Query 012858
Match_columns 455
No_of_seqs 274 out of 689
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:35:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 3.5E-42 1.2E-46 293.9 10.2 92 18-109 12-103 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 3.3E-41 1.1E-45 291.6 9.3 95 15-110 11-107 (111)
3 2yus_A SWI/SNF-related matrix- 99.7 9.2E-17 3.2E-21 131.0 8.9 60 249-308 16-75 (79)
4 2elk_A SPCC24B10.08C protein; 99.4 1.9E-13 6.5E-18 104.8 6.2 49 250-298 8-58 (58)
5 1x41_A Transcriptional adaptor 99.3 1.5E-12 5E-17 100.4 6.4 50 249-298 6-56 (60)
6 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1E-11 3.4E-16 99.8 5.5 62 235-300 5-70 (73)
7 1gvd_A MYB proto-oncogene prot 99.1 8.2E-11 2.8E-15 87.8 6.4 44 251-294 3-47 (52)
8 1guu_A C-MYB, MYB proto-oncoge 99.1 6.8E-11 2.3E-15 88.1 5.6 44 251-294 3-47 (52)
9 2d9a_A B-MYB, MYB-related prot 99.1 1.5E-10 5E-15 88.9 7.1 46 249-294 6-52 (60)
10 2cu7_A KIAA1915 protein; nucle 99.1 1.7E-10 5.7E-15 91.9 6.4 46 249-294 7-52 (72)
11 1w0t_A Telomeric repeat bindin 99.1 1.5E-10 5.2E-15 86.8 5.8 44 251-294 2-48 (53)
12 2yum_A ZZZ3 protein, zinc fing 99.1 8.5E-11 2.9E-15 94.1 4.4 46 249-294 6-57 (75)
13 2dim_A Cell division cycle 5-l 99.0 3.6E-10 1.2E-14 89.4 7.1 46 249-294 7-53 (70)
14 1wgx_A KIAA1903 protein; MYB D 99.0 2.5E-10 8.6E-15 91.6 6.1 46 250-295 7-56 (73)
15 3sjm_A Telomeric repeat-bindin 99.0 4.7E-10 1.6E-14 87.7 5.8 45 250-294 10-57 (64)
16 1ity_A TRF1; helix-turn-helix, 99.0 1E-09 3.6E-14 86.5 6.7 45 250-294 9-56 (69)
17 2din_A Cell division cycle 5-l 98.9 1.7E-09 6E-14 84.4 5.1 45 249-294 7-51 (66)
18 2eqr_A N-COR1, N-COR, nuclear 98.9 3.8E-09 1.3E-13 81.6 6.7 45 250-294 11-55 (61)
19 2cjj_A Radialis; plant develop 98.8 2.4E-09 8.1E-14 89.8 5.2 46 250-295 7-56 (93)
20 2llk_A Cyclin-D-binding MYB-li 98.8 3.9E-09 1.3E-13 84.7 6.3 46 249-295 21-66 (73)
21 2ltp_A Nuclear receptor corepr 98.3 4.5E-10 1.5E-14 93.2 0.0 46 249-294 14-59 (89)
22 1gv2_A C-MYB, MYB proto-oncoge 98.7 1.2E-08 4E-13 86.3 6.5 45 250-294 3-48 (105)
23 2k9n_A MYB24; R2R3 domain, DNA 98.7 1.1E-08 3.6E-13 87.2 6.2 43 252-294 2-45 (107)
24 3osg_A MYB21; transcription-DN 98.7 1.4E-08 4.9E-13 88.8 6.1 46 249-294 9-54 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 98.7 1.6E-08 5.6E-13 85.4 5.9 45 250-294 55-99 (105)
26 2k9n_A MYB24; R2R3 domain, DNA 98.7 1.7E-08 5.8E-13 85.9 5.8 45 250-294 52-96 (107)
27 3osg_A MYB21; transcription-DN 98.7 1.8E-08 6E-13 88.3 5.9 45 250-294 61-105 (126)
28 1h8a_C AMV V-MYB, MYB transfor 98.7 3.4E-08 1.2E-12 86.4 7.1 46 249-294 25-71 (128)
29 1h8a_C AMV V-MYB, MYB transfor 98.6 4.6E-08 1.6E-12 85.6 6.9 46 250-295 78-123 (128)
30 2ckx_A NGTRF1, telomere bindin 98.6 3.6E-08 1.2E-12 81.0 5.6 43 252-294 1-48 (83)
31 2iw5_B Protein corest, REST co 98.6 3.1E-08 1.1E-12 94.7 6.0 45 250-294 132-176 (235)
32 3zqc_A MYB3; transcription-DNA 98.6 2.3E-08 7.8E-13 88.0 4.7 44 251-294 2-46 (131)
33 3zqc_A MYB3; transcription-DNA 98.6 5.4E-08 1.8E-12 85.6 6.4 45 250-294 53-97 (131)
34 4gut_A Lysine-specific histone 98.6 1.1E-07 3.8E-12 105.8 9.6 88 16-109 216-322 (776)
35 2yqk_A Arginine-glutamic acid 98.5 1.6E-07 5.5E-12 73.0 6.9 45 249-293 7-52 (63)
36 2z3y_A Lysine-specific histone 98.5 5.6E-08 1.9E-12 105.7 5.2 87 22-110 8-98 (662)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.5 1.3E-07 4.4E-12 75.6 5.1 50 250-301 7-60 (72)
38 1h89_C C-MYB, MYB proto-oncoge 98.4 2.9E-07 1E-11 83.3 6.8 46 250-295 109-154 (159)
39 1h89_C C-MYB, MYB proto-oncoge 98.4 4.5E-07 1.5E-11 82.0 6.8 45 250-294 57-102 (159)
40 2xag_B REST corepressor 1; ami 98.4 3.1E-07 1.1E-11 96.6 6.1 45 250-294 379-423 (482)
41 2aje_A Telomere repeat-binding 98.3 3.6E-07 1.2E-11 78.1 5.1 45 250-294 12-61 (105)
42 2roh_A RTBP1, telomere binding 98.3 3.9E-07 1.4E-11 79.8 5.3 45 250-294 30-79 (122)
43 2crg_A Metastasis associated p 98.3 8.8E-07 3E-11 70.3 6.0 43 251-293 8-51 (70)
44 4eef_G F-HB80.4, designed hema 98.3 1.3E-07 4.4E-12 75.6 0.3 42 251-292 20-65 (74)
45 2juh_A Telomere binding protei 98.2 5.8E-07 2E-11 78.6 4.1 46 249-294 15-65 (121)
46 4a69_C Nuclear receptor corepr 98.2 1.8E-06 6E-11 72.3 6.1 43 251-293 43-85 (94)
47 1x58_A Hypothetical protein 49 98.1 2.6E-06 8.8E-11 66.1 5.1 46 250-295 7-55 (62)
48 1ign_A Protein (RAP1); RAP1,ye 97.9 9.7E-06 3.3E-10 78.2 4.6 45 250-294 7-57 (246)
49 2xag_A Lysine-specific histone 97.7 2.8E-05 9.7E-10 87.4 5.8 87 22-110 179-269 (852)
50 2e5r_A Dystrobrevin alpha; ZZ 97.6 5.3E-05 1.8E-09 58.9 4.8 47 196-242 12-61 (63)
51 2dip_A Zinc finger SWIM domain 97.3 0.00012 4.1E-09 61.7 3.3 56 193-258 29-86 (98)
52 2fc7_A ZZZ3 protein; structure 97.2 0.00037 1.3E-08 56.8 5.2 53 193-245 19-77 (82)
53 3hm5_A DNA methyltransferase 1 96.8 0.0015 5.1E-08 54.5 5.6 44 251-294 30-78 (93)
54 1fex_A TRF2-interacting telome 96.6 0.002 6.9E-08 49.3 4.2 44 251-294 2-55 (59)
55 1ug2_A 2610100B20RIK gene prod 96.6 0.0025 8.5E-08 52.8 4.9 44 252-295 34-80 (95)
56 1tot_A CREB-binding protein; z 96.5 0.0011 3.9E-08 49.4 2.4 44 194-243 5-49 (52)
57 2cuj_A Transcriptional adaptor 96.4 0.0077 2.6E-07 51.5 7.5 70 27-104 37-106 (108)
58 2aqe_A Transcriptional adaptor 96.4 0.0068 2.3E-07 50.1 6.6 70 27-104 19-88 (90)
59 2ebi_A DNA binding protein GT- 96.3 0.0016 5.6E-08 52.8 2.5 44 251-294 4-61 (86)
60 2elj_A Transcriptional adapter 96.1 0.014 4.8E-07 48.0 7.0 70 27-103 19-88 (88)
61 2lr8_A CAsp8-associated protei 94.6 0.0019 6.5E-08 50.8 0.0 43 252-295 15-60 (70)
62 2xag_B REST corepressor 1; ami 95.6 0.002 6.8E-08 67.9 0.0 44 251-294 189-232 (482)
63 1ofc_X ISWI protein; nuclear p 95.5 0.013 4.4E-07 58.6 5.3 41 252-292 111-152 (304)
64 4iej_A DNA methyltransferase 1 94.6 0.068 2.3E-06 44.5 6.3 44 251-294 30-78 (93)
65 4b4c_A Chromodomain-helicase-D 92.4 0.13 4.3E-06 47.8 5.0 29 251-279 134-163 (211)
66 1irz_A ARR10-B; helix-turn-hel 92.3 0.22 7.6E-06 38.7 5.4 43 251-293 7-54 (64)
67 2xb0_X Chromo domain-containin 92.0 0.094 3.2E-06 51.5 3.6 31 249-279 166-197 (270)
68 4b4c_A Chromodomain-helicase-D 89.8 0.33 1.1E-05 44.9 5.1 42 251-292 7-53 (211)
69 1ofc_X ISWI protein; nuclear p 85.0 0.59 2E-05 46.6 3.8 46 250-295 211-272 (304)
70 2y9y_A Imitation switch protei 84.1 1.1 3.7E-05 45.8 5.4 41 252-293 124-166 (374)
71 2fu4_A Ferric uptake regulatio 66.6 5 0.00017 30.9 3.7 49 58-106 18-71 (83)
72 2y9y_A Imitation switch protei 66.5 5.1 0.00017 40.9 4.6 46 250-295 227-288 (374)
73 2heo_A Z-DNA binding protein 1 63.6 8.6 0.00029 29.1 4.4 52 52-104 5-56 (67)
74 1mzb_A Ferric uptake regulatio 59.9 11 0.00036 32.3 4.8 48 58-105 19-71 (136)
75 2o03_A Probable zinc uptake re 56.6 15 0.00052 31.1 5.2 54 54-108 8-66 (131)
76 2w57_A Ferric uptake regulatio 51.6 12 0.00043 32.5 4.0 48 58-105 18-70 (150)
77 2xig_A Ferric uptake regulatio 51.6 18 0.00063 31.4 5.1 51 55-106 25-80 (150)
78 2htj_A P fimbrial regulatory p 51.4 18 0.00061 27.8 4.4 46 59-106 2-47 (81)
79 1ign_A Protein (RAP1); RAP1,ye 49.2 24 0.00081 34.0 5.7 22 272-293 173-194 (246)
80 2fe3_A Peroxide operon regulat 47.0 23 0.0008 30.5 5.0 48 58-106 23-75 (145)
81 3mwm_A ZUR, putative metal upt 46.1 25 0.00085 30.2 5.0 51 54-105 11-66 (139)
82 2xb0_X Chromo domain-containin 43.8 35 0.0012 33.2 6.1 42 251-292 3-49 (270)
83 3e7l_A Transcriptional regulat 42.8 18 0.00063 26.7 3.1 27 256-282 18-44 (63)
84 3eyy_A Putative iron uptake re 41.4 24 0.00084 30.4 4.2 46 58-105 20-70 (145)
85 1ovx_A ATP-dependent CLP prote 39.9 16 0.00055 28.5 2.4 33 195-227 18-50 (67)
86 3r0a_A Putative transcriptiona 39.7 50 0.0017 27.5 5.8 49 60-108 29-77 (123)
87 4ham_A LMO2241 protein; struct 39.3 54 0.0018 27.6 6.0 58 49-107 11-72 (134)
88 2ds5_A CLPX, ATP-dependent CLP 38.3 21 0.00071 26.3 2.7 31 196-226 12-42 (51)
89 2k4b_A Transcriptional regulat 37.8 47 0.0016 27.1 5.1 42 64-108 43-88 (99)
90 3nis_A E3 ubiquitin-protein li 37.4 22 0.00074 28.6 2.9 38 201-242 11-54 (82)
91 1v5n_A PDI-like hypothetical p 37.4 20 0.00068 29.0 2.7 32 195-226 47-78 (89)
92 3tqn_A Transcriptional regulat 36.6 48 0.0016 27.2 5.1 54 52-106 12-66 (113)
93 4ets_A Ferric uptake regulatio 36.0 38 0.0013 29.9 4.6 47 58-105 34-87 (162)
94 1qgp_A Protein (double strande 34.9 60 0.002 25.1 5.1 53 54-106 11-64 (77)
95 2d1h_A ST1889, 109AA long hypo 32.8 72 0.0025 24.6 5.4 38 72-109 35-72 (109)
96 3by6_A Predicted transcription 32.0 75 0.0026 26.6 5.7 53 52-105 14-67 (126)
97 3ny3_A E3 ubiquitin-protein li 31.9 28 0.00096 27.5 2.7 38 201-242 7-50 (75)
98 2crr_A Stromal membrane-associ 30.6 34 0.0012 30.1 3.3 84 195-294 29-119 (141)
99 2ek5_A Predicted transcription 30.3 50 0.0017 28.0 4.3 54 52-106 7-61 (129)
100 2oqg_A Possible transcriptiona 29.7 86 0.0029 24.8 5.5 48 58-108 22-69 (114)
101 2x4h_A Hypothetical protein SS 29.4 89 0.0031 25.6 5.7 54 51-107 12-65 (139)
102 2vn2_A DNAD, chromosome replic 29.3 57 0.0019 27.4 4.4 41 69-109 47-87 (128)
103 2li6_A SWI/SNF chromatin-remod 28.9 16 0.00055 30.8 0.9 44 261-305 53-106 (116)
104 1qbj_A Protein (double-strande 28.5 79 0.0027 24.9 4.8 48 59-106 12-60 (81)
105 2d8v_A Zinc finger FYVE domain 27.9 91 0.0031 24.2 4.8 45 194-241 7-52 (67)
106 3eco_A MEPR; mutlidrug efflux 27.9 80 0.0027 25.6 5.1 44 67-110 41-84 (139)
107 2owa_A Arfgap-like finger doma 27.9 41 0.0014 29.5 3.3 56 195-262 36-92 (138)
108 2pjp_A Selenocysteine-specific 27.8 92 0.0031 25.8 5.5 51 51-103 60-110 (121)
109 1xnl_A ASLV/FP, membrane prote 27.6 24 0.00083 22.8 1.3 21 383-403 7-27 (29)
110 2olm_A Nucleoporin-like protei 27.4 75 0.0026 27.8 4.9 56 195-263 25-81 (140)
111 3bro_A Transcriptional regulat 27.0 77 0.0026 25.7 4.8 41 69-109 46-86 (141)
112 2b0l_A GTP-sensing transcripti 26.7 49 0.0017 26.9 3.5 53 53-107 22-77 (102)
113 2dk5_A DNA-directed RNA polyme 26.5 73 0.0025 25.6 4.4 35 70-104 33-67 (91)
114 2kj5_A Phage integrase; GFT PS 26.2 41 0.0014 26.3 2.8 22 87-108 76-97 (116)
115 2frh_A SARA, staphylococcal ac 25.7 1.3E+02 0.0046 24.5 6.1 42 69-110 49-90 (127)
116 3cuo_A Uncharacterized HTH-typ 25.6 1.1E+02 0.0036 23.4 5.1 49 58-108 25-73 (99)
117 3neu_A LIN1836 protein; struct 25.0 72 0.0025 26.6 4.3 53 53-106 17-70 (125)
118 2qvo_A Uncharacterized protein 24.9 81 0.0028 24.6 4.4 35 69-103 26-60 (95)
119 1bja_A Transcription regulator 24.6 73 0.0025 26.2 4.1 35 68-104 27-62 (95)
120 2kj8_A Putative prophage CPS-5 24.4 1E+02 0.0034 24.4 4.9 48 58-105 34-93 (118)
121 1cf7_A Protein (transcription 24.3 1.2E+02 0.0041 23.7 5.1 48 56-104 14-62 (76)
122 3dpt_A ROCO, RAB family protei 24.1 67 0.0023 31.9 4.5 58 50-109 13-74 (332)
123 4b8x_A SCO5413, possible MARR- 24.0 82 0.0028 26.5 4.6 43 68-110 46-88 (147)
124 2jt1_A PEFI protein; solution 23.6 1.5E+02 0.0051 23.1 5.6 55 53-107 4-58 (77)
125 1oyi_A Double-stranded RNA-bin 23.5 1.2E+02 0.0042 24.1 5.1 49 57-108 17-65 (82)
126 2p57_A GTPase-activating prote 23.4 39 0.0013 29.9 2.4 58 194-262 36-94 (144)
127 1y0u_A Arsenical resistance op 23.3 1.2E+02 0.0041 23.6 5.1 45 58-106 32-76 (96)
128 1umq_A Photosynthetic apparatu 23.1 58 0.002 25.8 3.1 29 254-282 38-66 (81)
129 3sub_A ADP-ribosylation factor 23.1 46 0.0016 30.2 2.8 56 195-262 22-78 (163)
130 1sfx_A Conserved hypothetical 23.0 1.1E+02 0.0037 23.4 4.8 36 73-108 34-69 (109)
131 3c7j_A Transcriptional regulat 22.8 39 0.0013 31.4 2.4 58 49-107 26-83 (237)
132 1sd4_A Penicillinase repressor 22.4 89 0.003 25.2 4.3 44 62-108 16-63 (126)
133 1lva_A Selenocysteine-specific 22.4 1.3E+02 0.0046 28.2 6.1 54 51-104 135-188 (258)
134 1ub9_A Hypothetical protein PH 22.1 1.4E+02 0.0047 22.7 5.2 49 58-108 17-65 (100)
135 2crw_A ARF GAP 3, ADP-ribosyla 21.8 86 0.0029 27.8 4.2 58 194-262 28-86 (149)
136 1v4r_A Transcriptional repress 21.7 29 0.00099 27.7 1.1 54 51-105 13-67 (102)
137 1ntc_A Protein (nitrogen regul 21.6 60 0.002 25.7 3.0 26 256-281 50-75 (91)
138 1kkx_A Transcription regulator 21.5 36 0.0012 29.1 1.7 45 261-306 52-106 (123)
139 2k02_A Ferrous iron transport 21.0 1.4E+02 0.0047 24.0 5.0 41 62-104 7-47 (87)
140 2kd1_A DNA integration/recombi 20.7 1E+02 0.0035 24.0 4.2 48 61-108 38-98 (118)
141 1ngr_A P75 low affinity neurot 20.4 30 0.001 27.6 0.9 22 256-282 12-33 (85)
142 2cor_A Pinch protein; LIM doma 20.3 47 0.0016 25.4 2.0 32 193-226 39-70 (79)
143 2iqj_A Stromal membrane-associ 20.1 52 0.0018 28.6 2.4 56 195-262 27-83 (134)
144 1xn7_A Hypothetical protein YH 20.1 1.4E+02 0.0049 23.2 4.8 41 61-103 6-46 (78)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=3.5e-42 Score=293.92 Aligned_cols=92 Identities=38% Similarity=0.768 Sum_probs=84.7
Q ss_pred ecCCCCCCCCCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHh
Q 012858 18 TIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLL 97 (455)
Q Consensus 18 vIPsy~~WF~~~~Ih~iEk~~lpefF~g~~~~ktpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FL 97 (455)
.-|+|++||+|++||+|||++|||||+|++++|||++||+|||+||++||+||.+|||+|+||++|+|||++|+|||+||
T Consensus 12 ~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~FL 91 (104)
T 2fq3_A 12 MASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFL 91 (104)
T ss_dssp -----CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCC
Q 012858 98 DEWGLINFGAVS 109 (455)
Q Consensus 98 e~wGlINy~~~~ 109 (455)
|+|||||||+++
T Consensus 92 e~wGLIN~~v~~ 103 (104)
T 2fq3_A 92 TKWGLINYQVDS 103 (104)
T ss_dssp HHTTSSSSCC--
T ss_pred HHcCeeccCCCC
Confidence 999999999997
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3.3e-41 Score=291.60 Aligned_cols=95 Identities=29% Similarity=0.515 Sum_probs=92.5
Q ss_pred eeEecCCCCCCCCCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhc--cchHHHHHH
Q 012858 15 ELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VGDVSLLHK 92 (455)
Q Consensus 15 e~ivIPsy~~WF~~~~Ih~iEk~~lpefF~g~~~~ktpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l--~gDv~~i~R 92 (455)
++++||+|++||++++||+|||++|||||+|+ ++|||++||+|||+||++||+||.+|||+|+||++| +|||++|+|
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~R 89 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGR 89 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHH
Confidence 67999999999999999999999999999998 799999999999999999999999999999999999 699999999
Q ss_pred HHHHhhhhccccccCCCC
Q 012858 93 VFRLLDEWGLINFGAVSR 110 (455)
Q Consensus 93 vh~FLe~wGlINy~~~~~ 110 (455)
||+|||+|||||||+++.
T Consensus 90 Vh~FLe~wGLIN~~~~~~ 107 (111)
T 2dce_A 90 IHTYLELIGAINFGCEQA 107 (111)
T ss_dssp HHHHHHHHSSSSCSCTTS
T ss_pred HHHHHHHcCeeecCCChh
Confidence 999999999999999984
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.68 E-value=9.2e-17 Score=131.00 Aligned_cols=60 Identities=32% Similarity=0.634 Sum_probs=56.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHcCCCCCccCCCcccc
Q 012858 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHEM 308 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflqLPIeD~~L~~~~~~ 308 (455)
.....||++|+++||++|++||++|.+||++||+||+.||+.||+++||+|+|+....+.
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~~~ 75 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSG 75 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCCCC
Confidence 446789999999999999999999999999999999999999999999999999887643
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.42 E-value=1.9e-13 Score=104.84 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCC-CCCHHHHHHHHHcCCCC
Q 012858 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVP-TKSKLDCISKLIELPFG 298 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~Vg-tKT~~eC~~hflqLPIe 298 (455)
....||++|+.+||++|++|| ++|.+||++|+ +||+.||+.||.+++|.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 467899999999999999999 99999999999 99999999999987763
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=1.5e-12 Score=100.41 Aligned_cols=50 Identities=36% Similarity=0.627 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHcCCCC
Q 012858 249 THGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIELPFG 298 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eC~~hflqLPIe 298 (455)
.....||.+|+.+||++|++|| ++|.+||++|++||+.||+.||.++.+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4567899999999999999999 8999999999999999999999976553
No 6
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.21 E-value=1e-11 Score=99.78 Aligned_cols=62 Identities=26% Similarity=0.391 Sum_probs=50.8
Q ss_pred CCCceeccCCCCCCCCCCCCCHHHHHHHHHHHHHcC----CCHHHHHhHCCCCCHHHHHHHHHcCCCCCc
Q 012858 235 KDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIELPFGEF 300 (455)
Q Consensus 235 s~dF~~i~~~~~~~~~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~VgtKT~~eC~~hflqLPIeD~ 300 (455)
..++.+.+... .....||.+|+.+|+++|.+|| ++|.+||++|++||..||+.||..| ++|+
T Consensus 5 ~~~~~~~~~~~---~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~ 70 (73)
T 2cqr_A 5 SSGSLRKERAR---SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGP 70 (73)
T ss_dssp SSSCCCCCTTT---CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSC
T ss_pred ccccccccccc---cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHcc
Confidence 34555555433 4577899999999999999999 6899999999999999999999865 4443
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.12 E-value=8.2e-11 Score=87.79 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 251 GATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
...||.+|+.+|+++|++|| .+|..||+++++||..||..||..
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHH
Confidence 57899999999999999999 589999999999999999999985
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.11 E-value=6.8e-11 Score=88.14 Aligned_cols=44 Identities=23% Similarity=0.599 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHhHCCCCCHHHHHHHHHc
Q 012858 251 GATWTEAETLLLLESVMRHGD-NWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~-nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
...||.+|+.+|+++|++||. +|..||+++++||..||..||..
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 568999999999999999995 99999999999999999999975
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=1.5e-10 Score=88.88 Aligned_cols=46 Identities=22% Similarity=0.552 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 249 THGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
.....||.+|+.+|+++|++|| .+|..||+++++||..||..||..
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLR 52 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 4467899999999999999999 699999999999999999999984
No 10
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.07 E-value=1.7e-10 Score=91.93 Aligned_cols=46 Identities=17% Similarity=0.356 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
.....||.+|+.+||++|++||.+|..||++|++||..||..||..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~ 52 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQ 52 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999874
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.07 E-value=1.5e-10 Score=86.79 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCC--CCCHHHHHHHHHc
Q 012858 251 GATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 294 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~Vg--tKT~~eC~~hflq 294 (455)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..||..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 48 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 46899999999999999999 79999999999 9999999999975
No 12
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.5e-11 Score=94.10 Aligned_cols=46 Identities=15% Similarity=0.332 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC------CCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 249 THGATWTEAETLLLLESVMRHG------DNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g------~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
.....||.+|+.+|+++|++|| .+|..||++|++||..||+.||..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~ 57 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQK 57 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHH
Confidence 3467899999999999999999 799999999999999999999963
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.6e-10 Score=89.38 Aligned_cols=46 Identities=28% Similarity=0.588 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 249 THGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
.....||.+|+.+|+++|++|| ++|..||++|++||..||..||.+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYE 53 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 3467899999999999999999 899999999999999999999985
No 14
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.03 E-value=2.5e-10 Score=91.56 Aligned_cols=46 Identities=26% Similarity=0.347 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHhHCCCCCHHHHHHHHHcC
Q 012858 250 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIEL 295 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~VgtKT~~eC~~hflqL 295 (455)
....||.+|+.+|.+||..|+ ++|++||++||+||++||+.||..|
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999998 5799999999999999999999976
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.99 E-value=4.7e-10 Score=87.75 Aligned_cols=45 Identities=20% Similarity=0.432 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCC--CCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~Vg--tKT~~eC~~hflq 294 (455)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~n 57 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 57 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHH
Confidence 357899999999999999999 79999999987 8999999999975
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.96 E-value=1e-09 Score=86.52 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCC--CCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~Vg--tKT~~eC~~hflq 294 (455)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..||..
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 56 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 467899999999999999999 79999999999 9999999999984
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.7e-09 Score=84.44 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
.....||.+|+.+|+++++.||.+|..||+.+ +||..||+.||..
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~ 51 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEF 51 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHH
Confidence 34678999999999999999999999999955 5999999999984
No 18
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=3.8e-09 Score=81.63 Aligned_cols=45 Identities=24% Similarity=0.439 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
....||++|..+|++++.+||.+|..||.+|++||..||+.+|..
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999963
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.84 E-value=2.4e-09 Score=89.76 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHhHCCCCCHHHHHHHHHcC
Q 012858 250 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIEL 295 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~VgtKT~~eC~~hflqL 295 (455)
....||.+|+.+|+++|.+|| +.|.+||++|++||.+||+.||..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999997 5799999999999999999999864
No 20
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.84 E-value=3.9e-09 Score=84.67 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHcC
Q 012858 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 295 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflqL 295 (455)
.....||.+|+.+|++++++||.+|..||+++ +||..||..||..|
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999 99999999999864
No 21
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.31 E-value=4.5e-10 Score=93.21 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
.....||.+|+.+|++++++||.+|..||++|++||..||..||..
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~ 59 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFN 59 (89)
Confidence 4567899999999999999999999999999999999999999974
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.74 E-value=1.2e-08 Score=86.28 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||.+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 48 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHh
Confidence 367899999999999999999 589999999999999999999986
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.74 E-value=1.1e-08 Score=87.17 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 252 ATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
..||.+|+.+|+++|++|| ++|..||++|++||..||..||.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence 5799999999999999999 599999999999999999999985
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.71 E-value=1.4e-08 Score=88.83 Aligned_cols=46 Identities=22% Similarity=0.556 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
.....||.+|+.+|+++|++||.+|..||+++++||..||..||.+
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh
Confidence 3467899999999999999999999999999999999999999985
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.69 E-value=1.6e-08 Score=85.38 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
....||.+|+.+|++++.+||.+|..||++|++||..+|..||..
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 99 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999975
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.69 E-value=1.7e-08 Score=85.88 Aligned_cols=45 Identities=16% Similarity=0.384 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 96 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMM 96 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999975
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.68 E-value=1.8e-08 Score=88.27 Aligned_cols=45 Identities=20% Similarity=0.558 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
....||.+|+.+|++++.+||.+|..||++|++||..+|..||..
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 105 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999974
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.66 E-value=3.4e-08 Score=86.41 Aligned_cols=46 Identities=20% Similarity=0.455 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 249 THGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
.....||.+|+.+|+++|++|| ++|..||+++++||..||..||..
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 3467899999999999999999 589999999999999999999985
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.63 E-value=4.6e-08 Score=85.61 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHcC
Q 012858 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 295 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflqL 295 (455)
....||.+|+.+|++++.+||.+|..||++|++||..+|..||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999754
No 30
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.62 E-value=3.6e-08 Score=80.96 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHhH----CCCCCHHHHHHHHHc
Q 012858 252 ATWTEAETLLLLESVMRHG-DNWELVAQN----VPTKSKLDCISKLIE 294 (455)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~----VgtKT~~eC~~hflq 294 (455)
..||.+|+..|+++|++|| |+|.+|+++ +.+||..+|..||..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrn 48 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT 48 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHH
Confidence 3699999999999999999 699999996 789999999999975
No 31
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.62 E-value=3.1e-08 Score=94.66 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
....||++|..++++|+.+||.||..||++||+||..||+.||..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 176 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999983
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.62 E-value=2.3e-08 Score=88.02 Aligned_cols=44 Identities=30% Similarity=0.538 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 251 GATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
.+.||.+|+.+|+++|++|| ++|..||++|++||..||..||.+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN 46 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh
Confidence 46799999999999999999 899999999999999999999985
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.59 E-value=5.4e-08 Score=85.63 Aligned_cols=45 Identities=16% Similarity=0.425 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
..+.||.+|+.+|++++..||.+|..||++|++||..+|..||..
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 97 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999975
No 34
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.57 E-value=1.1e-07 Score=105.77 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=76.0
Q ss_pred eEecCCCCCCCCC------------CCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhc
Q 012858 16 LYTIPSHSSWFRW------------DDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL 83 (455)
Q Consensus 16 ~ivIPsy~~WF~~------------~~Ih~iEk~~lpefF~g~~~~ktpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l 83 (455)
...+..|-.+|-. +.|+..|+..||||.. .+.+||.|||.|+.+|+.||...||...|++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~------~~~~yl~irn~il~~w~~np~~~l~~~~~~~~~ 289 (776)
T 4gut_A 216 VPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSR------DPTMYLALRNLILALWYTNCKEALTPQKCIPHI 289 (776)
T ss_dssp --CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSS------CCHHHHHHHHHHHHHHHHCTTSCCCHHHHGGGC
T ss_pred ccccccccccccCCCccccchhcCCCcCChHHHHhChHHHh------cCceeeeehHHHHHHHHHCCceeeeHHHhhhhc
Confidence 4457778889966 9999999999999964 457999999999999999999999999998876
Q ss_pred c-------chHHHHHHHHHHhhhhccccccCCC
Q 012858 84 V-------GDVSLLHKVFRLLDEWGLINFGAVS 109 (455)
Q Consensus 84 ~-------gDv~~i~Rvh~FLe~wGlINy~~~~ 109 (455)
. .++..+.+|+.||.++|+||++...
T Consensus 290 ~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (776)
T 4gut_A 290 IVRGLVRIRCVQEVERILYFMTRKGLINTGVLS 322 (776)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTCC
T ss_pred ccccccccccHHHHHHHHHHHHHhhhhhccccc
Confidence 3 3567789999999999999998864
No 35
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.6e-07 Score=73.03 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhH-CCCCCHHHHHHHHH
Q 012858 249 THGATWTEAETLLLLESVMRHGDNWELVAQN-VPTKSKLDCISKLI 293 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~-VgtKT~~eC~~hfl 293 (455)
.....||++|..++++||.+||.||..|+++ |++||..||+.+|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3467899999999999999999999999996 99999999999995
No 36
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.51 E-value=5.6e-08 Score=105.73 Aligned_cols=87 Identities=26% Similarity=0.478 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhh----ccchHHHHHHHHHHh
Q 012858 22 HSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKS----LVGDVSLLHKVFRLL 97 (455)
Q Consensus 22 y~~WF~~~~Ih~iEk~~lpefF~g~~~~ktpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~----l~gDv~~i~Rvh~FL 97 (455)
+++.|+.+.+|+.|+..|||+..+. ..+...||.|||.|+.+|+.||..+||..+|... +..|...|.+|++|+
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~~--~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~ 85 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 85 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGGCHHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcCc--hHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccCChHHHHHHHHHH
Confidence 4678999999999999999997652 1234689999999999999999999999999544 446889999999999
Q ss_pred hhhccccccCCCC
Q 012858 98 DEWGLINFGAVSR 110 (455)
Q Consensus 98 e~wGlINy~~~~~ 110 (455)
.++|+||+++...
T Consensus 86 ~~~~~~~~~~~~~ 98 (662)
T 2z3y_A 86 ERHGLINFGIYKR 98 (662)
T ss_dssp HHTTSSSCSSCBC
T ss_pred HHHHHHhcCCccc
Confidence 9999999887753
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.48 E-value=1.3e-07 Score=75.63 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHhHCCCCCHHHHHHHHHcCCCCCcc
Q 012858 250 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIELPFGEFM 301 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~VgtKT~~eC~~hflqLPIeD~~ 301 (455)
....||.+|+.+|..+|.+|+ +.|++||+++ +||.+||+.||..| .+|..
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L-~~d~~ 60 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL-KDSVT 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH-HHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHH-HHhcC
Confidence 356899999999999999997 5699999999 59999999999987 66643
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.42 E-value=2.9e-07 Score=83.25 Aligned_cols=46 Identities=20% Similarity=0.429 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHcC
Q 012858 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 295 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflqL 295 (455)
....||.+|+.+|++++.+||..|..||++|++||..+|..||..|
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999864
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.38 E-value=4.5e-07 Score=82.03 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
....||.+|+.+|+++|++|| .+|..||+++++||..||..||..
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 102 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence 367899999999999999999 589999999999999999999985
No 40
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.36 E-value=3.1e-07 Score=96.59 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
....||++|.+++|+||.+||.||..||++|||||..||+.||..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999973
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.35 E-value=3.6e-07 Score=78.13 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHC----CCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~V----gtKT~~eC~~hflq 294 (455)
....||.+|+..|++||++|| ++|.+|++.. .+||..+|..+|..
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrn 61 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKT 61 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 467899999999999999999 6999999977 68999999999975
No 42
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.34 E-value=3.9e-07 Score=79.79 Aligned_cols=45 Identities=27% Similarity=0.306 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHC----CCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~V----gtKT~~eC~~hflq 294 (455)
....||.+|+..|+++|++|| |+|.+|+++. .+||..+|..+|..
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrn 79 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKT 79 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 367899999999999999999 7999999985 68999999999975
No 43
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.30 E-value=8.8e-07 Score=70.30 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHhH-CCCCCHHHHHHHHH
Q 012858 251 GATWTEAETLLLLESVMRHGDNWELVAQN-VPTKSKLDCISKLI 293 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~-VgtKT~~eC~~hfl 293 (455)
...||++|..++++|+.+||.||..|+++ |++||..||+.+|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 46899999999999999999999999995 99999999999996
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.26 E-value=1.3e-07 Score=75.57 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHhHCCCCCHHHHHHHH
Q 012858 251 GATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKL 292 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~VgtKT~~eC~~hf 292 (455)
...||.+|..+|..||.+|+ +.|++||+.||+||++||+.||
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 56899999999999999998 4799999999999999999998
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.24 E-value=5.8e-07 Score=78.63 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHC----CCCCHHHHHHHHHc
Q 012858 249 THGATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIE 294 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~V----gtKT~~eC~~hflq 294 (455)
.....||.+|+..|+++|++|| ++|.+|+++. .+||..+|..+|..
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrn 65 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT 65 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHH
Confidence 3467899999999999999999 6999999995 68999999999974
No 46
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.21 E-value=1.8e-06 Score=72.34 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHH
Q 012858 251 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLI 293 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hfl 293 (455)
...||++|..++.+++.+||.+|..||++|++||..||+.+|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHh
Confidence 3579999999999999999999999999999999999999996
No 47
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.13 E-value=2.6e-06 Score=66.11 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHh---HCCCCCHHHHHHHHHcC
Q 012858 250 HGATWTEAETLLLLESVMRHGDNWELVAQ---NVPTKSKLDCISKLIEL 295 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~---~VgtKT~~eC~~hflqL 295 (455)
....||.+|+..|++||++||.+|.+|+. ++..||.-....+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 46789999999999999999999999994 66789999999998753
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.85 E-value=9.7e-06 Score=78.18 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC------HHHHHhHCCCCCHHHHHHHHHc
Q 012858 250 HGATWTEAETLLLLESVMRHGDN------WELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~n------W~~Ia~~VgtKT~~eC~~hflq 294 (455)
....||.+|+.+||+++++||.. |..||+++++||..+|+.||..
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~ 57 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV 57 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 45789999999999999999853 9999999999999999999974
No 49
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.69 E-value=2.8e-05 Score=87.36 Aligned_cols=87 Identities=26% Similarity=0.471 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHH----hhccchHHHHHHHHHHh
Q 012858 22 HSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVR----KSLVGDVSLLHKVFRLL 97 (455)
Q Consensus 22 y~~WF~~~~Ih~iEk~~lpefF~g~~~~ktpe~Y~~~RN~ii~~yr~np~~yLT~t~~r----~~l~gDv~~i~Rvh~FL 97 (455)
|.++++.+.+|..|+.+|+++-..- .....+|+.+||.|+..|+.||...++...|. |.+..|...|.+|++|+
T Consensus 179 ~~~r~p~~~~~~~e~~~f~~~~~~~--~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~~p~~i~~~~~~~ 256 (852)
T 2xag_A 179 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 256 (852)
T ss_dssp HTTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTSCHHHHHHHHHHH
T ss_pred HHhcCCCcccChHHHHHHHHHHHhh--hhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccCCcHHHHHHHHHH
Confidence 6689999999999999999986531 11356899999999999999999999987774 44457899999999999
Q ss_pred hhhccccccCCCC
Q 012858 98 DEWGLINFGAVSR 110 (455)
Q Consensus 98 e~wGlINy~~~~~ 110 (455)
.+|++||+++...
T Consensus 257 ~~~~~~~~~~~~~ 269 (852)
T 2xag_A 257 ERHGLINFGIYKR 269 (852)
T ss_dssp HHTTSSSCSSCBC
T ss_pred HHHHHHhcCcccc
Confidence 9999999888753
No 50
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=5.3e-05 Score=58.85 Aligned_cols=47 Identities=17% Similarity=0.516 Sum_probs=40.4
Q ss_pred ccCCCCCCC-CCCceeeecc-CCcccchhhhhcCCC-CCCCCCCCceecc
Q 012858 196 FKCGSCGEQ-CNSGCYEYSK-GSFVICEKCFKNGNY-GEDKSKDDFRFSD 242 (455)
Q Consensus 196 ~~C~~Cg~d-c~~~~y~c~k-~~~~LC~~CF~~G~~-~~~~ss~dF~~i~ 242 (455)
..|+.|+.. +...||+|+. .+++||..||..|.. ..|...|.|+++.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 789999986 8889999999 899999999999975 4566688888764
No 51
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.30 E-value=0.00012 Score=61.71 Aligned_cols=56 Identities=21% Similarity=0.646 Sum_probs=44.3
Q ss_pred cCCccCCCCCC-CCCCceeeecc-CCcccchhhhhcCCCCCCCCCCCceeccCCCCCCCCCCCCCHHH
Q 012858 193 LKGFKCGSCGE-QCNSGCYEYSK-GSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAE 258 (455)
Q Consensus 193 ~~~~~C~~Cg~-dc~~~~y~c~k-~~~~LC~~CF~~G~~~~~~ss~dF~~i~~~~~~~~~~~~WT~~E 258 (455)
...+.|+.|+. .+...||+|+. .+++||..||..|. | ..|.|.++... ...|+..|
T Consensus 29 H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~---H-~~H~f~~i~~~------~~~w~~~e 86 (98)
T 2dip_A 29 HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC---H-LSHTFTFREKR------NQKWRSLE 86 (98)
T ss_dssp CCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS---G-GGSCEEECCSS------SCCCEECC
T ss_pred cCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC---C-CCCCeeEecCC------CCCCcccc
Confidence 44588999997 57788999998 89999999999995 3 67999987653 23576544
No 52
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.21 E-value=0.00037 Score=56.85 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=43.6
Q ss_pred cCCccCCCCCC-CCCCceeeecc-CC---cccchhhhhcCCCC-CCCCCCCceeccCCC
Q 012858 193 LKGFKCGSCGE-QCNSGCYEYSK-GS---FVICEKCFKNGNYG-EDKSKDDFRFSDLGG 245 (455)
Q Consensus 193 ~~~~~C~~Cg~-dc~~~~y~c~k-~~---~~LC~~CF~~G~~~-~~~ss~dF~~i~~~~ 245 (455)
...+.|+.|+. .+...||+|+. .+ ++||..||..|... .|...|.|.++....
T Consensus 19 H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~ 77 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSS 77 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCC
T ss_pred eCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCC
Confidence 45678999997 57789999998 67 99999999999764 555789999887654
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.83 E-value=0.0015 Score=54.53 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHhHC-----CCCCHHHHHHHHHc
Q 012858 251 GATWTEAETLLLLESVMRHGDNWELVAQNV-----PTKSKLDCISKLIE 294 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~V-----gtKT~~eC~~hflq 294 (455)
...||.+|+..|++.+++|+-.|-.|++.. ++||-++...||..
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~ 78 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHH
Confidence 368999999999999999999999999998 47999999999975
No 54
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.56 E-value=0.002 Score=49.26 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHc--------C-CCHHHHHh-HCCCCCHHHHHHHHHc
Q 012858 251 GATWTEAETLLLLESVMRH--------G-DNWELVAQ-NVPTKSKLDCISKLIE 294 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~--------g-~nW~~Ia~-~VgtKT~~eC~~hflq 294 (455)
+..||.+|+..|++.|..| | .-|+++++ .+..+|-..|+.||++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 3579999999999999999 3 36999999 8999999999999985
No 55
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.55 E-value=0.0025 Score=52.83 Aligned_cols=44 Identities=18% Similarity=0.450 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHhHCCCCCHHHHHHHHHcC
Q 012858 252 ATWTEAETLLLLESVMRHG---DNWELVAQNVPTKSKLDCISKLIEL 295 (455)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g---~nW~~Ia~~VgtKT~~eC~~hflqL 295 (455)
--||.+|+..+|.+-++-| .-|..||+.+|+||++|...||.+|
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3699999999999999998 5999999999999999999999864
No 56
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=96.51 E-value=0.0011 Score=49.44 Aligned_cols=44 Identities=11% Similarity=0.390 Sum_probs=36.2
Q ss_pred CCccCCCCCCCCCCceeeecc-CCcccchhhhhcCCCCCCCCCCCceeccC
Q 012858 194 KGFKCGSCGEQCNSGCYEYSK-GSFVICEKCFKNGNYGEDKSKDDFRFSDL 243 (455)
Q Consensus 194 ~~~~C~~Cg~dc~~~~y~c~k-~~~~LC~~CF~~G~~~~~~ss~dF~~i~~ 243 (455)
..+.|+.|+.++ ..||+|+. .+|+||..||..|.- .|.+.++..
T Consensus 5 ~~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~H-----~H~m~~~~~ 49 (52)
T 1tot_A 5 FVYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKSH-----THKMVKWGL 49 (52)
T ss_dssp SCEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHCC-----CSSEEEECS
T ss_pred CEEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCCC-----CCceEEecC
Confidence 357899999995 68999999 899999999999862 477777653
No 57
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=96.43 E-value=0.0077 Score=51.52 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=61.0
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 012858 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (455)
Q Consensus 27 ~~~~Ih~iEk~~lpefF~g~~~~ktpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 104 (455)
+.+-+|+-|++..-.. .=.|..||.+.+.||.-...+. .|+.++||+.+.-|++-..||+.||.+.|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~kID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHTSCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHhcccHHHHHHHHHHHHHcCCCC
Confidence 4568899999988766 3479999999999999986543 39999999999999999999999999999985
No 58
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=96.37 E-value=0.0068 Score=50.12 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=61.2
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 012858 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (455)
Q Consensus 27 ~~~~Ih~iEk~~lpefF~g~~~~ktpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 104 (455)
+.+-+|+-|++..-.. .=.|..||.+...||.-...+. .++.++||..+.-|++-..||+.||.+.|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g--~l~k~da~~~~kiD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHS--CCCHHHHHTTSSSSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHcccHHHHHHHHHHHHHcCCCC
Confidence 5678899999988766 3479999999999999886544 38999999999999999999999999999996
No 59
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.31 E-value=0.0016 Score=52.80 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC----------CCHHHHHhHCC----CCCHHHHHHHHHc
Q 012858 251 GATWTEAETLLLLESVMRHG----------DNWELVAQNVP----TKSKLDCISKLIE 294 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g----------~nW~~Ia~~Vg----tKT~~eC~~hflq 294 (455)
...||.+|+++||++..... .-|+.||+.+. .||+.||..+|-.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~n 61 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRN 61 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 46799999999999996532 27999999875 6999999999975
No 60
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.014 Score=48.03 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=60.9
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccc
Q 012858 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLI 103 (455)
Q Consensus 27 ~~~~Ih~iEk~~lpefF~g~~~~ktpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 103 (455)
+.+-+|+-|++..-.. .=.|..|+.+.+.||.-+..+ ...++.++||+.+.-|++-..||++||.+.|+|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~kiD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELLNIDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 5678899999988766 347999999999999988764 356899999999999999999999999999987
No 61
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.64 E-value=0.0019 Score=50.82 Aligned_cols=43 Identities=16% Similarity=0.376 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC---CHHHHHhHCCCCCHHHHHHHHHcC
Q 012858 252 ATWTEAETLLLLESVMRHGD---NWELVAQNVPTKSKLDCISKLIEL 295 (455)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g~---nW~~Ia~~VgtKT~~eC~~hflqL 295 (455)
-.||.+|+..+|...++-|. -|..||+.+ +||++|...||.+|
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 46999999999999999994 999999999 79999999999875
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.62 E-value=0.002 Score=67.93 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 012858 251 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eC~~hflq 294 (455)
...||.+|..++.+++.+||.+|..|+++|++||..+|+.+|..
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp --------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhcc
Confidence 45899999999999999999999999999999999999999974
No 63
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.50 E-value=0.013 Score=58.56 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHH
Q 012858 252 ATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKL 292 (455)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eC~~hf 292 (455)
..||..+-..++.|.++|| ++|..||..|++||.+|...++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~ 152 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN 152 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4699999999999999999 8999999999999999996655
No 64
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.57 E-value=0.068 Score=44.51 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHhHCC-----CCCHHHHHHHHHc
Q 012858 251 GATWTEAETLLLLESVMRHGDNWELVAQNVP-----TKSKLDCISKLIE 294 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~Vg-----tKT~~eC~~hflq 294 (455)
...||.+|+..|++.+++|+-.|--|++.-. .||.++-..||.+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~ 78 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999998763 6999999999975
No 65
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.43 E-value=0.13 Score=47.83 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHhH
Q 012858 251 GATWTEAETLLLLESVMRHG-DNWELVAQN 279 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~ 279 (455)
...||.+|+..||-||.+|| |+|+.|-.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 56799999999999999999 999999764
No 66
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.32 E-value=0.22 Score=38.65 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---HHHHHhHCC--CCCHHHHHHHHH
Q 012858 251 GATWTEAETLLLLESVMRHGDN---WELVAQNVP--TKSKLDCISKLI 293 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~n---W~~Ia~~Vg--tKT~~eC~~hfl 293 (455)
.-.||.+....+++||++.|.+ |..|-+.++ +.|.+++..|.-
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 5679999999999999999954 899999988 569999998864
No 67
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.96 E-value=0.094 Score=51.50 Aligned_cols=31 Identities=26% Similarity=0.594 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhH
Q 012858 249 THGATWTEAETLLLLESVMRHG-DNWELVAQN 279 (455)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~ 279 (455)
.....|+.+|+..||-||.+|| |+|+.|..-
T Consensus 166 ~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 166 NWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 3457899999999999999999 999999753
No 68
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.80 E-value=0.33 Score=44.93 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CCHHHHHhHCC--CCCHHHHHHHH
Q 012858 251 GATWTEAETLLLLESVMRHG---DNWELVAQNVP--TKSKLDCISKL 292 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g---~nW~~Ia~~Vg--tKT~~eC~~hf 292 (455)
-..||..|...|+.++.+|| +.|+.|++... .||.++....+
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~ 53 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLG 53 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHH
Confidence 46799999999999999999 68999998754 79998877533
No 69
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=85.05 E-value=0.59 Score=46.59 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHh------------HCCCCCHHHHHHHHHcC
Q 012858 250 HGATWTEAETLLLLESVMRHG----DNWELVAQ------------NVPTKSKLDCISKLIEL 295 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~------------~VgtKT~~eC~~hflqL 295 (455)
.+..||.+|+..||-+|.+|| |+|+.|-. ++-+||+.|...|.-.|
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 467899999999999999999 69999973 45589999988887543
No 70
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=84.08 E-value=1.1 Score=45.82 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHhHCC-CCCHHHHHHHHH
Q 012858 252 ATWTEAETLLLLESVMRHG-DNWELVAQNVP-TKSKLDCISKLI 293 (455)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~Vg-tKT~~eC~~hfl 293 (455)
..||..+-..++.|.++|| ++-..||..|+ +||.+|.. .|.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~ 166 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYA 166 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHH
Confidence 4799999999999999999 89999999998 99999988 554
No 71
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=66.59 E-value=5 Score=30.93 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhc-----cchHHHHHHHHHHhhhhcccccc
Q 012858 58 YRDFMINKYREEPSRRLTFTQVRKSL-----VGDVSLLHKVFRLLDEWGLINFG 106 (455)
Q Consensus 58 ~RN~ii~~yr~np~~yLT~t~~r~~l-----~gDv~~i~Rvh~FLe~wGlINy~ 106 (455)
-|-.|++.....+...+|+.+.-..+ .-+...|.|....|+..|+|.-.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 45667776554332689999998888 34789999999999999999743
No 72
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=66.50 E-value=5.1 Score=40.93 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHhH------------CCCCCHHHHHHHHHcC
Q 012858 250 HGATWTEAETLLLLESVMRHG----DNWELVAQN------------VPTKSKLDCISKLIEL 295 (455)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~------------VgtKT~~eC~~hflqL 295 (455)
.+..||.+|+..||=+|.+|| ++|+.|-.. +.+||+.+...|.-.|
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tL 288 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTL 288 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 367899999999999999999 789999554 3489999988777543
No 73
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=63.56 E-value=8.6 Score=29.06 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 012858 52 PKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (455)
Q Consensus 52 pe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 104 (455)
|+.-.+.|..|++....++ .+++.++.-+.+.-.-..+.|+..=|+..|+|-
T Consensus 5 ~~~m~~~~~~IL~~L~~~~-~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDDG-GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp ----CHHHHHHHHHHHHHC-SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccHHHHHHHHHHHHcC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 4333347889999887643 679999999999888999999999999999985
No 74
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=59.90 E-value=11 Score=32.31 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhcc-----chHHHHHHHHHHhhhhccccc
Q 012858 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (455)
Q Consensus 58 ~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy 105 (455)
-|-.|++....++...+|+.+.-..|. -+...|.|...+|+..|||.-
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 477788877655437999999987772 378999999999999999973
No 75
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=56.55 E-value=15 Score=31.09 Aligned_cols=54 Identities=7% Similarity=0.021 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhCCCceeeHHHHHhhc-----cchHHHHHHHHHHhhhhccccccCC
Q 012858 54 IYKEYRDFMINKYREEPSRRLTFTQVRKSL-----VGDVSLLHKVFRLLDEWGLINFGAV 108 (455)
Q Consensus 54 ~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l-----~gDv~~i~Rvh~FLe~wGlINy~~~ 108 (455)
+.-.-|-.|++..... ...+|+.+.-..| .-+...+.|...+|+..|||.=-..
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 4456788899887754 5799999998777 2378999999999999999974433
No 76
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=51.63 E-value=12 Score=32.54 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhcc-----chHHHHHHHHHHhhhhccccc
Q 012858 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (455)
Q Consensus 58 ~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy 105 (455)
-|-.|++....++...+|+.+.-..|. -+...|.|...+|+..|||.-
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 467788866644327899999987772 378899999999999999973
No 77
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.59 E-value=18 Score=31.44 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhCCCceeeHHHHHhhcc-----chHHHHHHHHHHhhhhcccccc
Q 012858 55 YKEYRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINFG 106 (455)
Q Consensus 55 Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy~ 106 (455)
.-.-|-.|++....++ ..+|+.+.-..|. -+...|.|...+|+..|||.=-
T Consensus 25 ~T~qR~~IL~~l~~~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 25 NSKQREEVVSVLYRSG-THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp CHHHHHHHHHHHHHCS-SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE
Confidence 3446778888877664 6999999987772 3788999999999999999743
No 78
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=51.38 E-value=18 Score=27.79 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 012858 59 RDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (455)
Q Consensus 59 RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 106 (455)
|..|+.....++ .+|..+..+.+.-....+.|...-|+..|+|-..
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 677887766653 4899999998877889999999999999999754
No 79
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=49.21 E-value=24 Score=34.03 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=21.1
Q ss_pred CHHHHHhHCCCCCHHHHHHHHH
Q 012858 272 NWELVAQNVPTKSKLDCISKLI 293 (455)
Q Consensus 272 nW~~Ia~~VgtKT~~eC~~hfl 293 (455)
-|..||++..++|...-+.+|.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyr 194 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFR 194 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHH
Confidence 6999999999999999999997
No 80
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.01 E-value=23 Score=30.47 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhcc-----chHHHHHHHHHHhhhhcccccc
Q 012858 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINFG 106 (455)
Q Consensus 58 ~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy~ 106 (455)
-|-.|++..... ...+|+.+.-..|. -+...|.|...+|...|||.--
T Consensus 23 qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 23 QRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEE
Confidence 467788877654 56899999987773 3788999999999999999743
No 81
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=46.11 E-value=25 Score=30.16 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhCCCceeeHHHHHhhcc-----chHHHHHHHHHHhhhhccccc
Q 012858 54 IYKEYRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (455)
Q Consensus 54 ~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy 105 (455)
+.-.-|-.|++....++ ..+|+.+....|. -+...|.|...+|..-|||.=
T Consensus 11 r~T~qR~~Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 11 RATRQRAAVSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHHHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred ccCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45567889999776554 6999999987773 378999999999999999973
No 82
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=43.76 E-value=35 Score=33.25 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CCHHHHHhHCC--CCCHHHHHHHH
Q 012858 251 GATWTEAETLLLLESVMRHG---DNWELVAQNVP--TKSKLDCISKL 292 (455)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g---~nW~~Ia~~Vg--tKT~~eC~~hf 292 (455)
...||+.|...|+.++.+|| +.|+.|++--. .|+.+....-|
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~ 49 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETY 49 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 46799999999999999999 58999986533 57776554444
No 83
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=42.85 E-value=18 Score=26.73 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHhHCCC
Q 012858 256 EAETLLLLESVMRHGDNWELVAQNVPT 282 (455)
Q Consensus 256 ~~E~~~LLe~Ie~~g~nW~~Ia~~Vgt 282 (455)
.-|...+.++++.+++|+.+.|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 457778999999999999999999994
No 84
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.39 E-value=24 Score=30.45 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhcc-----chHHHHHHHHHHhhhhccccc
Q 012858 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (455)
Q Consensus 58 ~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy 105 (455)
-|..|++....++ .+|+.+.-..|. -+...|.|...+|..-|||.=
T Consensus 20 qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 20 QRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 4667777666654 899999876662 378899999999999999973
No 85
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=39.92 E-value=16 Score=28.46 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=23.5
Q ss_pred CccCCCCCCCCCCceeeeccCCcccchhhhhcC
Q 012858 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNG 227 (455)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~c~k~~~~LC~~CF~~G 227 (455)
...|++||+.-..+.---..++..||..|....
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c 50 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC 50 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHHHHHH
Confidence 357999999876654333335677999998655
No 86
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=39.75 E-value=50 Score=27.46 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 012858 60 DFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (455)
Q Consensus 60 N~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 108 (455)
-.|+..-..++..++|+.+..+.+.-+...+.|...-|+..|+|--...
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 3445444446654599999999998899999999999999999986544
No 87
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=39.34 E-value=54 Score=27.61 Aligned_cols=58 Identities=10% Similarity=0.188 Sum_probs=43.7
Q ss_pred CCCh---hHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhccccccC
Q 012858 49 SRTP---KIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (455)
Q Consensus 49 ~ktp---e~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 107 (455)
++.| ++|-.||+.|++ =+..|...| +..+....+.--...+.+.+.-|+.-|||-...
T Consensus 11 s~~PlY~QI~~~i~~~I~~-G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVK-GVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHH-TSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHHHHHHHHc-CCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 4555 456666666665 234799999 888877777667889999999999999997443
No 88
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=38.28 E-value=21 Score=26.27 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=22.0
Q ss_pred ccCCCCCCCCCCceeeeccCCcccchhhhhc
Q 012858 196 FKCGSCGEQCNSGCYEYSKGSFVICEKCFKN 226 (455)
Q Consensus 196 ~~C~~Cg~dc~~~~y~c~k~~~~LC~~CF~~ 226 (455)
..|++||+.-..+.---..++..+|..|...
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHHHHH
Confidence 5799999987665433333567799999754
No 89
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=37.75 E-value=47 Score=27.12 Aligned_cols=42 Identities=2% Similarity=0.038 Sum_probs=33.4
Q ss_pred HHHHhCCCceeeHHHHHhhccch----HHHHHHHHHHhhhhccccccCC
Q 012858 64 NKYREEPSRRLTFTQVRKSLVGD----VSLLHKVFRLLDEWGLINFGAV 108 (455)
Q Consensus 64 ~~yr~np~~yLT~t~~r~~l~gD----v~~i~Rvh~FLe~wGlINy~~~ 108 (455)
-.|... .+|+.+..+.|..| ...|.|+...|+..|||--..+
T Consensus 43 ~L~~~~---~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 43 VIWSLG---EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp HHHHHS---CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHhCC---CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeC
Confidence 346533 58999999998754 6899999999999999975433
No 90
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=37.40 E-value=22 Score=28.63 Aligned_cols=38 Identities=18% Similarity=0.468 Sum_probs=24.9
Q ss_pred CCCCCCC--ceeeecc----CCcccchhhhhcCCCCCCCCCCCceecc
Q 012858 201 CGEQCNS--GCYEYSK----GSFVICEKCFKNGNYGEDKSKDDFRFSD 242 (455)
Q Consensus 201 Cg~dc~~--~~y~c~k----~~~~LC~~CF~~G~~~~~~ss~dF~~i~ 242 (455)
|+..... ..|+|.. ....||..||..+. +..|+|.+..
T Consensus 11 Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~----H~gH~~~~~~ 54 (82)
T 3nis_A 11 CGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKD----HVNHHVCTDI 54 (82)
T ss_dssp CCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGG----GTTSCEEEEE
T ss_pred CCCcccCCCEEEEeeccCCCCCceEchhhCCCCC----cCCceEEEEE
Confidence 5555443 3566655 55679999998875 3457777654
No 91
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=37.39 E-value=20 Score=28.96 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=28.0
Q ss_pred CccCCCCCCCCCCceeeeccCCcccchhhhhc
Q 012858 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKN 226 (455)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~c~k~~~~LC~~CF~~ 226 (455)
.+.|+.|+.......|+|..-+|.|-..|...
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHC
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCC
Confidence 57899999998878999998889999999854
No 92
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=36.55 E-value=48 Score=27.19 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 012858 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (455)
Q Consensus 52 pe~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 106 (455)
-++|-.+|+.|++- +..|...| +..+..+.+.---..+.+.+.-|+..|||-..
T Consensus 12 ~~i~~~i~~~I~~g-~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 12 QQLRDKIVEAIIDG-SYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 35666777766652 23688899 88888888866688999999999999999643
No 93
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.01 E-value=38 Score=29.91 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhcc-------chHHHHHHHHHHhhhhccccc
Q 012858 58 YRDFMINKYREEPSRRLTFTQVRKSLV-------GDVSLLHKVFRLLDEWGLINF 105 (455)
Q Consensus 58 ~RN~ii~~yr~np~~yLT~t~~r~~l~-------gDv~~i~Rvh~FLe~wGlINy 105 (455)
-|-.|++....++ ..+|+.+.-..|. -+...|.|...+|..-|||.=
T Consensus 34 qR~~IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 34 QREVLLKTLYHSD-THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHSCC-SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4777888766554 8999999866653 257899999999999999973
No 94
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=34.90 E-value=60 Score=25.11 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhCC-CceeeHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 012858 54 IYKEYRDFMINKYREEP-SRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (455)
Q Consensus 54 ~Y~~~RN~ii~~yr~np-~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 106 (455)
+.-+....|+..-+.|+ ..++|+.+..+.|.-+-..|.|...=|++-|+|-..
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 33445677888888887 779999999999987888999999999999999654
No 95
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=32.77 E-value=72 Score=24.57 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=32.9
Q ss_pred ceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCC
Q 012858 72 RRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (455)
Q Consensus 72 ~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~ 109 (455)
..+|+++..+.+.-+...+.|+..-|+..|+|-....+
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 45999999998887999999999999999999876554
No 96
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=32.01 E-value=75 Score=26.62 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhccccc
Q 012858 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105 (455)
Q Consensus 52 pe~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy 105 (455)
-.+|-.+|+.|+.- ...|...| +..+..+.+.---..+.+.+.-|+..|||-.
T Consensus 14 ~~i~~~l~~~I~~g-~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 14 LQLVDRIKNEVATD-VLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHHHHTT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35677777777653 23688999 9999888887678889999999999999953
No 97
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=31.90 E-value=28 Score=27.45 Aligned_cols=38 Identities=21% Similarity=0.580 Sum_probs=24.1
Q ss_pred CCCCCCC--ceeeecc----CCcccchhhhhcCCCCCCCCCCCceecc
Q 012858 201 CGEQCNS--GCYEYSK----GSFVICEKCFKNGNYGEDKSKDDFRFSD 242 (455)
Q Consensus 201 Cg~dc~~--~~y~c~k----~~~~LC~~CF~~G~~~~~~ss~dF~~i~ 242 (455)
|+..... ..|+|.. ....||.+||.++. +..|+|.+..
T Consensus 7 Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~----H~gH~~~~~~ 50 (75)
T 3ny3_A 7 CGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSI----HRDHRYRMTT 50 (75)
T ss_dssp CCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSG----GGGSCEEEEE
T ss_pred cCCcccCCCEEEECccCCCCCCeeEChHHCCCCC----cCCceEEEEE
Confidence 4444432 3556654 45679999999886 2457777654
No 98
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.61 E-value=34 Score=30.10 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=47.4
Q ss_pred CccCCCCCCCCCCceeeeccCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CC
Q 012858 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHG-DN 272 (455)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~c~k~~~~LC~~CF~~G~-~~~~~ss~dF~~i~~~~~~~~~~~~WT~~E~~~LLe~Ie~~g-~n 272 (455)
-..|.-|+.. .+.+-+..-++.+|.+|-.--+ ++.|.+ ++... .-..||.+|...|.. .| ..
T Consensus 29 N~~CaDCga~--~P~WaS~n~GvfiC~~CsgiHR~LG~hiS-----~VkSl-----~ld~w~~~~l~~m~~----~GN~~ 92 (141)
T 2crr_A 29 NKYCADCEAK--GPRWASWNIGVFICIRCAGIHRNLGVHIS-----RVKSV-----NLDQWTAEQIQCMQD----MGNTK 92 (141)
T ss_dssp GSSCSSSCCS--SCCSEETTTTEECCHHHHHHHHHHCTTTC-----CCBCS-----SSSCCCHHHHHHHHH----THHHH
T ss_pred CCcCCCCCCC--CCCeEEeccCeEEhhhhhHhHhcCCCCCC-----eeeEC-----CCCCCCHHHHHHHHH----HccHH
Confidence 3568888765 4566677778899999987553 454432 22221 124699987665543 23 12
Q ss_pred HHHHHh-HCC----CCCHHHHHHHHHc
Q 012858 273 WELVAQ-NVP----TKSKLDCISKLIE 294 (455)
Q Consensus 273 W~~Ia~-~Vg----tKT~~eC~~hflq 294 (455)
.+.+=+ ++. .-+..+-++.||+
T Consensus 93 an~~~e~~lp~~~~~P~~~~~~e~fIr 119 (141)
T 2crr_A 93 ARLLYEANLPENFRRPQTDQAVEFFIR 119 (141)
T ss_dssp HHHHGGGSCCTTCCCCCSHHHHHHHHH
T ss_pred HHHHHHhcCCcccCCCCchHHHHHHHH
Confidence 223221 222 1244566778876
No 99
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=30.34 E-value=50 Score=27.98 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 012858 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (455)
Q Consensus 52 pe~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 106 (455)
-.+|-.+|+.|+.- +..|...| +..+..+.+.---..+.+.+.-|+..|||-..
T Consensus 7 ~~i~~~i~~~I~~g-~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 7 KQIASLIEDSIVDG-TLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHHHHHHHHHTT-SSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 46788888888763 44688999 89888888866788899999999999999643
No 100
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=29.67 E-value=86 Score=24.79 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 012858 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (455)
Q Consensus 58 ~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 108 (455)
.|-.|+...... .+|+++..+.+.-.-..+.|...-|+..|||.....
T Consensus 22 ~r~~IL~~L~~~---~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 22 TRWEILTELGRA---DQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHHHHS---CBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 466677765332 389999999997789999999999999999986543
No 101
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=29.36 E-value=89 Score=25.65 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=41.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccC
Q 012858 51 TPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (455)
Q Consensus 51 tpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 107 (455)
|+..|..++ .|+...+ ....+|+++..+.+.-+..++.|+..-|+..|||....
T Consensus 12 t~~~~~~L~-~l~~l~~--~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 12 SRREFSYLL-TIKRYND--SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp CHHHHHHHH-HHHHHHT--TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHH-HHHHHHh--cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 555555555 3444333 34679999999999889999999999999999998643
No 102
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=29.25 E-value=57 Score=27.44 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=34.7
Q ss_pred CCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCC
Q 012858 69 EPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (455)
Q Consensus 69 np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~ 109 (455)
.+..++|..+..+.+.-+...+.|+...|++-|+|--..+.
T Consensus 47 ~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~ 87 (128)
T 2vn2_A 47 EGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHT 87 (128)
T ss_dssp TTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC--
T ss_pred cCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEE
Confidence 35566899999999988999999999999999999877665
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.92 E-value=16 Score=30.77 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=33.8
Q ss_pred HHHHHHHHcCC--------CHHHHHhHCCCCCHHHHHHHHHc--CCCCCccCCCc
Q 012858 261 LLLESVMRHGD--------NWELVAQNVPTKSKLDCISKLIE--LPFGEFMMGSA 305 (455)
Q Consensus 261 ~LLe~Ie~~g~--------nW~~Ia~~VgtKT~~eC~~hflq--LPIeD~~L~~~ 305 (455)
+|-..|...|| .|..||+.+|-........+|.+ +|.|. |+...
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~-~~~~~ 106 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER-HMISQ 106 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHHH-HHHHT
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHHH-HHhCc
Confidence 68888888884 89999999996666777888876 67776 55443
No 104
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=28.48 E-value=79 Score=24.89 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCC-CceeeHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 012858 59 RDFMINKYREEP-SRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (455)
Q Consensus 59 RN~ii~~yr~np-~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 106 (455)
...|++..+.|+ ..++|+.+..+.|.-.-..|.|...=|++-|+|-..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 344555555554 889999999999987778999999999999999764
No 105
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.94 E-value=91 Score=24.19 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCccCCCCCCCCCCceeeecc-CCcccchhhhhcCCCCCCCCCCCceec
Q 012858 194 KGFKCGSCGEQCNSGCYEYSK-GSFVICEKCFKNGNYGEDKSKDDFRFS 241 (455)
Q Consensus 194 ~~~~C~~Cg~dc~~~~y~c~k-~~~~LC~~CF~~G~~~~~~ss~dF~~i 241 (455)
..+-|..|..+ .-++|.. .+-.-|..||.+++.......|..++.
T Consensus 7 e~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 7 GLPWCCICNED---ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp CCSSCTTTCSC---CCEEETTTTSEEECSSHHHHHTTTSSTTTCCEECC
T ss_pred CCCeeEEeCCC---CeEEecCCCCceehHHHHHHHccchhhhccceeec
Confidence 34679999888 3478887 455679999999985544444544443
No 106
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=27.92 E-value=80 Score=25.65 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=38.1
Q ss_pred HhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCCC
Q 012858 67 REEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSR 110 (455)
Q Consensus 67 r~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~~ 110 (455)
..+|...+|+++..+.+.-+-..+.|+..=|+..|||--..++.
T Consensus 41 ~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~ 84 (139)
T 3eco_A 41 YAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQ 84 (139)
T ss_dssp HHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC
T ss_pred HhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCC
Confidence 34666789999999999889999999999999999999776653
No 107
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=27.89 E-value=41 Score=29.51 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=36.1
Q ss_pred CccCCCCCCCCCCceeeeccCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 012858 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (455)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~c~k~~~~LC~~CF~~G~-~~~~~ss~dF~~i~~~~~~~~~~~~WT~~E~~~L 262 (455)
-..|.-|+.. .+.+-+..-++.+|.+|-.--+ +|.|.+ +++ .. .-..||.+|...|
T Consensus 36 N~~CaDCga~--~P~WaS~n~GvfiC~~CsgiHR~LG~hiS---~Vr--Sl-----~lD~w~~~~l~~m 92 (138)
T 2owa_A 36 NRTCFDCESR--NPTWLSLSFAVFICLNCSSDHRKMGVHIS---FVR--SS-----DLDKFTPIQLVRM 92 (138)
T ss_dssp GGBCTTTCCB--SCCEEETTTTEEECHHHHHHHHTTCTTTC---CEE--ET-----TTSCCCHHHHHHH
T ss_pred CCcCCCCcCC--CCCeEEecCCEEEhHhhhHHHhCCCCCCC---eee--ec-----CcCcCCHHHHHHH
Confidence 4578888865 4566677788999999997553 455442 333 21 1236999876544
No 108
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=27.79 E-value=92 Score=25.78 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=40.6
Q ss_pred ChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccc
Q 012858 51 TPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLI 103 (455)
Q Consensus 51 tpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 103 (455)
.++.|-++++.|.+....+ ..+|+.+.|..+.-=--...=|.+||++.|+.
T Consensus 60 ~~~~~~~~~~~l~~~~~~~--~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 60 RNDRIVEFANMIRDLDQEC--GSTCAADFRDRLGVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EHHHHHHHHHHHHHHHHHH--SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHHHHHHHC--CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCe
Confidence 5799999999999988875 68999999999842223334688899999975
No 109
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.63 E-value=24 Score=22.79 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=16.5
Q ss_pred HhhccChHHHHHHHHHHHHHH
Q 012858 383 ISTMVGPHVTAAAAEAAVAAL 403 (455)
Q Consensus 383 Las~V~P~VAaAAA~aAl~~l 403 (455)
+++...|.||+|+|-+-|+-|
T Consensus 7 ~as~faPGvaAAqAL~eIERL 27 (29)
T 1xnl_A 7 FASILAPGVAAAQALREIERL 27 (29)
T ss_dssp TTTSSSTTTHHHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHh
Confidence 467788999998887777655
No 110
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=27.43 E-value=75 Score=27.83 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=36.4
Q ss_pred CccCCCCCCCCCCceeeeccCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHHH
Q 012858 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLL 263 (455)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~c~k~~~~LC~~CF~~G~-~~~~~ss~dF~~i~~~~~~~~~~~~WT~~E~~~LL 263 (455)
-..|.-|+.. .+.+-+..-++.+|.+|-.--+ +|.+ .+++- . .-..||.+|...|.
T Consensus 25 N~~CaDCg~~--~P~WaS~n~GvfiC~~CsgiHR~LG~~----s~VrS--l-----~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 25 NRKCFDCDQR--GPTYVNMTVGSFVCTSCSGSLRGLNPP----HRVKS--I-----SMTTFTQQEIEFLQ 81 (140)
T ss_dssp GGSCTTTCSS--CCCEEETTTTEEECHHHHHHHTTSSSC----CCEEE--T-----TTCCCCHHHHHHHH
T ss_pred CCcCCCCCCC--CCCceeeccCEEEchhccchhccCCCc----ceeee--c-----CCCCCCHHHHHHHH
Confidence 3568888864 4666677788999999997554 4442 24432 1 12469998776554
No 111
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=27.04 E-value=77 Score=25.67 Aligned_cols=41 Identities=5% Similarity=0.011 Sum_probs=35.9
Q ss_pred CCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCC
Q 012858 69 EPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (455)
Q Consensus 69 np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~ 109 (455)
++...+|+++..+.+.-+...+.|+..=|+..|||--..++
T Consensus 46 ~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 86 (141)
T 3bro_A 46 NKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSG 86 (141)
T ss_dssp TTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCC
Confidence 55557999999999988999999999999999999876665
No 112
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=26.71 E-value=49 Score=26.94 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=42.9
Q ss_pred hHHHHH--HHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhccccccC
Q 012858 53 KIYKEY--RDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (455)
Q Consensus 53 e~Y~~~--RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 107 (455)
.+|.++ |+.|+..| .|...| +..+..+.+.--...+.+.+.-|+.-|||-...
T Consensus 22 ~~y~~l~i~~~I~~~l--~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 22 LSYSELEAIEHIFEEL--DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp SCHHHHHHHHHHTTSS--BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHhhh--cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 578888 99999443 567777 999988888666788999999999999997544
No 113
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=26.50 E-value=73 Score=25.57 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=32.2
Q ss_pred CCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 012858 70 PSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (455)
Q Consensus 70 p~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 104 (455)
...-++..+.++.+.-+...+.||..-||..|||-
T Consensus 33 g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 33 GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 44679999999999999999999999999999996
No 114
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=26.25 E-value=41 Score=26.32 Aligned_cols=22 Identities=14% Similarity=0.364 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhccccccCC
Q 012858 87 VSLLHKVFRLLDEWGLINFGAV 108 (455)
Q Consensus 87 v~~i~Rvh~FLe~wGlINy~~~ 108 (455)
...+..++.|.-.||+|...+.
T Consensus 76 ~~~l~~~~~~A~~~~~i~~NP~ 97 (116)
T 2kj5_A 76 LRWLKRMFNYAIKRHIIEYNPA 97 (116)
T ss_dssp HHHHHHHHHHHHHTTSCSSCGG
T ss_pred HHHHHHHHHHHHHcCccccCch
Confidence 4567788899999999975443
No 115
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=25.70 E-value=1.3e+02 Score=24.46 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=36.9
Q ss_pred CCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCCC
Q 012858 69 EPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSR 110 (455)
Q Consensus 69 np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~~ 110 (455)
++...+|.++..+.+.-+-.++.|+..=|+..|||-...++.
T Consensus 49 ~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~ 90 (127)
T 2frh_A 49 NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEH 90 (127)
T ss_dssp TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSS
T ss_pred ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 444679999999999889999999999999999999877763
No 116
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=25.56 E-value=1.1e+02 Score=23.44 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 012858 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (455)
Q Consensus 58 ~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 108 (455)
.|-.|+..-.. ...+|+++..+.+.-+-..+.|...-|+..|+|....+
T Consensus 25 ~~~~il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 25 KRLLILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 45567764443 34699999999997789999999999999999987654
No 117
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=24.98 E-value=72 Score=26.61 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 012858 53 KIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (455)
Q Consensus 53 e~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 106 (455)
++|-.||+.|++ -...|...| |..+..+.+.--...+.+.+.-|+.-|+|--.
T Consensus 17 ~i~~~i~~~I~~-g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 17 QISDWMKKQMIT-GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp HHHHHHHHHHHT-TSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHh-CCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 566666666665 233688889 58888888866688999999999999999643
No 118
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=24.90 E-value=81 Score=24.57 Aligned_cols=35 Identities=6% Similarity=0.102 Sum_probs=31.7
Q ss_pred CCCceeeHHHHHhhccchHHHHHHHHHHhhhhccc
Q 012858 69 EPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLI 103 (455)
Q Consensus 69 np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 103 (455)
.+...+|.++..+.+.-+-.++.|+..=|+..|||
T Consensus 26 ~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 26 LGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp HTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 34556999999999988999999999999999999
No 119
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=24.64 E-value=73 Score=26.20 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=31.9
Q ss_pred hCCCceeeHHHHHh-hccchHHHHHHHHHHhhhhcccc
Q 012858 68 EEPSRRLTFTQVRK-SLVGDVSLLHKVFRLLDEWGLIN 104 (455)
Q Consensus 68 ~np~~yLT~t~~r~-~l~gDv~~i~Rvh~FLe~wGlIN 104 (455)
.+| +.|.++... .+.-|-..+.|=...|++-|||=
T Consensus 27 ~~~--~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 27 KKD--FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HST--TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HCC--CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 366 999999999 77789999999999999999997
No 120
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=24.40 E-value=1e+02 Score=24.36 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhcc-----c-------hHHHHHHHHHHhhhhccccc
Q 012858 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----G-------DVSLLHKVFRLLDEWGLINF 105 (455)
Q Consensus 58 ~RN~ii~~yr~np~~yLT~t~~r~~l~-----g-------Dv~~i~Rvh~FLe~wGlINy 105 (455)
++++|+..+-.-|-..||..+++..+. | -...|..++.|.-.+|+|..
T Consensus 34 l~~~i~~~lg~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~Av~~~~i~~ 93 (118)
T 2kj8_A 34 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 93 (118)
T ss_dssp HHHHHHHHHTTSBTTSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHhhHHhcCCcHHHCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 344555555556778899988876653 1 13456677888888898863
No 121
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=24.33 E-value=1.2e+02 Score=23.74 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCceeeHHHHHhhccc-hHHHHHHHHHHhhhhcccc
Q 012858 56 KEYRDFMINKYREEPSRRLTFTQVRKSLVG-DVSLLHKVFRLLDEWGLIN 104 (455)
Q Consensus 56 ~~~RN~ii~~yr~np~~yLT~t~~r~~l~g-Dv~~i~Rvh~FLe~wGlIN 104 (455)
+-.++| |+.|...|...+++.++...|.. .--=|.-|..=||.-|||-
T Consensus 14 ~lt~kF-i~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~ 62 (76)
T 1cf7_A 14 LLTTKF-VSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIE 62 (76)
T ss_dssp HHHHHH-HHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEE
T ss_pred HHHHHH-HHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhccee
Confidence 334444 56788899999999999999987 6555666667789999986
No 122
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=24.12 E-value=67 Score=31.88 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=42.1
Q ss_pred CChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhc--cc--hHHHHHHHHHHhhhhccccccCCC
Q 012858 50 RTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VG--DVSLLHKVFRLLDEWGLINFGAVS 109 (455)
Q Consensus 50 ktpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l--~g--Dv~~i~Rvh~FLe~wGlINy~~~~ 109 (455)
+-|..|+.+|+.+.+. +. ...+||.+++++.. .| |-..+..+..||...|.|-|--+.
T Consensus 13 ~iP~sW~~l~~~L~~~-~~-~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~il~f~d~ 74 (332)
T 3dpt_A 13 PLAPSWIKVKEKLVEA-TT-AQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEAL 74 (332)
T ss_dssp ----CHHHHHHHHHHH-HH-HSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSSEECTTT
T ss_pred ccCHHHHHHHHHHHhh-hc-CCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEEEEecCC
Confidence 4689999999999885 43 35899999987654 23 333577888899999999887665
No 123
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=24.00 E-value=82 Score=26.50 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=37.6
Q ss_pred hCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCCC
Q 012858 68 EEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSR 110 (455)
Q Consensus 68 ~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~~ 110 (455)
..+...+|.++..+.+.-|-..+.|+..-|++.|||--..++.
T Consensus 46 ~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~ 88 (147)
T 4b8x_A 46 FSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPN 88 (147)
T ss_dssp TSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC-
T ss_pred HCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCC
Confidence 3566789999999999889999999999999999999877763
No 124
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=23.56 E-value=1.5e+02 Score=23.06 Aligned_cols=55 Identities=5% Similarity=0.056 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccC
Q 012858 53 KIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (455)
Q Consensus 53 e~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 107 (455)
.++.+|-++|-.....+-....|+.+....+.-=..++.|=...||+.|+|--..
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecC
Confidence 4566666776665444313468999998887544677999999999999997544
No 125
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.49 E-value=1.2e+02 Score=24.13 Aligned_cols=49 Identities=16% Similarity=0.020 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 012858 57 EYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (455)
Q Consensus 57 ~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 108 (455)
..|..||..-+.++ +|+.+.-+.|.-...++.|...=|++-|+|-....
T Consensus 17 ~~~~~IL~lL~~~g---~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG---ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp HHHHHHHHHHSSST---EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCC
Confidence 46778887666666 99999999998788999999999999999998633
No 126
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=23.40 E-value=39 Score=29.93 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=35.8
Q ss_pred CCccCCCCCCCCCCceeeeccCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 012858 194 KGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (455)
Q Consensus 194 ~~~~C~~Cg~dc~~~~y~c~k~~~~LC~~CF~~G~-~~~~~ss~dF~~i~~~~~~~~~~~~WT~~E~~~L 262 (455)
.-..|.-|+.. .+.+-+..-++.+|.+|-.--+ ++.+. .+++- . ..+..||.+|...|
T Consensus 36 ~N~~CaDCga~--~P~WaS~n~GvfiC~~CsgiHR~LG~hI---S~VrS--l----~LD~~W~~~~l~~m 94 (144)
T 2p57_A 36 TNKACFDCGAK--NPSWASITYGVFLCIDCSGVHRSLGVHL---SFIRS--T----ELDSNWNWFQLRCM 94 (144)
T ss_dssp GGGBCTTTCCB--SCCEEEGGGTEEECHHHHHHHHHHCTTT---CCEEE--S----SSCCCCCHHHHHHH
T ss_pred CCCcCCCCcCC--CCCeEEeccCEEEhhhchHHHcCCCCCC---Ceeee--c----ccCCCCCHHHHHHH
Confidence 34578888864 4566677778899999987543 45443 23331 1 12335998776655
No 127
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=23.30 E-value=1.2e+02 Score=23.57 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 012858 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (455)
Q Consensus 58 ~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 106 (455)
.|-.|+..- . ..+|+++..+.+.-....+.|...-|+..|||...
T Consensus 32 ~r~~Il~~L-~---~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 32 VRRKILRML-D---KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHHHHHHHH-H---TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-c---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 455676655 3 34899999888877888999999999999999743
No 128
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=23.15 E-value=58 Score=25.81 Aligned_cols=29 Identities=7% Similarity=-0.161 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHcCCCHHHHHhHCCC
Q 012858 254 WTEAETLLLLESVMRHGDNWELVAQNVPT 282 (455)
Q Consensus 254 WT~~E~~~LLe~Ie~~g~nW~~Ia~~Vgt 282 (455)
+.+-|...|.++++.+++|..+.|+.+|-
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 44556778899999999999999999993
No 129
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=23.10 E-value=46 Score=30.15 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=36.3
Q ss_pred CccCCCCCCCCCCceeeeccCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 012858 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (455)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~c~k~~~~LC~~CF~~G~-~~~~~ss~dF~~i~~~~~~~~~~~~WT~~E~~~L 262 (455)
-..|.-|+.. .+.+-+..-++.||.+|-.--+ ++.|.+ +++ ... -..||.+|...|
T Consensus 22 N~~CaDCga~--~P~WaS~nlGvflCi~CSGiHR~LG~hIS---kVK--Slt-----LD~Wt~e~l~~m 78 (163)
T 3sub_A 22 NNKCFDCGIS--NPDWVSVNHGIFLCINCSGVHRSLGVHIS---IVR--SIK-----MDIFTDEQLKYI 78 (163)
T ss_dssp GGBCTTTCCB--SCCEEETTTTEEECHHHHHHHHHTCTTTC---CEE--ETT-----TCCCCHHHHHHH
T ss_pred CCccccCCCC--CCCeEEecCCeeEHHhhhHHhcCCCCCCC---eee--ecc-----ccCcCHHHHHHH
Confidence 4578888875 4566677788999999987554 454432 232 211 246999886554
No 130
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=22.99 E-value=1.1e+02 Score=23.42 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=32.1
Q ss_pred eeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 012858 73 RLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (455)
Q Consensus 73 yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 108 (455)
.+|+++..+.+.-+...+.|+..-|+..|+|....+
T Consensus 34 ~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 34 GMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 489999999998799999999999999999986554
No 131
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=22.83 E-value=39 Score=31.36 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=48.4
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccC
Q 012858 49 SRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (455)
Q Consensus 49 ~ktpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 107 (455)
+..+.+|-.||+.|+.- +..|...|+..+....+.---..|.+-..-|+.-|||-...
T Consensus 26 s~~~~v~~~L~~~I~~g-~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDG-SLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp GHHHHHHHHHHHHHHTS-SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccHHHHHHHHHHHHHhC-CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34667999999999984 34799999999988888666788999999999999997543
No 132
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=22.40 E-value=89 Score=25.19 Aligned_cols=44 Identities=7% Similarity=0.025 Sum_probs=35.5
Q ss_pred HHHHHHhCCCceeeHHHHHhhccc----hHHHHHHHHHHhhhhccccccCC
Q 012858 62 MINKYREEPSRRLTFTQVRKSLVG----DVSLLHKVFRLLDEWGLINFGAV 108 (455)
Q Consensus 62 ii~~yr~np~~yLT~t~~r~~l~g----Dv~~i~Rvh~FLe~wGlINy~~~ 108 (455)
|.-.|... .+|+.+..+.+.- +-..+.++..-|+..|+|--..+
T Consensus 16 L~~L~~~~---~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~ 63 (126)
T 1sd4_A 16 MNIIWDKK---SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS 63 (126)
T ss_dssp HHHHHHSS---SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHhcC---CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeC
Confidence 44567743 4899999988863 68999999999999999987654
No 133
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=22.38 E-value=1.3e+02 Score=28.20 Aligned_cols=54 Identities=22% Similarity=0.210 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 012858 51 TPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (455)
Q Consensus 51 tpe~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 104 (455)
-++.+.++++.|...|+..+...-++.+....+.-|-..+..++..|.+-|.|=
T Consensus 135 ~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv 188 (258)
T 1lva_A 135 FSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLV 188 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEE
Confidence 456899999999999999998888999988888878888999999999999764
No 134
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=22.09 E-value=1.4e+02 Score=22.74 Aligned_cols=49 Identities=24% Similarity=0.222 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 012858 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (455)
Q Consensus 58 ~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 108 (455)
.|-.|+..-..+ ..+|+++..+.+.-+-..+.|...-|+..|+|.....
T Consensus 17 ~~~~iL~~L~~~--~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~ 65 (100)
T 1ub9_A 17 VRLGIMIFLLPR--RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKV 65 (100)
T ss_dssp HHHHHHHHHHHH--SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 345566543333 3699999999997789999999999999999986543
No 135
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.77 E-value=86 Score=27.85 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=35.7
Q ss_pred CCccCCCCCCCCCCceeeeccCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 012858 194 KGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (455)
Q Consensus 194 ~~~~C~~Cg~dc~~~~y~c~k~~~~LC~~CF~~G~-~~~~~ss~dF~~i~~~~~~~~~~~~WT~~E~~~L 262 (455)
.-..|.-|+.. .+.+-+..-++.+|.+|-.--+ ++.|.+ |++ .. ..+..||.+|...|
T Consensus 28 ~N~~CaDCga~--~P~WaS~n~GvfiC~~CsgiHR~LG~hiS---~Vr--Sl----~LD~~W~~~~l~~m 86 (149)
T 2crw_A 28 TNKVCFDCGAK--NPSWASITYGVFLCIDCSGSHRSLGVHLS---FIR--ST----ELDSNWSWFQLRCM 86 (149)
T ss_dssp TTSBCSSSCCB--SCCCEETTTTEECCHHHHHHHHHHCTTTC---CEE--CS----SSCCCCCHHHHHHH
T ss_pred CCCcCCCCcCC--CCCcEEeccCEEEchhcchhhccCCCCCC---eee--cc----ccCCCCCHHHHHHH
Confidence 34578888764 4566677778899999987553 454432 333 21 12335998765544
No 136
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=21.75 E-value=29 Score=27.72 Aligned_cols=54 Identities=13% Similarity=0.266 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhccccc
Q 012858 51 TPKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105 (455)
Q Consensus 51 tpe~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy 105 (455)
.-.+|-.+|..|+... ..|...| |..+..+.+.--...+.|.+.-|+..|||-.
T Consensus 13 ~~~l~~~i~~~I~~~~-l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 13 YADVATHFRTLIKSGE-LAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS 67 (102)
T ss_dssp HHHHHHHHHHHTTTTS-CCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE
T ss_pred HHHHHHHHHHHHHhCC-CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3467777777777622 3577888 9999888887667889999999999999953
No 137
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=21.65 E-value=60 Score=25.68 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHhHCC
Q 012858 256 EAETLLLLESVMRHGDNWELVAQNVP 281 (455)
Q Consensus 256 ~~E~~~LLe~Ie~~g~nW~~Ia~~Vg 281 (455)
.-|...|.++++.+++|..+.|+.+|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45777899999999999999999999
No 138
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=21.54 E-value=36 Score=29.10 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=33.6
Q ss_pred HHHHHHHHcCC--------CHHHHHhHCCCCCHHHHHHHHHc--CCCCCccCCCcc
Q 012858 261 LLLESVMRHGD--------NWELVAQNVPTKSKLDCISKLIE--LPFGEFMMGSAH 306 (455)
Q Consensus 261 ~LLe~Ie~~g~--------nW~~Ia~~VgtKT~~eC~~hflq--LPIeD~~L~~~~ 306 (455)
+|-..|.+.|| .|.+|++.+|-.+...-..+|.+ +|.|. |+...+
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~-~~~~~~ 106 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER-HMISQE 106 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH-HSCTTC
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH-HHhCcc
Confidence 57777887774 79999999997667777777776 67776 665443
No 139
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=21.02 E-value=1.4e+02 Score=24.02 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=33.7
Q ss_pred HHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 012858 62 MINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (455)
Q Consensus 62 ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 104 (455)
|++.-+. ...+++++..+.+.-....|.|....|++.|+|-
T Consensus 7 Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 7 VRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4443343 4689999999999888899999999999999875
No 140
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=20.69 E-value=1e+02 Score=23.97 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCceeeHHHHHhhcc-----c--------hHHHHHHHHHHhhhhccccccCC
Q 012858 61 FMINKYREEPSRRLTFTQVRKSLV-----G--------DVSLLHKVFRLLDEWGLINFGAV 108 (455)
Q Consensus 61 ~ii~~yr~np~~yLT~t~~r~~l~-----g--------Dv~~i~Rvh~FLe~wGlINy~~~ 108 (455)
+++..+..-+-..||..+++..+. | -...+..++.|+-.+|+|...+.
T Consensus 38 ~i~~~~g~~~l~~it~~~i~~~~~~l~~~g~s~~t~~~~~~~l~~~~~~a~~~~~i~~nP~ 98 (118)
T 2kd1_A 38 RIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVA 98 (118)
T ss_dssp THHHHTTSSBGGGCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred hhhHhhCcCCHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCcccCcc
Confidence 344433333555677766654431 1 34567788889999999875443
No 141
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=20.36 E-value=30 Score=27.61 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHhHCCC
Q 012858 256 EAETLLLLESVMRHGDNWELVAQNVPT 282 (455)
Q Consensus 256 ~~E~~~LLe~Ie~~g~nW~~Ia~~Vgt 282 (455)
.+|...||+ |.||...|+++|-
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~Lg~ 33 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGELGY 33 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHTTC
T ss_pred HHHHHHHhC-----cCCHHHHHHHcCC
Confidence 467778888 9999999999996
No 142
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.30 E-value=47 Score=25.38 Aligned_cols=32 Identities=19% Similarity=0.551 Sum_probs=24.4
Q ss_pred cCCccCCCCCCCCCCceeeeccCCcccchhhhhc
Q 012858 193 LKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKN 226 (455)
Q Consensus 193 ~~~~~C~~Cg~dc~~~~y~c~k~~~~LC~~CF~~ 226 (455)
..-+.|..|+..+...+| .+.+...|..||..
T Consensus 39 ~~CF~C~~C~~~L~~~~f--~~~g~~yC~~cy~~ 70 (79)
T 2cor_A 39 PDHFNCANCGKELTADAR--ELKGELYCLPCHDK 70 (79)
T ss_dssp TTTSBCSSSCCBCCTTCE--EETTEEECHHHHHT
T ss_pred CCCCEeCCCCCccCCCCE--eECCEEeCHHHHHH
Confidence 345778999999887755 55777889999964
No 143
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=20.11 E-value=52 Score=28.65 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=35.8
Q ss_pred CccCCCCCCCCCCceeeeccCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 012858 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (455)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~c~k~~~~LC~~CF~~G~-~~~~~ss~dF~~i~~~~~~~~~~~~WT~~E~~~L 262 (455)
-..|.-|+.. .+.+-+..-++.+|.+|-.--+ +|.|.+ +++ .. .-..||.+|...|
T Consensus 27 N~~CaDCg~~--~P~WaS~n~GvfiC~~CsgiHR~lG~hiS---~Vk--Sl-----~ld~w~~~~l~~m 83 (134)
T 2iqj_A 27 NKFCADCQSK--GPRWASWNIGVFICIRCAGIHRNLGVHIS---RVK--SV-----NLDQWTQEQIQCM 83 (134)
T ss_dssp GGBCTTTCCB--SCCEEETTTTEEECHHHHHHHHHHCTTTC---CEE--ET-----TTSCCCHHHHHHH
T ss_pred CCcCCcCcCC--CCCeEEecCCEEEhHhhhHHHhcCCCCCC---cee--ec-----cccCCCHHHHHHH
Confidence 4568888765 4566677788999999987553 454432 232 21 1246999876555
No 144
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=20.09 E-value=1.4e+02 Score=23.20 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=33.8
Q ss_pred HHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccc
Q 012858 61 FMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLI 103 (455)
Q Consensus 61 ~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 103 (455)
.|++.-+. ...+++++..+.+.-....|.|-...|++.|+|
T Consensus 6 ~Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 6 QVRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 34444344 468999999999988899999999999999988
Done!