Query 012859
Match_columns 455
No_of_seqs 148 out of 246
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 17:37:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012859.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012859hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 26.8 15 0.0011 25.8 1.9 18 298-315 29-46 (51)
2 d1xrda1 f.3.1.1 (A:1-52) Light 12.2 47 0.0034 23.4 1.8 14 85-98 14-27 (52)
3 d1q1ha_ a.4.5.41 (A:) Transcri 11.6 32 0.0023 26.7 0.8 9 238-246 73-81 (88)
4 d1yu8x1 a.14.1.1 (X:42-76) Vil 9.9 21 0.0015 23.4 -0.7 12 212-223 3-14 (35)
5 d1unda_ a.14.1.1 (A:) Advillin 9.7 21 0.0016 23.4 -0.7 12 212-223 4-15 (36)
6 d1ug0a_ a.217.1.1 (A:) Splicin 7.6 65 0.0047 24.3 1.2 37 259-295 25-62 (88)
7 d2j3wa1 d.110.4.3 (A:1-140) Se 7.0 57 0.0042 26.4 0.6 41 343-387 98-138 (140)
8 d3dy8a1 a.211.1.2 (A:182-505) 5.6 1E+02 0.0073 28.0 1.6 41 352-393 276-316 (324)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 5.6 1.7E+02 0.012 19.0 2.2 13 90-102 22-34 (37)
10 d1qzpa_ a.14.1.1 (A:) Dematin 5.0 57 0.0042 24.0 -0.5 12 212-223 36-47 (68)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.79 E-value=15 Score=25.78 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhhhhHH
Q 012859 298 KFVLTLLHYTLFMNAFEM 315 (455)
Q Consensus 298 ~llL~LIhfiLFQNAFel 315 (455)
.++|.|.|=.=|||||.|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 689999999999999986
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=12.20 E-value=47 Score=23.45 Aligned_cols=14 Identities=50% Similarity=0.835 Sum_probs=11.1
Q ss_pred chhHHHHHHHHHHH
Q 012859 85 LNQLNIFIFVLAVM 98 (455)
Q Consensus 85 LHQLHIFIFVLAv~ 98 (455)
+--++.|+|+||+.
T Consensus 14 lva~~~fL~~LAl~ 27 (52)
T d1xrda1 14 LVGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44578999999964
No 3
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=11.65 E-value=32 Score=26.66 Aligned_cols=9 Identities=44% Similarity=1.368 Sum_probs=7.6
Q ss_pred CCceeeeeh
Q 012859 238 HGWNAYLWV 246 (455)
Q Consensus 238 ~Gw~~yfWl 246 (455)
.||++|+|-
T Consensus 73 ~gw~~Y~W~ 81 (88)
T d1q1ha_ 73 SGWFIYYWK 81 (88)
T ss_dssp CCCCEEEEE
T ss_pred CCcEEEEEE
Confidence 689999994
No 4
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.94 E-value=21 Score=23.36 Aligned_cols=12 Identities=42% Similarity=0.933 Sum_probs=9.4
Q ss_pred hhccccceeech
Q 012859 212 EDDFKVVVGISP 223 (455)
Q Consensus 212 E~DFk~VVGIS~ 223 (455)
++||+.|.|+|-
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 578888888874
No 5
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.73 E-value=21 Score=23.43 Aligned_cols=12 Identities=50% Similarity=0.783 Sum_probs=9.4
Q ss_pred hhccccceeech
Q 012859 212 EDDFKVVVGISP 223 (455)
Q Consensus 212 E~DFk~VVGIS~ 223 (455)
|+||..|.|+|-
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 578888888874
No 6
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.56 E-value=65 Score=24.26 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHhhhccccccCCccc-cCCCCccccC
Q 012859 259 TKLKVIVARMAHQLQDEHDVIRGSPLV-QPNDNLFWFN 295 (455)
Q Consensus 259 tKLq~IIt~lAlei~e~~~~v~G~~~V-~psD~~FWF~ 295 (455)
.++..||.++|.=|++.+...+-...- +.+|..|||=
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL 62 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFL 62 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCceee
Confidence 378899999998888766544432212 3578889984
No 7
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.01 E-value=57 Score=26.39 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=31.4
Q ss_pred hhhhhhhccccccccchhhHhhhcCcccchhhhhHHHHHHHHHHH
Q 012859 343 VLAVMVQVTCSYITLPLYALVTQMGSTFKRTALEEQTSNVIKQRH 387 (455)
Q Consensus 343 ~~gv~vq~lCSY~TLPLYALVTQMGS~~K~~if~e~v~~~L~~W~ 387 (455)
.+--+-++-+-|+.=|+|. .|+..+.+.|+++|++..++|-
T Consensus 98 ~~~~v~~lYv~~v~NPfy~----~~~pI~s~~Fd~~v~~~~~~~l 138 (140)
T d2j3wa1 98 FFTDVYDLYIKFAMNPFYE----PNSPIRSSAFDRKVQFLGKKHL 138 (140)
T ss_dssp HHHHHHHHHHHHHHSTTCC----TTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCccCC----CCCcccCHHHHHHHHHHHHHHc
Confidence 3333345556778889995 5677899999999999999984
No 8
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.62 E-value=1e+02 Score=27.97 Aligned_cols=41 Identities=7% Similarity=0.133 Sum_probs=30.7
Q ss_pred ccccccchhhHhhhcCcccchhhhhHHHHHHHHHHHHhhhhh
Q 012859 352 CSYITLPLYALVTQMGSTFKRTALEEQTSNVIKQRHSGVSQK 393 (455)
Q Consensus 352 CSY~TLPLYALVTQMGS~~K~~if~e~v~~~L~~W~~~ak~k 393 (455)
..++.+|||..+++.-..++. ..-+++.+-+..|.+..|.-
T Consensus 276 i~~vv~Pl~~~l~~~~p~l~~-~~~~~l~~N~~~W~~~~~~~ 316 (324)
T d3dy8a1 276 IKFVLIPMFETVTKLFPMVEE-IMLQPLWESRDRYEELKRID 316 (324)
T ss_dssp HHHTHHHHHHHHHHHCTTHHH-HTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 578889999999998665543 23467888999998766543
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.62 E-value=1.7e+02 Score=18.99 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH
Q 012859 90 IFIFVLAVMQIVY 102 (455)
Q Consensus 90 IFIFVLAv~HV~Y 102 (455)
.+||||||.--.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4899999865444
No 10
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.02 E-value=57 Score=24.02 Aligned_cols=12 Identities=42% Similarity=0.800 Sum_probs=9.4
Q ss_pred hhccccceeech
Q 012859 212 EDDFKVVVGISP 223 (455)
Q Consensus 212 E~DFk~VVGIS~ 223 (455)
++||+.|.|+|.
T Consensus 36 d~dF~~vFgms~ 47 (68)
T d1qzpa_ 36 AEDFSRVFAMSP 47 (68)
T ss_dssp HHHHHHHSSSCH
T ss_pred HHHHHHHHCcCH
Confidence 578888888875
Done!