027 28.8 3.7 32 61-92 14-46 (241)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.89 E-value=2.2e-23 Score=168.37 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=71.5
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEeeeCCCCCee
Q 012857 363 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 442 (455)
Q Consensus 363 Lv~VTFtW~g~AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKFIVDGeW~~DPd~Ptv 442 (455)
+++|+|+|.+++++|+|+|+|++|++.+||.+. ..+ |++++.||||.|+|||+|||.|++||+.|++
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~ 67 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE 67 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence 368999999999999999999999988999874 334 9999999999999999999999999999999
Q ss_pred cc-CCccceEEE
Q 012857 443 TK-GGICNNILR 453 (455)
Q Consensus 443 tD-~GnvNNVL~ 453 (455)
.| +|+.||+|.
T Consensus 68 ~d~~G~~NN~i~ 79 (79)
T cd02859 68 TDDEGNVNNVID 79 (79)
T ss_pred CCCCCcEeeeEC
Confidence 87 799999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.75 E-value=5e-18 Score=136.74 Aligned_cols=77 Identities=39% Similarity=0.689 Sum_probs=68.0
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEee-eCCCCCe
Q 012857 364 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 441 (455)
Q Consensus 364 v~VTFtW~g~-AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKFIVDGeW~-~DPd~Pt 441 (455)
++|+|+|.++ ++.|+|+|+|++|+ .++|.+. ..|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 4799999988 69999999999998 5789874 569999999999999999999999999 9999997
Q ss_pred ec-c-CCccceEEE
Q 012857 442 VT-K-GGICNNILR 453 (455)
Q Consensus 442 vt-D-~GnvNNVL~ 453 (455)
.. + .|+.|+||.
T Consensus 69 ~~~~~~g~~n~v~~ 82 (82)
T cd02861 69 YVDDGFGGKNAVFV 82 (82)
T ss_pred eecCCCCccceEcC
Confidence 66 4 588999873
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.6e-15 Score=148.01 Aligned_cols=83 Identities=39% Similarity=0.567 Sum_probs=75.4
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCEeeeCCCCCee
Q 012857 363 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 442 (455)
Q Consensus 363 Lv~VTFtW~g~AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKFIVDGeW~~DPd~Ptv 442 (455)
..+|+|+|.++++.|+|+|+|++|..+++|.+.. +..|.|.+.+.|++|.|+|||+|||+|++|++.|++
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta 148 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA 148 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence 4799999999999999999999999989998742 244559999999999999999999999999999999
Q ss_pred cc-CCccceEEEeC
Q 012857 443 TK-GGICNNILRVI 455 (455)
Q Consensus 443 tD-~GnvNNVL~Ve 455 (455)
++ .|+.||+|.|.
T Consensus 149 ~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 149 EDSLGNLNNILEVQ 162 (289)
T ss_pred ccccCCcccceEec
Confidence 98 79999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.16 E-value=1.9e-10 Score=94.02 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=62.9
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEcCEeeeCCCCCe
Q 012857 364 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRES 441 (455)
Q Consensus 364 v~VTFtW~g~-AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL-~LPPG~YEYKFIVDGeW~~DPd~Pt 441 (455)
..|+|+..++ +++|.|.|+|++|. ..+|.++ +.|.|++++ .|.+|.|.|+|+|||.|+.||.++.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~~-~~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~ 72 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGAG-SHPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPT 72 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCCc-cEeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCc
Confidence 4689976655 99999999999886 4789874 689999998 4888999999999999999999999
Q ss_pred ec-cCCccceEE
Q 012857 442 VT-KGGICNNIL 452 (455)
Q Consensus 442 vt-D~GnvNNVL 452 (455)
.. +.+..-|.+
T Consensus 73 ~~~~~~~~~~~~ 84 (85)
T cd02858 73 TKPGRQVDTSGV 84 (85)
T ss_pred eeecccccceee
Confidence 88 445544443
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.78 E-value=2.9e-08 Score=76.37 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=59.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCC-eeEEEEEEEcCEeeeCCCCCe
Q 012857 364 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 441 (455)
Q Consensus 364 v~VTFtW~g~-AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPP-G~YEYKFIVDGeW~~DPd~Pt 441 (455)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.. |.|.|+|+|||.|.+++..+.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4688988776 8999999999997667889764 5699999999987 999999999999999998866
Q ss_pred eccC
Q 012857 442 VTKG 445 (455)
Q Consensus 442 vtD~ 445 (455)
..+.
T Consensus 72 ~~~~ 75 (83)
T cd02688 72 ADEG 75 (83)
T ss_pred hhcC
Confidence 6653
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.29 E-value=2.5e-06 Score=72.53 Aligned_cols=68 Identities=19% Similarity=0.393 Sum_probs=50.9
Q ss_pred eEEEEEEec-CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEe--------CCe-eEEEEEEE-cC
Q 012857 364 EVVEIQYSG-DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 431 (455)
Q Consensus 364 v~VTFtW~g-~AkeV~VtGSFNNW~~~-IpMkKd~ss~~~~~~~tkesGvFsitL~L--------PPG-~YEYKFIV-DG 431 (455)
..++|+..+ .|+.|+|+|+||+|+.. .+|.+. ..|+|++++.. +.| .|.|.+.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 457886555 49999999999999864 679874 68999999864 455 56666655 78
Q ss_pred Ee--eeCCCCCeec
Q 012857 432 QW--KVDPQRESVT 443 (455)
Q Consensus 432 eW--~~DPd~Ptvt 443 (455)
+| +.||-...+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 76 5688777655
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.22 E-value=1.3e-06 Score=69.54 Aligned_cols=58 Identities=28% Similarity=0.489 Sum_probs=45.7
Q ss_pred eEEEEEEec-CCceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--eCCeeEEEEEEEcCE
Q 012857 364 EVVEIQYSG-DGEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQ 432 (455)
Q Consensus 364 v~VTFtW~g-~AkeV~VtGSFNN-W~~~-IpMkKd~ss~~~~~~~tkesGvFsitL~--LPPG~YEYKFIVDGe 432 (455)
..++|+... .|+.|.|.+.|++ |... ++|.+. ...|+|++++. +++|.++|+|.|||.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 578886555 5999999999999 8754 789831 37999999998 888988888888854
No 8
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.59 E-value=0.00025 Score=59.02 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=51.6
Q ss_pred EEEEEEec-CCceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCE-----
Q 012857 365 VVEIQYSG-DGEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ----- 432 (455)
Q Consensus 365 ~VTFtW~g-~AkeV~VtGSFNNW~-----~~IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIVDGe----- 432 (455)
.++|+..+ .+++|.|.. |++|. ..++|.+ ...|+|++.+. +.+|.+ |+|.|+|.
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~------------~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~ 74 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR------------GENGVWSVTLDGDLEGYY-YLYEVKVYKGETN 74 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec------------CCCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence 47885554 499999988 88886 3467876 37899999986 556654 89999875
Q ss_pred eeeCCCCCeeccCC
Q 012857 433 WKVDPQRESVTKGG 446 (455)
Q Consensus 433 W~~DPd~PtvtD~G 446 (455)
...||....+...|
T Consensus 75 ~~~DPyA~~~~~~~ 88 (100)
T cd02860 75 EVVDPYAKALSANG 88 (100)
T ss_pred EEcCcccEeEeeCC
Confidence 77899888877544
No 9
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.56 E-value=0.00026 Score=57.85 Aligned_cols=63 Identities=29% Similarity=0.578 Sum_probs=46.6
Q ss_pred EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-c--C-
Q 012857 365 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D--G- 431 (455)
Q Consensus 365 ~VTFtW~g---~AkeV~VtGS---FNNW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV-D--G- 431 (455)
+|+|.... .|+.|+|+|+ +.+|++. ++|... ..+.|++++.||+| .++|||++ + |
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 45665543 3899999995 6899864 578652 56789999999987 79999996 2 3
Q ss_pred -EeeeCCCC
Q 012857 432 -QWKVDPQR 439 (455)
Q Consensus 432 -eW~~DPd~ 439 (455)
.|...++.
T Consensus 70 ~~WE~~~nr 78 (95)
T cd05808 70 VTWESGPNR 78 (95)
T ss_pred EEEecCCCE
Confidence 47666643
No 10
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.46 E-value=0.00034 Score=57.89 Aligned_cols=58 Identities=22% Similarity=0.427 Sum_probs=45.0
Q ss_pred eEEEEEEec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 012857 364 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 429 (455)
Q Consensus 364 v~VTFtW~g---~AkeV~VtGSFN---NW~~--~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV 429 (455)
+.|+|.... .++.|+|+|+.. +|++ .++|.... ++.....|++++.||.| .++|||+|
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 567887744 489999999996 8997 46787531 01246799999999988 79999998
No 11
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.43 E-value=0.00098 Score=54.67 Aligned_cols=77 Identities=26% Similarity=0.402 Sum_probs=49.9
Q ss_pred EEEEE-EecCCceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCee-EEEEEEEc-CE--eeeCC
Q 012857 365 VVEIQ-YSGDGEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGT-YEIKFIVD-GQ--WKVDP 437 (455)
Q Consensus 365 ~VTFt-W~g~AkeV~VtGSFNNW~~-~IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~-YEYKFIVD-Ge--W~~DP 437 (455)
.++|+ |...++.|.|.|+|++|.. .++|.+. ...|.|.+.+. +++|. |.|++..+ |. .+.||
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP 90 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP 90 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence 46775 4455999999999999964 3578764 24899998885 66664 44444444 33 34577
Q ss_pred CCCeeccCCccceEE
Q 012857 438 QRESVTKGGICNNIL 452 (455)
Q Consensus 438 d~PtvtD~GnvNNVL 452 (455)
....++.....++|+
T Consensus 91 Ya~~~~~~~~~~~~~ 105 (106)
T cd02855 91 YAFYSELRPGTASIV 105 (106)
T ss_pred CceeeEeCCCCeEEe
Confidence 766555443355553
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.00043 Score=75.90 Aligned_cols=69 Identities=25% Similarity=0.462 Sum_probs=52.2
Q ss_pred CceEEEEEE-ecCCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCE-----e
Q 012857 362 GLEVVEIQY-SGDGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----W 433 (455)
Q Consensus 362 gLv~VTFtW-~g~AkeV~VtGSFNNW~~~-IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIVDGe-----W 433 (455)
|-..|+|.. ...+..|.|.|+||+|... .+|... ++.|+|.++++ +++| +.|||.|++. +
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-----------~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~ 101 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-----------KESGIWELFVPGAPPG-TRYKYELIDPSGQLRL 101 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccceecccccC-----------CCCceEEEeccCCCCC-CeEEEEEeCCCCceee
Confidence 556899955 4459999999999999863 344322 36799999998 9999 9999998753 3
Q ss_pred eeCCCCCee
Q 012857 434 KVDPQRESV 442 (455)
Q Consensus 434 ~~DPd~Ptv 442 (455)
+.||..-..
T Consensus 102 ~~DP~a~~~ 110 (628)
T COG0296 102 KADPYARRQ 110 (628)
T ss_pred ccCchhhcc
Confidence 677765443
No 13
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.20 E-value=0.0025 Score=53.18 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=49.6
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC--
Q 012857 364 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 431 (455)
Q Consensus 364 v~VTFtW~g---~AkeV~VtGSF---NNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV---DG-- 431 (455)
+.|+|+.++ .|+.|+|+|+- .+|++..+|.. ..+.|.+.+.||+| .++|||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 456666654 38999999988 59997777764 24569999999988 79999999 44
Q ss_pred EeeeCCCCCeec
Q 012857 432 QWKVDPQRESVT 443 (455)
Q Consensus 432 eW~~DPd~Ptvt 443 (455)
.|...++.-...
T Consensus 69 ~WE~g~Nr~~~~ 80 (92)
T cd05818 69 IWEGGNNRVLEL 80 (92)
T ss_pred EEEeCCCEEEEc
Confidence 487666544333
No 14
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.17 E-value=0.0026 Score=55.25 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=42.7
Q ss_pred EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 012857 365 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 429 (455)
Q Consensus 365 ~VTFtW~g----~AkeV~VtGS---FNNW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV 429 (455)
.|+|.... .++.|+|+|+ +.+|++. ++|.... ...+.|++.+.||++ .++|||+|
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 35565544 3899999999 8999853 5787531 145789999999998 89999999
No 15
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.11 E-value=0.0016 Score=70.62 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=49.2
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEE-cCEe--eeC
Q 012857 364 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD 436 (455)
Q Consensus 364 v~VTFtW~g~-AkeV~VtGSFNNW~~~-IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG-~YEYKFIV-DGeW--~~D 436 (455)
..|+|+...+ |++|+|+|+|++|... .+|.+. ..|+|.+++. +.+| .|.|++.+ ||.| +.|
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 105 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID 105 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence 4788966555 9999999999999864 578763 6899999997 4455 56666654 5765 456
Q ss_pred CCCCeec
Q 012857 437 PQRESVT 443 (455)
Q Consensus 437 Pd~Ptvt 443 (455)
|....+.
T Consensus 106 Pya~~~~ 112 (633)
T PRK12313 106 PFAFYFE 112 (633)
T ss_pred CceEEEe
Confidence 6655443
No 16
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.09 E-value=0.0019 Score=72.08 Aligned_cols=69 Identities=28% Similarity=0.470 Sum_probs=51.7
Q ss_pred CceEEEEEEec-CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---cCEee-
Q 012857 362 GLEVVEIQYSG-DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK- 434 (455)
Q Consensus 362 gLv~VTFtW~g-~AkeV~VtGSFNNW~~~-IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIV---DGeW~- 434 (455)
+..-|+|+..+ .|+.|.|+|+||+|..+ .+|.+ ...|+|++.+. +.+| ..|||.| ||.+.
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~------------~~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQ------------RIGGFWELFLPRVEAG-ARYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceeccc------------CCCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence 34468995555 49999999999999864 67875 36899999984 6777 4577777 78764
Q ss_pred -eCCCCCeec
Q 012857 435 -VDPQRESVT 443 (455)
Q Consensus 435 -~DPd~Ptvt 443 (455)
.||-.....
T Consensus 203 k~DPYA~~~e 212 (730)
T PRK12568 203 KADPVARQTE 212 (730)
T ss_pred cCCCcceEee
Confidence 688766544
No 17
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.04 E-value=0.0058 Score=51.93 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=51.5
Q ss_pred ceEEEEEEec-----CCceEEEEeee---CCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEE
Q 012857 363 LEVVEIQYSG-----DGEIVEVAGSF---NGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFI 428 (455)
Q Consensus 363 Lv~VTFtW~g-----~AkeV~VtGSF---NNW~~~I-----pMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFI 428 (455)
.++|+|.... .|+.|+|+|+- .+|+... +|.. .....|.+.+.||.| ..+|||+
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v 69 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFL 69 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEE
Confidence 3688998863 37999999987 4998632 4542 245689999999999 7999999
Q ss_pred E---cCE--eeeCCCCCeecc
Q 012857 429 V---DGQ--WKVDPQRESVTK 444 (455)
Q Consensus 429 V---DGe--W~~DPd~PtvtD 444 (455)
+ ||. |...++.-....
T Consensus 70 ~~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 70 KAPADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred EECCCCCEEEEeCCCEeEECC
Confidence 9 453 877666554444
No 18
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.98 E-value=0.0022 Score=74.95 Aligned_cols=67 Identities=33% Similarity=0.625 Sum_probs=49.5
Q ss_pred CceEEEEE-EecCCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc---CEe--
Q 012857 362 GLEVVEIQ-YSGDGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW-- 433 (455)
Q Consensus 362 gLv~VTFt-W~g~AkeV~VtGSFNNW~~~-IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIVD---GeW-- 433 (455)
+...|.|. |...++.|.|+|+||+|..+ .+|.+. ...|+|++.+. +.+|. .|||.|+ |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 34577884 55559999999999999864 578753 36799999884 78885 6888884 555
Q ss_pred eeCCCCC
Q 012857 434 KVDPQRE 440 (455)
Q Consensus 434 ~~DPd~P 440 (455)
+.||-..
T Consensus 704 k~DPyA~ 710 (1224)
T PRK14705 704 KADPLAF 710 (1224)
T ss_pred cCCcccc
Confidence 4566554
No 19
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=96.98 E-value=0.0052 Score=51.68 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=48.3
Q ss_pred ceEEEEEEec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---c
Q 012857 363 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 430 (455)
Q Consensus 363 Lv~VTFtW~g----~AkeV~VtG---SFNNW~~~I-pMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV---D 430 (455)
.++|+|.... .|+.|+|+| .+.+|+... +|.... ....+.|++.+.||+| .++|||++ |
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~ 72 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD 72 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence 4688898742 389999999 567998642 232210 0245789999999999 79999999 4
Q ss_pred C---EeeeCCCCCe
Q 012857 431 G---QWKVDPQRES 441 (455)
Q Consensus 431 G---eW~~DPd~Pt 441 (455)
| .|...++.-.
T Consensus 73 ~~~~~WE~g~nr~~ 86 (99)
T cd05809 73 GTNKSWQGGQQSWY 86 (99)
T ss_pred CCeeEEecCCCeeE
Confidence 4 2766555433
No 20
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.92 E-value=0.0037 Score=52.51 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=46.8
Q ss_pred EEEEEEec-CCceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEcC---------
Q 012857 365 VVEIQYSG-DGEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDG--------- 431 (455)
Q Consensus 365 ~VTFtW~g-~AkeV~VtGSFNNW~--~~IpMkKd~ss~~~~~~~tkesGvFsitL-~LPPG~YEYKFIVDG--------- 431 (455)
.++|+..+ .++.|.|.. |++|. ..++|.+. ..|+|.+.+ .+.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g~~~p~~~~~ 75 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHGPYDPERGLR 75 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECCccCcccCcc
Confidence 36785554 499999998 66664 34688763 689999998 466765 79999999
Q ss_pred ----EeeeCCCCCeec
Q 012857 432 ----QWKVDPQRESVT 443 (455)
Q Consensus 432 ----eW~~DPd~Ptvt 443 (455)
....||-+..+.
T Consensus 76 ~~~~~~~~DPYA~~~~ 91 (103)
T cd02856 76 FNPAKLLLDPYARALD 91 (103)
T ss_pred cCCCeEEecCCcceEc
Confidence 455666655544
No 21
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.85 E-value=0.0099 Score=49.95 Aligned_cols=74 Identities=28% Similarity=0.563 Sum_probs=50.2
Q ss_pred ceEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---c
Q 012857 363 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 430 (455)
Q Consensus 363 Lv~VTFtW~g---~AkeV~VtGSF---NNW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV---D 430 (455)
.+.|+|.... .|+.|+|+|+- .+|++. ++|.... .+...+.|.+.+.||+| .++|||+| |
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~ 77 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD 77 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence 3667776654 38999999987 489863 5675420 01235689999999988 59999996 2
Q ss_pred C--EeeeCCCCCeecc
Q 012857 431 G--QWKVDPQRESVTK 444 (455)
Q Consensus 431 G--eW~~DPd~PtvtD 444 (455)
| .|...++.-....
T Consensus 78 ~~~~WE~~~nr~~~~~ 93 (106)
T cd05811 78 GSVTWESDPNRSYTVP 93 (106)
T ss_pred CcEEEecCCCeEEECC
Confidence 3 3876664433333
No 22
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.81 E-value=0.0034 Score=68.79 Aligned_cols=75 Identities=29% Similarity=0.394 Sum_probs=52.2
Q ss_pred eEEEEEEec-CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcC---Ee--ee
Q 012857 364 EVVEIQYSG-DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV 435 (455)
Q Consensus 364 v~VTFtW~g-~AkeV~VtGSFNNW~~~-IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIVDG---eW--~~ 435 (455)
..|+|+..+ .|++|.|+|+||+|... .+|.+. ..|+|.+.+. +.+| ..|||.|+| .+ +.
T Consensus 38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~ 104 (639)
T PRK14706 38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM 104 (639)
T ss_pred ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence 358885544 49999999999999864 689764 5699999886 4555 468888864 43 67
Q ss_pred CCCCCeeccCCccceE
Q 012857 436 DPQRESVTKGGICNNI 451 (455)
Q Consensus 436 DPd~PtvtD~GnvNNV 451 (455)
||-.......+....+
T Consensus 105 DPYa~~~~~~~~~~sv 120 (639)
T PRK14706 105 DPYGSFFEVRPNTASI 120 (639)
T ss_pred CcceEEEecCCCCceE
Confidence 7776654433333333
No 23
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.69 E-value=0.0079 Score=67.47 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhccccccccccchHHHHHHHhhcCCceEEEEE-EecCCceEEEEeeeCC
Q 012857 307 LHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQ-YSGDGEIVEVAGSFNG 385 (455)
Q Consensus 307 l~qkele~~r~k~qie~~K~~La~l~~k~~~ei~~Aqkll~eK~~eLdaAe~aLsgLv~VTFt-W~g~AkeV~VtGSFNN 385 (455)
+..+...+.+.+++|++..-.|.- --.+|+..=|+..- ..++|+ |...|+.|+|+|+||+
T Consensus 76 ~~~r~~~~~~~~~~i~~~~~~l~~--f~~~y~~lGa~~~~-----------------~g~~FrvWAP~A~~V~LvGdFN~ 136 (758)
T PLN02447 76 LRYRYSRYRRRREEIEKNEGGLEA--FSRGYEKFGFNRSE-----------------GGITYREWAPGAKAAALIGDFNN 136 (758)
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHH--HHHHHHhceeEEec-----------------CCEEEEEECCCCCEEEEEEecCC
Confidence 444555566667777654444422 22244444444321 257784 5555999999999999
Q ss_pred Cccc-cccCCCCCCCccccccccCCCcEEEEEEe-------CCeeEEEEEEEc---CE--eeeCCCCCe
Q 012857 386 WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL-------YPGTYEIKFIVD---GQ--WKVDPQRES 441 (455)
Q Consensus 386 W~~~-IpMkKd~ss~~~~~~~tkesGvFsitL~L-------PPG~YEYKFIVD---Ge--W~~DPd~Pt 441 (455)
|+.. .+|.+. ..|+|++.+.- +.| ..|||.|. |. ++.||-...
T Consensus 137 W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~~ 192 (758)
T PLN02447 137 WNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIKY 192 (758)
T ss_pred CCCCccCceeC------------CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHhe
Confidence 9864 579864 68999999863 444 36777774 54 456775543
No 24
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.62 E-value=0.0072 Score=50.91 Aligned_cols=44 Identities=25% Similarity=0.472 Sum_probs=36.3
Q ss_pred CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 012857 374 GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 429 (455)
Q Consensus 374 AkeV~VtGSF---NNW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV 429 (455)
|+.|+|+|+- .+|++. ++|... ....|++++.||+| .++|||+|
T Consensus 13 Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 13 GEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence 8999999994 689864 577642 45689999999988 69999998
No 25
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.50 E-value=0.0082 Score=51.42 Aligned_cols=58 Identities=26% Similarity=0.437 Sum_probs=41.6
Q ss_pred EEEEEEec-CCceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCEe
Q 012857 365 VVEIQYSG-DGEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 433 (455)
Q Consensus 365 ~VTFtW~g-~AkeV~VtGSFNNW~---~--~IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIVDGeW 433 (455)
.++|.... .++.|.|.. |++|. + .++|.+.. .+..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 8 g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~ 72 (119)
T cd02852 8 GVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPF 72 (119)
T ss_pred CEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence 47785544 599999998 88886 2 35676531 124799999884 67886 6999999854
No 26
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.49 E-value=0.0096 Score=65.85 Aligned_cols=69 Identities=28% Similarity=0.452 Sum_probs=48.9
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEc-CEe--eeC
Q 012857 364 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 436 (455)
Q Consensus 364 v~VTFtW~g~-AkeV~VtGSFNNW~~~-IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG-~YEYKFIVD-GeW--~~D 436 (455)
..|+|+...+ |++|.|+|+||+|... .+|.+. ...|+|.+.+. +++| .|.|++..+ |.| +.|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 3588866555 9999999999999764 578763 26799999884 6677 676666654 454 456
Q ss_pred CCCCeec
Q 012857 437 PQRESVT 443 (455)
Q Consensus 437 Pd~Ptvt 443 (455)
|-.-.+.
T Consensus 200 PYa~~~~ 206 (726)
T PRK05402 200 PYAFAAE 206 (726)
T ss_pred CceEEEe
Confidence 5554433
No 27
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.48 E-value=0.013 Score=48.63 Aligned_cols=53 Identities=28% Similarity=0.511 Sum_probs=41.0
Q ss_pred EEEEEEec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 012857 365 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 429 (455)
Q Consensus 365 ~VTFtW~g----~AkeV~VtGSF---NNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV 429 (455)
+|+|+... +++.|+|+|+- .+|+...+|... ..+.|.+++.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence 46666543 35778999987 589877788642 45689999999998 59999998
No 28
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.41 E-value=0.031 Score=47.04 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=49.7
Q ss_pred ceEEEEEEe-c---CCceEEEEeee---CCCcccc--ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 012857 363 LEVVEIQYS-G---DGEIVEVAGSF---NGWHHRI--KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--- 429 (455)
Q Consensus 363 Lv~VTFtW~-g---~AkeV~VtGSF---NNW~~~I--pMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV--- 429 (455)
.++|+|... . .|+.|+|+|+- .+|++.. .|.... .......|.+.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~--------~~~~~~~W~~~~~lp~~~~~eyK~~~~~~ 73 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQ--------VVYQYPNWYYDVSVPAGTTIEFKFIKKNG 73 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHcccccccc--------CCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence 467888874 2 38999999987 4998642 222100 01245689999999999 79999998
Q ss_pred cCE--eeeCCCCCeecc
Q 012857 430 DGQ--WKVDPQRESVTK 444 (455)
Q Consensus 430 DGe--W~~DPd~PtvtD 444 (455)
||. |...++.-....
T Consensus 74 ~~~~~WE~g~nr~~~~p 90 (101)
T cd05807 74 DNTVTWESGSNHTYTAP 90 (101)
T ss_pred CCCEEEEeCCCEEEeCC
Confidence 343 766655444333
No 29
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.40 E-value=0.022 Score=46.34 Aligned_cols=46 Identities=26% Similarity=0.535 Sum_probs=37.1
Q ss_pred CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCC--e-eEEEEEEE
Q 012857 373 DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV 429 (455)
Q Consensus 373 ~AkeV~VtGSF---NNW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPP--G-~YEYKFIV 429 (455)
.|+.|+|+|+. .+|++. ++|... ...+.|.+.+.+|+ | .++|||++
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 12 FGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 48999999998 499853 678653 12678999999999 7 79999998
No 30
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.33 E-value=0.02 Score=46.57 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=49.7
Q ss_pred eEEEEEEec-CCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc-CEeeeCCCCCe
Q 012857 364 EVVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES 441 (455)
Q Consensus 364 v~VTFtW~g-~AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKFIVD-GeW~~DPd~Pt 441 (455)
..++|.... .+++|.|.... |. .++|.+. ..|+|++++..-+|. .|+|.|+ |..+.||....
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 357886555 49999999643 53 4788763 689999988533775 4777777 56888999887
Q ss_pred eccCCccceEE
Q 012857 442 VTKGGICNNIL 452 (455)
Q Consensus 442 vtD~GnvNNVL 452 (455)
...+.+-++++
T Consensus 72 ~~~~~~~~s~v 82 (85)
T cd02853 72 QPEGVHGPSQV 82 (85)
T ss_pred CCCCCCCCeEe
Confidence 55432223443
No 31
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.31 E-value=0.0092 Score=64.04 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=48.4
Q ss_pred EEEEEec-CCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcC-EeeeCCCCCee
Q 012857 366 VEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 442 (455)
Q Consensus 366 VTFtW~g-~AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIVDG-eW~~DPd~Ptv 442 (455)
|+|+..+ .+++|.|.+. + ..++|.+. ..|+|++++. +.+| |.|+|.||| .-+.||.....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 4675544 4999999972 3 35789874 6799999996 7788 789999999 67889998876
Q ss_pred cc
Q 012857 443 TK 444 (455)
Q Consensus 443 tD 444 (455)
..
T Consensus 64 ~~ 65 (542)
T TIGR02402 64 PD 65 (542)
T ss_pred cc
Confidence 54
No 32
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.24 E-value=0.055 Score=45.44 Aligned_cols=66 Identities=26% Similarity=0.571 Sum_probs=46.5
Q ss_pred EEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--c--
Q 012857 366 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 430 (455)
Q Consensus 366 VTFtW~g----~AkeV~VtGSF---NNW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG--~YEYKFIV--D-- 430 (455)
|+|+... .++.|+|+|+- .+|++. ++|... ....|.+.+.+|++ .++|||+| +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 4555533 48999999996 599863 578642 46689999999986 59999998 2
Q ss_pred C--EeeeCCCCCeec
Q 012857 431 G--QWKVDPQRESVT 443 (455)
Q Consensus 431 G--eW~~DPd~Ptvt 443 (455)
| .|..-++.-...
T Consensus 70 ~~~~WE~g~nr~~~~ 84 (99)
T cd05816 70 GVVSWENGPNRELSA 84 (99)
T ss_pred CcEEEEcCCCeEEEC
Confidence 3 276655544433
No 33
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.04 E-value=0.011 Score=65.26 Aligned_cols=63 Identities=21% Similarity=0.095 Sum_probs=46.1
Q ss_pred EEEE-EEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--cCE--eeeCCCC
Q 012857 365 VVEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR 439 (455)
Q Consensus 365 ~VTF-tW~g~AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKFIV--DGe--W~~DPd~ 439 (455)
-++| +|...|++|.|+|+||+ ....+|.+. ...|+|++.+++..|.. |||.| ||+ .+.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 4677 56666999999999996 344688863 36899999999777733 55555 885 5557766
Q ss_pred C
Q 012857 440 E 440 (455)
Q Consensus 440 P 440 (455)
-
T Consensus 96 f 96 (726)
T PRK05402 96 F 96 (726)
T ss_pred c
Confidence 4
No 34
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.85 E-value=0.027 Score=61.21 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=49.2
Q ss_pred eEEEEEEec-CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc---CE--eee
Q 012857 364 EVVEIQYSG-DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 435 (455)
Q Consensus 364 v~VTFtW~g-~AkeV~VtGSFNNW~~~-IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIVD---Ge--W~~ 435 (455)
..++|+... .|+.|.|+|+||+|... .+|.+. ...|+|++.+. +.+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 357885544 49999999999999764 578753 24799999885 45665 5888884 54 467
Q ss_pred CCCCCeec
Q 012857 436 DPQRESVT 443 (455)
Q Consensus 436 DPd~Ptvt 443 (455)
||-.-...
T Consensus 96 DPYA~~~~ 103 (613)
T TIGR01515 96 DPYAFYAE 103 (613)
T ss_pred CCCEeeec
Confidence 88776544
No 35
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=95.74 E-value=0.066 Score=45.28 Aligned_cols=66 Identities=26% Similarity=0.440 Sum_probs=46.2
Q ss_pred EEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 012857 365 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 431 (455)
Q Consensus 365 ~VTFtW~-g---~AkeV~VtGSFN---NW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV---DG 431 (455)
+|+|.-. + .++.|+|+|+.. +|++. ++|... ....|.+.+.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 4666532 2 389999999884 99863 456432 45679999999998 79999998 22
Q ss_pred -----EeeeCCCCCee
Q 012857 432 -----QWKVDPQRESV 442 (455)
Q Consensus 432 -----eW~~DPd~Ptv 442 (455)
.|...++.-..
T Consensus 70 ~~~~v~WE~g~Nr~~~ 85 (97)
T cd05810 70 PTAGVQWQGGGNNQLT 85 (97)
T ss_pred CcceEEEeeCCCEEEe
Confidence 47665554433
No 36
>PLN02316 synthase/transferase
Probab=95.62 E-value=0.13 Score=59.79 Aligned_cols=61 Identities=15% Similarity=0.400 Sum_probs=45.0
Q ss_pred CceEEEEEEec------CCceEEEEeeeCCCcccc----ccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-c
Q 012857 362 GLEVVEIQYSG------DGEIVEVAGSFNGWHHRI----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D 430 (455)
Q Consensus 362 gLv~VTFtW~g------~AkeV~VtGSFNNW~~~I----pMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKFIV-D 430 (455)
.-.+|++-|+. +..+|+|.|.||+|.+.. +|.+. ..+..+.|.+++.+|+.-|-.-|+. |
T Consensus 327 aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~---------~~~~g~ww~a~v~vP~~A~~mDfVFsd 397 (1036)
T PLN02316 327 AGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKS---------EEKDGDWWYAEVVVPERALVLDWVFAD 397 (1036)
T ss_pred CCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecc---------cCCCCCEEEEEEecCCCceEEEEEEec
Confidence 33588999973 368999999999999742 12221 1124557889999999999999997 6
Q ss_pred C
Q 012857 431 G 431 (455)
Q Consensus 431 G 431 (455)
|
T Consensus 398 g 398 (1036)
T PLN02316 398 G 398 (1036)
T ss_pred C
Confidence 6
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=93.74 E-value=0.27 Score=41.19 Aligned_cols=53 Identities=23% Similarity=0.534 Sum_probs=38.0
Q ss_pred EEEecC-CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 012857 368 IQYSGD-GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 429 (455)
Q Consensus 368 FtW~g~-AkeV~VtGSF---NNW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV 429 (455)
+.+... |+.|+|+|+- .+|++. ++|... .+.....|.+.+.+|++ .++|||+|
T Consensus 6 i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 6 LPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 344433 8999999987 589754 567531 01133479999999987 69999999
No 38
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=93.68 E-value=0.18 Score=42.13 Aligned_cols=63 Identities=24% Similarity=0.550 Sum_probs=38.3
Q ss_pred EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-cC--Ee
Q 012857 365 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW 433 (455)
Q Consensus 365 ~VTFtW~g------~AkeV~VtGSFNNW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKFIV-DG--eW 433 (455)
+|+|.|.. ++.+|++.+.|++|+.. +.|.+.. .....+.|++++.+|..-|...|+. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~--------~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC--------VPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES--------S---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee--------eeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 67777743 36889999999999875 4565421 0123789999999999999999998 65 56
Q ss_pred ee
Q 012857 434 KV 435 (455)
Q Consensus 434 ~~ 435 (455)
-.
T Consensus 75 DN 76 (87)
T PF03423_consen 75 DN 76 (87)
T ss_dssp ES
T ss_pred eC
Confidence 43
No 39
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=92.88 E-value=0.39 Score=52.27 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=45.6
Q ss_pred EEEEEEec-CCceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE--cCE--e
Q 012857 365 VVEIQYSG-DGEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV--DGQ--W 433 (455)
Q Consensus 365 ~VTFtW~g-~AkeV~VtGSFNNW~~-----~IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIV--DGe--W 433 (455)
.|+|+... .+++|.|.+ |++|.. .++|.+. ..|+|++.+. +.+|. .|+|.| +|. +
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~-~Y~y~v~~~~~~~~ 85 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGY-FYTYQVCINGKWRE 85 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCC-EEEEEEEcCCCeEE
Confidence 47885554 499999997 888853 3578763 5799999986 55663 355555 565 5
Q ss_pred eeCCCCCeec
Q 012857 434 KVDPQRESVT 443 (455)
Q Consensus 434 ~~DPd~Ptvt 443 (455)
+.||......
T Consensus 86 ~~DPya~~~~ 95 (605)
T TIGR02104 86 TVDPYAKAVT 95 (605)
T ss_pred EcCCCcceec
Confidence 8898876554
No 40
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=92.45 E-value=0.59 Score=41.40 Aligned_cols=55 Identities=22% Similarity=0.418 Sum_probs=37.7
Q ss_pred EecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe----eEEEEEEE
Q 012857 370 YSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 429 (455)
Q Consensus 370 W~g~AkeV~VtGSF---NNW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG----~YEYKFIV 429 (455)
+-.++++|+|+|+- .+|+.. ++|..... .........|.+.+.|++| ..+|||+.
T Consensus 11 ~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~y-----t~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 11 FADRDTELLVLGSRPELGSWDPQRAVPMRPARK-----ALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred ecCCCCEEEEEECchhcCCCCcccccccccccc-----cccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 44568999999986 599864 45654200 0000234579999999986 69999998
No 41
>PLN02316 synthase/transferase
Probab=92.41 E-value=0.82 Score=53.52 Aligned_cols=56 Identities=27% Similarity=0.427 Sum_probs=43.8
Q ss_pred ceEEEEEEecC------CceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 012857 363 LEVVEIQYSGD------GEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 429 (455)
Q Consensus 363 Lv~VTFtW~g~------AkeV~VtGSFNNW~~~I------pMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKFIV 429 (455)
-.+|++-|+.. ..+|++.|+||.|.++. +|.+. ...+.|.+++.+|..-|-..|+-
T Consensus 490 G~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 490 GTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence 46889999753 58899999999999752 35543 23456689999999999999987
No 42
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=92.17 E-value=0.91 Score=40.32 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=53.3
Q ss_pred eEEEEEEe----cCCceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEcCE-
Q 012857 364 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 432 (455)
Q Consensus 364 v~VTFtW~----g~AkeV~VtGSFNNW~~~-----IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIVDGe- 432 (455)
+.|||-|. +....|.|-|..|+...+ ..|.+- .+..+|..++.||.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 47999999 446789999999999653 346664 367899999999998 88999997532
Q ss_pred ---------------eeeCCCCCeecc-----CCccceEEE
Q 012857 433 ---------------WKVDPQRESVTK-----GGICNNILR 453 (455)
Q Consensus 433 ---------------W~~DPd~PtvtD-----~GnvNNVL~ 453 (455)
-+.||-||.... .|..-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 367999998652 366767665
No 43
>PLN02960 alpha-amylase
Probab=91.78 E-value=0.5 Score=54.46 Aligned_cols=59 Identities=19% Similarity=0.392 Sum_probs=43.2
Q ss_pred EEEE-EEecCCceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEE--EeCCe----e---EEEEEEEc
Q 012857 365 VVEI-QYSGDGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPG----T---YEIKFIVD 430 (455)
Q Consensus 365 ~VTF-tW~g~AkeV~VtGSFNNW~~~I-pMkKd~ss~~~~~~~tkesGvFsitL--~LPPG----~---YEYKFIVD 430 (455)
-|.| .|..+|..+.|+|+||||.+.. .|.+ +-.++.+-|+|.+.+ .|..| . -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 5666 7877899999999999999863 4542 123456789999998 47777 2 36777776
No 44
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=91.33 E-value=0.74 Score=48.13 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=56.0
Q ss_pred CCceEEEEEEecC-C-------ceEEEEee--eCC--CccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEE
Q 012857 361 SGLEVVEIQYSGD-G-------EIVEVAGS--FNG--WHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKF 427 (455)
Q Consensus 361 sgLv~VTFtW~g~-A-------keV~VtGS--FNN--W~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKF 427 (455)
.+.+.|||-|.++ + ..|+|.+. .+. +..+..|.+- .+..+|..++.||.. +-.|+|
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl-----------~~tDvW~~~~~~p~~~r~sY~~ 104 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRI-----------AGTDVWQWSTELSANWRGSYCF 104 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhcc-----------CCCceEEEEEEECcccEEEEEE
Confidence 5668999999974 3 25887422 221 2223368775 368899999999999 899999
Q ss_pred EEc---C-------------------------EeeeCCCCCeecc--CCccceEEEe
Q 012857 428 IVD---G-------------------------QWKVDPQRESVTK--GGICNNILRV 454 (455)
Q Consensus 428 IVD---G-------------------------eW~~DPd~PtvtD--~GnvNNVL~V 454 (455)
+++ . .=+.||.+|.... .|+..++|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 105 IPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 993 1 1147999987653 2443466654
No 45
>PLN02950 4-alpha-glucanotransferase
Probab=91.11 E-value=1.4 Score=50.98 Aligned_cols=71 Identities=20% Similarity=0.373 Sum_probs=52.1
Q ss_pred CceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE-
Q 012857 362 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV- 429 (455)
Q Consensus 362 gLv~VTFtW~g----~AkeV~VtGSF---NNW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG--~YEYKFIV- 429 (455)
..++|+|+... .|+.|+|+|+- .+|++. ++|.. .....|++.+.+|++ ..+|||++
T Consensus 151 ~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 151 DEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred CceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEE
Confidence 34788888643 38999999987 499864 45653 256789999999988 59999998
Q ss_pred --cCE--eeeCCCCCeecc
Q 012857 430 --DGQ--WKVDPQRESVTK 444 (455)
Q Consensus 430 --DGe--W~~DPd~PtvtD 444 (455)
+|. |-..++.-...+
T Consensus 219 ~~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 219 TAEGLVSLELGVNRELSLD 237 (909)
T ss_pred cCCCceEEeeCCCceeecC
Confidence 443 877666655444
No 46
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=88.31 E-value=1.3 Score=49.54 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=40.1
Q ss_pred EEEEEEec-CCceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCEe
Q 012857 365 VVEIQYSG-DGEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 433 (455)
Q Consensus 365 ~VTFtW~g-~AkeV~VtGSFNNW~~----~IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIVDGeW 433 (455)
.|+|.... .|+.|.|. -|++|.. .++|.+ +..|+|.+.+. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPE------------RTDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc------------CCCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 47885555 49999985 6766542 357765 36789999995 777774 999999854
No 47
>PLN02950 4-alpha-glucanotransferase
Probab=88.12 E-value=2.5 Score=48.89 Aligned_cols=67 Identities=18% Similarity=0.440 Sum_probs=46.4
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 012857 364 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 431 (455)
Q Consensus 364 v~VTFtW~g---~AkeV~VtGSF---NNW~~~--IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG-~YEYKFIV---DG 431 (455)
+.|+|.-++ -|+.|+|+|+- .+|+.. ++|... .......|++++.||.| ..+|||+| +|
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g 79 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK 79 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence 566665543 38999999998 489854 567532 11134489999999988 69999995 34
Q ss_pred E---eeeCCCC
Q 012857 432 Q---WKVDPQR 439 (455)
Q Consensus 432 e---W~~DPd~ 439 (455)
. |-..++.
T Consensus 80 ~vi~WE~g~NR 90 (909)
T PLN02950 80 NVLRWEAGKKR 90 (909)
T ss_pred ceeeeecCCCe
Confidence 3 7666543
No 48
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=85.21 E-value=2.2 Score=50.41 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=46.5
Q ss_pred EEEEEec-CCceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-----eEEEEEEEcC---
Q 012857 366 VEIQYSG-DGEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG--- 431 (455)
Q Consensus 366 VTFtW~g-~AkeV~VtGS-FNNW~~---~IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG-----~YEYKFIVDG--- 431 (455)
++|+... .|.+|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~ 396 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGGD 396 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCCc
Confidence 7885554 5999999984 456654 4688763 6899999986 4443 4789999976
Q ss_pred -EeeeCCCCCee
Q 012857 432 -QWKVDPQRESV 442 (455)
Q Consensus 432 -eW~~DPd~Ptv 442 (455)
....||....+
T Consensus 397 ~~~~~DPYA~al 408 (1111)
T TIGR02102 397 KVLALDPYAKSL 408 (1111)
T ss_pred eEEEeChhheEE
Confidence 45778876543
No 49
>PRK03705 glycogen debranching enzyme; Provisional
Probab=83.29 E-value=2.6 Score=47.11 Aligned_cols=55 Identities=25% Similarity=0.445 Sum_probs=39.8
Q ss_pred EEEEEEec-CCceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCEe
Q 012857 365 VVEIQYSG-DGEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 433 (455)
Q Consensus 365 ~VTFtW~g-~AkeV~VtGSFNNW~--~~IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIVDGeW 433 (455)
.|+|+... .|+.|.|.. |+++. ..++|.+ +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 47885544 499999987 77653 2467865 36789999985 56665 5999999853
No 50
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=83.22 E-value=3.9 Score=47.44 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=46.9
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc------CE-
Q 012857 364 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 432 (455)
Q Consensus 364 v~VTFtW~g~-AkeV~VtGSFNNW~--~~IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIVD------Ge- 432 (455)
..++|+..++ ++.|.|.+.+++|. ..++|.+. ...|+|++.+. ...|. .|+|.|+ |.
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeE
Confidence 3678865554 99999997776664 23678763 25799999985 45564 3777775 54
Q ss_pred ---eeeCCCCCeec
Q 012857 433 ---WKVDPQRESVT 443 (455)
Q Consensus 433 ---W~~DPd~Ptvt 443 (455)
.+.||..-...
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 37788776654
No 51
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=80.96 E-value=8.9 Score=31.80 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=36.8
Q ss_pred eEEEEEEe---cCCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 012857 364 EVVEIQYS---GDGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 429 (455)
Q Consensus 364 v~VTFtW~---g~AkeV~VtGSFNN--W~-~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKFIV 429 (455)
.+|+|+.. ++...|.|.-.-+. |. ..++|.+... +.....|++++.++.|.+.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence 34555443 23678888655443 22 2478876521 112246999999888999999999
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=69.69 E-value=16 Score=43.81 Aligned_cols=56 Identities=27% Similarity=0.422 Sum_probs=41.2
Q ss_pred eEEEEEEe-cCCceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCEe
Q 012857 364 EVVEIQYS-GDGEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 433 (455)
Q Consensus 364 v~VTFtW~-g~AkeV~VtGSFNNW~~~----IpMkKd~ss~~~~~~~tkesGvFsitL~-LPPG~YEYKFIVDGeW 433 (455)
..|+|... ..++.|.|. -|+.|... ++|.. +..++|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 35888554 459999997 89988642 45543 35789998875 78887 6999999854
No 53
>PLN03244 alpha-amylase; Provisional
Probab=62.37 E-value=6.1 Score=45.76 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=41.4
Q ss_pred EEEE-EEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE--EeCCe----eE---EEEEEEc
Q 012857 365 VVEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPG----TY---EIKFIVD 430 (455)
Q Consensus 365 ~VTF-tW~g~AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL--~LPPG----~Y---EYKFIVD 430 (455)
.++| .|..+|.--.|+|+||||.+.-..-+. +..++.+=|+|.+.+ .|..| .| ||.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAARE------GHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCcccccccc------ccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 4555 888889999999999999976433321 112445788999988 47777 33 5666544
No 54
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=54.28 E-value=28 Score=30.04 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=41.1
Q ss_pred eEEEEEEe-cCCceEEEE-eeeCCC----c-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--cCE-e
Q 012857 364 EVVEIQYS-GDGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ-W 433 (455)
Q Consensus 364 v~VTFtW~-g~AkeV~Vt-GSFNNW----~-~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKFIV--DGe-W 433 (455)
..|.|+-. ++.++|.|. |+-..| . ..++|.+.. .+..-..|++++.++..+..|.|.| +|+ |
T Consensus 23 l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~--------~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~ 94 (120)
T PF02903_consen 23 LHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIA--------SDELFDYYEATLKLPEKRLRYYFELEDGGETY 94 (120)
T ss_dssp EEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEE--------EESSEEEEEEEEE-TTSEEEEEEEEEETTEEE
T ss_pred EEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEE--------eCCCeEEEEEEEECCCCeEEEEEEEEeCCEEE
Confidence 34444443 457888885 666666 1 236787742 1223447899999999988888887 344 5
Q ss_pred eeCCCC
Q 012857 434 KVDPQR 439 (455)
Q Consensus 434 ~~DPd~ 439 (455)
.++...
T Consensus 95 ~y~~~G 100 (120)
T PF02903_consen 95 YYGERG 100 (120)
T ss_dssp EEETTE
T ss_pred EEeCCc
Confidence 555444
No 55
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=53.42 E-value=17 Score=41.16 Aligned_cols=63 Identities=30% Similarity=0.350 Sum_probs=49.9
Q ss_pred hHhhhccchhh-------hHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhccccccccccchH
Q 012857 289 SEARRRENQLE-------IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDE 351 (455)
Q Consensus 289 ~~~~~~~n~~e-------~~~l~~ml~qkele~~r~k~qie~~K~~La~l~~k~~~ei~~Aqkll~eK~~ 351 (455)
+|+.|.+=+.| |++||..+-|+++|+++||.+||.+.-++.-+....-.++.-...||-.+.+
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~p 167 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIP 167 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCc
Confidence 45555555555 4678999999999999999999999999888877777777777777766655
No 56
>PLN02877 alpha-amylase/limit dextrinase
Probab=52.94 E-value=39 Score=40.05 Aligned_cols=64 Identities=14% Similarity=0.298 Sum_probs=41.3
Q ss_pred EEEEEEec-CCceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEEe-CCeeEEEEEEEc------C
Q 012857 365 VVEIQYSG-DGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWL-YPGTYEIKFIVD------G 431 (455)
Q Consensus 365 ~VTFtW~g-~AkeV~VtGSFNNW~~~-----IpMkKd~ss~~~~~~~tkesGvFsitL~L-PPG~YEYKFIVD------G 431 (455)
.++|+... .++.|.|.- |++|... ++|. ...|+|++.+.- ..| +.|+|.|+ |
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~g 287 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEG-CYYVYEVSVYHPSTG 287 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCC-CeeEEEEeecccCCC
Confidence 67885544 499999984 6665321 3454 268999999863 455 45788886 3
Q ss_pred E----eeeCCCCCeec
Q 012857 432 Q----WKVDPQRESVT 443 (455)
Q Consensus 432 e----W~~DPd~Ptvt 443 (455)
. ...||......
T Consensus 288 ~~~~~~v~DPYA~als 303 (970)
T PLN02877 288 KVETCYANDPYARGLS 303 (970)
T ss_pred cccccccCCccceEEe
Confidence 2 24677766544
No 57
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=49.95 E-value=31 Score=29.95 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=40.8
Q ss_pred EEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe--------eEEEEEEEcCE--
Q 012857 365 VVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--------TYEIKFIVDGQ-- 432 (455)
Q Consensus 365 ~VTFtW~g~--AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG--------~YEYKFIVDGe-- 432 (455)
..++.-..- .+.|.|.=+|++|.....+.-....+............|...+.|++. .+-.+|.++|.
T Consensus 22 ~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ey 101 (113)
T PF03370_consen 22 SGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQEY 101 (113)
T ss_dssp EEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEEE
T ss_pred EEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCEE
Confidence 344444443 588999999999986543311000000000111233478888888754 57889999996
Q ss_pred eeeCCC
Q 012857 433 WKVDPQ 438 (455)
Q Consensus 433 W~~DPd 438 (455)
|-.+..
T Consensus 102 WDNN~g 107 (113)
T PF03370_consen 102 WDNNNG 107 (113)
T ss_dssp EESTTT
T ss_pred ecCCCc
Confidence 654433
No 58
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=46.28 E-value=44 Score=27.75 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=38.3
Q ss_pred eEEEEEEecC---CceEEEEeee-CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-c-CEeeeC
Q 012857 364 EVVEIQYSGD---GEIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 436 (455)
Q Consensus 364 v~VTFtW~g~---AkeV~VtGSF-NNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKFIV-D-GeW~~D 436 (455)
-.|.|.+.++ -..|+|.+.= ..| .+|.+. -...|.+.-.++.|-+.+|+-. | |+|..-
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 4577777765 3679999544 457 488863 4568998777778889999988 7 887653
No 59
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=45.32 E-value=23 Score=27.29 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhcCCCCC-CCCChHHHHHhch
Q 012857 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGR 93 (455)
Q Consensus 62 ~el~~d~~ef~s~~~lp~~-~vpsmkel~~hgr 93 (455)
+.++..|++.+.+-.+|+| .+||..+|.++=.
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~~ 35 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERYG 35 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHhc
Confidence 4678899999999999998 6899999998633
No 60
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=43.92 E-value=45 Score=35.57 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=30.3
Q ss_pred EEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE--EeCCeeEEEEEEEcCE
Q 012857 378 EVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGTYEIKFIVDGQ 432 (455)
Q Consensus 378 ~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL--~LPPG~YEYKFIVDGe 432 (455)
.+.|+|.+ ....+... ..+|+|+..+ ..+||.|+.++.+||.
T Consensus 152 ~vvg~f~D--dG~g~DE~-----------p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED--DGEGLDER-----------PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc--CCccCCCC-----------CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 47788853 23445432 3789998776 4679999999999984
No 61
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=43.72 E-value=67 Score=29.49 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=35.4
Q ss_pred CCceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEE
Q 012857 361 SGLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 427 (455)
Q Consensus 361 sgLv~VTFtW~g~-AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LPPG~YEYKF 427 (455)
+---+|+|.|... +..|...+...-|... .+.- +.+..|+.++.- ||.|.|+=
T Consensus 59 ~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~------------~~~~s~~~Tfe~-~G~Y~Y~C 112 (128)
T COG3794 59 KPGDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA------------GINESFTHTFET-PGEYTYYC 112 (128)
T ss_pred CCCCEEEEEECCCCCceEEEeCCCCccccc-cccc------------CCCcceEEEecc-cceEEEEe
Confidence 3345899999887 9999999988555432 2221 133456666655 99999863
No 62
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=40.18 E-value=69 Score=29.33 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhcCCCCC-CCCChHHHHHhchhhHHHHHHhhhHHHHHH
Q 012857 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQ 110 (455)
Q Consensus 62 ~el~~d~~ef~s~~~lp~~-~vpsmkel~~hgr~dlan~vrrrgyk~i~~ 110 (455)
+-+++-|++=+.+=-|+|| +|||++||-.+=.+-.. -| .|+|+-..+
T Consensus 14 ~QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpn-Tv-~raY~eLE~ 61 (125)
T COG1725 14 EQIANQIKEQIASGELKPGDKLPSVRELAKDLGVNPN-TV-QRAYQELER 61 (125)
T ss_pred HHHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHH-HH-HHHHHHHHH
Confidence 3466777777777777777 69999999887666654 33 457765543
No 63
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=39.78 E-value=29 Score=39.98 Aligned_cols=42 Identities=24% Similarity=0.508 Sum_probs=30.0
Q ss_pred EEEE-EecCCceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEe
Q 012857 366 VEIQ-YSGDGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWL 418 (455)
Q Consensus 366 VTFt-W~g~AkeV~VtGSFNNW~~~I-pMkKd~ss~~~~~~~tkesGvFsitL~L 418 (455)
|.|+ |...+..|.++|+||+|+... .|.. ....|.|++.+.-
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-----------k~~~g~w~i~l~~ 158 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-----------KDDLGVWEIDLPP 158 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-----------ccccceeEEecCc
Confidence 7774 545589999999999998642 2331 1468889988763
No 64
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=38.88 E-value=40 Score=24.29 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCCC-CCCChHHHHHhchhhH
Q 012857 65 YNDLREFLSTVGLSES-HVPSMKELSAHGRDDL 96 (455)
Q Consensus 65 ~~d~~ef~s~~~lp~~-~vpsmkel~~hgr~dl 96 (455)
+..|+..+....+++| .+||.+||+++=....
T Consensus 2 ~~~l~~~i~~~~~~~~~~l~s~~~la~~~~vs~ 34 (60)
T smart00345 2 AERLREDIVSGELRPGDKLPSERELAAQLGVSR 34 (60)
T ss_pred HHHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCH
Confidence 5667777777777655 6899999998754443
No 65
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.35 E-value=26 Score=38.88 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=20.9
Q ss_pred CCCcEEEEEEeCCe-eEEEEEEEcC
Q 012857 408 KSRLWSTVLWLYPG-TYEIKFIVDG 431 (455)
Q Consensus 408 esGvFsitL~LPPG-~YEYKFIVDG 431 (455)
.+|.|-+.+.++|| .|.|+|.||+
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~ 120 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKD 120 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCC
Confidence 46688899999999 7999999993
No 66
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=34.62 E-value=65 Score=23.11 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHhchhhHHHHHHh
Q 012857 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRR 102 (455)
Q Consensus 66 ~d~~ef~s~~~lp~~~vpsmkel~~hgr~dlan~vrr 102 (455)
+||++|+...|+|...-. .-|.+|-+.||.
T Consensus 7 ~~L~~wL~~~gi~~~~~~-------~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-------KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-------CCHHHHHHHHHH
Confidence 689999999999876654 456677676664
No 67
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=32.26 E-value=32 Score=25.59 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=13.6
Q ss_pred chhhHHHHHHhhhHHHH
Q 012857 92 GRDDLANIVRRRGYKFI 108 (455)
Q Consensus 92 gr~dlan~vrrrgyk~i 108 (455)
-..+++.+.|..||.|=
T Consensus 28 ~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFT 44 (49)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 45677888999999884
No 68
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=31.79 E-value=44 Score=27.64 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=29.1
Q ss_pred CCCCCCCChHHHHHhchhhHHHHHHhhhHHHHHHH
Q 012857 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (455)
Q Consensus 77 lp~~~vpsmkel~~hgr~dlan~vrrrgyk~i~~l 111 (455)
+|-.|+++..||.+..+.+|+.+++ ++.+.+++.
T Consensus 42 iPk~h~~~~~~l~~~~~~~l~~~~~-~~~~~l~~~ 75 (104)
T cd01278 42 IPKEHIASLKALTKEDVPLLEHMET-VGREKLLRS 75 (104)
T ss_pred EecCCCCChHHCCHhHHHHHHHHHH-HHHHHHHHH
Confidence 5778999999999999999999988 777766654
No 69
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=31.13 E-value=78 Score=30.51 Aligned_cols=39 Identities=31% Similarity=0.756 Sum_probs=22.4
Q ss_pred CCCccccccCCCCCCCccccccccCCCcEEEEEEeC-CeeEEEEEE--Ec--CEeee
Q 012857 384 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY-PGTYEIKFI--VD--GQWKV 435 (455)
Q Consensus 384 NNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LP-PG~YEYKFI--VD--GeW~~ 435 (455)
..|. .+||... .+..|...+.+. +|.|+|+.. +| +.|++
T Consensus 55 ~~w~-~vpM~~~------------gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~ 98 (187)
T PF11896_consen 55 REWQ-EVPMTPL------------GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRH 98 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHH
T ss_pred Ccce-eeccccC------------CCCEEEEEEECCCceeEEEEEEEEeccHHHHHH
Confidence 4686 4899863 678999999875 899999976 45 45654
No 70
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=30.21 E-value=17 Score=30.77 Aligned_cols=13 Identities=62% Similarity=1.595 Sum_probs=0.0
Q ss_pred ccccCCCCCceeeEEEeec
Q 012857 19 LWQWHPPRKHLSFTICCAS 37 (455)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (455)
+||||| |||..++
T Consensus 47 ~~q~HP------FTIas~~ 59 (105)
T PF08022_consen 47 FWQWHP------FTIASSP 59 (105)
T ss_dssp -------------------
T ss_pred cccccc------cEeeccC
Confidence 799998 7775443
No 71
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.23 E-value=34 Score=35.25 Aligned_cols=31 Identities=35% Similarity=0.382 Sum_probs=24.6
Q ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 012857 297 QLEIDHLKFMLHQKEMELSRLKEQIEKEKLA 327 (455)
Q Consensus 297 ~~e~~~l~~ml~qkele~~r~k~qie~~K~~ 327 (455)
..||++|+-|||||.+++..--.||-+-|+-
T Consensus 231 keeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 231 KEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 4589999999999999987776676655553
No 72
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=25.58 E-value=86 Score=29.37 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHhcCCCCCC-CCChHHHHHhc
Q 012857 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (455)
Q Consensus 61 ~~el~~d~~ef~s~~~lp~~~-vpsmkel~~hg 92 (455)
=+.+.++|++-+..-.+|+|. +||.+||.++=
T Consensus 10 y~~i~~~l~~~I~~g~~~~G~~LPsE~eLa~~~ 42 (238)
T TIGR02325 10 WRQIADKIEQEIAAGHLRAGDYLPAEMQLAERF 42 (238)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH
Confidence 367889999999988898886 99999999863
No 73
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=25.55 E-value=1.4e+02 Score=24.91 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=9.7
Q ss_pred cEEEEE-EeCCeeEEEE
Q 012857 411 LWSTVL-WLYPGTYEIK 426 (455)
Q Consensus 411 vFsitL-~LPPG~YEYK 426 (455)
.+++++ .+.||.|+|-
T Consensus 75 ~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 75 TATVTFTPLKPGEYEFY 91 (104)
T ss_dssp EEEEEEEE-S-EEEEEB
T ss_pred EEEEEEcCCCCEEEEEE
Confidence 455565 7899998873
No 74
>PRK10785 maltodextrin glucosidase; Provisional
Probab=24.62 E-value=2.6e+02 Score=30.98 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=38.2
Q ss_pred ceEEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeC--CeeEEEEEEE--cCE
Q 012857 363 LEVVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 432 (455)
Q Consensus 363 Lv~VTFtW~g~--AkeV~VtGSFNNW~~~IpMkKd~ss~~~~~~~tkesGvFsitL~LP--PG~YEYKFIV--DGe 432 (455)
...++++-..+ ...|.|.=.+++-...++|.+... +.....|++++.++ ++++.|.|.| +|+
T Consensus 20 ~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 20 QLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRS--------QPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred EEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeec--------CCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 34555544332 467888655555444578887521 11233688999885 7888898888 554
No 75
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=24.44 E-value=1.3e+02 Score=33.07 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=36.1
Q ss_pred HHhhhhccccccccccchH-----HHHHHHhhcCCceEEEEEEecCCceEEEEeeeCC
Q 012857 333 TKAVTEINKAEKLISDKDE-----ELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNG 385 (455)
Q Consensus 333 ~k~~~ei~~Aqkll~eK~~-----eLdaAe~aLsgLv~VTFtW~g~AkeV~VtGSFNN 385 (455)
.....++...++.+.-|-+ .+.-...+..+.+|+.+.--....++.++|||.|
T Consensus 140 ~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG 197 (459)
T KOG0272|consen 140 ARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSG 197 (459)
T ss_pred HHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCC
Confidence 3344455555555544333 4444556678889999988877888999999986
No 76
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=24.23 E-value=94 Score=29.30 Aligned_cols=30 Identities=30% Similarity=0.508 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 012857 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (455)
Q Consensus 62 ~el~~d~~ef~s~~~lp~~~-vpsmkel~~h 91 (455)
..+.++|++-+..-.+++|. +||-+||.++
T Consensus 3 ~qi~~~l~~~I~~g~~~~G~~LPsE~eLa~~ 33 (233)
T TIGR02404 3 EQIYQDLEQKITHGQYKEGDYLPSEHELMDQ 33 (233)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 46788999999999999986 9999999986
No 77
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=24.21 E-value=2.4e+02 Score=25.15 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.0
Q ss_pred eEEEEEEecCCceEEE
Q 012857 364 EVVEIQYSGDGEIVEV 379 (455)
Q Consensus 364 v~VTFtW~g~AkeV~V 379 (455)
-+|+|.|...+..|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 3788888776665554
No 78
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=24.19 E-value=1.2e+02 Score=25.99 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=24.6
Q ss_pred CCCcEEEEEEeCCeeEEEEEEEcCEeeeCCCCCe
Q 012857 408 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 441 (455)
Q Consensus 408 esGvFsitL~LPPG~YEYKFIVDGeW~~DPd~Pt 441 (455)
..|.=++.+.|+||+|....+. |.+.+-|..|.
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 3555667889999999999887 55666666554
No 79
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.90 E-value=71 Score=35.95 Aligned_cols=28 Identities=21% Similarity=0.519 Sum_probs=23.6
Q ss_pred EeCCeeEEEEEEEcCEeee---CCCCCeecc
Q 012857 417 WLYPGTYEIKFIVDGQWKV---DPQRESVTK 444 (455)
Q Consensus 417 ~LPPG~YEYKFIVDGeW~~---DPd~PtvtD 444 (455)
.-+.|.|++||-++|+|+. |+..|+..+
T Consensus 113 ~~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 113 ENYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred cccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 3467999999999999975 888888764
No 80
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=22.61 E-value=83 Score=26.84 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=41.9
Q ss_pred hhhhHHHHHhhhH--HHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccc
Q 012857 297 QLEIDHLKFMLHQ--KEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISD 348 (455)
Q Consensus 297 ~~e~~~l~~ml~q--kele~~r~k~qie~~K~~La~l~~k~~~ei~~Aqkll~e 348 (455)
+-+-+++..|-.. .+-++.+..+-+++|+.++.-++.+..-++.+-+.+|.+
T Consensus 24 ~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~ 77 (90)
T PF02970_consen 24 EEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEE 77 (90)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665 788899999999999999999999999988888777654
No 81
>TIGR03337 phnR transcriptional regulator protein. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii.
Probab=22.35 E-value=1.6e+02 Score=27.45 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CCChHHHHHhchh
Q 012857 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRD 94 (455)
Q Consensus 62 ~el~~d~~ef~s~~~lp~~~-vpsmkel~~hgr~ 94 (455)
+.+.++|++-+..-++++|. +||.+||.+.=.+
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~lPsE~eLa~~~~V 37 (231)
T TIGR03337 4 LYIKDHLSYQIRAGALLPGDKLPSERDLGERFNT 37 (231)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCC
Confidence 46788999999999998885 9999999987444
No 82
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=21.64 E-value=1.5e+02 Score=32.84 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=41.5
Q ss_pred CCcccccchHhhhccchhhhHH---HHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhccccc
Q 012857 281 VEGADFDSSEARRRENQLEIDH---LKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAE 343 (455)
Q Consensus 281 ~~~~~~d~~~~~~~~n~~e~~~---l~~ml~qkele~~r~k~qie~~K~~La~l~~k~~~ei~~Aq 343 (455)
..+..+||+..-.++.|.+-.+ .+....|++-++.+.+.+.++.+..+..-+..+.-+..+|+
T Consensus 193 ~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 193 GIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4466788966666666655544 45888888888888888877777666554444444444433
No 83
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=21.24 E-value=96 Score=25.68 Aligned_cols=35 Identities=20% Similarity=0.505 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHhchhhHHHHHHhhhHH
Q 012857 67 DLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK 106 (455)
Q Consensus 67 d~~ef~s~~~lp~~~vpsmkel~~hgr~dlan~vrrrgyk 106 (455)
=+..|+...| .|+.+.|.+-+-.||..++|+.||.
T Consensus 17 ~~~~l~~~~g-----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 17 IYRRLFERYG-----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp HHHHHHHHHS-----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred HHHHHHHHhc-----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 3567778888 8999999999999999999999976
No 84
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=21.22 E-value=1.2e+02 Score=26.13 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHH-------hhhhccccccccccchH
Q 012857 308 HQKEMELSRLKEQIEKEKLALSVLQTK-------AVTEINKAEKLISDKDE 351 (455)
Q Consensus 308 ~qkele~~r~k~qie~~K~~La~l~~k-------~~~ei~~Aqkll~eK~~ 351 (455)
...+.|..|+...+++++..|.-|..+ ...+|.+||.++.+-+.
T Consensus 31 ~~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~ 81 (123)
T PF05524_consen 31 DDIEAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPE 81 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHh
Confidence 444445555555555555555444443 34478888888876444
No 85
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=20.79 E-value=1.2e+02 Score=28.53 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CCChHHHHHhc
Q 012857 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (455)
Q Consensus 62 ~el~~d~~ef~s~~~lp~~~-vpsmkel~~hg 92 (455)
+++..+|++-+..-.+++|. +||-+||.+.=
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~LPsE~eLa~~~ 35 (230)
T TIGR02018 4 QRIKQDILERIRSGEWPPGHRIPSEHELVAQY 35 (230)
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHH
Confidence 46788999999998998886 99999998753
No 86
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=20.18 E-value=97 Score=23.34 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=14.4
Q ss_pred EEE-EEeCCeeEEEEEEE---cCEeeeCC
Q 012857 413 STV-LWLYPGTYEIKFIV---DGQWKVDP 437 (455)
Q Consensus 413 sit-L~LPPG~YEYKFIV---DGeW~~DP 437 (455)
.+. ..||||.|.++-.+ +|.|..++
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 444 47999999988776 47787664
No 87
>PRK14999 histidine utilization repressor; Provisional
Probab=20.14 E-value=1.2e+02 Score=28.77 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHhcCCCCCC-CCChHHHHHhc
Q 012857 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (455)
Q Consensus 61 ~~el~~d~~ef~s~~~lp~~~-vpsmkel~~hg 92 (455)
=..+.++|++-+..-.+++|. +||-+||.+.=
T Consensus 14 y~qi~~~i~~~I~~g~~~~G~~LPsE~eLa~~~ 46 (241)
T PRK14999 14 YETVKQDICKKIAGGVWQPHDRIPSEAELVAQY 46 (241)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHH
Confidence 477889999999999999996 99999999863
Done!