BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012861
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 231 bits (588), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 144/215 (66%), Gaps = 3/215 (1%)
Query: 27 ADKIISLPGQPQASFQQYAGYITIDEKQQRALFYYFVEAATEAASKPLVLWLNGGPGCSS 86
AD+I LPGQP F Y+GYIT+DE R+LFY EA +A PLVLWLNGGPGCSS
Sbjct: 8 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 87 IGAGAFCEHGPF--KPSGDTLLRNEYSWNKEANMLYLESPAGVGFSYSANKSFYGSVNDA 144
+ GA E G F KP+G L+ NEY WNK AN+L+L+SPAGVGFSY+ S + D
Sbjct: 68 VAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 145 IAARDNLAFLEGWYEKFPEYKNREFFITGESYAGHYVPQLAQLIIQS-NMKLNLKGIAIG 203
A D+ AFL W+E+FP YK R+F+I GESYAGHYVP+L+QL+ +S N +NLKG +G
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVG 187
Query: 204 NPLLEFNTDFNSRAEFLWSHGLISDSTYDIFTRVC 238
N L++ D+ EF W+HG++SD TY C
Sbjct: 188 NGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 143/215 (66%), Gaps = 3/215 (1%)
Query: 27 ADKIISLPGQPQASFQQYAGYITIDEKQQRALFYYFVEAATEAASKPLVLWLNGGPGCSS 86
AD+I LPGQP F Y+GYIT+DE R+LFY EA +A PLVLWLNGGPGCSS
Sbjct: 8 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 87 IGAGAFCEHGPF--KPSGDTLLRNEYSWNKEANMLYLESPAGVGFSYSANKSFYGSVNDA 144
+ GA E G F KP G L+ NEY WNK AN+L+L+SPAGVGFSY+ S + D
Sbjct: 68 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 145 IAARDNLAFLEGWYEKFPEYKNREFFITGESYAGHYVPQLAQLIIQS-NMKLNLKGIAIG 203
A D+ AFL W+E+FP YK R+F+I GESYAGHYVP+L+QL+ +S N +NLKG +G
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVG 187
Query: 204 NPLLEFNTDFNSRAEFLWSHGLISDSTYDIFTRVC 238
N L++ D+ EF W+HG++SD TY C
Sbjct: 188 NGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 143/215 (66%), Gaps = 3/215 (1%)
Query: 27 ADKIISLPGQPQASFQQYAGYITIDEKQQRALFYYFVEAATEAASKPLVLWLNGGPGCSS 86
AD+I LPGQP F Y+GYIT+DE R+LFY EA +A PLVLWLNGGPGCSS
Sbjct: 4 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 63
Query: 87 IGAGAFCEHGPF--KPSGDTLLRNEYSWNKEANMLYLESPAGVGFSYSANKSFYGSVNDA 144
+ GA E G F KP G L+ NEY WNK AN+L+L+SPAGVGFSY+ S + D
Sbjct: 64 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 123
Query: 145 IAARDNLAFLEGWYEKFPEYKNREFFITGESYAGHYVPQLAQLIIQS-NMKLNLKGIAIG 203
A D+ AFL W+E+FP YK R+F+I GESYAGHYVP+L+QL+ +S N +NLKG +G
Sbjct: 124 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVG 183
Query: 204 NPLLEFNTDFNSRAEFLWSHGLISDSTYDIFTRVC 238
N L++ D+ EF W+HG++SD TY C
Sbjct: 184 NGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 218
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 143/215 (66%), Gaps = 3/215 (1%)
Query: 27 ADKIISLPGQPQASFQQYAGYITIDEKQQRALFYYFVEAATEAASKPLVLWLNGGPGCSS 86
AD+I LPGQP F Y+GYIT+DE R+LFY EA +A PLVLWLNGGPGCSS
Sbjct: 3 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 62
Query: 87 IGAGAFCEHGPF--KPSGDTLLRNEYSWNKEANMLYLESPAGVGFSYSANKSFYGSVNDA 144
+ GA E G F KP G L+ NEY WNK AN+L+L+SPAGVGFSY+ S + D
Sbjct: 63 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 122
Query: 145 IAARDNLAFLEGWYEKFPEYKNREFFITGESYAGHYVPQLAQLIIQS-NMKLNLKGIAIG 203
A D+ AFL W+E+FP YK R+F+I GESYAGHYVP+L+QL+ +S N +NLKG +G
Sbjct: 123 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVG 182
Query: 204 NPLLEFNTDFNSRAEFLWSHGLISDSTYDIFTRVC 238
N L++ D+ EF W+HG++SD TY C
Sbjct: 183 NGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 217
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 225 bits (574), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 235/462 (50%), Gaps = 47/462 (10%)
Query: 25 PQADKIISLPG-QPQASFQQYAGYITIDEKQQRALFYYFVEAATEAASKPLVLWLNGGPG 83
P D+I LPG Q SF+QY+GY+ + L Y+FVE+ + + P+VLWLNGGPG
Sbjct: 2 PDQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPG 59
Query: 84 CSSIGAGAFCEHGPF--KPSGDTLLRNEYSWNKEANMLYLESPAGVGFSYSANKSFYGSV 141
CSS+ G EHGPF +P G TL N YSWN AN+LYLESPAGVGFSYS +K FY +
Sbjct: 60 CSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDK-FYAT- 116
Query: 142 NDAIAARDNLAFLEGWYEKFPEYKNREFFITGESYAGHYVPQLAQLIIQSNMKLNLKGIA 201
ND A+ N L+ ++ FPEYKN + F+TGESYAG Y+P LA L++Q + +NL+G+A
Sbjct: 117 NDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ-DPSMNLQGLA 175
Query: 202 IGNPLLEFNTDFNSRAEFLWSHGLISDSTYDIFTRVC------------------NYSQI 243
+GN L + + NS F + HGL+ + + C N ++
Sbjct: 176 VGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEV 235
Query: 244 RRQYASGSLT-----AVCSQVISQVSREISRFVDTYDV-TLDVCLPSVLLQSKMLSQLQD 297
R + L A C+ + R V D+ + LP + + L + D
Sbjct: 236 ARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGD 295
Query: 298 KEEIDVCVEDET--TKYLNRKDVQKALHAQLIGVTSWTVCSEVLKYDMQNL-EIPTIHVL 354
K +D + T + YLN V+KAL+ + W +C+ ++ + L L
Sbjct: 296 KVRMDPPCTNTTAASTYLNNPYVRKALNIP-EQLPQWDMCNFLVNLQYRRLYRSMNSQYL 354
Query: 355 GKLAKSGIRVLVYSGDQDSVLPLTGTRTLVNGLAKEIGLNTTVPYRTWV-----EGRQAA 409
L+ ++L+Y+GD D G V+ L +++ V R W+ G Q A
Sbjct: 355 KLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKM----EVQRRPWLVKYGDSGEQIA 410
Query: 410 GWTQVYGDILSFATIRGASHEAPLSQPRRSLALFNAFLGGKP 451
G+ + + I +F TI+GA H P +P + +F+ FL +P
Sbjct: 411 GFVKEFSHI-AFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 451
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 156/263 (59%), Gaps = 17/263 (6%)
Query: 26 QADKIISLPGQPQA-SFQQYAGYITIDEKQQRALFYYFVEAATEAASKP-LVLWLNGGPG 83
+ D+I+ LPGQP +F Y GY+TID+ RAL+Y+F EA T + LVLWLNGGPG
Sbjct: 6 EDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPG 65
Query: 84 CSSIGAGAFCEHGPFK--PSGDTLLRNEYSWNKEANMLYLESPAGVGFSYSANKSFYGSV 141
CSSIG GA E G F+ +G++LL NEY+WNK AN+L+ ESPAGVGFSYS N S S+
Sbjct: 66 CSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYS-NTSSDLSM 124
Query: 142 NDAIAARDNLAFLEGWYEKFPEYKNREFFITGESYAGHYVPQLAQLIIQSNMK---LNLK 198
D A+D FL W+E+FP Y REF+I GES GH++PQL+Q++ ++ +N +
Sbjct: 125 GDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSPFINFQ 182
Query: 199 GIAIGNPLLEFNTDFNSRAEFLWSHGLISDSTYDIFTRVCNYSQIRRQYASGSLTAVCSQ 258
G+ + + L + D E W HGLISD T D +VC + T C++
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHP------TPECTE 236
Query: 259 VISQVSREISRFVDTYDVTLDVC 281
V ++ E ++ Y + C
Sbjct: 237 VWNKALAEQGN-INPYTIYTPTC 258
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 139/218 (63%), Gaps = 9/218 (4%)
Query: 24 VPQADKIISLPG-QPQASFQQYAGYITIDEKQQRALFYYFVEAATEAASKPLVLWLNGGP 82
P D+I LPG Q SF+QY+GY+ + L Y+FVE+ + + P+VLWLNGGP
Sbjct: 3 APDQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 83 GCSSIGAGAFCEHGPF--KPSGDTLLRNEYSWNKEANMLYLESPAGVGFSYSANKSFYGS 140
GCSS+ G EHGPF +P G TL N YSWN AN+LYLESPAGVGFSYS +K FY +
Sbjct: 61 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDK-FY-A 117
Query: 141 VNDAIAARDNLAFLEGWYEKFPEYKNREFFITGESYAGHYVPQLAQLIIQSNMKLNLKGI 200
ND A+ N L+ ++ FPEYKN + F+TGESYAG Y+P LA L++Q + +NL+G+
Sbjct: 118 TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ-DPSMNLQGL 176
Query: 201 AIGNPLLEFNTDFNSRAEFLWSHGLISDSTYDIFTRVC 238
A+GN L + + NS F + HGL+ + + C
Sbjct: 177 AVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC 214
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 127/448 (28%), Positives = 193/448 (43%), Gaps = 87/448 (19%)
Query: 43 QYAGYITIDEKQQRALFYYFVEAATEAASKPLVLWLNGGPGCSSIGAGAFCEHGP----- 97
QY GY+ + E + + F++ E+ + A P++LWLNGGPGCSS+ G F E GP
Sbjct: 16 QYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSL-TGLFFELGPSSIGP 73
Query: 98 -FKPSGDTLLRNEYSWNKEANMLYLESPAGVGFSYSANKSFYGSVNDAIAARDNLAFLEG 156
KP G N YSWN A +++L+ P VGFSYS + G N A +D FLE
Sbjct: 74 DLKPIG-----NPYSWNSNATVIFLDQPVNVGFSYSGSS---GVSNTVAAGKDVYNFLEL 125
Query: 157 WYEKFPEYKNR--EFFITGESYAGHYVPQLAQLII-QSNMKLNLKGIAIGNPLLEFNTDF 213
++++FPEY N+ +F I GESYAGHY+P A I+ + NL + IGN L + T +
Sbjct: 126 FFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTDPLTQY 185
Query: 214 NSRAEFLWSHG-----LISD---STYDIFTRVCNYSQIRRQYASGSLTAVCSQVISQVSR 265
N G L S+ + D R I Y S S+ + I +
Sbjct: 186 NYYEPMACGEGGEPSVLPSEECSAMEDSLERCL--GLIESCYDSQSVWSCVPATIYCNNA 243
Query: 266 EISRFVDT----YDVTLD-----VCLPSVLLQSKMLSQLQDKEEIDVCVEDETTKYLNRK 316
+++ + T YD+ D +C P+ LQD ++ YLN+
Sbjct: 244 QLAPYQRTGRNVYDIRKDCEGGNLCYPT----------LQDIDD-----------YLNQD 282
Query: 317 DVQKALHAQLIGVTSWTVCSEVLKYDMQNLEI------------PTIHVLGKLAKSGIRV 364
V++A+ A EV Y+ N +I P + L + +
Sbjct: 283 YVKEAVGA------------EVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPI 330
Query: 365 LVYSGDQDSVLPLTGTRTLVNGLAKEIGLN-TTVPYRTWVEG--RQAAGWTQVYGDILSF 421
LVY+GD+D + G + + L + + R W + AG + Y
Sbjct: 331 LVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYL 390
Query: 422 ATIRGASHEAPLSQPRRSLALFNAFLGG 449
G H P P +L++ N ++ G
Sbjct: 391 RVFNGG-HMVPFDVPENALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 121/471 (25%), Positives = 210/471 (44%), Gaps = 76/471 (16%)
Query: 33 LPG-----QPQASFQQYAGYITI-----DEKQQRALFYYFVEAATEAAS----KPLVLWL 78
LPG P Q +AG+I + DE+ L Y+F + ++ +PL++WL
Sbjct: 14 LPGLSEVPDPSNIPQMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWL 73
Query: 79 NGGPGCSSIGAGAFCEHGPFKPSGD-TLLRNEYSWNKEANMLYLESPAGVGFSYSANKS- 136
NGGPGCSS+ GA E GPF+ + D L NE SW + ++L+++ P G GFS NK
Sbjct: 74 NGGPGCSSMD-GALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDE 132
Query: 137 -------FYGSVNDAIAARDNLAFLEGWYEKFPEYKNREFFITGESYAGHYVPQLAQLII 189
F + D + + FLE +++ FPE R+ ++GESYAG Y+P A I+
Sbjct: 133 GKIDKNKFDEDLEDV--TKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAIL 190
Query: 190 QSNM-------KLNLKGIAIGNPLLEFNTDFNSRAEFLWSHGLISDSTYDIFTRVCNYSQ 242
N +LK + IGN ++ NT S F LI +S + F + N +
Sbjct: 191 NHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPN-FKHLTNAHE 249
Query: 243 IRRQYASGSLT--------AVCSQVISQV---SREISR-----FVDTYDVTLDVCLPSVL 286
+ + + T C +++ + +RE S+ ++ Y+ L PS
Sbjct: 250 NCQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCG 309
Query: 287 LQ-SKMLSQLQDKEEIDVCVEDETTKYLNRKDVQKALHAQLIGVTSWTVCSEVLKYDMQN 345
+ K +S + +K+ + V +LH + W C+ + + N
Sbjct: 310 MNWPKDISFV--------------SKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSN 355
Query: 346 -LEIPTIHVLGKLAKSGIRVLVYSGDQDSVLPLTGTRTLVNGL--AKEIGLNTTVPYRTW 402
+ P+IH+L L +SGI +++++GD+D + G ++ L G + W
Sbjct: 356 PISKPSIHLLPGLLESGIEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDW 415
Query: 403 V-------EGRQAAGWTQVYGDILSFATIRGASHEAPLSQPRRSLALFNAF 446
+ + + +G+ + Y L+F ++ ASH P + S + + +
Sbjct: 416 IHKSKSTDDSEEFSGYVK-YDRNLTFVSVYNASHMVPFDKSLVSRGIVDIY 465
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 191/448 (42%), Gaps = 87/448 (19%)
Query: 43 QYAGYITIDEKQQRALFYYFVEAATEAASKPLVLWLNGGPGCSSIGAGAFCEHGP----- 97
QY GY+ + E + + F++ E+ + A P++LWLNGGPGCSS+ G F GP
Sbjct: 16 QYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSL-TGLFFALGPSSIGP 73
Query: 98 -FKPSGDTLLRNEYSWNKEANMLYLESPAGVGFSYSANKSFYGSVNDAIAARDNLAFLEG 156
KP G N YSWN A +++L+ P VGFSYS + G N A +D FLE
Sbjct: 74 DLKPIG-----NPYSWNSNATVIFLDQPVNVGFSYSGSS---GVSNTVAAGKDVYNFLEL 125
Query: 157 WYEKFPEYKNR--EFFITGESYAGHYVPQLAQLII-QSNMKLNLKGIAIGNPLLEFNTDF 213
++++FPEY N+ +F I G SYAGHY+P A I+ + NL + IGN L + T +
Sbjct: 126 FFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTDPLTQY 185
Query: 214 NSRAEFLWSHG-----LISD---STYDIFTRVCNYSQIRRQYASGSLTAVCSQVISQVSR 265
N G L S+ + D R I Y S S+ + I +
Sbjct: 186 NYYEPMACGEGGEPSVLPSEECSAMEDSLERCL--GLIESCYDSQSVWSCVPATIYCNNA 243
Query: 266 EISRFVDT----YDVTLD-----VCLPSVLLQSKMLSQLQDKEEIDVCVEDETTKYLNRK 316
+++ + T YD+ D +C P+ LQD ++ YLN+
Sbjct: 244 QLAPYQRTGRNVYDIRKDCEGGNLCYPT----------LQDIDD-----------YLNQD 282
Query: 317 DVQKALHAQLIGVTSWTVCSEVLKYDMQNLEI------------PTIHVLGKLAKSGIRV 364
V++A+ A EV Y+ N +I P + L + +
Sbjct: 283 YVKEAVGA------------EVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPI 330
Query: 365 LVYSGDQDSVLPLTGTRTLVNGLAKEIGLN-TTVPYRTWVEG--RQAAGWTQVYGDILSF 421
LVY+GD+D + G + + L + + R W + AG + Y
Sbjct: 331 LVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYL 390
Query: 422 ATIRGASHEAPLSQPRRSLALFNAFLGG 449
G H P P +L++ N ++ G
Sbjct: 391 RVFNGG-HMVPFDVPENALSMVNEWIHG 417
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 92/155 (59%), Gaps = 7/155 (4%)
Query: 302 DVCVEDETTKYLNRKDVQKALHAQLIGVT--SWTVCSEVLKYDMQNLEIPTIHVLGKLAK 359
D C E +T Y NR+DVQ ALHA + G +W CS+ + + + + +L
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 360 SGIRVLVYSGDQDSVLPLTGTRTLVNGLAKEIGLNTTVPYRTWVEGRQAAGWTQVYGDIL 419
+G+R+ V+SGD D+V+PLT TR + L GL TT + W + ++ GW+QVY L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGAL----GLPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 420 SFATIRGASHEAPLSQPRRSLALFNAFLGGKPLPG 454
+ ++RGA HE PL +PR++L LF FL GKP+PG
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 92/155 (59%), Gaps = 7/155 (4%)
Query: 302 DVCVEDETTKYLNRKDVQKALHAQLIGVT--SWTVCSEVLKYDMQNLEIPTIHVLGKLAK 359
D C E +T Y NR+DVQ ALHA + G +W CS+ + + + + +L
Sbjct: 5 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 64
Query: 360 SGIRVLVYSGDQDSVLPLTGTRTLVNGLAKEIGLNTTVPYRTWVEGRQAAGWTQVYGDIL 419
+G+R+ V+SGD D+V+PLT TR + L GL TT + W + ++ GW+QVY L
Sbjct: 65 AGLRIWVFSGDTDAVVPLTATRYSIGAL----GLPTTTSWYPWYDDQEVGGWSQVYKG-L 119
Query: 420 SFATIRGASHEAPLSQPRRSLALFNAFLGGKPLPG 454
+ ++RGA HE PL +PR++L LF FL GKP+PG
Sbjct: 120 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 154
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 92/155 (59%), Gaps = 7/155 (4%)
Query: 302 DVCVEDETTKYLNRKDVQKALHAQLIGVT--SWTVCSEVLKYDMQNLEIPTIHVLGKLAK 359
D C E +T Y NR+DVQ ALHA + G +W CS+ + + + + +L
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 360 SGIRVLVYSGDQDSVLPLTGTRTLVNGLAKEIGLNTTVPYRTWVEGRQAAGWTQVYGDIL 419
+G+R+ V+SGD D+V+PLT TR + L GL TT + W + ++ GW+QVY L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGAL----GLPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 420 SFATIRGASHEAPLSQPRRSLALFNAFLGGKPLPG 454
+ ++RGA HE PL +PR++L LF FL GKP+PG
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 92/155 (59%), Gaps = 7/155 (4%)
Query: 302 DVCVEDETTKYLNRKDVQKALHAQLIGVT--SWTVCSEVLKYDMQNLEIPTIHVLGKLAK 359
D C E +T Y NR+DVQ ALHA + G +W CS+ + + + + +L
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 360 SGIRVLVYSGDQDSVLPLTGTRTLVNGLAKEIGLNTTVPYRTWVEGRQAAGWTQVYGDIL 419
+G+R+ V+SGD D+V+PLT TR + L GL TT + W + ++ GW+QVY L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGAL----GLPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 420 SFATIRGASHEAPLSQPRRSLALFNAFLGGKPLPG 454
+ ++RGA HE PL +PR++L LF FL GKP+PG
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 6/156 (3%)
Query: 302 DVCVEDETTKYLNRKDVQKALHAQLIGVTS--WTVCSEVLKYDMQNLEIPTIHVLGKLAK 359
D C + YLN +VQ ALHA + G+ WTVCS + + V +L +
Sbjct: 5 DPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQ 64
Query: 360 SGIRVLVYSGDQDSVLPLTGTRTLVNGLAKEIGLNTT-VPYRTWVEGRQAAGWTQVYGDI 418
+G+RV VYSGD DSV+P++ TR + L E+ + T+ P+ R+ GW+ Y +
Sbjct: 65 AGLRVWVYSGDTDSVVPVSSTRRSLAAL--ELPVKTSWYPWYMAPTEREVGGWSVQY-EG 121
Query: 419 LSFATIRGASHEAPLSQPRRSLALFNAFLGGKPLPG 454
L++ T+RGA H P+ +P ++ LF FL G+P+P
Sbjct: 122 LTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMPA 157
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 310 TKYLNRKDVQKALHAQLIGVTSWTVCSEVLKYDMQNL-EIPTIHVLGKLAKSGIRVLVYS 368
+ YLN V+KAL+ + W +C+ ++ + L L L+ ++L+Y+
Sbjct: 12 STYLNNPYVRKALNIPE-QLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYN 70
Query: 369 GDQDSVLPLTGTRTLVNGLAKEIGLNTTVPYRTWV-----EGRQAAGWTQVYGDILSFAT 423
GD D G V+ L +++ V R W+ G Q AG+ + + I +F T
Sbjct: 71 GDVDMACNFMGDEWFVDSLNQKM----EVQRRPWLVKYGDSGEQIAGFVKEFSHI-AFLT 125
Query: 424 IRGASHEAPLSQPRRSLALFNAFLGGKP 451
I+GA H P +P + +F+ FL +P
Sbjct: 126 IKGAGHMVPTDKPLAAFTMFSRFLNKQP 153
>pdb|1UJN|A Chain A, Crystal Structure Of Dehydroquinate Synthase From Thermus
Thermophilus Hb8
pdb|1UJN|B Chain B, Crystal Structure Of Dehydroquinate Synthase From Thermus
Thermophilus Hb8
Length = 348
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 364 VLVYSGDQDSVLPLTGTRTL-----VNGLAKEIGLNTTVPYRTWVEGRQAAGWTQVYGDI 418
+LV G V PL G L V G A+E+ V + + G +AA +VYG +
Sbjct: 14 ILVGEGVLKEVPPLAGPAALLFDRRVEGFAQEVAKALGVRHLLGLPGGEAAKSLEVYGKV 73
Query: 419 LSFATIRGASHEAPL 433
LS+ +G A L
Sbjct: 74 LSWLAEKGLPRNATL 88
>pdb|2YCM|A Chain A, Inhibitors Of Herbicidal Target Ispd
Length = 227
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Query: 252 LTAVCSQVISQVSREISRFVDTYDVTLDVCLPSVLLQSKMLSQLQDKEEIDV-----CVE 306
+ VC + E + ++ DV L +P Q + S LQ EIDV C+
Sbjct: 50 IVVVCDPFFRDIFEE---YEESIDVDLSFAIPGKERQDSVYSGLQ---EIDVNSELVCIH 103
Query: 307 DETTKYLNRKDVQKALH------AQLIGVTSWTVCSEV 338
D +N +DV+K L A ++GV + EV
Sbjct: 104 DSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEV 141
>pdb|2YC3|A Chain A, Inhibitors Of The Herbicidal Target Ispd
pdb|2YC5|A Chain A, Inhibitors Of The Herbicidal Target Ispd
Length = 228
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 17/105 (16%)
Query: 245 RQYASGSLTAVCSQVISQVSREISRFVDTYDVTLDVCLPSVLLQSKMLSQLQDKEEIDV- 303
R + VC + E + ++ DV L +P Q + S LQ EIDV
Sbjct: 44 RMPEVKEIVVVCDPFFRDIFEE---YEESIDVDLSFAIPGKERQDSVYSGLQ---EIDVN 97
Query: 304 ----CVEDETTKYLNRKDVQKALH------AQLIGVTSWTVCSEV 338
C+ D +N +DV+K L A ++GV + EV
Sbjct: 98 SELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEV 142
>pdb|1W77|A Chain A, 2c-methyl-d-erythritol 4-phosphate Cytidylyltransferase
(ispd) From Arabidopsis Thaliana
Length = 228
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 17/105 (16%)
Query: 245 RQYASGSLTAVCSQVISQVSREISRFVDTYDVTLDVCLPSVLLQSKMLSQLQDKEEIDV- 303
R + VC + E + ++ DV L +P Q + S LQ EIDV
Sbjct: 44 RMPEVKEIVVVCDPFFRDIFEE---YEESIDVDLRFAIPGKERQDSVYSGLQ---EIDVN 97
Query: 304 ----CVEDETTKYLNRKDVQKALH------AQLIGVTSWTVCSEV 338
C+ D +N +DV+K L A ++GV + EV
Sbjct: 98 SELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEV 142
>pdb|1J7V|R Chain R, Human Il-10 IL-10r1 Complex
pdb|1LQS|R Chain R, Crystal Structure Of Human Cytomegalovirus Il-10 Bound To
Soluble Human Il-10r1
pdb|1LQS|S Chain S, Crystal Structure Of Human Cytomegalovirus Il-10 Bound To
Soluble Human Il-10r1
pdb|1Y6M|R Chain R, Crystal Structure Of Epstein-Barr Virus Il-10 Complexed
With The Soluble Il-10r1 Chain
pdb|1Y6N|R Chain R, Crystal Structure Of Epstein-Barr Virus Il-10 Mutant
(A87i) Complexed With The Soluble Il-10r1 Chain
pdb|1Y6K|R Chain R, Crystal Structure Of Human Il-10 Complexed With The
Soluble Il-10r1 Chain
Length = 214
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 328 GVTSW---TVCSEVLKYDMQNLEIPTIHVLGKLAKSGIRVLVYSGDQDSVLPLTGTRTLV 384
G+ SW + CS+ L YD+ + + H G A RV G + S +T TR V
Sbjct: 44 GIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRA----RVRAVDGSRHSQWTVTNTRFSV 99
Query: 385 NGLAKEIG 392
+ + +G
Sbjct: 100 DEVTLTVG 107
>pdb|1AH9|A Chain A, The Structure Of The Translational Initiation Factor If1
From Escherichia Coli, Nmr, 19 Structures
Length = 71
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 325 QLIGVTSWTVCSEVLKYDMQNLEIPTIHVLGKLAKSGIRVLVYSGDQDSV 374
++ G T+ + + + +++N + T H+ GK+ K+ IR+L +GD+ +V
Sbjct: 7 EMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRIL--TGDKVTV 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,583,377
Number of Sequences: 62578
Number of extensions: 560418
Number of successful extensions: 1390
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 30
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)