Query 012859
Match_columns 455
No_of_seqs 148 out of 246
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 17:36:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 24.1 2E+02 0.007 23.0 6.5 22 114-135 41-62 (79)
2 1zkl_A HCP1, TM22, high-affini 13.1 77 0.0026 31.8 2.0 46 353-398 289-334 (353)
3 2j3w_A Sedlin, trafficking pro 10.4 1.2E+02 0.0042 26.2 2.1 34 350-387 107-140 (142)
4 1wy3_A Villin; structural prot 9.9 44 0.0015 23.3 -0.7 12 212-223 3-14 (35)
5 1und_A Advillin, P92; actin bi 9.7 46 0.0016 23.4 -0.7 12 212-223 5-16 (37)
6 3si5_X Protein CASC5; BUBR1-bl 9.0 1.3E+02 0.0043 19.5 1.2 13 198-210 8-20 (24)
7 1jek_B ENV polyprotein; envelo 8.7 1.2E+02 0.004 21.4 1.1 13 116-128 1-13 (36)
8 2kv9_B Integrin beta-3; platel 7.9 1.7E+02 0.0058 23.6 1.8 25 106-130 29-53 (75)
9 1vf6_C Maguk P55 subfamily mem 7.8 1.8E+02 0.0063 23.2 1.9 18 298-315 40-57 (72)
10 2our_A CAMP and CAMP-inhibited 6.8 2.1E+02 0.0072 28.3 2.3 39 353-393 286-324 (331)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.06 E-value=2e+02 Score=22.97 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=15.6
Q ss_pred HHhHHHHHHhhhhhhhhhcCCC
Q 012859 114 MKQWKAWERETQTVEYLAANDP 135 (455)
Q Consensus 114 ir~Wk~WE~e~~~~~~~~~~dp 135 (455)
-|.++++|+|-++...+..++|
T Consensus 41 rrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 41 RKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHhcccccCCCC
Confidence 6789999999776654444444
No 2
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A*
Probab=13.14 E-value=77 Score=31.78 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=28.1
Q ss_pred cccccchhhHhhhcCcccchhhhhHHHHHHHHHHHHhhhhhccccc
Q 012859 353 SYITLPLYALVTQMGSTFKRTALEEQTSNVIKQRHSGVSQKRKTQQ 398 (455)
Q Consensus 353 SY~TLPLYALVTQMGS~~K~~if~e~v~~~L~~W~~~ak~k~~~~~ 398 (455)
.|+.+|||..++++...-...-.-+++.+.+..|.+.++++.+...
T Consensus 289 ~~vv~Pl~~~l~~~~~~p~~~~~l~~l~~N~~~W~~~~~~~~~~~~ 334 (353)
T 1zkl_A 289 TYLVEPLFTEWARFSNTRLSQTMLGHVGLNKASWKGLQREQSSSED 334 (353)
T ss_dssp HHTHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 5778999999998763212223457899999999988776554444
No 3
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=10.37 E-value=1.2e+02 Score=26.16 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=27.2
Q ss_pred ccccccccchhhHhhhcCcccchhhhhHHHHHHHHHHH
Q 012859 350 VTCSYITLPLYALVTQMGSTFKRTALEEQTSNVIKQRH 387 (455)
Q Consensus 350 ~lCSY~TLPLYALVTQMGS~~K~~if~e~v~~~L~~W~ 387 (455)
+.+-|+.=|+| +.|...+.+.|+++|.+.+++|.
T Consensus 107 ~Y~~~v~NPfy----~~~~pI~s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 107 LYIKFAMNPFY----EPNSPIRSSAFDRKVQFLGKKHL 140 (142)
T ss_dssp HHHHHHHSTTC----CTTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCC----CCCCceecHHHHHHHHHHHHHhc
Confidence 44556667888 45788999999999999999985
No 4
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=9.94 E-value=44 Score=23.28 Aligned_cols=12 Identities=42% Similarity=0.933 Sum_probs=9.5
Q ss_pred hhccccceeech
Q 012859 212 EDDFKVVVGISP 223 (455)
Q Consensus 212 E~DFk~VVGIS~ 223 (455)
++||+.|.|+|-
T Consensus 3 d~dF~~vFgmsr 14 (35)
T 1wy3_A 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 578888888874
No 5
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=9.71 E-value=46 Score=23.45 Aligned_cols=12 Identities=50% Similarity=0.783 Sum_probs=9.8
Q ss_pred hhccccceeech
Q 012859 212 EDDFKVVVGISP 223 (455)
Q Consensus 212 E~DFk~VVGIS~ 223 (455)
++||+.|.|+|-
T Consensus 5 d~dF~~vFgmsr 16 (37)
T 1und_A 5 EQDFVSVFGITR 16 (37)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 578888888875
No 6
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=8.96 E-value=1.3e+02 Score=19.48 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.8
Q ss_pred CCCCcHHHHHHHH
Q 012859 198 YNSFNFQNYIQRS 210 (455)
Q Consensus 198 ~~~FdF~~Yi~Rs 210 (455)
+.|.||.+||+|-
T Consensus 8 ekKinfndFIKRL 20 (24)
T 3si5_X 8 ENKIDFNDFIKRL 20 (26)
T ss_pred hhhccHHHHHHHH
Confidence 3689999999984
No 7
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=8.73 E-value=1.2e+02 Score=21.44 Aligned_cols=13 Identities=38% Similarity=1.025 Sum_probs=9.6
Q ss_pred hHHHHHHhhhhhh
Q 012859 116 QWKAWERETQTVE 128 (455)
Q Consensus 116 ~Wk~WE~e~~~~~ 128 (455)
.|-.||+++...+
T Consensus 1 TWqqWereI~~~t 13 (36)
T 1jek_B 1 XWQQWEEEIEQHE 13 (36)
T ss_dssp -CHHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 3899999987643
No 8
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=7.92 E-value=1.7e+02 Score=23.63 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhh
Q 012859 106 TMALGRAKMKQWKAWERETQTVEYL 130 (455)
Q Consensus 106 Tm~Lg~~Kir~Wk~WE~e~~~~~~~ 130 (455)
-+++.+---|.|+++|+|-++...+
T Consensus 29 Kll~~i~DrREyaKFEkEr~~akw~ 53 (75)
T 2kv9_B 29 KLLITIHDRKEFAKFEEERARAKWD 53 (75)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHGGGS
T ss_pred HHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3344444568999999997655443
No 9
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=7.80 E-value=1.8e+02 Score=23.19 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHhhhhHH
Q 012859 298 KFVLTLLHYTLFMNAFEM 315 (455)
Q Consensus 298 ~llL~LIhfiLFQNAFel 315 (455)
.+||-|.|=.=|||||-|
T Consensus 40 ~lllqL~~~~DFQ~A~kI 57 (72)
T 1vf6_C 40 SLLLQLVQNRDFQNAFKI 57 (72)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 578999999999999976
No 10
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=6.84 E-value=2.1e+02 Score=28.27 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=30.9
Q ss_pred cccccchhhHhhhcCcccchhhhhHHHHHHHHHHHHhhhhh
Q 012859 353 SYITLPLYALVTQMGSTFKRTALEEQTSNVIKQRHSGVSQK 393 (455)
Q Consensus 353 SY~TLPLYALVTQMGS~~K~~if~e~v~~~L~~W~~~ak~k 393 (455)
.|+.+|||..++++-..++. .-+++.+.+..|.+.++++
T Consensus 286 ~~vv~Pl~~~l~~~~p~~~~--~~~~l~~N~~~W~~~~~~~ 324 (331)
T 2our_A 286 NAVAIPCYTTLTQILPPTEP--LLKACRDNLSQWEKVIRGE 324 (331)
T ss_dssp HHTHHHHHHHHHHHCGGGHH--HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHChhhHH--HHHHHHHHHHHHHHHHhCC
Confidence 48899999999998655553 3488999999998877654
Done!