BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012859
         (455 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
 pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
 pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
          Length = 675

 Score = 33.5 bits (75), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 261 LKVIVARMAHQLQDEHDVIRGSPLVQPNDNLFWFNRPKFVLTLLHYTLFMNAF 313
           L +  A M H L DE  V+R +P      N +WFNR +FVL+  H  +   A 
Sbjct: 41  LPMGCAPMGHVLYDE--VMRYNP-----KNPYWFNRDRFVLSAGHGCMLQYAL 86


>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
           Bound To Actin
 pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
           Bound To Actin
 pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
           Bound To Actin
 pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
           Bound To Actin
          Length = 402

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 101 VYCVLTMALGRAKMKQWKAWERETQTVEYLAANDPNRFRLTRDTTFARRHTSCTSFTGTA 160
           V C++      A++K  + +ERE Q +E LAA D  RF L     F++         G A
Sbjct: 126 VECLMRFLPTEAEVKLLRQYERERQPLEELAAED--RFML----LFSKVERLTQRMAGMA 179

Query: 161 FL 162
           FL
Sbjct: 180 FL 181


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.134    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,437,627
Number of Sequences: 62578
Number of extensions: 465972
Number of successful extensions: 1164
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1163
Number of HSP's gapped (non-prelim): 3
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)