Query 012859
Match_columns 455
No_of_seqs 148 out of 246
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 4E-162 9E-167 1255.9 31.1 382 1-399 63-444 (478)
2 PF12129 Phtf-FEM1B_bdg: Male 44.0 59 0.0013 31.1 5.8 21 247-267 129-149 (159)
3 TIGR03777 RPE4 Rickettsial pal 32.0 21 0.00045 25.7 0.7 9 282-290 24-32 (32)
4 PF15468 DUF4636: Domain of un 26.3 21 0.00046 35.7 -0.1 38 204-246 25-62 (243)
5 PF14981 FAM165: FAM165 family 20.5 3.3E+02 0.0071 21.4 5.3 37 89-128 7-43 (51)
6 PF15444 TMEM247: Transmembran 20.4 1.1E+02 0.0025 30.0 3.5 23 92-114 193-215 (218)
7 PF01956 DUF106: Integral memb 17.7 95 0.0021 28.6 2.3 43 187-233 113-155 (168)
8 COG3114 CcmD Heme exporter pro 17.4 1.4E+02 0.0029 24.9 2.8 40 234-273 9-57 (67)
9 KOG3801 Uncharacterized conser 17.2 1.8E+02 0.0039 25.6 3.7 42 174-218 2-43 (94)
10 PF13198 DUF4014: Protein of u 14.8 2.4E+02 0.0052 23.8 3.7 30 227-265 19-48 (72)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=4.1e-162 Score=1255.86 Aligned_cols=382 Identities=55% Similarity=1.016 Sum_probs=363.3
Q ss_pred CcchhhcchhccccccccccccCccccCCCCCcccccccccccchhhcccchhhhhhccCCCCCccCCCccCcCCcccce
Q 012859 1 MSLILTVTQRSISKICIPTKVADTMLPCHQSPEIKTTRALGYHEQFLWTDSLRERRLAADEPVSATSNDHCGSKGMSSLI 80 (455)
Q Consensus 1 ISLLLtv~Q~~IskICIp~s~~~~mlPC~~~~~~~~~~~~~~~~~~~~~~~~~~RRlLa~~~~~~~~~~~C~~kGkvpli 80 (455)
||||||++|++|+|||||++++++|+||+..++.... .+ ...+||+|+.+. +.+.++|++||||||+
T Consensus 63 iSLlLt~~q~~IskICIp~~~~~~~lPC~~~~~~~~~--~~---------~~~~r~ll~~~~--~~~~~~C~~kGkvpli 129 (478)
T PF03094_consen 63 ISLLLTVFQNPISKICIPSSYASTMLPCKPPEESSKE--GS---------SHNRRRLLASGA--AEGSDYCPKKGKVPLI 129 (478)
T ss_pred HHHHHHHHHHhHhHeecChhHHhcccCCCCccccccc--cc---------chhhhhhhhhhc--ccccCcccccCccccc
Confidence 7999999999999999999999999999873222111 10 135788987421 3356799999999999
Q ss_pred ecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhcCCCCceeeeccchhhccccCCccCCCch
Q 012859 81 SQDGLNQLNIFIFVLAVMQIVYCVLTMALGRAKMKQWKAWERETQTVEYLAANDPNRFRLTRDTTFARRHTSCTSFTGTA 160 (455)
Q Consensus 81 S~egLHQLHIFIFVLAv~HV~Ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~~~~~dp~r~r~~~qt~F~r~h~~~~~w~~~~ 160 (455)
|.|||||||||||||||+||+|||+||+||++|||+||+||+|+++++|+..+||+|+|++||++|+|+|++. |++++
T Consensus 130 S~egLHQLHIFIFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~--w~~~~ 207 (478)
T PF03094_consen 130 SAEGLHQLHIFIFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSF--WSKSP 207 (478)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcceeeeecccHHHHhhcCC--cccCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred hHHHHHHHHhhhccCcchhhHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHhhccccceeechHHHHHHHHHhhhccCCc
Q 012859 161 FLLWTKCFFQQFFNSVAKVDYLTLRHGFVSAHLSSTNYNSFNFQNYIQRSLEDDFKVVVGISPFMWFVVVIFLLVDVHGW 240 (455)
Q Consensus 161 ~l~wi~cFfrQF~~SVtksDYltLR~gFI~~H~~~~~~~~FdF~~Yi~RsLE~DFk~VVGIS~~lW~fvviFLLlnv~Gw 240 (455)
++.|++|||||||+||+|+||+|||+|||++|++| | ++|||||||+||||||||+||||||+||+|||+|||+|++||
T Consensus 208 ~~~wi~~FfrQF~~SV~k~DYltLR~gFI~~H~~~-~-~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw 285 (478)
T PF03094_consen 208 VLSWIVCFFRQFYGSVTKSDYLTLRHGFITAHLLP-N-PKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGW 285 (478)
T ss_pred hHHhHHHHHHHhhccccHHHHHHHHHHHHHhhcCC-C-CCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcc
Confidence 99999999999999999999999999999999999 8 999999999999999999999999999999999999999999
Q ss_pred eeeeehhhhHHHHHHHHhhhHHHHHHHHHHHhhhccccccCCccccCCCCccccCcchHHHHHHHHHHHhhhhHHHHHhh
Q 012859 241 NAYLWVSFIPLTIVLALGTKLKVIVARMAHQLQDEHDVIRGSPLVQPNDNLFWFNRPKFVLTLLHYTLFMNAFEMAFVVW 320 (455)
Q Consensus 241 ~~yfWlsfiPlillLlVGtKLq~IIt~lAlei~e~~~~v~G~~~V~psD~~FWF~rP~llL~LIhfiLFQNAFelAfF~W 320 (455)
|+|||+||||++++|+||||||+||++||+|++|++++++|+|+|||+|++|||+||+|||+||||+|||||||||||+|
T Consensus 286 ~~yfW~sfipl~liL~VGtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w 365 (478)
T PF03094_consen 286 HTYFWLSFIPLILILLVGTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFW 365 (478)
T ss_pred eeEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCceeeecCcceeeeehhhhhhhhccccccccchhhHhhhcCcccchhhhhHHHHHHHHHHHHhhhhhcccccc
Q 012859 321 VTWQYGIKSCYHKTKAIIIIRVVLAVMVQVTCSYITLPLYALVTQMGSTFKRTALEEQTSNVIKQRHSGVSQKRKTQQR 399 (455)
Q Consensus 321 ~~~~fG~~SC~~~~~~~ii~Rl~~gv~vq~lCSY~TLPLYALVTQMGS~~K~~if~e~v~~~L~~W~~~ak~k~~~~~~ 399 (455)
+||+||++||||++.+++++|+++|+++|++|||+|||||||||||||+||++||+|+|+++|++||++||||++++++
T Consensus 366 ~~~~~g~~sC~~~~~~~~i~rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~~~ 444 (478)
T PF03094_consen 366 IWWQFGFDSCFMENTEYIIIRLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHKKS 444 (478)
T ss_pred HHhcCCCceeEecCccceeeehhhhhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888773
No 2
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=43.99 E-value=59 Score=31.06 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHhhhHHHHHHH
Q 012859 247 SFIPLTIVLALGTKLKVIVAR 267 (455)
Q Consensus 247 sfiPlillLlVGtKLq~IIt~ 267 (455)
-++|+.|+|++||==-+|+++
T Consensus 129 v~~Pi~LmLlLg~VH~QIVST 149 (159)
T PF12129_consen 129 VFGPICLMLLLGTVHCQIVST 149 (159)
T ss_pred HHHHHHHHHHHHHhhheeeec
Confidence 389999999999765555543
No 3
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=32.03 E-value=21 Score=25.68 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=7.2
Q ss_pred CccccCCCC
Q 012859 282 SPLVQPNDN 290 (455)
Q Consensus 282 ~~~V~psD~ 290 (455)
+|+|||+||
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 578888886
No 4
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=26.32 E-value=21 Score=35.71 Aligned_cols=38 Identities=34% Similarity=0.676 Sum_probs=25.7
Q ss_pred HHHHHHHHhhccccceeechHHHHHHHHHhhhccCCceeeeeh
Q 012859 204 QNYIQRSLEDDFKVVVGISPFMWFVVVIFLLVDVHGWNAYLWV 246 (455)
Q Consensus 204 ~~Yi~RsLE~DFk~VVGIS~~lW~fvviFLLlnv~Gw~~yfWl 246 (455)
++|=.| +||+-.++| +..||.||+|++|.=. -+.++||
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wm 62 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWM 62 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHH
Confidence 445444 899888887 7899999988765421 3455564
No 5
>PF14981 FAM165: FAM165 family
Probab=20.50 E-value=3.3e+02 Score=21.41 Aligned_cols=37 Identities=27% Similarity=0.564 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhh
Q 012859 89 NIFIFVLAVMQIVYCVLTMALGRAKMKQWKAWERETQTVE 128 (455)
Q Consensus 89 HIFIFVLAv~HV~Ys~lTm~Lg~~Kir~Wk~WE~e~~~~~ 128 (455)
-.....||.=-.+.| +++++.||++=|+-|...+..+
T Consensus 7 PlLlYILaaKtlilC---laFAgvK~yQ~krlEak~~k~~ 43 (51)
T PF14981_consen 7 PLLLYILAAKTLILC---LAFAGVKMYQRKRLEAKLKKLE 43 (51)
T ss_pred hHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHH
Confidence 346777887766665 5789999999999998877654
No 6
>PF15444 TMEM247: Transmembrane protein 247
Probab=20.40 E-value=1.1e+02 Score=30.03 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012859 92 IFVLAVMQIVYCVLTMALGRAKM 114 (455)
Q Consensus 92 IFVLAv~HV~Ys~lTm~Lg~~Ki 114 (455)
||+|--=|-+||+.+++|...|.
T Consensus 193 vfflfskhylfciaaillclikt 215 (218)
T PF15444_consen 193 VFFLFSKHYLFCIAAILLCLIKT 215 (218)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 46777779999999999999884
No 7
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=17.74 E-value=95 Score=28.61 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=24.0
Q ss_pred HHHhhhcCCCCCCCCcHHHHHHHHHhhccccceeechHHHHHHHHHh
Q 012859 187 GFVSAHLSSTNYNSFNFQNYIQRSLEDDFKVVVGISPFMWFVVVIFL 233 (455)
Q Consensus 187 gFI~~H~~~~~~~~FdF~~Yi~RsLE~DFk~VVGIS~~lW~fvviFL 233 (455)
||+.+-.+= . +...|+.-..|.+++..- --.||..|-|.+.|-
T Consensus 113 g~vv~klPF-p-l~~~f~~~~qrgl~~~d~--~~~s~i~wYfL~s~~ 155 (168)
T PF01956_consen 113 GFVVAKLPF-P-LTGRFKSMLQRGLEGLDV--SYVSSISWYFLCSFG 155 (168)
T ss_pred hcceEEeec-c-ccHHHhHHhhcCCCCCcc--cHhHHHHHHHHHHHH
Confidence 555443322 2 567788888888844222 224666666666543
No 8
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=17.38 E-value=1.4e+02 Score=24.89 Aligned_cols=40 Identities=18% Similarity=0.569 Sum_probs=22.8
Q ss_pred hhccCCceeeeeh----hhhHHHHHHHHhh-----hHHHHHHHHHHHhh
Q 012859 234 LVDVHGWNAYLWV----SFIPLTIVLALGT-----KLKVIVARMAHQLQ 273 (455)
Q Consensus 234 Llnv~Gw~~yfWl----sfiPlillLlVGt-----KLq~IIt~lAlei~ 273 (455)
++|..|...|-|+ +.+|++++++.-- -|+.|.-+.|-|..
T Consensus 9 FfaMGgyafyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~r~~aReaR 57 (67)
T COG3114 9 FFAMGGYAFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVARQRAREAR 57 (67)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777776 4566665554432 24555556665543
No 9
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=17.15 E-value=1.8e+02 Score=25.63 Aligned_cols=42 Identities=21% Similarity=0.436 Sum_probs=36.1
Q ss_pred cCcchhhHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHhhccccc
Q 012859 174 NSVAKVDYLTLRHGFVSAHLSSTNYNSFNFQNYIQRSLEDDFKVV 218 (455)
Q Consensus 174 ~SVtksDYltLR~gFI~~H~~~~~~~~FdF~~Yi~RsLE~DFk~V 218 (455)
.+|++.+-+.|=..+|.+-..= |.|||..|-.|-.-|-|+.-
T Consensus 2 ~~~sr~qvlsLyr~~lr~s~qf---p~YNyReY~~RrtRD~Fr~N 43 (94)
T KOG3801|consen 2 QMVSRRQVLSLYRNLLRESKQF---PQYNYREYFQRRTRDTFRAN 43 (94)
T ss_pred CcccHHHHHHHHHHHHHHHhhC---CcccHHHHHHHHHHHHHHHh
Confidence 4688999999999999887655 78999999999999999763
No 10
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=14.79 E-value=2.4e+02 Score=23.83 Aligned_cols=30 Identities=17% Similarity=0.522 Sum_probs=22.7
Q ss_pred HHHHHHhhhccCCceeeeehhhhHHHHHHHHhhhHHHHH
Q 012859 227 FVVVIFLLVDVHGWNAYLWVSFIPLTIVLALGTKLKVIV 265 (455)
Q Consensus 227 ~fvviFLLlnv~Gw~~yfWlsfiPlillLlVGtKLq~II 265 (455)
+|.++|+++= ++..|++++.++|--.|.++
T Consensus 19 LF~ilfIvlm---------ipI~pll~~~~i~~~~E~l~ 48 (72)
T PF13198_consen 19 LFFILFIVLM---------IPISPLLFVWIIGKIIEPLF 48 (72)
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 5777777762 78899999999997555544
Done!